RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6804
(207 letters)
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4
[TaxId: 10665]}
Length = 193
Score = 76.9 bits (188), Expect = 2e-18
Identities = 40/151 (26%), Positives = 60/151 (39%), Gaps = 42/151 (27%)
Query: 92 HEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDEL 151
+ A+LV++ SK +VGAVI + +I+ TGYNG P G + +
Sbjct: 3 ASTVLQIAYLVSQESKCCSWKVGAVIEK-NGRIISTGYNGSPAGGVNCCDYAAEQGWLLN 61
Query: 152 D---------------------------------------MCHAEMNAILN--KNSADTK 170
HAE+NAIL +N + +
Sbjct: 62 KPKHAIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIE 121
Query: 171 RCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 201
+Y +L PC +CAK I QSGIK+++Y
Sbjct: 122 GATMYVTLSPCPDCAKAIAQSGIKKLVYCET 152
Score = 36.8 bits (84), Expect = 8e-04
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 1 MNAILN--KNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRM 58
+NAIL +N + + +Y +L PC +CAK I QSGIK+++Y K KP +
Sbjct: 107 LNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKP---GWDDI 163
Query: 59 FDAAKV 64
A +
Sbjct: 164 LRNAGI 169
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas
europaea [TaxId: 915]}
Length = 189
Score = 52.8 bits (126), Expect = 2e-09
Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 17/121 (14%)
Query: 88 VLEWHEYFMASAFLVAKRSKD----PVTRVGAVIV-NEDNKIVGTGYNGMPIGCSDDEFP 142
VL E M + + + P A + + ++ G N + G
Sbjct: 22 VLAAPEARMGYVLELVRANIAADGGPF---AAAVFERDSGLLIAAGTNRVVPGR------ 72
Query: 143 WDKNTHDELDMCHAEMNAILNKN--SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMC 200
H E+ + + + C+L TS PC C +I SG++ ++
Sbjct: 73 -CSAAHAEILALSLAQAKLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAA 131
Query: 201 D 201
Sbjct: 132 R 132
Score = 27.0 bits (59), Expect = 1.5
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 15 CKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHK 47
C+L TS PC C +I SG++ ++
Sbjct: 103 CELVTSAEPCVMCFGAVIWSGVRSLVCAARSDD 135
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 156
Score = 50.2 bits (119), Expect = 1e-08
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 19/117 (16%)
Query: 90 EWHEYFMASAFLVAKRSKD-PVTRVGAVIVN-EDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
+W + M A+ A +G ++N +D ++G G+N S
Sbjct: 7 KWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSA--------- 57
Query: 148 HDELDMCHAEMNAILNKNSADTKRCK---LYTSLFPCNECAKVIIQSGIKEVIYMCD 201
H E++ + N + K K LYT+L PC+ C II GI + +
Sbjct: 58 -----TLHGEISTLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGEN 109
Score = 27.5 bits (60), Expect = 0.76
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 14 RCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQ 48
LYT+L PC+ C II GI + + + +
Sbjct: 79 DTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFK 113
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex
aeolicus [TaxId: 63363]}
Length = 151
Score = 49.4 bits (117), Expect = 2e-08
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 92 HEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
EYF+ A AKR+ + VGA+IV E I +
Sbjct: 3 KEYFLKVALREAKRAFEKGEVPVGAIIVKEGE-----------IISKAHNSVEELKDPTA 51
Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMC 200
A A N+ + C+LY +L PC C+ ++ S I++VI+
Sbjct: 52 HAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSA 101
Score = 29.8 bits (66), Expect = 0.13
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 1 MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHK 47
A N+ + C+LY +L PC C+ ++ S I++VI+ K
Sbjct: 59 KEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKK 105
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase
CodA {Agrobacterium tumefaciens [TaxId: 358]}
Length = 130
Score = 48.3 bits (114), Expect = 3e-08
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 12/110 (10%)
Query: 92 HEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
+FM A + A+ + + +GAV+V + + + N
Sbjct: 3 RTHFMELALVEARSAGERDEVPIGAVLVLDGR-----------VIARSGNRTRELNDVTA 51
Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMC 200
A LY +L PC CA I + I+ + Y
Sbjct: 52 HAEIAVIRMACEALGQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGA 101
Score = 29.0 bits (64), Expect = 0.23
Identities = 12/47 (25%), Positives = 16/47 (34%)
Query: 1 MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHK 47
A LY +L PC CA I + I+ + Y K
Sbjct: 59 RMACEALGQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPK 105
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis
[TaxId: 1423]}
Length = 158
Score = 46.0 bits (108), Expect = 3e-07
Identities = 26/112 (23%), Positives = 33/112 (29%), Gaps = 13/112 (11%)
Query: 92 HEYFMASAFLVAKRSKDPVTR--VGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHD 149
HE F+ A +A + GAVIV + I N
Sbjct: 5 HETFLKRAVTLACEGVNAGIGGPFGAVIVKD-----------GAIIAEGQNNVTTSNDPT 53
Query: 150 ELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 201
A A + C LYTS PC C I + K V Y +
Sbjct: 54 AHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAE 105
Score = 30.6 bits (68), Expect = 0.064
Identities = 14/51 (27%), Positives = 17/51 (33%)
Query: 1 MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPA 51
A + C LYTS PC C I + K V Y + A
Sbjct: 62 RKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEA 112
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA
{Escherichia coli [TaxId: 562]}
Length = 156
Score = 38.7 bits (89), Expect = 1e-04
Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 92 HEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
HEY+M A +AKR+ D VGAV+V+ + I +
Sbjct: 7 HEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGG 66
Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMC 200
L M + + LY +L PC CA +I S I V++
Sbjct: 67 LVMQNYRL-----------IDATLYVTLEPCVMCAGAMIHSRIGRVVFGA 105
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD
{Bacillus subtilis [TaxId: 1423]}
Length = 145
Score = 36.8 bits (84), Expect = 4e-04
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 17/115 (14%)
Query: 92 HEYFMASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTH 148
EY+M A +AK+ + + VGAV+V + + + ++ H
Sbjct: 2 EEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAH 61
Query: 149 DELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQ 203
E + + + CA++II SGIK V
Sbjct: 62 AEGADIYVTLEPCSHYG--------------KTPPCAELIINSGIKRVFVAMRDP 102
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD
{Thermotoga maritima [TaxId: 2336]}
Length = 147
Score = 33.7 bits (76), Expect = 0.005
Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 20/98 (20%)
Query: 92 HEYFMASAFLVAKRSKD---PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTH 148
+E FM A +AK+ P VGAV+V + I +
Sbjct: 2 YETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPH------------ 49
Query: 149 DELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAK 186
K D + L +L PC+ K
Sbjct: 50 -----AERMAIESARKKGEDLRGATLIVTLEPCDHHGK 82
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA
{Staphylococcus aureus [TaxId: 1280]}
Length = 151
Score = 32.2 bits (72), Expect = 0.019
Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 12/111 (10%)
Query: 92 HEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
YFM A AK++ +GA+I + +
Sbjct: 4 DIYFMTLAIEEAKKAAQLGEVPIGAIITKD-----------DEVIARAHNLRETLQQPTA 52
Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 201
A A S + C LY +L PC CA I+ S I V+Y D
Sbjct: 53 HAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGAD 103
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 136
Score = 28.1 bits (62), Expect = 0.43
Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 9/120 (7%)
Query: 90 EWHEYFMASAFLVAKRSKDPVT--RVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
E + + S+ K + P + VGA ++ D +I ++
Sbjct: 3 EHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGC-------NIENACYPLGVC 55
Query: 148 HDELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMSYK 207
+ + A + + + PC C +V+ + G +YM ++
Sbjct: 56 AERTAIQKAISEGYKDFRAIAISSDLQEEFISPCGACRQVMREFGTDWAVYMTKPDGTFV 115
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus
terreus [TaxId: 33178]}
Length = 123
Score = 27.6 bits (61), Expect = 0.60
Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 25/104 (24%)
Query: 112 RVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKR 171
V + ++ D +I G + F AE+ + +A
Sbjct: 27 SVASAALSSDGRIF--------TGVNVYHFTGG---------PCAELVVLGTAAAAAAGN 69
Query: 172 CKLY--------TSLFPCNECAKVIIQSGIKEVIYMCDKQMSYK 207
L PC C +V++ + D
Sbjct: 70 LTCIVAIGNENRGILSPCGRCRQVLLDLHPGIKAIVKDSDGQPT 113
>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 119
Score = 26.8 bits (59), Expect = 1.1
Identities = 11/53 (20%), Positives = 19/53 (35%)
Query: 83 KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG 135
+ D L + + + + R A + +D K G Y G+P G
Sbjct: 49 SELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPAG 101
>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Narrow-leaved blue lupine (Lupinus
angustifolius) [TaxId: 3871]}
Length = 165
Score = 26.7 bits (58), Expect = 1.4
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 113 VGAVIVNEDNKIV------GTGYNGMPIGCSD-DEFPWD---KNTHDELDMCHAEMNA 160
VG ++N D KI MP G D E P + + +E + AE+ A
Sbjct: 17 VGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIA 74
>d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit
{Desulfomicrobium baculatum [TaxId: 899]}
Length = 278
Score = 26.9 bits (59), Expect = 1.7
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 109 PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
P T +N I N + IGC + +F D +
Sbjct: 235 PSTYADCAKRRWNNGINWCVENAVCIGCVEPDF-PDGKS 272
>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 26.3 bits (57), Expect = 1.8
Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 12/101 (11%)
Query: 26 ECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDKMNGVQNGSPHKRV 85
E ++++++ + ++ + D S + ++ + V
Sbjct: 26 EASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLITANV 85
Query: 86 DDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVG 126
+ L MA R+ +++ E+ KIVG
Sbjct: 86 NTPLGEVLRKMAE------------HRIKHILIEEEGKIVG 114
>d1z1za1 d.323.1.1 (A:2-130) Minor tail protein gpU {Bacteriophage
lambda [TaxId: 10710]}
Length = 129
Score = 25.9 bits (57), Expect = 2.2
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 129 YNGMPIGCSDDEFP-----WDKNTHDELDMCHAEMNAILN 163
++G P + +FP + ++ A L+
Sbjct: 23 FDGRPAVFDEADFPAVAVYLTGAEYTGEELDSDTWQAELH 62
>d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray
(Torpedo californica) [TaxId: 7787]}
Length = 532
Score = 25.8 bits (55), Expect = 4.0
Identities = 8/52 (15%), Positives = 11/52 (21%)
Query: 129 YNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLYTSLFP 180
G P E W T E + + C + P
Sbjct: 475 KTGNPNEPHSQESKWPLFTTKEQKFIDLNTEPMKVHQRLRVQMCVFWNQFLP 526
>d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 526
Score = 25.8 bits (55), Expect = 4.1
Identities = 9/52 (17%), Positives = 15/52 (28%)
Query: 129 YNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLYTSLFP 180
G P + W E + ++C+ +TS FP
Sbjct: 473 KYGNPQETQNQSTSWPVFKSTEQKYLTLNTESTRIMTKLRAQQCRFWTSFFP 524
>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus
thermophilus [TaxId: 274]}
Length = 126
Score = 25.0 bits (54), Expect = 4.2
Identities = 11/95 (11%), Positives = 28/95 (29%), Gaps = 8/95 (8%)
Query: 113 VGAVIVNEDNKIV----GTGYNGMPIG-CSDDEFPWD---KNTHDELDMCHAEMNAILNK 164
G V+ N +++ G+ P G E + + +E + + +
Sbjct: 5 AGGVVFNAKREVLLLRDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPT 64
Query: 165 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYM 199
+ K + F ++ G+ +
Sbjct: 65 RYVNPKGVEREVHWFLMRGEGAPRLEEGMTGAGWF 99
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.411
Gapped
Lambda K H
0.267 0.0617 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 774,673
Number of extensions: 35054
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 42
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)