Query psy6805
Match_columns 86
No_of_seqs 108 out of 1010
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 18:50:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 100.0 1E-31 2.2E-36 208.7 6.9 81 4-84 469-549 (821)
2 cd01383 MYSc_type_VIII Myosin 100.0 1.3E-31 2.9E-36 205.0 7.1 81 4-84 372-452 (677)
3 cd01387 MYSc_type_XV Myosin mo 100.0 1.7E-31 3.7E-36 204.4 7.3 81 4-84 368-448 (677)
4 cd01381 MYSc_type_VII Myosin m 100.0 2.3E-31 5E-36 203.6 7.6 81 4-84 369-449 (671)
5 cd01384 MYSc_type_XI Myosin mo 100.0 2.3E-31 5E-36 203.6 7.0 82 3-84 373-454 (674)
6 cd01382 MYSc_type_VI Myosin mo 100.0 2.2E-31 4.9E-36 204.8 6.8 81 4-84 404-484 (717)
7 cd01379 MYSc_type_III Myosin m 100.0 3.1E-31 6.7E-36 202.4 6.8 81 4-84 380-460 (653)
8 cd01385 MYSc_type_IX Myosin mo 100.0 3.5E-31 7.5E-36 203.1 6.9 81 4-84 383-464 (692)
9 cd01378 MYSc_type_I Myosin mot 100.0 6.6E-31 1.4E-35 201.1 7.0 80 4-83 373-453 (674)
10 COG5022 Myosin heavy chain [Cy 100.0 5.2E-31 1.1E-35 209.5 5.5 81 4-84 435-516 (1463)
11 cd01377 MYSc_type_II Myosin mo 100.0 1.5E-30 3.3E-35 199.6 7.3 81 4-84 381-462 (693)
12 cd01380 MYSc_type_V Myosin mot 100.0 2.5E-30 5.4E-35 198.4 6.9 80 4-84 375-454 (691)
13 smart00242 MYSc Myosin. Large 100.0 5.1E-30 1.1E-34 196.4 7.0 81 4-84 376-456 (677)
14 cd00124 MYSc Myosin motor doma 100.0 1.6E-29 3.5E-34 193.6 6.5 81 4-84 369-449 (679)
15 PF00063 Myosin_head: Myosin h 99.9 2.2E-28 4.7E-33 187.2 6.5 81 4-84 371-452 (689)
16 cd01386 MYSc_type_XVIII Myosin 99.9 2.9E-28 6.3E-33 188.6 6.5 81 4-84 380-481 (767)
17 KOG0164|consensus 99.9 1.1E-28 2.5E-33 187.6 4.2 83 3-85 381-463 (1001)
18 KOG0161|consensus 99.9 1.7E-26 3.7E-31 188.8 4.2 80 4-84 455-535 (1930)
19 KOG0163|consensus 99.9 6.9E-26 1.5E-30 173.5 5.8 81 4-84 458-538 (1259)
20 KOG0160|consensus 99.9 5.8E-24 1.3E-28 165.1 5.5 80 4-84 375-454 (862)
21 KOG0162|consensus 99.9 5.3E-24 1.2E-28 162.7 3.5 79 3-81 389-468 (1106)
22 KOG4229|consensus 99.8 7.4E-22 1.6E-26 156.1 4.5 82 3-84 433-514 (1062)
23 PF15216 TSLP: Thymic stromal 20.5 2.4E+02 0.0052 17.8 4.6 55 25-79 9-69 (124)
No 1
>PTZ00014 myosin-A; Provisional
Probab=99.97 E-value=1e-31 Score=208.68 Aligned_cols=81 Identities=33% Similarity=0.426 Sum_probs=79.6
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSV 83 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~P 83 (86)
.||||.|..|||||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||++|
T Consensus 469 I~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p 548 (821)
T PTZ00014 469 IFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAP 548 (821)
T ss_pred cccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy6805 84 L 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 549 ~ 549 (821)
T PTZ00014 549 G 549 (821)
T ss_pred C
Confidence 6
No 2
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.97 E-value=1.3e-31 Score=205.02 Aligned_cols=81 Identities=49% Similarity=0.837 Sum_probs=79.7
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSV 83 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~P 83 (86)
.||||.|..||||||||||||||||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||++|
T Consensus 372 I~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p 451 (677)
T cd01383 372 IYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFP 451 (677)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy6805 84 L 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 452 ~ 452 (677)
T cd01383 452 N 452 (677)
T ss_pred C
Confidence 7
No 3
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.97 E-value=1.7e-31 Score=204.43 Aligned_cols=81 Identities=49% Similarity=0.753 Sum_probs=79.7
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSV 83 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~P 83 (86)
.||||.|..||||||||||||||||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||++|
T Consensus 368 IfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p 447 (677)
T cd01387 368 IYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFP 447 (677)
T ss_pred cCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy6805 84 L 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 448 ~ 448 (677)
T cd01387 448 Q 448 (677)
T ss_pred C
Confidence 6
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.97 E-value=2.3e-31 Score=203.56 Aligned_cols=81 Identities=46% Similarity=0.748 Sum_probs=79.7
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSV 83 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~P 83 (86)
.||||.|..||||||||||||||||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.|||++|||||++|
T Consensus 369 IfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p 448 (671)
T cd01381 369 IFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFP 448 (671)
T ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy6805 84 L 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 449 ~ 449 (671)
T cd01381 449 K 449 (671)
T ss_pred C
Confidence 6
No 5
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.97 E-value=2.3e-31 Score=203.60 Aligned_cols=82 Identities=49% Similarity=0.727 Sum_probs=80.1
Q ss_pred hhccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhc
Q psy6805 3 KLKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANS 82 (86)
Q Consensus 3 ~~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~ 82 (86)
..||||.|..|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||++
T Consensus 373 DI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~ 452 (674)
T cd01384 373 DIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMF 452 (674)
T ss_pred ecccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy6805 83 VL 84 (86)
Q Consensus 83 P~ 84 (86)
|+
T Consensus 453 p~ 454 (674)
T cd01384 453 PK 454 (674)
T ss_pred CC
Confidence 96
No 6
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.97 E-value=2.2e-31 Score=204.76 Aligned_cols=81 Identities=38% Similarity=0.674 Sum_probs=79.7
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSV 83 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~P 83 (86)
.||||.|..||||||||||||||||++|++++|..++++|.+|||+|.+++|.||++|+|||+++|.|||++|||||++|
T Consensus 404 IfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p 483 (717)
T cd01382 404 IAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLP 483 (717)
T ss_pred ccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy6805 84 L 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 484 ~ 484 (717)
T cd01382 484 Q 484 (717)
T ss_pred C
Confidence 6
No 7
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.97 E-value=3.1e-31 Score=202.38 Aligned_cols=81 Identities=46% Similarity=0.734 Sum_probs=79.5
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSV 83 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~P 83 (86)
.||||.|..||||||||||||||||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||++|
T Consensus 380 I~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~ 459 (653)
T cd01379 380 IFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFP 459 (653)
T ss_pred ccccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy6805 84 L 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 460 ~ 460 (653)
T cd01379 460 Q 460 (653)
T ss_pred C
Confidence 6
No 8
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.97 E-value=3.5e-31 Score=203.11 Aligned_cols=81 Identities=56% Similarity=0.938 Sum_probs=79.5
Q ss_pred hccccccCC-CchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhc
Q psy6805 4 LKESVKETT-NVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANS 82 (86)
Q Consensus 4 ~~~f~~~~~-N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~ 82 (86)
.||||.|.. ||||||||||||||||++|++++|..++++|..|||.|..++|.||++|++||++||.|||++|||||++
T Consensus 383 I~GFE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~ 462 (692)
T cd01385 383 IFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNF 462 (692)
T ss_pred cCccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcC
Confidence 689999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy6805 83 VL 84 (86)
Q Consensus 83 P~ 84 (86)
|+
T Consensus 463 p~ 464 (692)
T cd01385 463 PH 464 (692)
T ss_pred CC
Confidence 96
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.97 E-value=6.6e-31 Score=201.14 Aligned_cols=80 Identities=41% Similarity=0.730 Sum_probs=78.9
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCcccccchhhhhc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQANS 82 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~-~p~Gll~lLDee~~~ 82 (86)
.||||.|..||||||||||||||||++|++++|..++++|.+|||.|..++|.||++|+|||++ +|.|||++|||||++
T Consensus 373 IfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~ 452 (674)
T cd01378 373 IYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCAT 452 (674)
T ss_pred cccccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcC
Confidence 6899999999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred c
Q psy6805 83 V 83 (86)
Q Consensus 83 P 83 (86)
|
T Consensus 453 p 453 (674)
T cd01378 453 P 453 (674)
T ss_pred C
Confidence 9
No 10
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.97 E-value=5.2e-31 Score=209.55 Aligned_cols=81 Identities=48% Similarity=0.833 Sum_probs=78.4
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCcccccchhhhhc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQANS 82 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~-~p~Gll~lLDee~~~ 82 (86)
.||||-|..|||||||||||||+||+.|++++|+.+|++|.+|||+|.+|+|.||++|+|||++ .|.|||++|||||..
T Consensus 435 IyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~ 514 (1463)
T COG5022 435 IYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVM 514 (1463)
T ss_pred ecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcC
Confidence 6899999999999999999999999999999999999999999999999999999999999997 478999999999999
Q ss_pred cc
Q psy6805 83 VL 84 (86)
Q Consensus 83 P~ 84 (86)
|.
T Consensus 515 p~ 516 (1463)
T COG5022 515 PH 516 (1463)
T ss_pred CC
Confidence 84
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.96 E-value=1.5e-30 Score=199.61 Aligned_cols=81 Identities=44% Similarity=0.753 Sum_probs=79.0
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhhhc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANS 82 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~-~dn~~~l~li~~~p~Gll~lLDee~~~ 82 (86)
.||||.|..|||||||||||||+||++|++++|+.++++|.+|||.|..++| .||++|++||+++|.|||++|||||++
T Consensus 381 IfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~ 460 (693)
T cd01377 381 IAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVF 460 (693)
T ss_pred cccccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcC
Confidence 6999999999999999999999999999999999999999999999999999 599999999999999999999999999
Q ss_pred cc
Q psy6805 83 VL 84 (86)
Q Consensus 83 P~ 84 (86)
|+
T Consensus 461 ~~ 462 (693)
T cd01377 461 PK 462 (693)
T ss_pred CC
Confidence 86
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.96 E-value=2.5e-30 Score=198.40 Aligned_cols=80 Identities=50% Similarity=0.815 Sum_probs=78.0
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSV 83 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~P 83 (86)
.||||.|..|||||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||++ |.|||++|||||++|
T Consensus 375 I~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p 453 (691)
T cd01380 375 IYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLP 453 (691)
T ss_pred cCcccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCC
Confidence 6999999999999999999999999999999999999999999999999999999999999997 699999999999998
Q ss_pred c
Q psy6805 84 L 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 454 ~ 454 (691)
T cd01380 454 K 454 (691)
T ss_pred C
Confidence 6
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.96 E-value=5.1e-30 Score=196.36 Aligned_cols=81 Identities=52% Similarity=0.878 Sum_probs=79.5
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSV 83 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~P 83 (86)
.||||.|..||||||||||||||||++|++++|..++++|.+|||.|+.++|.||++|++||+++|.||+++|||||++|
T Consensus 376 ifGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~ 455 (677)
T smart00242 376 IYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFP 455 (677)
T ss_pred cccccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q psy6805 84 L 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 456 ~ 456 (677)
T smart00242 456 K 456 (677)
T ss_pred C
Confidence 5
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.96 E-value=1.6e-29 Score=193.63 Aligned_cols=81 Identities=52% Similarity=0.841 Sum_probs=79.5
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSV 83 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~P 83 (86)
.||||.+..|||||||||||||+||++|++++|..++++|..|||.|..++|.||++|+|||+++|.||+++|||||++|
T Consensus 369 i~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~ 448 (679)
T cd00124 369 IFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFP 448 (679)
T ss_pred ccccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q psy6805 84 L 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 449 ~ 449 (679)
T cd00124 449 K 449 (679)
T ss_pred C
Confidence 5
No 15
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.95 E-value=2.2e-28 Score=187.21 Aligned_cols=81 Identities=52% Similarity=0.894 Sum_probs=73.5
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhhhc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANS 82 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~-~dn~~~l~li~~~p~Gll~lLDee~~~ 82 (86)
.||||.+..|+||||||||||||||++|++++|..++++|.+|||.|+.++| .||++|+|||+++|.|||++|||||++
T Consensus 371 i~GFE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~ 450 (689)
T PF00063_consen 371 IFGFENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLL 450 (689)
T ss_dssp EE-B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTS
T ss_pred ccccccccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhc
Confidence 5899999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred cc
Q psy6805 83 VL 84 (86)
Q Consensus 83 P~ 84 (86)
|+
T Consensus 451 ~~ 452 (689)
T PF00063_consen 451 PR 452 (689)
T ss_dssp TT
T ss_pred cc
Confidence 96
No 16
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.95 E-value=2.9e-28 Score=188.58 Aligned_cols=81 Identities=30% Similarity=0.436 Sum_probs=75.3
Q ss_pred hccccccCC------CchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCC-------
Q psy6805 4 LKESVKETT------NVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP------- 69 (86)
Q Consensus 4 ~~~f~~~~~------N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~-~dn~~~l~li~~~p------- 69 (86)
.||||.|.+ |||||||||||||+||++|++++|..++++|..|||+|+.+.+ .||++|+++|+++|
T Consensus 380 IfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~ 459 (767)
T cd01386 380 TPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPA 459 (767)
T ss_pred cccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccc
Confidence 689999974 8999999999999999999999999999999999999987655 79999999999865
Q ss_pred -------Ccccccchhhhhccc
Q psy6805 70 -------NGLLCVLDDQANSVL 84 (86)
Q Consensus 70 -------~Gll~lLDee~~~P~ 84 (86)
.|||++|||||++|+
T Consensus 460 ~~~~~~~~GIl~lLDEec~~p~ 481 (767)
T cd01386 460 GLRAEDARGLLWLLDEEALVPG 481 (767)
T ss_pred hhhccCCCchhhhhhHhhcCCC
Confidence 599999999999996
No 17
>KOG0164|consensus
Probab=99.95 E-value=1.1e-28 Score=187.57 Aligned_cols=83 Identities=40% Similarity=0.644 Sum_probs=80.7
Q ss_pred hhccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhc
Q psy6805 3 KLKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANS 82 (86)
Q Consensus 3 ~~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~ 82 (86)
++||||.|..|||||||||||||+||+.|++.+++.||+||.+|||.|.+++|.+|.-++||++.+..||++||||+|+.
T Consensus 381 diygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~ 460 (1001)
T KOG0164|consen 381 DIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLR 460 (1001)
T ss_pred EeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy6805 83 VLL 85 (86)
Q Consensus 83 P~~ 85 (86)
|..
T Consensus 461 ~G~ 463 (1001)
T KOG0164|consen 461 PGT 463 (1001)
T ss_pred CCc
Confidence 864
No 18
>KOG0161|consensus
Probab=99.93 E-value=1.7e-26 Score=188.82 Aligned_cols=80 Identities=45% Similarity=0.765 Sum_probs=77.3
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhhhc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANS 82 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~-~dn~~~l~li~~~p~Gll~lLDee~~~ 82 (86)
.-||+.|..|||+|+||||+||+||++|++++|..++++|.+|||.|.+|+| .|-++|++||++ |+||+|+|||||++
T Consensus 455 iaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~ 533 (1930)
T KOG0161|consen 455 IAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVV 533 (1930)
T ss_pred eccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhc
Confidence 3599999999999999999999999999999999999999999999999999 899999999996 78999999999999
Q ss_pred cc
Q psy6805 83 VL 84 (86)
Q Consensus 83 P~ 84 (86)
|+
T Consensus 534 Pk 535 (1930)
T KOG0161|consen 534 PK 535 (1930)
T ss_pred CC
Confidence 97
No 19
>KOG0163|consensus
Probab=99.92 E-value=6.9e-26 Score=173.52 Aligned_cols=81 Identities=43% Similarity=0.727 Sum_probs=79.1
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSV 83 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~P 83 (86)
.-|||-|.+|||||||||||||+||++|.+++++.+|+.|..||+.++.|.|.||++|++||+.|..|||.|||||+++|
T Consensus 458 iAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP 537 (1259)
T KOG0163|consen 458 IAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLP 537 (1259)
T ss_pred eccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCC
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy6805 84 L 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 538 ~ 538 (1259)
T KOG0163|consen 538 K 538 (1259)
T ss_pred C
Confidence 7
No 20
>KOG0160|consensus
Probab=99.89 E-value=5.8e-24 Score=165.10 Aligned_cols=80 Identities=53% Similarity=0.823 Sum_probs=78.4
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSV 83 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~P 83 (86)
.||||-|.+|+|+||||||+||+||+.|.+|+|+.++++|..|+|+|..+++.||++|+++|++ |.|++++|||+|++|
T Consensus 375 iYgFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp 453 (862)
T KOG0160|consen 375 IYGFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLP 453 (862)
T ss_pred cccccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCC
Confidence 6999999999999999999999999999999999999999999999999999999999999997 899999999999999
Q ss_pred c
Q psy6805 84 L 84 (86)
Q Consensus 84 ~ 84 (86)
.
T Consensus 454 ~ 454 (862)
T KOG0160|consen 454 K 454 (862)
T ss_pred C
Confidence 6
No 21
>KOG0162|consensus
Probab=99.89 E-value=5.3e-24 Score=162.71 Aligned_cols=79 Identities=38% Similarity=0.673 Sum_probs=75.8
Q ss_pred hhccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCcccccchhhhh
Q psy6805 3 KLKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAN 81 (86)
Q Consensus 3 ~~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~-~p~Gll~lLDee~~ 81 (86)
..||||-|..|||||+||||.||+||+.|++.+++.||++|.+|||.|.++.|.||.-++|||+. +|.|||++|||.|-
T Consensus 389 DIYGFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~A 468 (1106)
T KOG0162|consen 389 DIYGFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCA 468 (1106)
T ss_pred EeeeeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999997 58899999999985
No 22
>KOG4229|consensus
Probab=99.84 E-value=7.4e-22 Score=156.13 Aligned_cols=82 Identities=50% Similarity=0.837 Sum_probs=80.1
Q ss_pred hhccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhc
Q psy6805 3 KLKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANS 82 (86)
Q Consensus 3 ~~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~ 82 (86)
-.||||.+..|+|||+|||+|||++|.+|.+++|..++++|..|+|.|..+.|.||..|+++|..+|+||+.+||||+.|
T Consensus 433 diFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~f 512 (1062)
T KOG4229|consen 433 DIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRF 512 (1062)
T ss_pred hhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy6805 83 VL 84 (86)
Q Consensus 83 P~ 84 (86)
|+
T Consensus 513 P~ 514 (1062)
T KOG4229|consen 513 PK 514 (1062)
T ss_pred Cc
Confidence 96
No 23
>PF15216 TSLP: Thymic stromal lymphopoietin
Probab=20.50 E-value=2.4e+02 Score=17.84 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhh-cCCccccccc-CChHHHHHHHhc----CCCcccccchhh
Q psy6805 25 EHLQYYFNQHVFQYEQEEYNK-EGIRWRHIEF-SDNTLCLQLVEG----KPNGLLCVLDDQ 79 (86)
Q Consensus 25 E~l~~~~~~~~f~~~~~~y~~-Egi~~~~i~~-~dn~~~l~li~~----~p~Gll~lLDee 79 (86)
|+++.-|.+.+|..-.+.... -......+-+ .+.++|+..|+. +..|--|+.+|.
T Consensus 9 ~kI~k~Y~~~I~~~L~~ymngtkst~FN~~~~C~~r~~CLtkIe~~Tfnp~~gC~SLa~e~ 69 (124)
T PF15216_consen 9 EKIQKIYENIIFHDLLKYMNGTKSTEFNNTVYCEDRPDCLTKIERLTFNPTPGCPSLAKET 69 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccCccccCCchhHHHHHHHHhcCCCCCchhHHHHH
Confidence 567777777777643333221 2234454444 678889887775 446777776664
Done!