Query psy6804
Match_columns 207
No_of_seqs 210 out of 2419
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 18:49:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w4l_A DCMP deaminse, deoxycyt 100.0 1.5E-35 5E-40 234.6 15.1 120 82-201 3-127 (178)
2 2hvw_A Deoxycytidylate deamina 100.0 3.3E-32 1.1E-36 216.1 6.8 116 86-204 36-156 (184)
3 1vq2_A DCMP deaminase, deoxycy 100.0 1.7E-30 5.8E-35 208.3 10.8 112 91-205 2-156 (193)
4 2nx8_A TRNA-specific adenosine 100.0 4.2E-30 1.4E-34 203.4 9.4 103 88-205 12-119 (179)
5 2a8n_A Cytidine and deoxycytid 100.0 3.7E-30 1.3E-34 197.4 8.3 101 90-205 2-107 (144)
6 1p6o_A Cytosine deaminase; hyd 100.0 4.9E-30 1.7E-34 200.0 7.3 102 89-204 11-117 (161)
7 2g84_A Cytidine and deoxycytid 100.0 1.1E-29 3.7E-34 204.0 8.8 102 89-204 25-137 (197)
8 2b3j_A TRNA adenosine deaminas 100.0 1.4E-29 4.6E-34 197.2 8.9 101 90-205 5-110 (159)
9 3dh1_A TRNA-specific adenosine 100.0 5.8E-30 2E-34 204.1 6.1 101 89-204 23-134 (189)
10 1z3a_A TRNA-specific adenosine 100.0 2.1E-29 7E-34 197.7 8.4 101 90-205 7-112 (168)
11 1wkq_A Guanine deaminase; doma 100.0 1.1E-29 3.9E-34 198.3 6.5 98 92-204 11-114 (164)
12 1wwr_A TRNA adenosine deaminas 100.0 7.1E-29 2.4E-33 195.0 8.1 100 91-205 22-126 (171)
13 2g6v_A Riboflavin biosynthesis 99.9 7.7E-26 2.6E-30 199.5 8.6 98 88-205 26-132 (402)
14 2b3z_A Riboflavin biosynthesis 99.9 1.8E-25 6.1E-30 195.5 9.3 95 91-205 13-116 (373)
15 2hxv_A Diaminohydroxyphosphori 99.9 1.3E-24 4.5E-29 189.2 10.4 94 92-204 14-118 (360)
16 3g8q_A Predicted RNA-binding p 99.9 4.4E-22 1.5E-26 160.4 8.7 71 108-203 19-89 (278)
17 2w4l_A DCMP deaminse, deoxycyt 99.7 1.4E-17 4.9E-22 131.3 5.0 70 1-70 84-153 (178)
18 1uwz_A Cytidine deaminase; CDD 99.6 1.1E-15 3.7E-20 115.6 10.1 86 92-192 3-97 (136)
19 1vq2_A DCMP deaminase, deoxycy 99.6 1.5E-16 5.1E-21 127.2 5.6 67 1-70 107-175 (193)
20 2nyt_A Probable C->U-editing e 99.6 4.6E-16 1.6E-20 123.6 7.3 76 110-202 32-120 (190)
21 2fr5_A Cytidine deaminase; tet 99.6 6.7E-15 2.3E-19 112.4 10.4 94 91-199 14-117 (146)
22 2hvw_A Deoxycytidylate deamina 99.6 3.4E-16 1.2E-20 124.0 3.3 66 1-70 108-175 (184)
23 3g8q_A Predicted RNA-binding p 99.6 1.8E-15 6.1E-20 122.1 6.1 62 1-71 47-108 (278)
24 2z3g_A Blasticidin-S deaminase 99.6 2.4E-14 8.2E-19 107.4 11.1 94 89-199 4-106 (130)
25 1p6o_A Cytosine deaminase; hyd 99.5 4.4E-15 1.5E-19 115.4 4.0 64 1-68 68-134 (161)
26 2nx8_A TRNA-specific adenosine 99.5 1.1E-14 3.6E-19 115.0 5.7 61 1-62 68-132 (179)
27 2nyt_A Probable C->U-editing e 99.5 8E-15 2.7E-19 116.5 4.8 69 1-69 67-145 (190)
28 2a8n_A Cytidine and deoxycytid 99.5 1.4E-14 4.6E-19 110.6 5.9 67 1-68 56-130 (144)
29 1z3a_A TRNA-specific adenosine 99.5 1.7E-14 5.7E-19 112.8 5.2 60 2-62 62-125 (168)
30 1wwr_A TRNA adenosine deaminas 99.5 2.4E-14 8.4E-19 112.1 6.0 67 1-68 75-149 (171)
31 2b3j_A TRNA adenosine deaminas 99.5 2.3E-14 7.8E-19 111.1 5.3 59 2-61 60-122 (159)
32 2g84_A Cytidine and deoxycytid 99.4 1.4E-14 4.9E-19 115.9 2.0 57 12-68 102-165 (197)
33 1wkq_A Guanine deaminase; doma 99.4 1.2E-14 4E-19 113.2 1.0 49 1-49 64-116 (164)
34 3dh1_A TRNA-specific adenosine 99.4 1.7E-14 5.8E-19 114.7 1.8 39 11-49 98-136 (189)
35 2b3z_A Riboflavin biosynthesis 99.4 6.2E-14 2.1E-18 122.4 3.1 66 1-68 64-135 (373)
36 2hxv_A Diaminohydroxyphosphori 99.4 7.6E-14 2.6E-18 121.3 3.2 66 1-68 64-137 (360)
37 3b8f_A Putative blasticidin S 99.4 1.3E-12 4.6E-17 99.3 8.2 96 91-201 3-109 (142)
38 2g6v_A Riboflavin biosynthesis 99.4 1.2E-13 4E-18 121.7 1.6 66 1-68 80-151 (402)
39 1ctt_A Cytidine deaminase; hyd 99.3 4.4E-12 1.5E-16 106.9 10.5 155 13-194 118-286 (294)
40 1r5t_A Cytidine deaminase; zin 99.3 3.7E-11 1.3E-15 91.3 11.1 86 92-192 11-107 (142)
41 2d30_A Cytidine deaminase; pur 99.3 3.3E-11 1.1E-15 91.3 10.1 86 92-192 12-106 (141)
42 3r2n_A Cytidine deaminase; str 99.2 6.3E-11 2.2E-15 89.4 8.2 88 93-197 11-109 (138)
43 3mpz_A Cytidine deaminase; ssg 99.0 1.4E-09 4.8E-14 82.9 7.7 90 93-197 26-125 (150)
44 1ctt_A Cytidine deaminase; hyd 98.9 3.4E-09 1.2E-13 89.3 7.9 90 89-192 47-140 (294)
45 3dmo_A Cytidine deaminase; str 98.9 1.6E-08 5.5E-13 76.1 10.1 86 92-192 11-107 (138)
46 3oj6_A Blasticidin-S deaminase 98.8 9E-08 3.1E-12 73.5 11.5 90 88-194 27-125 (158)
47 4eg2_A Cytidine deaminase; UMP 98.6 1.7E-07 5.9E-12 78.8 9.4 153 14-192 122-288 (298)
48 4eg2_A Cytidine deaminase; UMP 98.3 1.7E-06 6E-11 72.7 8.1 87 92-193 53-144 (298)
49 3v4k_A DNA DC->DU-editing enzy 96.3 0.0047 1.6E-07 48.9 4.9 56 14-70 101-162 (203)
50 3vow_A Probable DNA DC->DU-edi 96.3 0.0031 1.1E-07 49.4 3.8 56 14-69 87-148 (190)
51 1uwz_A Cytidine deaminase; CDD 95.9 0.0048 1.6E-07 45.9 3.0 28 8-35 66-97 (136)
52 2fr5_A Cytidine deaminase; tet 94.9 0.017 6E-07 43.4 3.2 28 8-35 78-110 (146)
53 3v4k_A DNA DC->DU-editing enzy 94.1 0.042 1.4E-06 43.5 3.8 40 153-192 78-122 (203)
54 2z3g_A Blasticidin-S deaminase 94.0 0.03 1E-06 41.2 2.8 30 8-37 67-101 (130)
55 3vow_A Probable DNA DC->DU-edi 92.5 0.12 4E-06 40.5 4.1 39 153-191 64-107 (190)
56 3b8f_A Putative blasticidin S 82.2 0.49 1.7E-05 35.1 1.5 31 11-41 68-106 (142)
57 1r5t_A Cytidine deaminase; zin 77.5 1.8 6.1E-05 32.0 3.2 24 12-35 79-107 (142)
58 3zzm_A Bifunctional purine bio 76.7 14 0.00047 33.1 9.2 79 95-198 413-492 (523)
59 4ehi_A Bifunctional purine bio 76.6 25 0.00087 31.5 10.8 81 94-198 420-503 (534)
60 2d30_A Cytidine deaminase; pur 69.8 2.4 8.4E-05 31.3 2.3 15 21-35 92-106 (141)
61 1zcz_A Bifunctional purine bio 59.2 63 0.0022 28.4 9.5 78 96-198 355-433 (464)
62 3r2n_A Cytidine deaminase; str 52.4 8.9 0.0003 28.1 2.6 27 15-41 78-110 (138)
63 1zy7_A RNA-specific adenosine 46.7 47 0.0016 28.6 6.7 71 111-186 52-158 (403)
64 1nm3_A Protein HI0572; hybrid, 37.2 1.4E+02 0.0047 22.8 8.2 67 114-195 127-197 (241)
65 3v2d_S 50S ribosomal protein L 33.9 25 0.00086 24.8 2.4 38 28-65 74-111 (112)
66 3gxh_A Putative phosphatase (D 31.5 86 0.003 22.6 5.3 53 16-69 21-73 (157)
67 1xri_A AT1G05000; structural g 29.8 81 0.0028 22.2 4.8 49 17-69 15-63 (151)
68 3r8s_O 50S ribosomal protein L 27.5 30 0.001 24.5 1.9 38 28-65 78-115 (116)
69 1vk9_A Conserved hypothetical 24.2 54 0.0018 24.3 2.9 49 12-68 61-109 (151)
70 1nwz_A PYP, photoactive yellow 22.6 48 0.0016 23.6 2.3 20 110-131 25-44 (125)
71 2zjr_L 50S ribosomal protein L 21.2 44 0.0015 23.5 1.8 39 27-65 75-113 (114)
72 1mzu_A PPR; photoactive yellow 21.1 53 0.0018 23.6 2.3 20 110-131 30-49 (129)
73 2v2f_A Penicillin binding prot 20.7 47 0.0016 16.4 1.4 15 113-127 5-19 (26)
No 1
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=234.60 Aligned_cols=120 Identities=67% Similarity=1.196 Sum_probs=107.2
Q ss_pred CCCCcCchhHHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCC-----CChH
Q psy6804 82 HKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELD-----MCHA 156 (207)
Q Consensus 82 ~~~~~~~~~~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~-----~~HA 156 (207)
++++.++++||++||++|+++|++|.++++|||||||++||+||++|+|+.+.+|.+.+++|.+..++++. +.||
T Consensus 3 ~~~~~~~~~~d~~~M~~A~~~A~~s~~p~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HA 82 (178)
T 2w4l_A 3 CKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHA 82 (178)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHTTCCCSSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCH
T ss_pred CcccccccHHHHHHHHHHHHHHHhcCCCCCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCH
Confidence 46788899999999999999999999999999999998899999999999999999988888776455422 7999
Q ss_pred HHHHHHccCCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEec
Q psy6804 157 EMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 201 (207)
Q Consensus 157 E~~Ai~~~~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~ 201 (207)
|++||.++.+..++|++||||+|||.||+++|+++||+||||+.+
T Consensus 83 E~~AI~~a~g~~~~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~ 127 (178)
T 2w4l_A 83 ELNAIMNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSD 127 (178)
T ss_dssp HHHHHHC----CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHhcCCCccccEEEEeCCcHHHHHHHHHHHCCCEEEEEec
Confidence 999999987888999999999999999999999999999999987
No 2
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.97 E-value=3.3e-32 Score=216.12 Aligned_cols=116 Identities=35% Similarity=0.677 Sum_probs=96.7
Q ss_pred cCchhHHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCC---CCCCCCCCCCCCCCCCCCChHHHHHHH
Q psy6804 86 DDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CSDDEFPWDKNTHDELDMCHAEMNAIL 162 (207)
Q Consensus 86 ~~~~~~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~---~~~~~~~~~~~~~~~~~~~HAE~~Ai~ 162 (207)
.++++||++||++|+++|++|.++++||||||| +||+||++|+|+.+.+ |.+.++...+...++ +.|||++||.
T Consensus 36 ~~~~~~de~~M~~A~~~A~~s~~~~~~VGAVIV-~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~--t~HAE~~AI~ 112 (184)
T 2hvw_A 36 TNRLSWQDYFMANAELISKRSTCNRAYVGAVLV-KNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIR--TVHAEMNALI 112 (184)
T ss_dssp -CCCCHHHHHHHHHHHHGGGCCCTTCCCEEEEE-ETTEEEEEEECEESTTSCCHHHHCCCEETTEECS--EECHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEE-ECCEEEEEEECCCcccccccccccccccccccCC--ccCHHHHHHH
Confidence 346789999999999999999999999999999 5999999999998754 222122222233355 8999999999
Q ss_pred ccC--CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804 163 NKN--SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM 204 (207)
Q Consensus 163 ~~~--~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~ 204 (207)
++. +..++|++||+|+|||.||+++|+|+||+||||+.++++
T Consensus 113 ~A~~~g~~l~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~ 156 (184)
T 2hvw_A 113 QCAKEGISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRI 156 (184)
T ss_dssp HHHHHTCCCTTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSC
T ss_pred HHHHcCCCceeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCC
Confidence 873 567899999999999999999999999999999998765
No 3
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=99.97 E-value=1.7e-30 Score=208.34 Aligned_cols=112 Identities=38% Similarity=0.570 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCC-----CCCCCC------------------
Q psy6804 91 WHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEF-----PWDKNT------------------ 147 (207)
Q Consensus 91 ~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~-----~~~~~~------------------ 147 (207)
||++||++|+++|++|.++++||||||| ++|+||++|+|+++.+..+... .|.+..
T Consensus 2 ~d~~fM~~A~~~A~rs~~~~~~VGAVIV-~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (193)
T 1vq2_A 2 KASTVLQIAYLVSQESKCCSWKVGAVIE-KNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGS 80 (193)
T ss_dssp CHHHHHHHHHHHHTTCCCSSBCCEEEEE-ETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC------------------
T ss_pred CHHHHHHHHHHHHHhcCCCCCCEEEEEE-ECCEEEEEEeCCCCCCCCCcchhhccccccccccccccccccccccccccc
Confidence 4899999999999999999999999999 8999999999999875211000 000000
Q ss_pred ------------------CCCCCCChHHHHHHHcc--CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804 148 ------------------HDELDMCHAEMNAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS 205 (207)
Q Consensus 148 ------------------~~~~~~~HAE~~Ai~~~--~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~ 205 (207)
.++ +.|||++||.++ .+.++.|++||||+|||+||+++|+++||+||||+.++++.
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~--~~HAE~~AI~~a~~~g~~~~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy~~~~~~~ 156 (193)
T 1vq2_A 81 TDRFVLAKEHRSAHSEWSSKN--EIHAELNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKN 156 (193)
T ss_dssp --CEEECGGGHHHHHHHHHHH--CBCHHHHHHHHHHHHTCCCTTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTC
T ss_pred ccccccchhhccccccccCCC--CCCHHHHHHHHHHhcCCCcCCeEEEEeCCCcHHHHHHHHHhCCCEEEEecCCCCc
Confidence 012 789999999987 25688999999999999999999999999999999887753
No 4
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=99.96 E-value=4.2e-30 Score=203.45 Aligned_cols=103 Identities=31% Similarity=0.442 Sum_probs=91.2
Q ss_pred chhHHHHHHHHHHHHHhhCCC-CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--
Q psy6804 88 VLEWHEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK-- 164 (207)
Q Consensus 88 ~~~~~~~~m~~A~~~a~~s~~-~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~-- 164 (207)
.+++|++||++|+++|+++.+ ++.|||||||+ ||+||++|+|..... .|+ +.|||++||+++
T Consensus 12 ~~~~d~~~M~~Al~~A~~a~~~g~~pVGAVIV~-~g~Ii~~G~N~~~~~------------~d~--t~HAE~~AI~~a~~ 76 (179)
T 2nx8_A 12 SLEEQTYFMQEALKESEKSLQKAEIPIGCVIVK-DGEIIGRGHNAREES------------NQA--IMHAEMMAINEANA 76 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEE-TTEEEEEEECCHHHH------------TCT--TCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhccccCCCCEEEEEEE-CCEEEEEEECCCCCc------------CCC--ccCHHHHHHHHHHH
Confidence 467999999999999999875 48999999995 999999999987532 355 899999999986
Q ss_pred --CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804 165 --NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS 205 (207)
Q Consensus 165 --~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~ 205 (207)
+...+.|++||||+|||+||+++|+|+||+||||+.++++.
T Consensus 77 ~~~~~~l~g~tlYvTlEPC~mCa~ai~~agI~rVv~g~~d~~~ 119 (179)
T 2nx8_A 77 HEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKF 119 (179)
T ss_dssp HHTSSCCTTEEEEEEECCBHHHHHHHHHTTCCEEEEEECCTTT
T ss_pred HcCCCcccceEEEECCCCcHHHHHHHHHhCCCeEEEEEeCCCC
Confidence 45678999999999999999999999999999999988763
No 5
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.96 E-value=3.7e-30 Score=197.40 Aligned_cols=101 Identities=25% Similarity=0.359 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHHhhCCCC-CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----
Q psy6804 90 EWHEYFMASAFLVAKRSKDP-VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---- 164 (207)
Q Consensus 90 ~~~~~~m~~A~~~a~~s~~~-~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---- 164 (207)
+||++||++|+++|+++.++ +.|||||||+ ||+||++|+|..+.. .|+ +.|||++||.++
T Consensus 2 ~~d~~~m~~A~~~A~~a~~~~~~~VGAviv~-~g~Ii~~G~N~~~~~------------~~~--~~HAE~~Ai~~a~~~~ 66 (144)
T 2a8n_A 2 AERTHFMELALVEARSAGERDEVPIGAVLVL-DGRVIARSGNRTREL------------NDV--TAHAEIAVIRMACEAL 66 (144)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCCCEEEEEE-TTEEEEEEECCHHHH------------TCT--TCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhcCCCCCEEEEEEE-CCEEEEEEECCCCCC------------CCC--cCCHHHHHHHHHHHHc
Confidence 46899999999999998764 8999999996 999999999987542 355 899999999986
Q ss_pred CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804 165 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS 205 (207)
Q Consensus 165 ~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~ 205 (207)
+...++|++||+|+|||+||+++|+|+||+||||+.++++.
T Consensus 67 ~~~~~~~~tly~T~ePC~mC~~ai~~~~i~rvv~~~~~~~~ 107 (144)
T 2a8n_A 67 GQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKG 107 (144)
T ss_dssp TCSCCTTCEEEEEECCBHHHHHHHHHTTCSEEEEEECCTTT
T ss_pred CCCccCCeEEEECCCChHHHHHHHHHHCCCEEEEeecCCCc
Confidence 46688999999999999999999999999999999887753
No 6
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.96 E-value=4.9e-30 Score=200.01 Aligned_cols=102 Identities=25% Similarity=0.363 Sum_probs=89.7
Q ss_pred hhHHHHHHHHHHHHHhhCCCC-CCceEEEEE-cCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCC
Q psy6804 89 LEWHEYFMASAFLVAKRSKDP-VTRVGAVIV-NEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNS 166 (207)
Q Consensus 89 ~~~~~~~m~~A~~~a~~s~~~-~~~vGaviv-~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~ 166 (207)
++||++||++|+++|+++.++ +.||||||| ++||+||++|+|..+.. +++ +.|||++||.++..
T Consensus 11 ~~~d~~~M~~A~~~A~~a~~~~~~pVGAviVd~~~g~Ii~~G~N~~~~~------------~~~--t~HAE~~Ai~~a~~ 76 (161)
T 1p6o_A 11 SKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQK------------GSA--TLHGEISTLENCGR 76 (161)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTTCCEEEEEECCHHHH------------TCS--SCCHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHHhhhccCCCCEEEEEEEecCCEEEEEEECCCCCC------------CCc--ccCHHHHHHHHHHH
Confidence 468999999999999999765 799999999 58999999999986531 345 89999999999844
Q ss_pred C---CCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804 167 A---DTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM 204 (207)
Q Consensus 167 ~---~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~ 204 (207)
. .++|++||||+|||+||+++|+|+||+||||+.++++
T Consensus 77 ~~~~~~~~~tlYvT~EPC~mC~~ai~~agi~rVv~g~~~~~ 117 (161)
T 1p6o_A 77 LEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNF 117 (161)
T ss_dssp CCHHHHTTEEEEEEECCCHHHHHHHHHHTCCEEEEEESSSC
T ss_pred hCCccccccccccCCCCCHHHHHHHHHhCCCEEEEEecCCC
Confidence 3 5789999999999999999999999999999987764
No 7
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=99.96 E-value=1.1e-29 Score=204.05 Aligned_cols=102 Identities=23% Similarity=0.326 Sum_probs=87.4
Q ss_pred hhHHHHHHHHHHHHHhhCCCC-CCceEEEEEcCC-CeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--
Q psy6804 89 LEWHEYFMASAFLVAKRSKDP-VTRVGAVIVNED-NKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK-- 164 (207)
Q Consensus 89 ~~~~~~~m~~A~~~a~~s~~~-~~~vGaviv~~~-g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~-- 164 (207)
.++|++||++|+++|+++.+. +.|||||||+++ |+||++|+|+.+.. .++ +.|||++||+++
T Consensus 25 ~~~d~~~M~~Al~~A~~a~~~~~~PvGAVIV~~~~g~Iia~G~N~~~~~------------~~~--~~HAE~~Ai~~a~~ 90 (197)
T 2g84_A 25 LAAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPG------------RCS--AAHAEILALSLAQA 90 (197)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTTCCSCEEEEEETTTCBEEEEEECCTTTT------------TCT--TCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhcCCCCEEEEEEEcCCCEEEEEEECCCCcc------------CCC--ccCHHHHHHHHHHH
Confidence 456999999999999998754 789999999878 99999999987642 345 899999999975
Q ss_pred --CCCC-----CCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804 165 --NSAD-----TKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM 204 (207)
Q Consensus 165 --~~~~-----~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~ 204 (207)
+... ++|+|||||+|||+||+++|+|+||+||||+.++++
T Consensus 91 ~~~~~~L~~~~~~g~tlYvTlEPC~mCa~Aii~agI~rVv~g~~d~~ 137 (197)
T 2g84_A 91 KLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDD 137 (197)
T ss_dssp HHTCSCTTCTTSCCEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHH
T ss_pred HcCCccccccCcCCEEEEEeCCCCHHHHHHHHHhCcCEEEEEecCCC
Confidence 2333 467999999999999999999999999999986643
No 8
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=99.96 E-value=1.4e-29 Score=197.23 Aligned_cols=101 Identities=31% Similarity=0.432 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHhhCCC-CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----
Q psy6804 90 EWHEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---- 164 (207)
Q Consensus 90 ~~~~~~m~~A~~~a~~s~~-~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---- 164 (207)
++|++||++|+++|+++.+ ++.|||||||+ ||+||++|+|..... .++ +.|||++||.++
T Consensus 5 ~~d~~~m~~A~~~A~~a~~~~~~pVGAviv~-~g~Ii~~G~N~~~~~------------~~~--~~HAE~~Ai~~a~~~~ 69 (159)
T 2b3j_A 5 TNDIYFMTLAIEEAKKAAQLGEVPIGAIITK-DDEVIARAHNLRETL------------QQP--TAHAEHIAIERAAKVL 69 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEE-TTEEEEEEECCHHHH------------TCT--TCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCCEEEEEEE-CCEEEEEEECCCCCC------------CCC--ccCHHHHHHHHHHHHc
Confidence 5899999999999999876 48999999996 999999999986431 234 899999999986
Q ss_pred CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804 165 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS 205 (207)
Q Consensus 165 ~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~ 205 (207)
+...+.+++||+|+|||+||+++|+|+||+||||+.++++.
T Consensus 70 ~~~~l~~~tlyvT~EPC~mC~~ai~~agi~rVv~~~~~~~~ 110 (159)
T 2b3j_A 70 GSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKG 110 (159)
T ss_dssp TSSCCTTEEEEEEECCCHHHHHHHHHTTCSEEEEEECCTTT
T ss_pred CCCCcceeEEEECCCCcHHHHHHHHHhCCCeEEEEeeCCCc
Confidence 45688999999999999999999999999999999988764
No 9
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=99.96 E-value=5.8e-30 Score=204.12 Aligned_cols=101 Identities=30% Similarity=0.425 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHHHhhCC-CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCC-
Q psy6804 89 LEWHEYFMASAFLVAKRSK-DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNS- 166 (207)
Q Consensus 89 ~~~~~~~m~~A~~~a~~s~-~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~- 166 (207)
+..|++||++|+++|+++. .++.||||||| +||+||++|+|+.+.. .++ +.|||++||+++..
T Consensus 23 ~~~d~~~M~~Al~lA~~a~~~~~~pVGAVIV-~~g~IIa~G~N~~~~~------------~~~--t~HAEi~AI~~a~~~ 87 (189)
T 3dh1_A 23 MEETEKWMEEAMHMAKEALENTEVPVGCLMV-YNNEVVGKGRNEVNQT------------KNA--TRHAEMVAIDQVLDW 87 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCCEEEEE-ETTEEEEEEECCHHHH------------TCT--TCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhCCCCCEEEEEE-ECCEEEEEEeCCCCcc------------CCC--cCcHHHHHHHHHHHH
Confidence 3569999999999999985 46899999999 5999999999985431 234 89999999998621
Q ss_pred ---------CCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804 167 ---------ADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM 204 (207)
Q Consensus 167 ---------~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~ 204 (207)
..+.|+|||||+|||+||+++|+|+||+||||+.+++.
T Consensus 88 ~~~~~~~~~~~l~g~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~ 134 (189)
T 3dh1_A 88 CRQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNER 134 (189)
T ss_dssp HHHHCCCHHHHHTTEEEEEEECCBHHHHHHHHHHTCCEEEEEECCTT
T ss_pred HhhcCcccccccCCeEEEEeCCChHHHHHHHHHhCCCEEEEEecCCC
Confidence 24789999999999999999999999999999987653
No 10
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=99.96 E-value=2.1e-29 Score=197.73 Aligned_cols=101 Identities=35% Similarity=0.532 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHHhhCCC-CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----
Q psy6804 90 EWHEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---- 164 (207)
Q Consensus 90 ~~~~~~m~~A~~~a~~s~~-~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---- 164 (207)
.+|++||++|+++|+++.+ ++.||||||| +||+||++|+|..... .|+ +.|||++||.++
T Consensus 7 ~~d~~~M~~A~~~A~~a~~~~~~pVGAviV-~~g~Ii~~G~N~~~~~------------~d~--t~HAE~~Ai~~a~~~~ 71 (168)
T 1z3a_A 7 FSHEYWMRHALTLAKRAWDEREVPVGAVLV-HNNRVIGEGWNRPIGR------------HDP--TAHAEIMALRQGGLVM 71 (168)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTSCCCEEEEE-ETTEEEEEEECCHHHH------------TCT--TCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCcEEEEEE-ECCEEEEEEEcccccC------------CCc--chhHHHHHHHHHHHHc
Confidence 3588999999999999876 4899999999 6999999999986532 345 899999999986
Q ss_pred CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804 165 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS 205 (207)
Q Consensus 165 ~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~ 205 (207)
+...+.|++||+|+|||+||+++|+|+||+||||+.++++.
T Consensus 72 ~~~~l~~~tlYvTlEPC~mC~~ai~~agi~rVv~g~~d~~~ 112 (168)
T 1z3a_A 72 QNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKT 112 (168)
T ss_dssp TSSCCTTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTT
T ss_pred CCCcccccEEEEcCCCcHHHHHHHHHHCcCEEEEEecCCCc
Confidence 45678999999999999999999999999999999988763
No 11
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=99.96 E-value=1.1e-29 Score=198.29 Aligned_cols=98 Identities=33% Similarity=0.485 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----C
Q psy6804 92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----N 165 (207)
Q Consensus 92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----~ 165 (207)
|+.||++|+++|+++... +.||||||| +||+||++|+|+.... .|+ +.|||++||+++ +
T Consensus 11 ~~~~M~~Al~~A~~a~~~g~~~pVGAVIV-~~g~Ii~~G~N~~~~~------------~d~--~~HAE~~AI~~a~~~~~ 75 (164)
T 1wkq_A 11 HETFLKRAVTLACEGVNAGIGGPFGAVIV-KDGAIIAEGQNNVTTS------------NDP--TAHAEVTAIRKACKVLG 75 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSSCEEEEE-ETTEEEEEEECCHHHH------------TCT--TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEE-ECCEEEEEEecCCcCC------------CCc--ccCHHHHHHHHHHHHcC
Confidence 788999999999998643 799999999 6999999999987542 345 899999999986 4
Q ss_pred CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804 166 SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM 204 (207)
Q Consensus 166 ~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~ 204 (207)
...++|++||||+|||+||+++|+|+||+||||+.++++
T Consensus 76 ~~~l~g~tlYvT~EPC~mCa~ai~~agI~rVv~g~~~~~ 114 (164)
T 1wkq_A 76 AYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTD 114 (164)
T ss_dssp SSSCTTEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHH
T ss_pred CCCcCceEEEEeCCChHHHHHHHHHHCCCEEEEEEcCCC
Confidence 678899999999999999999999999999999987653
No 12
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=99.95 E-value=7.1e-29 Score=194.99 Aligned_cols=100 Identities=33% Similarity=0.500 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhhCCC-CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----C
Q psy6804 91 WHEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----N 165 (207)
Q Consensus 91 ~~~~~m~~A~~~a~~s~~-~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----~ 165 (207)
+|++||++|+++|+++.+ ++.|||||||+ ||+||++|+|..... .|+ +.|||++||.++ +
T Consensus 22 ~~~~~M~~A~~~A~~a~~~~~~pVGAvIV~-dg~Ii~~G~N~~~~~------------~d~--t~HAE~~AI~~a~~~~g 86 (171)
T 1wwr_A 22 GKEYFLKVALREAKRAFEKGEVPVGAIIVK-EGEIISKAHNSVEEL------------KDP--TAHAEMLAIKEACRRLN 86 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSCCCEEEEEE-TTEEEEEEECCHHHH------------TCT--TCCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcccCCCCCEEEEEEE-CCEEEEEEECCCCcc------------CCc--ccCHHHHHHHHHHHHcC
Confidence 368899999999999876 48999999996 999999999987542 355 899999999986 4
Q ss_pred CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804 166 SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS 205 (207)
Q Consensus 166 ~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~ 205 (207)
...+.|++||+|+|||+||+++|+|+||+||||+.++++.
T Consensus 87 ~~~l~~~tlYvT~EPC~mC~~ai~~agi~rVv~~~~d~~~ 126 (171)
T 1wwr_A 87 TKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKH 126 (171)
T ss_dssp CSCCTTEEEEESSCCBHHHHHHHHHTTCSEEEESSCCTTT
T ss_pred CCccCceEEEECCCChHHHHHHHHHHCCCEEEEEecCCCc
Confidence 5688999999999999999999999999999999887753
No 13
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.92 E-value=7.7e-26 Score=199.50 Aligned_cols=98 Identities=33% Similarity=0.567 Sum_probs=88.1
Q ss_pred chhHHHHHHHHHHHHHhhCC---CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc
Q psy6804 88 VLEWHEYFMASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK 164 (207)
Q Consensus 88 ~~~~~~~~m~~A~~~a~~s~---~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~ 164 (207)
..+||++||++|+++|+++. +++.+|||||| +||+||+.|+|+... +.|||++||.++
T Consensus 26 ~~~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~~g------------------~~HAE~~Ai~~a 86 (402)
T 2g6v_A 26 IQGQDEYYMARALKLAQRGRFTTHPNPNVGCVIV-KDGEIVGEGYHQRAG------------------EPHAEVHALRMA 86 (402)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEE-ETTEEEEEEECCCTT------------------SCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCccCCCCCCEEEEEE-ECCEEEEEEeCCCCC------------------ccHHHHHHHHHh
Confidence 46799999999999999984 57899999999 599999999999753 799999999998
Q ss_pred CCCCCCCcEEEEcccCh------HHHHHHHHHhCCCEEEEEecCCCC
Q psy6804 165 NSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKQMS 205 (207)
Q Consensus 165 ~~~~~~~~~ly~T~ePC------~~C~~ai~~agi~~vvy~~~~~~~ 205 (207)
+..++|+|||||+||| +||+++|+|+||+||||+..+++.
T Consensus 87 -~~~~~g~tlyvt~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~ 132 (402)
T 2g6v_A 87 -GEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNP 132 (402)
T ss_dssp -GGGGGSSCEEESSCCC-------CCHHHHHHTTCSCEEESSCCCSC
T ss_pred -hHhcCCeEEEEeCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCc
Confidence 5568999999999999 699999999999999999887764
No 14
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.92 E-value=1.8e-25 Score=195.49 Aligned_cols=95 Identities=37% Similarity=0.545 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHhhCC---CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCCC
Q psy6804 91 WHEYFMASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSA 167 (207)
Q Consensus 91 ~~~~~m~~A~~~a~~s~---~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~~ 167 (207)
-|++||++|+++|+++. +++.+|||||| +||+||++|+|+... +.|||++||+++ +.
T Consensus 13 ~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~~~------------------~~HAE~~Ai~~a-~~ 72 (373)
T 2b3z_A 13 MEEYYMKLALDLAKQGEGQTESNPLVGAVVV-KDGQIVGMGAHLKYG------------------EAHAEVHAIHMA-GA 72 (373)
T ss_dssp CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEE-SSSSEEEEEECCSTT------------------SCCHHHHHHHHH-GG
T ss_pred hHHHHHHHHHHHHHhhCcccCCCCcEEEEEE-ECCEEEEEEeCCCCC------------------CcCHHHHHHHHh-hH
Confidence 48899999999999985 57899999999 699999999999753 799999999998 55
Q ss_pred CCCCcEEEEcccCh------HHHHHHHHHhCCCEEEEEecCCCC
Q psy6804 168 DTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKQMS 205 (207)
Q Consensus 168 ~~~~~~ly~T~ePC------~~C~~ai~~agi~~vvy~~~~~~~ 205 (207)
.++|+|||||+||| +||+++|+++||+||||+..+++.
T Consensus 73 ~~~g~tlyvTlePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~ 116 (373)
T 2b3z_A 73 HAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNP 116 (373)
T ss_dssp GGTTCEEEESSCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCT
T ss_pred hcCCeEEEEeCCCccCcCCChHHHHHHHHhCCCEEEEEecccch
Confidence 78999999999999 799999999999999999887764
No 15
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.91 E-value=1.3e-24 Score=189.22 Aligned_cols=94 Identities=35% Similarity=0.504 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhhCC---CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC--C
Q psy6804 92 HEYFMASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN--S 166 (207)
Q Consensus 92 ~~~~m~~A~~~a~~s~---~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~--~ 166 (207)
.++||++|+++|+++. +++.||||||| +||+||++|+|+... +.|||++||+++. +
T Consensus 14 ~~~~m~~al~lA~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~~~------------------~~HAE~~Ai~~a~~~~ 74 (360)
T 2hxv_A 14 YETFMKRAIELAKKGLGRVNPNPPVGAVVV-KDGRIIAEGFHPYFG------------------GPHAERMAIESARKKG 74 (360)
T ss_dssp HHHHHHHHHHHHHTTTTTSTTSCCCEEEEE-ETTEEEEEEECCSTT------------------SCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccccCCCCCEEEEEE-ECCEEEEEEeCCCCC------------------CcCHHHHHHHHHHhcC
Confidence 3679999999999974 46899999999 599999999999743 7999999999872 5
Q ss_pred CCCCCcEEEEcccCh------HHHHHHHHHhCCCEEEEEecCCC
Q psy6804 167 ADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKQM 204 (207)
Q Consensus 167 ~~~~~~~ly~T~ePC------~~C~~ai~~agi~~vvy~~~~~~ 204 (207)
..+.|+|||||+||| +||+++|+++||+||||+..+++
T Consensus 75 ~~~~g~tlYvTlEPC~h~g~t~~C~~ai~~agi~rVv~~~~d~~ 118 (360)
T 2hxv_A 75 EDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPN 118 (360)
T ss_dssp CCCTTCEEEEEECCCCSCSSSCCHHHHHHHHTCCEEEEEECCCC
T ss_pred CCcCCcEEEEecCcccccCCCHHHHHHHHHhCCCEEEEEecCch
Confidence 788999999999999 69999999999999999998775
No 16
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=99.86 E-value=4.4e-22 Score=160.41 Aligned_cols=71 Identities=24% Similarity=0.384 Sum_probs=63.9
Q ss_pred CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCCCCCCCcEEEEcccChHHHHHH
Q psy6804 108 DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKV 187 (207)
Q Consensus 108 ~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~ly~T~ePC~~C~~a 187 (207)
.|+.+|||||| +||+||+.|.+ + +.|||++||+ +..+.|++||+|+|||+||+++
T Consensus 19 ~PNPpVGAVIV-kDGeIIA~Ge~---g------------------TaHAEInAIr---g~~L~GaTLYVTLEPC~MCAgA 73 (278)
T 3g8q_A 19 IPKRTVTAALL-EGGEIVAVEEA---D------------------DEHAERKLVR---RHDVEGKVVFVTARPCLYCARE 73 (278)
T ss_dssp SCCSSCEEEEE-ETTEEEEEEEC---S------------------SSCHHHHHHH---HSCCTTCEEEESSCCCHHHHHH
T ss_pred CCCCCEEEEEE-ECCEEEEecCC---C------------------CCCHHHHHhC---CCCCCCcEEEEeCCchHHHHHH
Confidence 57999999999 69999999932 1 7999999998 4678999999999999999999
Q ss_pred HHHhCCCEEEEEecCC
Q psy6804 188 IIQSGIKEVIYMCDKQ 203 (207)
Q Consensus 188 i~~agi~~vvy~~~~~ 203 (207)
|+|+||+||||+.++.
T Consensus 74 II~AGIkRVVYGa~~~ 89 (278)
T 3g8q_A 74 LAEAGVAGVVYLGRGR 89 (278)
T ss_dssp HHTTTCCEEEEEECSS
T ss_pred HHHhCCCEEEEEecCC
Confidence 9999999999998754
No 17
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=131.34 Aligned_cols=70 Identities=50% Similarity=0.887 Sum_probs=55.9
Q ss_pred ChhccccCCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeec
Q psy6804 1 MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEM 70 (207)
Q Consensus 1 ~nAi~~~~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~ 70 (207)
+|||+++.+.+++|+|||||+|||.||+++|+++||++|||+.+++.+......+.++|+++||++.+..
T Consensus 84 ~~AI~~a~g~~~~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~~~~d~~~~~~~~~~L~~aGI~V~~~~ 153 (178)
T 2w4l_A 84 LNAIMNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMAGVTFRKFI 153 (178)
T ss_dssp HHHHHC----CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEECTTTTSHHHHHHHHHHHHHTCEEEECC
T ss_pred HHHHHHhcCCCccccEEEEeCCcHHHHHHHHHHHCCCEEEEEeccCCCCcchHHHHHHHHHCCCEEEEcc
Confidence 4899987678899999999999999999999999999999998744333223347899999999999854
No 18
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=99.64 E-value=1.1e-15 Score=115.63 Aligned_cols=86 Identities=20% Similarity=0.315 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CC
Q psy6804 92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NS 166 (207)
Q Consensus 92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~ 166 (207)
++.+|+.|+++++++..| +.||||+|++.||+|+ +|+|..... .++ +.|||+.||.++ +.
T Consensus 3 ~~~l~~~A~~aa~~ayapYs~~~VGAal~~~dG~i~-~G~Nvena~------------~~~--t~cAE~~Ai~~A~~~G~ 67 (136)
T 1uwz_A 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVY-RGCNIENAA------------YSM--CNCAEATALFKAVSEGD 67 (136)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSS------------GGG--CBCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccCccCCCCEEEEEEeCCCeEE-EEeCcccCC------------CCC--ccCHHHHHHHHHHHCCC
Confidence 567999999999999986 7899999999899999 899976431 234 899999999986 56
Q ss_pred CCCCCcEEEEc----ccChHHHHHHHHHhC
Q psy6804 167 ADTKRCKLYTS----LFPCNECAKVIIQSG 192 (207)
Q Consensus 167 ~~~~~~~ly~T----~ePC~~C~~ai~~ag 192 (207)
..+..+++|++ .+||.||.++|.+.+
T Consensus 68 ~~~~~~~l~~~~~~~~~PCg~Crq~l~e~~ 97 (136)
T 1uwz_A 68 TEFQMLAVAADTPGPVSPCGACRQVISELC 97 (136)
T ss_dssp CCEEEEEEEESCSSSCCCCHHHHHHHHHHS
T ss_pred CCeEEEEEEeCCCCccCHHHHHHHHHHHcC
Confidence 67889999996 899999999999987
No 19
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=99.64 E-value=1.5e-16 Score=127.17 Aligned_cols=67 Identities=33% Similarity=0.565 Sum_probs=56.9
Q ss_pred Chhcccc--CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeec
Q psy6804 1 MNAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEM 70 (207)
Q Consensus 1 ~nAi~~~--~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~ 70 (207)
+|||+++ .+.++.|+|||||+|||+||+++|+++||++|||+.++++.. + .+.++|+++||++.+..
T Consensus 107 ~~AI~~a~~~g~~~~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy~~~~~~~~--~-~~~~~l~~aGI~v~~~~ 175 (193)
T 1vq2_A 107 LNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNK--P-GWDDILRNAGIEVFNVP 175 (193)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCC--T-TTTHHHHHTTCEEEECC
T ss_pred HHHHHHHHhcCCCcCCeEEEEeCCCcHHHHHHHHHhCCCEEEEecCCCCcc--h-HHHHHHHHCCCEEEEeC
Confidence 4788885 356899999999999999999999999999999998877653 1 13589999999999843
No 20
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=99.63 E-value=4.6e-16 Score=123.65 Aligned_cols=76 Identities=20% Similarity=0.268 Sum_probs=61.5
Q ss_pred CCceEEEEEcC-C---CeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC---CCCCC-CcEEEEcccCh
Q psy6804 110 VTRVGAVIVNE-D---NKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN---SADTK-RCKLYTSLFPC 181 (207)
Q Consensus 110 ~~~vGaviv~~-~---g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~---~~~~~-~~~ly~T~ePC 181 (207)
+..+.|..|.. + +.+|+.|+|+.. ++ +.|||++||.++. +.... |+|||||+|||
T Consensus 32 ~~tyLcy~v~~~~~~~~~ii~~G~~~~~---------------~~--~~HAE~~Ai~~a~~~l~~~~~~g~TlYvTlePC 94 (190)
T 2nyt_A 32 NKTFLCYVVEAQGKGGQVQASRGYLEDE---------------HA--AAHAEEAFFNTILPAFDPALRYNVTWYVSSSPC 94 (190)
T ss_pred CceEEEEEEEecCCCCCCeEEEEECCCC---------------CC--CcCHHHHHHHHHHHhcCccccCCeEEEEEcChH
Confidence 45678888853 2 569999999862 12 7999999999873 22344 99999999999
Q ss_pred HHHHHHHHHh-----CCCEEEEEecC
Q psy6804 182 NECAKVIIQS-----GIKEVIYMCDK 202 (207)
Q Consensus 182 ~~C~~ai~~a-----gi~~vvy~~~~ 202 (207)
+||+++|+++ ||++|||+.++
T Consensus 95 ~~Ca~aIi~al~~~~gI~rVV~~~~d 120 (190)
T 2nyt_A 95 AACADRIIKTLSKTKNLRLLILVGRL 120 (190)
T ss_pred HHHHHHHHHhhhhcCCccEEEEEeec
Confidence 9999999999 99999998654
No 21
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=99.59 E-value=6.7e-15 Score=112.36 Aligned_cols=94 Identities=23% Similarity=0.300 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---C
Q psy6804 91 WHEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---N 165 (207)
Q Consensus 91 ~~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~ 165 (207)
.++.+|+.|+++++++..| +++|||+|+++||+|+ +|+|-.... .+. ++|||+.||.++ +
T Consensus 14 ~~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~-~G~NvEnas------------~~~--t~cAE~~Ai~~A~~~G 78 (146)
T 2fr5_A 14 HVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENAC------------YPL--GVCAERTAIQKAISEG 78 (146)
T ss_dssp HHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSS------------GGG--CBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEE-EEEeccccC------------CCC--CcCHHHHHHHHHHhCC
Confidence 3567999999999999886 7899999999999998 799976431 123 899999999986 5
Q ss_pred CCCCCCcEEEEc-----ccChHHHHHHHHHhCCCEEEEE
Q psy6804 166 SADTKRCKLYTS-----LFPCNECAKVIIQSGIKEVIYM 199 (207)
Q Consensus 166 ~~~~~~~~ly~T-----~ePC~~C~~ai~~agi~~vvy~ 199 (207)
...+....+|++ .+||.||.++|.+.+-.-.|+.
T Consensus 79 ~~~l~~i~v~~~~~~~~~~PCG~Crq~l~E~~~~~~v~~ 117 (146)
T 2fr5_A 79 YKDFRAIAISSDLQEEFISPCGACRQVMREFGTDWAVYM 117 (146)
T ss_dssp CCCEEEEEEEESCSSSCCCCCHHHHHHHHHTCSSCEEEE
T ss_pred CCceEEEEEEeCCCCcccCCCHHHHHHHHHhCCCCEEEE
Confidence 566788999998 8999999999999983333443
No 22
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.59 E-value=3.4e-16 Score=123.98 Aligned_cols=66 Identities=23% Similarity=0.524 Sum_probs=57.0
Q ss_pred Chhcccc--CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeec
Q psy6804 1 MNAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEM 70 (207)
Q Consensus 1 ~nAi~~~--~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~ 70 (207)
+|||.++ .+.+++|+|||||+|||+||+++|+++||++|||+.++++.. .+.++|+++||++....
T Consensus 108 ~~AI~~A~~~g~~l~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~~~----~~~~~L~~aGIeV~~~~ 175 (184)
T 2hvw_A 108 MNALIQCAKEGISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHP----FAIELMTQKEVEYVQHD 175 (184)
T ss_dssp HHHHHHHHHHTCCCTTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSCCH----HHHHHHHHHTCEEEECC
T ss_pred HHHHHHHHHcCCCceeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCCCH----HHHHHHHHCCCEEEEec
Confidence 4788874 256899999999999999999999999999999999887653 25899999999998853
No 23
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=99.57 E-value=1.8e-15 Score=122.08 Aligned_cols=62 Identities=15% Similarity=0.275 Sum_probs=53.3
Q ss_pred ChhccccCCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeecc
Q psy6804 1 MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMD 71 (207)
Q Consensus 1 ~nAi~~~~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~ 71 (207)
+|||. +.++.|||||||+|||+||+++|+|+||++|||+..+. + .+.++|+++||++.+..+
T Consensus 47 InAIr---g~~L~GaTLYVTLEPC~MCAgAII~AGIkRVVYGa~~~-----G-~G~e~LreAGIEV~~L~~ 108 (278)
T 3g8q_A 47 RKLVR---RHDVEGKVVFVTARPCLYCARELAEAGVAGVVYLGRGR-----G-LGPYYLARSGVEVVEVHP 108 (278)
T ss_dssp HHHHH---HSCCTTCEEEESSCCCHHHHHHHHTTTCCEEEEEECSS-----C-CHHHHHHTTTCEEEEEEE
T ss_pred HHHhC---CCCCCCcEEEEeCCchHHHHHHHHHhCCCEEEEEecCC-----C-hhHHHHHHCCCEEEEecC
Confidence 36775 56789999999999999999999999999999998642 2 368999999999998644
No 24
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=99.56 E-value=2.4e-14 Score=107.39 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHHhhCCCC-CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---
Q psy6804 89 LEWHEYFMASAFLVAKRSKDP-VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--- 164 (207)
Q Consensus 89 ~~~~~~~m~~A~~~a~~s~~~-~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--- 164 (207)
...|+.+|+.|+++++++..+ +++|||+|++.||+|+ +|.|.. . .++ ++|||+.||.++
T Consensus 4 ~~~~~~L~~~A~~a~~~ay~~s~f~VGAal~~~dG~i~-~G~NvE-~-------------~~~--t~cAE~~Ai~~A~~~ 66 (130)
T 2z3g_A 4 SQEESTLIERATATINSIPISEDYSVASAALSSDGRIF-TGVNVY-H-------------FTG--GPCAELVVLGTAAAA 66 (130)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCSSSCEEEEEEETTSCEE-EEECCC-C-------------TTT--CCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEecCCeEE-EEeccc-c-------------CCc--ccCHHHHHHHHHHHc
Confidence 456778999999999998776 6899999999999998 699976 1 123 899999999986
Q ss_pred CCCCCCCcEEEE-----cccChHHHHHHHHHhCCCEEEEE
Q psy6804 165 NSADTKRCKLYT-----SLFPCNECAKVIIQSGIKEVIYM 199 (207)
Q Consensus 165 ~~~~~~~~~ly~-----T~ePC~~C~~ai~~agi~~vvy~ 199 (207)
+...++..++|+ +.+||.||.+.|.+.+-.-.|+.
T Consensus 67 G~~~~~~i~vv~~~~~~~~~PCG~Crq~l~e~~~~~~v~~ 106 (130)
T 2z3g_A 67 AAGNLTCIVAIGNENRGILSPCGRCRQVLLDLHPGIKAIV 106 (130)
T ss_dssp TCCCEEEEEEEETTTTEEECCCHHHHHHHHHHCTTCEEEE
T ss_pred CCCceEEEEEEECCCCCccCcCHHHHHHHHHhCCCCEEEE
Confidence 445677888998 68899999999999874433443
No 25
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.52 E-value=4.4e-15 Score=115.39 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=54.2
Q ss_pred ChhccccCCC---CCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804 1 MNAILNKNSA---DTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS 68 (207)
Q Consensus 1 ~nAi~~~~~~---~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~ 68 (207)
++||.++... +++|+|||||+|||+||+++|+++||++|||+..+++.. .+.++|+++||++..
T Consensus 68 ~~Ai~~a~~~~~~~~~~~tlYvT~EPC~mC~~ai~~agi~rVv~g~~~~~~g----~~~~~l~~~gi~v~~ 134 (161)
T 1p6o_A 68 ISTLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKS----KGEKYLQTRGHEVVV 134 (161)
T ss_dssp HHHHHHHCSCCHHHHTTEEEEEEECCCHHHHHHHHHHTCCEEEEEESSSCCC----THHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhCCccccccccccCCCCCHHHHHHHHHhCCCEEEEEecCCCCc----cHHHHHHhcCCEEEE
Confidence 4788886432 578999999999999999999999999999999876542 367889999999986
No 26
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=99.51 E-value=1.1e-14 Score=114.99 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=49.8
Q ss_pred Chhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccc
Q psy6804 1 MNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAA 62 (207)
Q Consensus 1 ~nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~ 62 (207)
++||.++ +..++.|+|||||+|||+||+++|+++||++|||+..+++....+. +.++|++.
T Consensus 68 ~~AI~~a~~~~~~~~l~g~tlYvTlEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g~-~~~~l~~~ 132 (179)
T 2nx8_A 68 MMAINEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDS-LYQILTDE 132 (179)
T ss_dssp HHHHHHHHHHHTSSCCTTEEEEEEECCBHHHHHHHHHTTCCEEEEEECCTTTBTTTT-SCCGGGCT
T ss_pred HHHHHHHHHHcCCCcccceEEEECCCCcHHHHHHHHHhCCCeEEEEEeCCCCccccc-HHHHhhcc
Confidence 3677764 3457899999999999999999999999999999999887765443 45677655
No 27
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=99.51 E-value=8e-15 Score=116.49 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=54.3
Q ss_pred ChhccccC---CCCCC-CcEEEEcCCCcHHHHHHHHHh-----CCCEEEEeccCCC-CCccchhhhhhhccceeeeeee
Q psy6804 1 MNAILNKN---SADTK-RCKLYTSLFPCNECAKVIIQS-----GIKEVIYMCDKHK-QKPATIASKRMFDAAKVHYWSE 69 (207)
Q Consensus 1 ~nAi~~~~---~~~~~-g~~lYvT~~PC~~Ca~~i~~~-----gI~~vv~~~~~~~-~~~~~~~~~~~l~~~gI~v~~~ 69 (207)
+|||.++. +.++. |+|||||+|||+||+++|+++ ||++|||+..++. +++....+.++|+++||++...
T Consensus 67 ~~Ai~~a~~~l~~~~~~g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~~~~~p~~~~g~~~L~~aGI~V~~~ 145 (190)
T 2nyt_A 67 EAFFNTILPAFDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLKEAGCKLRIM 145 (190)
T ss_pred HHHHHHHHHhcCccccCCeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecCCcCChHHHHHHHHHHHCCCEEEEe
Confidence 47887742 33555 999999999999999999999 9999999765442 2222336899999999999874
No 28
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.51 E-value=1.4e-14 Score=110.62 Aligned_cols=67 Identities=22% Similarity=0.360 Sum_probs=53.9
Q ss_pred Chhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhcc----ceeeeee
Q psy6804 1 MNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDA----AKVHYWS 68 (207)
Q Consensus 1 ~nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~----~gI~v~~ 68 (207)
++||.++ ++.++.|+|||||+|||+||+++|+++||++|||+..+++....+. +.++|++ .++++..
T Consensus 56 ~~Ai~~a~~~~~~~~~~~~tly~T~ePC~mC~~ai~~~~i~rvv~~~~~~~~~~~g~-~~~~~~~~~~~~~~~v~~ 130 (144)
T 2a8n_A 56 IAVIRMACEALGQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVES-GVRFFSQPTCHHAPDVYS 130 (144)
T ss_dssp HHHHHHHHHHHTCSCCTTCEEEEEECCBHHHHHHHHHTTCSEEEEEECCTTTBCSSS-TTCGGGSTTCCCCCEEEE
T ss_pred HHHHHHHHHHcCCCccCCeEEEECCCChHHHHHHHHHHCCCEEEEeecCCCccccch-HHHHHhccccCCCcEEEe
Confidence 3677764 4568999999999999999999999999999999999887765443 4667776 5666654
No 29
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=99.49 E-value=1.7e-14 Score=112.80 Aligned_cols=60 Identities=23% Similarity=0.331 Sum_probs=49.4
Q ss_pred hhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccc
Q psy6804 2 NAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAA 62 (207)
Q Consensus 2 nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~ 62 (207)
+||.++ +..++.|+|||||+|||+||+++|+++||++|||+..+++....+. +.++|++.
T Consensus 62 ~Ai~~a~~~~~~~~l~~~tlYvTlEPC~mC~~ai~~agi~rVv~g~~d~~~g~~g~-~~~~l~~~ 125 (168)
T 1z3a_A 62 MALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGS-LMDVLHHP 125 (168)
T ss_dssp HHHHHHHHHHTSSCCTTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTTCTBTT-SCBCTTCT
T ss_pred HHHHHHHHHcCCCcccccEEEEcCCCcHHHHHHHHHHCcCEEEEEecCCCccccch-hHHHhhcc
Confidence 577764 3457899999999999999999999999999999999888765443 45667665
No 30
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=99.49 E-value=2.4e-14 Score=112.11 Aligned_cols=67 Identities=27% Similarity=0.437 Sum_probs=53.6
Q ss_pred Chhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhcc----ceeeeee
Q psy6804 1 MNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDA----AKVHYWS 68 (207)
Q Consensus 1 ~nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~----~gI~v~~ 68 (207)
++||.++ ++.++.|+|||||+|||+||+++|+++||++|||+..+++....+. +.++|++ .++++..
T Consensus 75 ~~AI~~a~~~~g~~~l~~~tlYvT~EPC~mC~~ai~~agi~rVv~~~~d~~~g~~g~-~~~~l~~~~~~~~i~V~~ 149 (171)
T 1wwr_A 75 MLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVS-VFNILDEPTLNHRVKWEY 149 (171)
T ss_dssp HHHHHHHHHHHTCSCCTTEEEEESSCCBHHHHHHHHHTTCSEEEESSCCTTTBTTTT-SCCGGGCTTCSSCCEEEE
T ss_pred HHHHHHHHHHcCCCccCceEEEECCCChHHHHHHHHHHCCCEEEEEecCCCccccch-HHHHHhccccCCCcEEEE
Confidence 3677764 3567999999999999999999999999999999999887765443 4566764 6677665
No 31
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=99.48 E-value=2.3e-14 Score=111.10 Aligned_cols=59 Identities=31% Similarity=0.430 Sum_probs=48.6
Q ss_pred hhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhcc
Q psy6804 2 NAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDA 61 (207)
Q Consensus 2 nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~ 61 (207)
+||.++ ++.++.|+|||||+|||+||+++|+++||++|||+..+++....+. +.++|++
T Consensus 60 ~Ai~~a~~~~~~~~l~~~tlyvT~EPC~mC~~ai~~agi~rVv~~~~~~~~~~~g~-~~~~l~~ 122 (159)
T 2b3j_A 60 IAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGS-LMNLLQQ 122 (159)
T ss_dssp HHHHHHHHHHTSSCCTTEEEEEEECCCHHHHHHHHHTTCSEEEEEECCTTTCTBTT-SCBTTSC
T ss_pred HHHHHHHHHcCCCCcceeEEEECCCCcHHHHHHHHHhCCCeEEEEeeCCCcccccH-HHHHHhc
Confidence 577764 4567899999999999999999999999999999999887764433 4566666
No 32
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=99.45 E-value=1.4e-14 Score=115.93 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=44.7
Q ss_pred CCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccc-------hhhhhhhccceeeeee
Q psy6804 12 TKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPAT-------IASKRMFDAAKVHYWS 68 (207)
Q Consensus 12 ~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~-------~~~~~~l~~~gI~v~~ 68 (207)
+.|+|||||+|||+||+++|+++||++|||+..+++....+ ..+.+.|.+.++++..
T Consensus 102 ~~g~tlYvTlEPC~mCa~Aii~agI~rVv~g~~d~~~~~~G~~~~~~~~~~~~~l~~~~i~V~~ 165 (197)
T 2g84_A 102 LPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTT 165 (197)
T ss_dssp SCCEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTCEEEC
T ss_pred cCCEEEEEeCCCCHHHHHHHHHhCcCEEEEEecCCCccccCcccccchhHHHHHHhcCCCEEEe
Confidence 46799999999999999999999999999999876532221 1244567788888765
No 33
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=99.44 E-value=1.2e-14 Score=113.21 Aligned_cols=49 Identities=29% Similarity=0.464 Sum_probs=42.3
Q ss_pred Chhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCC
Q psy6804 1 MNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQK 49 (207)
Q Consensus 1 ~nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~ 49 (207)
++||.++ ++.++.|+|||||+|||+||+++|+++||++|||+..+++..
T Consensus 64 ~~AI~~a~~~~~~~~l~g~tlYvT~EPC~mCa~ai~~agI~rVv~g~~~~~~~ 116 (164)
T 1wkq_A 64 VTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAA 116 (164)
T ss_dssp HHHHHHHHHHHTSSSCTTEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCCcCceEEEEeCCChHHHHHHHHHHCCCEEEEEEcCCCcc
Confidence 3677774 456899999999999999999999999999999999876543
No 34
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=99.44 E-value=1.7e-14 Score=114.68 Aligned_cols=39 Identities=26% Similarity=0.462 Sum_probs=35.5
Q ss_pred CCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCC
Q psy6804 11 DTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQK 49 (207)
Q Consensus 11 ~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~ 49 (207)
.+.|+|||||+|||+||+++|+++||++|||+..++...
T Consensus 98 ~l~g~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~g 136 (189)
T 3dh1_A 98 VFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFG 136 (189)
T ss_dssp HHTTEEEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTB
T ss_pred ccCCeEEEEeCCChHHHHHHHHHhCCCEEEEEecCCCcc
Confidence 478999999999999999999999999999999876543
No 35
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.41 E-value=6.2e-14 Score=122.37 Aligned_cols=66 Identities=29% Similarity=0.429 Sum_probs=58.1
Q ss_pred ChhccccCCCCCCCcEEEEcCCCc------HHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804 1 MNAILNKNSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS 68 (207)
Q Consensus 1 ~nAi~~~~~~~~~g~~lYvT~~PC------~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~ 68 (207)
+|||.++. ..++|+|||||+||| +||+++|+++||++|||+..++++...+. +.++|+++||++..
T Consensus 64 ~~Ai~~a~-~~~~g~tlyvTlePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~~~~g~-~~~~l~~~gi~v~~ 135 (373)
T 2b3z_A 64 VHAIHMAG-AHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGR-GISMMKEAGIEVRE 135 (373)
T ss_dssp HHHHHHHG-GGGTTCEEEESSCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTH-HHHHHHTTTCEEEE
T ss_pred HHHHHHhh-HhcCCeEEEEeCCCccCcCCChHHHHHHHHhCCCEEEEEecccchhhhhH-HHHHHHhCCeEEEe
Confidence 47888874 578999999999999 79999999999999999999988766554 78899999999976
No 36
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.40 E-value=7.6e-14 Score=121.28 Aligned_cols=66 Identities=24% Similarity=0.353 Sum_probs=57.4
Q ss_pred Chhcccc--CCCCCCCcEEEEcCCCc------HHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804 1 MNAILNK--NSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS 68 (207)
Q Consensus 1 ~nAi~~~--~~~~~~g~~lYvT~~PC------~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~ 68 (207)
+|||+++ .+.++.|+|||||+||| +||+++|+++||++|||+..++++ ..+. +.++|+++||++..
T Consensus 64 ~~Ai~~a~~~~~~~~g~tlYvTlEPC~h~g~t~~C~~ai~~agi~rVv~~~~d~~~-~~g~-g~~~l~~~gi~v~~ 137 (360)
T 2hxv_A 64 RMAIESARKKGEDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGN-GVEKFRNHGIEVIE 137 (360)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEEECCCCSCSSSCCHHHHHHHHTCCEEEEEECCCCG-GGCC-HHHHHHTTTCEEEE
T ss_pred HHHHHHHHhcCCCcCCcEEEEecCcccccCCCHHHHHHHHHhCCCEEEEEecCchh-hhhh-HHHHHHhCCcEEEE
Confidence 4788886 25689999999999999 699999999999999999998877 4443 78899999999976
No 37
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=99.37 E-value=1.3e-12 Score=99.27 Aligned_cols=96 Identities=19% Similarity=0.119 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CCC
Q psy6804 91 WHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NSA 167 (207)
Q Consensus 91 ~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~~ 167 (207)
+|+.+|+.|+++++++..|..+|||+|+++||+|+ +|+|-.... .++ ++|||..||.++ +..
T Consensus 3 ~~~~L~~~A~~a~~~ayaPyS~VGAAl~~~dG~i~-~G~NvEnas------------~~~--~lcAEr~Ai~~a~~~G~~ 67 (142)
T 3b8f_A 3 IEQQLYDVVKQLIEQRYPNDWGGAAAIRVEDGTIY-TSVAPDVIN------------AST--ELCMETGAILEAHKFQKK 67 (142)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEEEEEEETTSCEE-EECCCCCSS------------GGG--CCCTTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEEeCCCcEE-EEECccccc------------CCc--ccCHHHHHHHHHHHCCCC
Confidence 57889999999999999884499999999999988 899975431 223 899999999986 333
Q ss_pred CCCCcEEEE--------cccChHHHHHHHHHhCCCEEEEEec
Q psy6804 168 DTKRCKLYT--------SLFPCNECAKVIIQSGIKEVIYMCD 201 (207)
Q Consensus 168 ~~~~~~ly~--------T~ePC~~C~~ai~~agi~~vvy~~~ 201 (207)
.+....++. +..||.+|.+.|.+.+-.-.|+...
T Consensus 68 ~~~~~~v~~~~~~~~~~~~sPCG~CRq~l~e~~~~~~v~~~~ 109 (142)
T 3b8f_A 68 VTHSICLARENEHSELKVLSPCGVCQERLFYWGPEVQCAITN 109 (142)
T ss_dssp EEEEEEEEESSTTSCCEECCCCHHHHHHHGGGCTTCEEECCC
T ss_pred cEEEEEEEecCCCCCCCCCCcHHHHHHHHHHhCCCCEEEEEC
Confidence 345556665 3459999999999998655555443
No 38
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.35 E-value=1.2e-13 Score=121.72 Aligned_cols=66 Identities=18% Similarity=0.318 Sum_probs=57.3
Q ss_pred ChhccccCCCCCCCcEEEEcCCCc------HHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804 1 MNAILNKNSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS 68 (207)
Q Consensus 1 ~nAi~~~~~~~~~g~~lYvT~~PC------~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~ 68 (207)
+|||.++. ..++|+|||||+||| +||+++|+++||++|||+..++++...+. +.++|+++||++..
T Consensus 80 ~~Ai~~a~-~~~~g~tlyvt~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~~~~g~-g~~~l~~~gi~v~~ 151 (402)
T 2g6v_A 80 VHALRMAG-EKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGR-GLYRLQQAGIDVSH 151 (402)
T ss_dssp HHHHHHHG-GGGGSSCEEESSCCC-------CCHHHHHHTTCSCEEESSCCCSCSSSTT-HHHHHHHTTCCEEE
T ss_pred HHHHHHhh-HhcCCeEEEEeCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCccccch-HHHHHHhCCcEEEe
Confidence 47888874 568999999999999 69999999999999999999988766554 78899999999976
No 39
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=99.34 E-value=4.4e-12 Score=106.95 Aligned_cols=155 Identities=13% Similarity=0.150 Sum_probs=100.0
Q ss_pred CCcEEEEcCCCcHHHHHHHHHhC--CC-EEEEeccCCCCCccchhhhhhhccceeeeeeecccccCccCCCCCCCCcCch
Q psy6804 13 KRCKLYTSLFPCNECAKVIIQSG--IK-EVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDKMNGVQNGSPHKRVDDVL 89 (207)
Q Consensus 13 ~g~~lYvT~~PC~~Ca~~i~~~g--I~-~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 89 (207)
+-..|.|+..||-+|.+.|.+.+ -. +|+.... +. . .-.++|-..- .... +.....++.+-...-.
T Consensus 118 ~~~~iav~~~PCG~CRQ~l~E~~~~~~~~i~~~~~--~~--~--~l~eLLP~~F-~~~~-l~~~~~ll~~~~~~~~---- 185 (294)
T 1ctt_A 118 ALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGR--EA--H--ALRDYLPDAF-GPKD-LEIKTLLMDEQDHGYA---- 185 (294)
T ss_dssp CEEEEEESSCCCHHHHHHHTTBTTGGGCEEECTTS--CC--E--EHHHHSTTCC-CGGG-GTCCCCBTSCCCCCCC----
T ss_pred cEEEEEEEcCCCHHHHHHHHHhCCCCCeEEEEECC--CC--C--cHHHhCCCCC-Chhh-cCcchhcccccccccc----
Confidence 45678889999999999999986 12 3332221 11 1 1122222110 0000 0000111111111111
Q ss_pred hHHHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--C
Q psy6804 90 EWHEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--N 165 (207)
Q Consensus 90 ~~~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~ 165 (207)
-.++.+++.|+++++++..| +.+|||+|++.||+|+ +|.|-.... .++ ++|||..||..+ .
T Consensus 186 ~~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-tG~NvEnas------------y~~--tlCAEr~Ai~~av~~ 250 (294)
T 1ctt_A 186 LTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIF-SGSYAENAA------------FNP--TLPPLQGALILLNLK 250 (294)
T ss_dssp CCSSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTT------------STT--CBCHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEeeecCC------------CCC--ccCHHHHHHHHHHHc
Confidence 12357999999999999987 7999999999999876 899976432 234 899999999986 3
Q ss_pred C---CCCCCcEEEEccc----ChHHHHHHHHHhCCC
Q psy6804 166 S---ADTKRCKLYTSLF----PCNECAKVIIQSGIK 194 (207)
Q Consensus 166 ~---~~~~~~~ly~T~e----PC~~C~~ai~~agi~ 194 (207)
+ ..++...++.+.+ ||.+|.+.|.+.+-.
T Consensus 251 G~~~~~i~~i~vv~~~~~~~sPCG~CRq~L~ef~~~ 286 (294)
T 1ctt_A 251 GYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCH 286 (294)
T ss_dssp TCCGGGEEEEEEEECTTCSSCCHHHHHHHHHHHTCC
T ss_pred CCCcCCEEEEEEEecCCCCcCccHHHHHHHHHHCCC
Confidence 3 3577888988877 999999999998743
No 40
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=99.27 E-value=3.7e-11 Score=91.26 Aligned_cols=86 Identities=23% Similarity=0.257 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CC
Q psy6804 92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NS 166 (207)
Q Consensus 92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~ 166 (207)
++.+++.|+++++++..| +++|||+|++.||+|+ +|.|-.... .++ ++|||..||..+ +.
T Consensus 11 ~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-~G~NvEnas------------y~~--t~cAEr~Ai~~a~~~G~ 75 (142)
T 1r5t_A 11 LEALKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENAS------------YSN--CICAERSAMIQVLMAGH 75 (142)
T ss_dssp HHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSS------------GGG--CBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCCEE-EEEeecccC------------CCC--CcCHHHHHHHHHHHcCC
Confidence 467999999999999987 7899999999999988 799975431 123 899999999986 33
Q ss_pred CC-CCCcEEEEc----c-cChHHHHHHHHHhC
Q psy6804 167 AD-TKRCKLYTS----L-FPCNECAKVIIQSG 192 (207)
Q Consensus 167 ~~-~~~~~ly~T----~-ePC~~C~~ai~~ag 192 (207)
.. ++...++.. . .||.+|.+.|.+.+
T Consensus 76 ~~~i~~i~vv~~~~~~~~~PCG~CRq~l~e~~ 107 (142)
T 1r5t_A 76 RSGWKCMVICGDSEDQCVSPCGVCRQFINEFV 107 (142)
T ss_dssp CSCCCEEEEEESCSSSCCCCCHHHHHHHHTTS
T ss_pred CCceEEEEEEeCCCCcccCHHHHHHHHHHHhC
Confidence 34 788888874 4 89999999999986
No 41
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=99.26 E-value=3.3e-11 Score=91.28 Aligned_cols=86 Identities=20% Similarity=0.322 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CC
Q psy6804 92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NS 166 (207)
Q Consensus 92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~ 166 (207)
++.+++.|.++++++..| +++|||+|++.||+|+ +|.|-.... ... ++|||..||.++ +.
T Consensus 12 ~~~L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~-~G~NvEnas------------y~~--t~CAEr~Ai~~Avs~G~ 76 (141)
T 2d30_A 12 SKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENAS------------YGL--CNCAERTALFKAVSEGD 76 (141)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEE-EEECBCCSS------------GGG--CBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCEE-EeeccccCC------------CCc--ccCHHHHHHHHHHHCCC
Confidence 456899999999999987 7899999999999987 999975431 112 799999999986 33
Q ss_pred CCCCCcEEEEc----ccChHHHHHHHHHhC
Q psy6804 167 ADTKRCKLYTS----LFPCNECAKVIIQSG 192 (207)
Q Consensus 167 ~~~~~~~ly~T----~ePC~~C~~ai~~ag 192 (207)
..+....++.. ..||.+|.+.|.+.+
T Consensus 77 ~~~~aiav~~~~~~~~~PCG~CRQ~l~E~~ 106 (141)
T 2d30_A 77 KEFVAIAIVADTKRPVPPCGACRQVMVELC 106 (141)
T ss_dssp CCEEEEEEEESCSSCCCCCHHHHHHHHHHS
T ss_pred CceEEEEEEeCCCCccCcCHHHHHHHHHhc
Confidence 44445555554 679999999999986
No 42
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=99.18 E-value=6.3e-11 Score=89.36 Aligned_cols=88 Identities=22% Similarity=0.300 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CCC
Q psy6804 93 EYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NSA 167 (207)
Q Consensus 93 ~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~~ 167 (207)
+.+++.|.++++++..| +++|||+|++.||+|+ +|.|-.... ... ++|||..||.++ +..
T Consensus 11 ~~L~~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~-~G~NvEnas------------y~~--t~CAEr~Ai~~Av~~G~~ 75 (138)
T 3r2n_A 11 DTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLI-TGVNVENAS------------YGL--ALCAECSMISALYATGGG 75 (138)
T ss_dssp HHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSS------------GGG--CBCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCcEE-EEEcccccC------------CCC--CcCHHHHHHHHHHHcCCC
Confidence 45899999999999887 7899999999999987 999976431 112 799999999986 333
Q ss_pred CCCCcEEEEc------ccChHHHHHHHHHhCCCEEE
Q psy6804 168 DTKRCKLYTS------LFPCNECAKVIIQSGIKEVI 197 (207)
Q Consensus 168 ~~~~~~ly~T------~ePC~~C~~ai~~agi~~vv 197 (207)
.+. .++++ ..||.+|.+.|.+.+-..|+
T Consensus 76 ~i~--aiav~~~~~~~~~PCG~CRQ~l~E~~~~~i~ 109 (138)
T 3r2n_A 76 RLV--AVYCVDGNGDSLMPCGRCRQLLYEHGGPELK 109 (138)
T ss_dssp CEE--EEEEECTTSCBCCCCHHHHHHHHHHHCTTCE
T ss_pred ceE--EEEEEcCCCCcCCCCHHHHHHHHHhCCCCEE
Confidence 333 35555 68999999999997633343
No 43
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=98.97 E-value=1.4e-09 Score=82.88 Aligned_cols=90 Identities=22% Similarity=0.311 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CCC
Q psy6804 93 EYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NSA 167 (207)
Q Consensus 93 ~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~~ 167 (207)
+.+++.|.++++++..| +++|||+|...||+|+ +|.|-.... ... ++|||..||.++ +..
T Consensus 26 ~~L~~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~-tG~NvEnas------------y~~--t~CAEr~Ai~~Avs~G~~ 90 (150)
T 3mpz_A 26 NALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTV-TGCNVENVS------------YGL--GLCAECAVVCALHSGGGG 90 (150)
T ss_dssp HHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSS------------GGG--CBCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCEE-EEEeccccc------------CCc--cccHHHHHHHHHHHcCCC
Confidence 55999999999999876 7899999999999998 999976431 112 799999999986 333
Q ss_pred CCCCcEEEE----cccChHHHHHHHHHhC-CCEEE
Q psy6804 168 DTKRCKLYT----SLFPCNECAKVIIQSG-IKEVI 197 (207)
Q Consensus 168 ~~~~~~ly~----T~ePC~~C~~ai~~ag-i~~vv 197 (207)
.+....++. ...||.+|.+.|.+.+ ..-+|
T Consensus 91 ~i~aiavv~~~~~~~~PCG~CRQ~L~Ef~~~~v~v 125 (150)
T 3mpz_A 91 RLVALSCVGPDGGVLMPCGRCRQVLLEHGGPELLI 125 (150)
T ss_dssp CEEEEEEECTTSCBCCCCHHHHHHHHHHHCTTCEE
T ss_pred ceEEEEEEcCCCCccCCCHHHHHHHHHhCCCCEEE
Confidence 444433332 2579999999999975 44333
No 44
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=98.89 E-value=3.4e-09 Score=89.28 Aligned_cols=90 Identities=22% Similarity=0.283 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--
Q psy6804 89 LEWHEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK-- 164 (207)
Q Consensus 89 ~~~~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~-- 164 (207)
++|++.++..|.++..++..| +++|||+|++.||+|+ +|.|-...+-. ... ++|||..||.++
T Consensus 47 ~~~~~ll~~~a~~a~~~AyaPyS~f~VGAall~~dG~i~-~G~NvEnas~~----------~~~--t~CAEr~Ai~~A~~ 113 (294)
T 1ctt_A 47 LDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGAT----------MQQ--TVHAEQSAISHAWL 113 (294)
T ss_dssp CCHHHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSC----------GGG--CBCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCccCCCcEEEEEEeCCCCEE-EEEcCCccCcc----------CCC--ccCHHHHHHHHHHH
Confidence 357777777788888888887 8999999999999987 99997643100 011 799999999986
Q ss_pred CCCCCCCcEEEEcccChHHHHHHHHHhC
Q psy6804 165 NSADTKRCKLYTSLFPCNECAKVIIQSG 192 (207)
Q Consensus 165 ~~~~~~~~~ly~T~ePC~~C~~ai~~ag 192 (207)
.+.. .-..+.++..||.+|.+.|.+.+
T Consensus 114 ~G~~-~~~~iav~~~PCG~CRQ~l~E~~ 140 (294)
T 1ctt_A 114 SGEK-ALAAITVNYTPCGHCRQFMNELN 140 (294)
T ss_dssp TTCC-CEEEEEESSCCCHHHHHHHTTBT
T ss_pred cCCC-cEEEEEEEcCCCHHHHHHHHHhC
Confidence 2221 23566788999999999999986
No 45
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=98.87 E-value=1.6e-08 Score=76.06 Aligned_cols=86 Identities=23% Similarity=0.388 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--CCC
Q psy6804 92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--NSA 167 (207)
Q Consensus 92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~~~ 167 (207)
+..+++.|.++.+++..| +++|||+|.+.||+|+ +|.|-..... .. ++|||..||.++ .+.
T Consensus 11 ~~~L~~~A~~a~~~AyaPYS~F~VGAAll~~dG~iy-tG~NVEnasy------------~~--t~CAEr~Ai~~Avs~G~ 75 (138)
T 3dmo_A 11 HHALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVF-HGCNVENASY------------GL--CNCAERTALFSALAAGY 75 (138)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSG------------GG--CBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccCCcCCCCEEEEEEeCCCCEE-EEEeeccccc------------cc--ccCHHHHHHHHHHHcCC
Confidence 677899999999999987 7899999999999987 9999764310 11 799999999986 222
Q ss_pred ---CCCCcEEEEc----ccChHHHHHHHHHhC
Q psy6804 168 ---DTKRCKLYTS----LFPCNECAKVIIQSG 192 (207)
Q Consensus 168 ---~~~~~~ly~T----~ePC~~C~~ai~~ag 192 (207)
.++...+... ..||..|.+.|.+.+
T Consensus 76 ~~~~i~aiavv~~~~~~~~PCG~CRQ~l~Ef~ 107 (138)
T 3dmo_A 76 RPGEFAAIAVVGETHGPIAPCGACRQVMIELG 107 (138)
T ss_dssp CTTCEEEEEEEESCSSSCCCCHHHHHHHHHHH
T ss_pred CcccEEEEEEEcCCCCccCCCHHHHHHHHHhC
Confidence 3433333222 469999999999974
No 46
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=98.77 E-value=9e-08 Score=73.49 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=64.5
Q ss_pred chhHHHHHHHHHHHHHhhCCCCC-CceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--
Q psy6804 88 VLEWHEYFMASAFLVAKRSKDPV-TRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK-- 164 (207)
Q Consensus 88 ~~~~~~~~m~~A~~~a~~s~~~~-~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~-- 164 (207)
....++.+++.|.++.+++.-.+ ++|||+|.+.||+|+ +|.|-..- .. ++|||..||.++
T Consensus 27 L~~ed~~Li~~A~~a~~~~PyS~~f~VGAAll~~dG~i~-tG~NVEn~--------------~~--~lCAEr~Ai~~Avs 89 (158)
T 3oj6_A 27 LSAAGQNLIDTATSVINGIPVSDFYSVASAAISDDGRVF-SGVNVYHF--------------NG--GPCAELVVLGVAAA 89 (158)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCSSSCEEEEEEETTSCEE-EEECCCCT--------------TT--CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCCCEE-EEEccccC--------------Cc--cccHHHHHHHHHHH
Confidence 44567889999999987643223 799999999999988 99997421 01 789999999986
Q ss_pred -CCCCCCCcEEEEc-----ccChHHHHHHHHHhCCC
Q psy6804 165 -NSADTKRCKLYTS-----LFPCNECAKVIIQSGIK 194 (207)
Q Consensus 165 -~~~~~~~~~ly~T-----~ePC~~C~~ai~~agi~ 194 (207)
+...+....+... ..||..|.+.|.+.+-.
T Consensus 90 ~G~~~~~ai~vv~~~~~~~~~PCG~CRQvL~Ef~~~ 125 (158)
T 3oj6_A 90 AGATKLTHIVAIANEGRGILSPCGRCRQVLADLHPG 125 (158)
T ss_dssp TTCCCEEEEEEEETTTTEEECCCHHHHHHHHHHSTT
T ss_pred hCCCceEEEEEEeCCCCCcCCCCHHHHHHHHHhCCC
Confidence 2223322222322 35999999999998643
No 47
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=98.60 E-value=1.7e-07 Score=78.78 Aligned_cols=153 Identities=10% Similarity=0.091 Sum_probs=92.4
Q ss_pred CcEEEEcCCCcHHHHHHHHHhCCC---EEEEeccCCCCCccchhhhhhhccceeeeeeecccccCccCCCCCCCCcCchh
Q psy6804 14 RCKLYTSLFPCNECAKVIIQSGIK---EVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDKMNGVQNGSPHKRVDDVLE 90 (207)
Q Consensus 14 g~~lYvT~~PC~~Ca~~i~~~gI~---~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~ 90 (207)
=..|.|...||-+|-+.|.+.+-. +|+... ... . .-.++|-..- .... +.....++.+-...-. ...
T Consensus 122 i~~iav~~~PCG~CRQ~l~Ef~~~~~~~v~~~~--~~~--~--~l~eLLP~~F-~~~~-L~~~~~ll~~~~~~~~--~~~ 191 (298)
T 4eg2_A 122 VADITINFSPCGHCRQFMNELTTASSLKIQLPK--RAA--K--TLQEYLPESF-GPAD-LGIDSGLMSPVNHGKT--SDD 191 (298)
T ss_dssp EEEEEESSCCCHHHHHHHTTBTTTTTCEEECSS--SCC--E--EHHHHSTTCC-CGGG-GTCCCCBTSCCCCCCC--CCC
T ss_pred eEEEEeecCCCHHHHHHHHHhcCCCceEEEeCC--Cce--e--EHHHhCCCCC-Chhh-cCCchhhccccCCCCc--cCC
Confidence 346777899999999999998642 333321 111 1 0122221110 0000 0000011111111111 112
Q ss_pred HHHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--CC
Q psy6804 91 WHEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--NS 166 (207)
Q Consensus 91 ~~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~~ 166 (207)
| +.+++.|+++++++..| +.+|||+|.++||+|+ +|.|-... ..++ +++||..||.++ .+
T Consensus 192 ~-~~L~~~A~~a~~~ayaPYS~~~vGAAl~t~dG~iy-tG~nvEnA------------ay~~--slcAEr~Al~~av~~G 255 (298)
T 4eg2_A 192 D-EELIQQALRAMNISHSPYTQNFSGVALKMRSGAIY-LGAYAENA------------AFNP--SLPPLQVALAQAMMMG 255 (298)
T ss_dssp C-CHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCT------------TSTT--CBCHHHHHHHHHHHTT
T ss_pred H-HHHHHHHHHHHHhccCCccCCCeEEEEEeCCCCEE-EEEeeecc------------ccCC--CCCHHHHHHHHHHHCC
Confidence 2 35889999999999887 7899999999999987 99997543 1234 899999999986 33
Q ss_pred C---CCCCcEEEEc----ccChHHHHHHHHHhC
Q psy6804 167 A---DTKRCKLYTS----LFPCNECAKVIIQSG 192 (207)
Q Consensus 167 ~---~~~~~~ly~T----~ePC~~C~~ai~~ag 192 (207)
. .++...+.-. ..||..|...|.+.+
T Consensus 256 ~~~~~i~aiv~v~~~~~~~sPCG~CRqvL~e~~ 288 (298)
T 4eg2_A 256 ESFEDIEAAALVESATGKISHLADTQATLEVIN 288 (298)
T ss_dssp CCGGGEEEEEEEECTTCSSCCHHHHHHHHHHHC
T ss_pred CCccCeEEEEEEeCCCCCcCCcHHHHHHHHHhC
Confidence 3 3444444443 359999999999876
No 48
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=98.30 E-value=1.7e-06 Score=72.66 Aligned_cols=87 Identities=21% Similarity=0.259 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CC
Q psy6804 92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NS 166 (207)
Q Consensus 92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~ 166 (207)
++..+..+-.++.++..| +++|||++...||+|+ +|.|-...+-.. .. ++|||..||.++ +.
T Consensus 53 ~el~~~l~~~A~~~AyaPyS~F~VGAAll~~dG~i~-~G~NvEna~as~----------~~--t~CAEr~Ai~~Av~~G~ 119 (298)
T 4eg2_A 53 ADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLY-LGANMEFTGAQL----------GQ--TVHAEQCAISHAWMKGE 119 (298)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCG----------GG--CBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhCcCCcCCCcEEEEEEECCCcEE-EEEccccccccc----------Cc--cccHHHHHHHHHHhCCC
Confidence 455566667777788887 7899999999999987 999976421000 01 799999999986 22
Q ss_pred CCCCCcEEEEcccChHHHHHHHHHhCC
Q psy6804 167 ADTKRCKLYTSLFPCNECAKVIIQSGI 193 (207)
Q Consensus 167 ~~~~~~~ly~T~ePC~~C~~ai~~agi 193 (207)
..+ ..+.+...||..|.+.|.+.+-
T Consensus 120 ~~i--~~iav~~~PCG~CRQ~l~Ef~~ 144 (298)
T 4eg2_A 120 KGV--ADITINFSPCGHCRQFMNELTT 144 (298)
T ss_dssp SCE--EEEEESSCCCHHHHHHHTTBTT
T ss_pred Cce--EEEEeecCCCHHHHHHHHHhcC
Confidence 222 3466778999999999999864
No 49
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=96.28 E-value=0.0047 Score=48.87 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=42.2
Q ss_pred CcEEEEcCCCcHHHHHHHHHh-----CCCEEEE-eccCCCCCccchhhhhhhccceeeeeeec
Q psy6804 14 RCKLYTSLFPCNECAKVIIQS-----GIKEVIY-MCDKHKQKPATIASKRMFDAAKVHYWSEM 70 (207)
Q Consensus 14 g~~lYvT~~PC~~Ca~~i~~~-----gI~~vv~-~~~~~~~~~~~~~~~~~l~~~gI~v~~~~ 70 (207)
.-|-|+|.+||+.||..|+.. +++=.+| +..|.. .+...+|.+.|.++|+.+..+.
T Consensus 101 ~vTwy~SWSPC~~CA~~v~~FL~~~~~v~L~If~aRLY~~-~~~~~~gLr~L~~aG~~v~iM~ 162 (203)
T 3v4k_A 101 RVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTARIYDD-QGRCQEGLRTLAEAGAKISIMT 162 (203)
T ss_pred EEEEEEeCCChHHHHHHHHHHHhhCCCeEEEEEEEeeccc-CchHHHHHHHHHHCCCeEEecC
Confidence 457899999999999999975 5665555 355543 3445568999999999997743
No 50
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=96.28 E-value=0.0031 Score=49.44 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=44.6
Q ss_pred CcEEEEcCCCcHHHHHHHHHh-----CCCEEEE-eccCCCCCccchhhhhhhccceeeeeee
Q psy6804 14 RCKLYTSLFPCNECAKVIIQS-----GIKEVIY-MCDKHKQKPATIASKRMFDAAKVHYWSE 69 (207)
Q Consensus 14 g~~lYvT~~PC~~Ca~~i~~~-----gI~~vv~-~~~~~~~~~~~~~~~~~l~~~gI~v~~~ 69 (207)
.-|-|+|-+||+.||+.|+.. +++=.|| +..|.-+++....|.+.|.++|+.+...
T Consensus 87 ~VTwy~SwSPC~~CA~~va~FL~~~~~v~L~If~aRLY~~~~~~~q~gLr~L~~~G~~v~iM 148 (190)
T 3vow_A 87 QVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIM 148 (190)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHCTTEEEEEEEEECTTTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred EEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEEEEecccccCchHHHHHHHHHHCCCcEEEe
Confidence 358899999999999999875 5665555 6667666666667999999999999764
No 51
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=95.88 E-value=0.0048 Score=45.92 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=24.9
Q ss_pred CCCCCCCcEEEEc----CCCcHHHHHHHHHhC
Q psy6804 8 NSADTKRCKLYTS----LFPCNECAKVIIQSG 35 (207)
Q Consensus 8 ~~~~~~g~~lYvT----~~PC~~Ca~~i~~~g 35 (207)
+...+..+++|++ ++||.||.++|.+.+
T Consensus 66 G~~~~~~~~l~~~~~~~~~PCg~Crq~l~e~~ 97 (136)
T 1uwz_A 66 GDTEFQMLAVAADTPGPVSPCGACRQVISELC 97 (136)
T ss_dssp TCCCEEEEEEEESCSSSCCCCHHHHHHHHHHS
T ss_pred CCCCeEEEEEEeCCCCccCHHHHHHHHHHHcC
Confidence 4567889999996 899999999999997
No 52
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=94.90 E-value=0.017 Score=43.40 Aligned_cols=28 Identities=21% Similarity=0.536 Sum_probs=24.9
Q ss_pred CCCCCCCcEEEEc-----CCCcHHHHHHHHHhC
Q psy6804 8 NSADTKRCKLYTS-----LFPCNECAKVIIQSG 35 (207)
Q Consensus 8 ~~~~~~g~~lYvT-----~~PC~~Ca~~i~~~g 35 (207)
+...++..++|.+ .+||.+|.+.|.+.+
T Consensus 78 G~~~l~~i~v~~~~~~~~~~PCG~Crq~l~E~~ 110 (146)
T 2fr5_A 78 GYKDFRAIAISSDLQEEFISPCGACRQVMREFG 110 (146)
T ss_dssp TCCCEEEEEEEESCSSSCCCCCHHHHHHHHHTC
T ss_pred CCCceEEEEEEeCCCCcccCCCHHHHHHHHHhC
Confidence 4457889999998 899999999999997
No 53
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=94.07 E-value=0.042 Score=43.45 Aligned_cols=40 Identities=25% Similarity=0.206 Sum_probs=31.2
Q ss_pred CChHHHHHHHccCCCCC-----CCcEEEEcccChHHHHHHHHHhC
Q psy6804 153 MCHAEMNAILNKNSADT-----KRCKLYTSLFPCNECAKVIIQSG 192 (207)
Q Consensus 153 ~~HAE~~Ai~~~~~~~~-----~~~~ly~T~ePC~~C~~ai~~ag 192 (207)
..|||+.-|.+.....+ -.-|.|+|-.||+.|+..|+..-
T Consensus 78 ~~HAEl~FL~~~~~~~Ld~~~~Y~vTwy~SWSPC~~CA~~v~~FL 122 (203)
T 3v4k_A 78 GRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFI 122 (203)
T ss_pred CCcHHHHHHHHhhhccCCCCCeEEEEEEEeCCChHHHHHHHHHHH
Confidence 57999999987532222 25778999999999999998753
No 54
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=94.05 E-value=0.03 Score=41.18 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=24.8
Q ss_pred CCCCCCCcEEEE-----cCCCcHHHHHHHHHhCCC
Q psy6804 8 NSADTKRCKLYT-----SLFPCNECAKVIIQSGIK 37 (207)
Q Consensus 8 ~~~~~~g~~lYv-----T~~PC~~Ca~~i~~~gI~ 37 (207)
+...++..++|. +++||.||.+.|.+.+-.
T Consensus 67 G~~~~~~i~vv~~~~~~~~~PCG~Crq~l~e~~~~ 101 (130)
T 2z3g_A 67 AAGNLTCIVAIGNENRGILSPCGRCRQVLLDLHPG 101 (130)
T ss_dssp TCCCEEEEEEEETTTTEEECCCHHHHHHHHHHCTT
T ss_pred CCCceEEEEEEECCCCCccCcCHHHHHHHHHhCCC
Confidence 335788899998 689999999999999733
No 55
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=92.53 E-value=0.12 Score=40.48 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=30.2
Q ss_pred CChHHHHHHHccCCCCCC-----CcEEEEcccChHHHHHHHHHh
Q psy6804 153 MCHAEMNAILNKNSADTK-----RCKLYTSLFPCNECAKVIIQS 191 (207)
Q Consensus 153 ~~HAE~~Ai~~~~~~~~~-----~~~ly~T~ePC~~C~~ai~~a 191 (207)
..|||+.=|.+.....+. .-|.|+|-.||..|+..|+..
T Consensus 64 ~~HAE~~Fl~~~~~~~L~~~~~y~VTwy~SwSPC~~CA~~va~F 107 (190)
T 3vow_A 64 HCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEF 107 (190)
T ss_dssp GGSHHHHHHHHHSSTTSCTTSEEEEEEEEEECCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHhhcCCCCCceEEEEEEEeCCchHHHHHHHHHH
Confidence 589999999875322222 368899999999999998763
No 56
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=82.24 E-value=0.49 Score=35.11 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=21.7
Q ss_pred CCCCcEEEE--------cCCCcHHHHHHHHHhCCCEEEE
Q psy6804 11 DTKRCKLYT--------SLFPCNECAKVIIQSGIKEVIY 41 (207)
Q Consensus 11 ~~~g~~lYv--------T~~PC~~Ca~~i~~~gI~~vv~ 41 (207)
.++...++. ++.||.+|.+.|.+.|-.-.|+
T Consensus 68 ~~~~~~v~~~~~~~~~~~~sPCG~CRq~l~e~~~~~~v~ 106 (142)
T 3b8f_A 68 VTHSICLARENEHSELKVLSPCGVCQERLFYWGPEVQCA 106 (142)
T ss_dssp EEEEEEEEESSTTSCCEECCCCHHHHHHHGGGCTTCEEE
T ss_pred cEEEEEEEecCCCCCCCCCCcHHHHHHHHHHhCCCCEEE
Confidence 345556665 4569999999999998443344
No 57
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=77.49 E-value=1.8 Score=32.00 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.2
Q ss_pred CCCcEEEEc----C-CCcHHHHHHHHHhC
Q psy6804 12 TKRCKLYTS----L-FPCNECAKVIIQSG 35 (207)
Q Consensus 12 ~~g~~lYvT----~-~PC~~Ca~~i~~~g 35 (207)
++..++|.. . .||-+|.+.|.+.+
T Consensus 79 i~~i~vv~~~~~~~~~PCG~CRq~l~e~~ 107 (142)
T 1r5t_A 79 WKCMVICGDSEDQCVSPCGVCRQFINEFV 107 (142)
T ss_dssp CCEEEEEESCSSSCCCCCHHHHHHHHTTS
T ss_pred eEEEEEEeCCCCcccCHHHHHHHHHHHhC
Confidence 888899984 5 89999999999986
No 58
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=76.69 E-value=14 Score=33.08 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCCCCCCCcEE
Q psy6804 95 FMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKL 174 (207)
Q Consensus 95 ~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~l 174 (207)
=|..|+...+.-+.. |+++-+||..|+.|..+.. -+|+-..|+.++ +..++|+.|
T Consensus 413 dL~fAw~v~K~vkSN-----AIv~akdg~tvGiGaGQ~s-------------------RV~s~r~A~~kA-g~~~~G~vl 467 (523)
T 3zzm_A 413 DLVFAWRACRAVKSN-----AIVIAADGATVGVGMGQVN-------------------RVDAARLAVERG-GERVRGAVA 467 (523)
T ss_dssp HHHHHHHHGGGSCSS-----CEEEEETTEEEEEECSCSS-------------------HHHHHHHHHHHH-GGGCTTCEE
T ss_pred HHHHHHHHHHhccCc-----eEEEEECCeEEEECCCCcc-------------------hHHHHHHHHHHh-ccccCCeEE
Confidence 366677777654421 3445589999999999874 379999999998 566789998
Q ss_pred EEcc-cChHHHHHHHHHhCCCEEEE
Q psy6804 175 YTSL-FPCNECAKVIIQSGIKEVIY 198 (207)
Q Consensus 175 y~T~-ePC~~C~~ai~~agi~~vvy 198 (207)
-.-. +|=.-|......+||+-|+=
T Consensus 468 aSDAFFPF~D~ve~aa~aGv~aIiQ 492 (523)
T 3zzm_A 468 ASDAFFPFPDGLETLAAAGVTAVVH 492 (523)
T ss_dssp EESSCCSSHHHHHHHHHTTCCEEEE
T ss_pred EeccCcCCCccHHHHHHcCCEEEEC
Confidence 7764 59999999999999998874
No 59
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=76.61 E-value=25 Score=31.47 Aligned_cols=81 Identities=20% Similarity=0.273 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC--CCCCCC
Q psy6804 94 YFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN--SADTKR 171 (207)
Q Consensus 94 ~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~--~~~~~~ 171 (207)
.=|..|....+.-+.. |+++-+||..|+.|..+..+ +|+-..|+.++. +..++|
T Consensus 420 ~DL~FAw~v~K~vKSN-----AIv~akdg~tvGiGaGQ~sR-------------------V~s~r~A~~kA~~~g~~~~G 475 (534)
T 4ehi_A 420 KDLEIAMKIAAFTKSN-----NVVYVKNGAMVAIGMGMTSR-------------------IDAAKAAIAKAKEMGLDLQG 475 (534)
T ss_dssp HHHHHHHHHHHHSCSS-----CEEEEETTEEEEEECSSSCH-------------------HHHHHHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHHHhcCCc-----eEEEEeCCeEEEECCCCcch-------------------HHHHHHHHHHHHhhccCCCC
Confidence 3366777777754422 34555899999999998753 799999999883 346789
Q ss_pred cEEEEccc-ChHHHHHHHHHhCCCEEEE
Q psy6804 172 CKLYTSLF-PCNECAKVIIQSGIKEVIY 198 (207)
Q Consensus 172 ~~ly~T~e-PC~~C~~ai~~agi~~vvy 198 (207)
+.|-.-.+ |=.-|......+||+-|+=
T Consensus 476 ~vlASDAFFPF~D~ve~Aa~aGV~aIiQ 503 (534)
T 4ehi_A 476 CVLASEAFFPFRDSIDEASKVGVKAIVE 503 (534)
T ss_dssp CEEECSSCCCSTHHHHHHHHTTCCEEEE
T ss_pred eEEEeccccCCCccHHHHHHcCCEEEEC
Confidence 99877654 9899999999999998874
No 60
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=69.84 E-value=2.4 Score=31.30 Aligned_cols=15 Identities=27% Similarity=0.811 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHhC
Q psy6804 21 LFPCNECAKVIIQSG 35 (207)
Q Consensus 21 ~~PC~~Ca~~i~~~g 35 (207)
..||-+|.+.|.+.+
T Consensus 92 ~~PCG~CRQ~l~E~~ 106 (141)
T 2d30_A 92 VPPCGACRQVMVELC 106 (141)
T ss_dssp CCCCHHHHHHHHHHS
T ss_pred cCcCHHHHHHHHHhc
Confidence 689999999999986
No 61
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=59.16 E-value=63 Score=28.37 Aligned_cols=78 Identities=23% Similarity=0.331 Sum_probs=58.9
Q ss_pred HHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCCCCCCCcEEE
Q psy6804 96 MASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLY 175 (207)
Q Consensus 96 m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~ly 175 (207)
|..|+..++.-+.. |+++-+||..|+.|..+.. -+|+-..|+.+++ ...+|+.|-
T Consensus 355 L~FAwkv~K~vKSN-----AIv~akdg~tvGiGaGQ~s-------------------RV~s~riA~~kA~-~~~~G~vlA 409 (464)
T 1zcz_A 355 LEFAYRVVEGAKSN-----AVLIAKDGVTVGIGSGQPS-------------------RKRAAWIATVMAG-EKAKGAVAA 409 (464)
T ss_dssp HHHHHHHHHHSCSS-----CEEEEETTEEEEEECSCSS-------------------HHHHHHHHHHHHG-GGGTTCEEE
T ss_pred HHHHHHHHhhcccc-----eEEEEeCCeEEEECCCCCc-------------------hHHHHHHHHHHhh-cccCCeEEE
Confidence 55677777754421 3445489999999999874 3788889999883 333688876
Q ss_pred Ecc-cChHHHHHHHHHhCCCEEEE
Q psy6804 176 TSL-FPCNECAKVIIQSGIKEVIY 198 (207)
Q Consensus 176 ~T~-ePC~~C~~ai~~agi~~vvy 198 (207)
.-. +|=.-+......+||+-|+=
T Consensus 410 SDAFFPF~D~v~~aa~aGv~aIiQ 433 (464)
T 1zcz_A 410 SDAFFPFPDSLEILAQAGVKAVVA 433 (464)
T ss_dssp ESSCCSSHHHHHHHHHTTCCEEEE
T ss_pred ecccCCchhhHHHHHHhCCeEEEc
Confidence 654 59999999999999999874
No 62
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=52.43 E-value=8.9 Score=28.12 Aligned_cols=27 Identities=26% Similarity=0.680 Sum_probs=19.8
Q ss_pred cEEEEc------CCCcHHHHHHHHHhCCCEEEE
Q psy6804 15 CKLYTS------LFPCNECAKVIIQSGIKEVIY 41 (207)
Q Consensus 15 ~~lYvT------~~PC~~Ca~~i~~~gI~~vv~ 41 (207)
..|+|+ ..||-+|.+.|.+.+-..|++
T Consensus 78 ~aiav~~~~~~~~~PCG~CRQ~l~E~~~~~i~v 110 (138)
T 3r2n_A 78 VAVYCVDGNGDSLMPCGRCRQLLYEHGGPELKI 110 (138)
T ss_dssp EEEEEECTTSCBCCCCHHHHHHHHHHHCTTCEE
T ss_pred EEEEEEcCCCCcCCCCHHHHHHHHHhCCCCEEE
Confidence 356776 699999999999986223444
No 63
>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens}
Probab=46.68 E-value=47 Score=28.64 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=40.5
Q ss_pred CceEEEEEc-----CCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---------------------
Q psy6804 111 TRVGAVIVN-----EDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--------------------- 164 (207)
Q Consensus 111 ~~vGaviv~-----~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--------------------- 164 (207)
..+.++|.. .+.+||+.|.... |.. ....+..++-+.-.|||+.|.+..
T Consensus 52 tvLA~iV~~~~~~~~~~~vVslgTGtK---c~~--~~~~~~~G~vlhD~HAEVlARRaf~r~L~~ql~~~~~~~~~~~~s 126 (403)
T 1zy7_A 52 KVLAGVVMTTGTDVKDAKVISVSTGTK---CIN--GEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNKDDQKRS 126 (403)
T ss_dssp SCEEEEEEEESSCGGGCEEEEEEECCC---BCC--GGGCCTTSCSCSBCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHC
T ss_pred eEEEEEEEEccCCCCceEEEEEcCCCC---ccC--cccccCCCCeeeeCCHHHHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence 445555543 2458998886542 111 111123445555789999997721
Q ss_pred -------CCCCC-C--CcEEEEcccChHHHHH
Q psy6804 165 -------NSADT-K--RCKLYTSLFPCNECAK 186 (207)
Q Consensus 165 -------~~~~~-~--~~~ly~T~ePC~~C~~ 186 (207)
+...+ . ...||+|.-||.-+..
T Consensus 127 if~~~~~~~~~Lk~~v~lhlY~S~~PCGdAsi 158 (403)
T 1zy7_A 127 IFQKSERGGFRLKENVQFHLYISTSPCGDARI 158 (403)
T ss_dssp SEEECTTSSEEECTTEEEEEEESSCCTTHHHH
T ss_pred eEEECCCCCeEECCCcEEEEEeccCCCCCccc
Confidence 00111 1 2679999999987764
No 64
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=37.20 E-value=1.4e+02 Score=22.79 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=36.8
Q ss_pred EEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHH-HHHHccCCCCCCCcEEEEcccChHHHHHHHHH--
Q psy6804 114 GAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEM-NAILNKNSADTKRCKLYTSLFPCNECAKVIIQ-- 190 (207)
Q Consensus 114 Gaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~-~Ai~~~~~~~~~~~~ly~T~ePC~~C~~ai~~-- 190 (207)
...|+ ++|+|+....+..+.+ ++....|+|. ..........-...+||++ .-|+.|.++..+
T Consensus 127 ~t~li-~~G~i~~~~~~~~~~~-------------~~~~~~~~~~il~~l~~~~i~~~~i~ly~~-~~Cp~C~~a~~~L~ 191 (241)
T 1nm3_A 127 YSMLV-KNGVVEKMFIEPNEPG-------------DPFKVSDADTMLKYLAPQHQVQESISIFTK-PGCPFCAKAKQLLH 191 (241)
T ss_dssp EEEEE-ETTEEEEEEECCSCSS-------------CCCSSSSHHHHHHHHCTTSCCCCCEEEEEC-SSCHHHHHHHHHHH
T ss_pred EEEEE-ECCEEEEEEEeccCCC-------------ccceecCHHHHHHHhhhhccccceEEEEEC-CCChHHHHHHHHHH
Confidence 45777 8999998776543321 1111244443 2322321222234677765 689999986654
Q ss_pred -hCCCE
Q psy6804 191 -SGIKE 195 (207)
Q Consensus 191 -agi~~ 195 (207)
.||.=
T Consensus 192 ~~~i~~ 197 (241)
T 1nm3_A 192 DKGLSF 197 (241)
T ss_dssp HHTCCC
T ss_pred HcCCce
Confidence 46653
No 65
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=33.85 E-value=25 Score=24.78 Aligned_cols=38 Identities=18% Similarity=0.094 Sum_probs=22.1
Q ss_pred HHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceee
Q psy6804 28 AKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVH 65 (207)
Q Consensus 28 a~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~ 65 (207)
+.....+||++|||......+...-..-.+-+.++|++
T Consensus 74 A~ra~~~GI~~vvfDrgg~~yhGrV~Ala~~are~GL~ 111 (112)
T 3v2d_S 74 AEKALALGIKQVAFDRGPYKYHGRVKALAEGAREGGLE 111 (112)
T ss_dssp HHHHHTTTCCBCEEECTTSCSCSSTTHHHHHHHHTTCB
T ss_pred HHHHHHCCCCEEEEecCCCcccHHHHHHHHHHHHcCCC
Confidence 34455679999999765433322222334455666664
No 66
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=31.47 E-value=86 Score=22.57 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=36.4
Q ss_pred EEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeee
Q psy6804 16 KLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSE 69 (207)
Q Consensus 16 ~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~ 69 (207)
.||++..|-...+..+...|++-|+......... ...+..+.+++.|+.+...
T Consensus 21 ~l~~s~~p~~a~a~~La~~Ga~vvi~~r~~~e~~-~~~~~~~~~~~~G~~~~~i 73 (157)
T 3gxh_A 21 QLLSSGLPNEQQFSLLKQAGVDVVINLMPDSSKD-AHPDEGKLVTQAGMDYVYI 73 (157)
T ss_dssp TEEEEBCCCHHHHHHHHHTTCCEEEECSCTTSTT-SCTTHHHHHHHTTCEEEEC
T ss_pred ceeEcCCCCHHHHHHHHHcCCCEEEECCCccccc-ccccHHHHHHHcCCeEEEe
Confidence 4999999999999999999999888654432211 1111245666778877653
No 67
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=29.85 E-value=81 Score=22.17 Aligned_cols=49 Identities=14% Similarity=0.418 Sum_probs=36.2
Q ss_pred EEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeee
Q psy6804 17 LYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSE 69 (207)
Q Consensus 17 lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~ 69 (207)
||.+..|-..-...+.+.||+.||-........ ...+++++.|+.+...
T Consensus 15 l~~s~~~~~~d~~~L~~~gi~~Vi~l~~~~e~~----~~~~~~~~~gi~~~~i 63 (151)
T 1xri_A 15 IFRSGFPDSANFSFLQTLGLRSIIYLCPEPYPE----SNLQFLKSNGIRLFQF 63 (151)
T ss_dssp EEEESCCCHHHHHHHHHHTCSEEEECCSSCCCH----HHHHHHHHHTCEEEEC
T ss_pred eEECCCcCccCHHHHHHCCCCEEEECCCCCcCh----hHHHHHHhcCCeEEec
Confidence 999999998888888899999999876543221 1234566778887764
No 68
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=27.53 E-value=30 Score=24.49 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=21.2
Q ss_pred HHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceee
Q psy6804 28 AKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVH 65 (207)
Q Consensus 28 a~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~ 65 (207)
+......||++|||..........-..-.+-+.++|++
T Consensus 78 A~Ral~~GI~~vvfDrgg~~yhGrV~Ala~~are~Gl~ 115 (116)
T 3r8s_O 78 AERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQ 115 (116)
T ss_dssp HHHHHTTTCCCCEEECTTSCSSSHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCCEEEEecCCCcccHHHHHHHHHHHHhCCC
Confidence 44455679999999765443322222223345566654
No 69
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=24.18 E-value=54 Score=24.34 Aligned_cols=49 Identities=2% Similarity=0.020 Sum_probs=32.5
Q ss_pred CCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804 12 TKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS 68 (207)
Q Consensus 12 ~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~ 68 (207)
++|+.++-..== ..=|.+++..||++|+...- ...+.++|++.||.+.-
T Consensus 61 L~ga~vADKVVG-KAAA~Lmv~ggV~~VyA~VI-------Se~Al~lL~~~GI~v~Y 109 (151)
T 1vk9_A 61 LEGSLVIDKMVG-KAAASFLLKMKPDHIHAKVI-------SKPALKLMNEYGQSFSY 109 (151)
T ss_dssp CTTCEEEEEEEC-HHHHHHHHHHCCSEEEEEEE-------EHHHHHHHHHTTCCEEE
T ss_pred ccCCEehHHHHh-HHHHHHHHhcChheehhHHh-------hHHHHHHHHHcCCceee
Confidence 566655542100 11356778889999986543 23589999999999854
No 70
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=22.56 E-value=48 Score=23.60 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=16.4
Q ss_pred CCceEEEEEcCCCeEEEEeeeC
Q psy6804 110 VTRVGAVIVNEDNKIVGTGYNG 131 (207)
Q Consensus 110 ~~~vGaviv~~~g~ii~~g~N~ 131 (207)
..++|.+++|++|+|+ -||.
T Consensus 25 ~l~~Gii~lD~~g~I~--~~N~ 44 (125)
T 1nwz_A 25 GLAFGAIQLDGDGNIL--QYNA 44 (125)
T ss_dssp TCSSEEEEEETTCBEE--EECH
T ss_pred ccCceEEEECCCCEEE--EEHH
Confidence 6789999999999986 4554
No 71
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=21.17 E-value=44 Score=23.54 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceee
Q psy6804 27 CAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVH 65 (207)
Q Consensus 27 Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~ 65 (207)
.++.....||++|||...-..+...-..-.+-..+.|++
T Consensus 75 lA~Ral~~GI~~vvfDrgg~~yhgrV~Ala~~are~GL~ 113 (114)
T 2zjr_L 75 LAAAAAEKGIKQVVFDRGSYKYHGRVKALADAAREGGLD 113 (114)
T ss_dssp HHHHHHTTCCCCCEECCCSSCSCSHHHHHHHHHHHHC--
T ss_pred HHHHHHHCCCCEEEEecCCccccHHHHHHHHHHHHhCCc
Confidence 444445789999999665333322222223334455554
No 72
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=21.14 E-value=53 Score=23.57 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=16.5
Q ss_pred CCceEEEEEcCCCeEEEEeeeC
Q psy6804 110 VTRVGAVIVNEDNKIVGTGYNG 131 (207)
Q Consensus 110 ~~~vGaviv~~~g~ii~~g~N~ 131 (207)
..++|.+++|++|+|+ -||.
T Consensus 30 ~l~~GiivlD~dg~I~--~~N~ 49 (129)
T 1mzu_A 30 ALPVGAIQVDGSGVIH--RYNR 49 (129)
T ss_dssp GCSSEEEEEETTCBEE--EECH
T ss_pred ccCceEEEECCCCeEE--EEHH
Confidence 6789999999999986 4554
No 73
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=20.65 E-value=47 Score=16.42 Aligned_cols=15 Identities=13% Similarity=0.401 Sum_probs=11.7
Q ss_pred eEEEEEcCCCeEEEE
Q psy6804 113 VGAVIVNEDNKIVGT 127 (207)
Q Consensus 113 vGaviv~~~g~ii~~ 127 (207)
.-..|.|+||++|+.
T Consensus 5 ~ss~IYD~~g~~i~~ 19 (26)
T 2v2f_A 5 TSSKIYDNKNQLIAD 19 (26)
T ss_pred CCCEEEeCCCCEeee
Confidence 346789999998864
Done!