Query psy6805
Match_columns 86
No_of_seqs 108 out of 1010
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 18:50:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v26_A Myosin VI; calmodulin-b 100.0 7.3E-33 2.5E-37 213.4 6.9 81 4-84 453-533 (784)
2 1lkx_A Myosin IE heavy chain; 100.0 7.8E-33 2.7E-37 211.2 6.4 81 4-84 387-467 (697)
3 4anj_A Unconventional myosin-V 100.0 3.8E-32 1.3E-36 213.9 6.9 81 4-84 457-537 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 6.5E-32 2.2E-36 208.3 7.5 80 4-84 438-517 (795)
5 1w9i_A Myosin II heavy chain; 100.0 1E-31 3.5E-36 206.6 7.3 81 4-84 455-537 (770)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 1.1E-31 3.8E-36 206.7 6.6 80 4-84 462-542 (783)
7 1kk8_A Myosin heavy chain, str 100.0 1.9E-31 6.5E-36 206.6 6.5 80 4-84 461-541 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 4.1E-31 1.4E-35 208.7 7.1 80 4-84 438-517 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 6.1E-31 2.1E-35 206.5 7.0 81 4-84 434-517 (995)
10 1g8x_A Myosin II heavy chain f 100.0 1.2E-30 4E-35 205.1 7.5 81 4-84 455-537 (1010)
11 1i84_S Smooth muscle myosin he 100.0 1.7E-30 5.9E-35 206.1 6.2 81 4-84 465-548 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 49.1 5.4 0.00019 20.8 0.7 26 57-82 25-50 (53)
13 1mof_A Moloney murine leukemia 44.4 6.5 0.00022 20.7 0.6 26 57-82 27-52 (55)
No 1
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.97 E-value=7.3e-33 Score=213.40 Aligned_cols=81 Identities=37% Similarity=0.650 Sum_probs=79.8
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSV 83 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~P 83 (86)
.||||.|..|||||||||||||+||++|++++|+.++++|.+|||+|..++|.||++|+|||+++|+|||+||||||++|
T Consensus 453 I~GFE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p 532 (784)
T 2v26_A 453 IAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLP 532 (784)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSS
T ss_pred cCCcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy6805 84 L 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 533 ~ 533 (784)
T 2v26_A 533 Q 533 (784)
T ss_dssp S
T ss_pred C
Confidence 7
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.97 E-value=7.8e-33 Score=211.19 Aligned_cols=81 Identities=40% Similarity=0.599 Sum_probs=79.7
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSV 83 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~P 83 (86)
.||||.|..|||||||||||||+||++|++++|+.++++|.+|||+|..++|.||++|+|||+++|+|||++|||||++|
T Consensus 387 I~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p 466 (697)
T 1lkx_A 387 IYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIA 466 (697)
T ss_dssp CCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHST
T ss_pred cccccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy6805 84 L 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 467 ~ 467 (697)
T 1lkx_A 467 K 467 (697)
T ss_dssp T
T ss_pred C
Confidence 7
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.97 E-value=3.8e-32 Score=213.94 Aligned_cols=81 Identities=37% Similarity=0.650 Sum_probs=79.8
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSV 83 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~P 83 (86)
.||||.|..|||||||||||||+||++|++++|+.++++|.+|||+|..++|.||++|+|||+++|+|||++|||||++|
T Consensus 457 I~GFE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p 536 (1052)
T 4anj_A 457 IAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLP 536 (1052)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSS
T ss_pred cCCCcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy6805 84 L 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 537 ~ 537 (1052)
T 4anj_A 537 Q 537 (1052)
T ss_dssp S
T ss_pred C
Confidence 7
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.97 E-value=6.5e-32 Score=208.33 Aligned_cols=80 Identities=49% Similarity=0.761 Sum_probs=78.3
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSV 83 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~P 83 (86)
.||||.|+.|||||||||||||+||++|++++|+.||++|.+|||+|..++|.||++|+|||+++ +|||+||||||++|
T Consensus 438 I~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p 516 (795)
T 1w7j_A 438 IYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMP 516 (795)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTST
T ss_pred cCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999986 99999999999999
Q ss_pred c
Q psy6805 84 L 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 517 ~ 517 (795)
T 1w7j_A 517 K 517 (795)
T ss_dssp T
T ss_pred C
Confidence 6
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.97 E-value=1e-31 Score=206.60 Aligned_cols=81 Identities=46% Similarity=0.788 Sum_probs=78.5
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcC-CCcccccchhhhh
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVLDDQAN 81 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~-~dn~~~l~li~~~-p~Gll~lLDee~~ 81 (86)
.||||.|..|||||||||||||+||++|++++|+.|+++|.+|||.|..++| .||++|+|||+++ |+|||++|||||+
T Consensus 455 I~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~ 534 (770)
T 1w9i_A 455 IYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSV 534 (770)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHS
T ss_pred CccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhC
Confidence 6899999999999999999999999999999999999999999999999999 5999999999984 9999999999999
Q ss_pred ccc
Q psy6805 82 SVL 84 (86)
Q Consensus 82 ~P~ 84 (86)
+|+
T Consensus 535 ~p~ 537 (770)
T 1w9i_A 535 FPN 537 (770)
T ss_dssp SSS
T ss_pred CCC
Confidence 997
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.97 E-value=1.1e-31 Score=206.71 Aligned_cols=80 Identities=44% Similarity=0.799 Sum_probs=76.7
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhhhc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANS 82 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~-~dn~~~l~li~~~p~Gll~lLDee~~~ 82 (86)
.||||.|..|||||||||||||+||++|++++|+.+|++|.+|||+|..++| .||++|+|||++ |+|||++|||||++
T Consensus 462 I~GFE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~ 540 (783)
T 4db1_A 462 IAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMF 540 (783)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTC
T ss_pred cccccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcC
Confidence 5899999999999999999999999999999999999999999999999999 599999999996 89999999999999
Q ss_pred cc
Q psy6805 83 VL 84 (86)
Q Consensus 83 P~ 84 (86)
|+
T Consensus 541 p~ 542 (783)
T 4db1_A 541 PK 542 (783)
T ss_dssp TT
T ss_pred CC
Confidence 96
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.97 E-value=1.9e-31 Score=206.59 Aligned_cols=80 Identities=46% Similarity=0.829 Sum_probs=77.9
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCcccccchhhhhc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANS 82 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~-~dn~~~l~li~~~p~Gll~lLDee~~~ 82 (86)
.||||.|+.|||||||||||||+||++|++++|+.|+++|.+|||+|..++| .||++|+|||++ |+|||++|||||++
T Consensus 461 I~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~ 539 (837)
T 1kk8_A 461 IAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMF 539 (837)
T ss_dssp CCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTC
T ss_pred cCCccccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999999999999999 599999999997 89999999999999
Q ss_pred cc
Q psy6805 83 VL 84 (86)
Q Consensus 83 P~ 84 (86)
|+
T Consensus 540 p~ 541 (837)
T 1kk8_A 540 PK 541 (837)
T ss_dssp TT
T ss_pred CC
Confidence 96
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.97 E-value=4.1e-31 Score=208.69 Aligned_cols=80 Identities=49% Similarity=0.761 Sum_probs=78.2
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCcccccchhhhhcc
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSV 83 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~~dn~~~l~li~~~p~Gll~lLDee~~~P 83 (86)
.||||.|..|||||||||||||+||++|++++|+.++++|..|||+|..++|.||++|+|||+++ +|||+||||||++|
T Consensus 438 I~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p 516 (1080)
T 2dfs_A 438 IYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMP 516 (1080)
T ss_dssp ECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTST
T ss_pred cCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999986 99999999999999
Q ss_pred c
Q psy6805 84 L 84 (86)
Q Consensus 84 ~ 84 (86)
+
T Consensus 517 ~ 517 (1080)
T 2dfs_A 517 K 517 (1080)
T ss_dssp T
T ss_pred C
Confidence 6
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.97 E-value=6.1e-31 Score=206.52 Aligned_cols=81 Identities=44% Similarity=0.755 Sum_probs=78.5
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhc--CCCcccccchhhh
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQA 80 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~-~dn~~~l~li~~--~p~Gll~lLDee~ 80 (86)
.||||.|..|||||||||||||+||++|++++|+.++++|.+|||+|..++| .||++|+|||++ +|+|||++|||||
T Consensus 434 I~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~ 513 (995)
T 2ycu_A 434 IAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEEC 513 (995)
T ss_dssp CCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSS
T ss_pred cccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHh
Confidence 6899999999999999999999999999999999999999999999999999 699999999998 4899999999999
Q ss_pred hccc
Q psy6805 81 NSVL 84 (86)
Q Consensus 81 ~~P~ 84 (86)
++|+
T Consensus 514 ~~p~ 517 (995)
T 2ycu_A 514 WFPK 517 (995)
T ss_dssp SSTT
T ss_pred cCCC
Confidence 9996
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.96 E-value=1.2e-30 Score=205.12 Aligned_cols=81 Identities=46% Similarity=0.788 Sum_probs=78.6
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhc-CCCcccccchhhhh
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQAN 81 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~-~dn~~~l~li~~-~p~Gll~lLDee~~ 81 (86)
.||||.|..|||||||||||||+||++|++++|+.++++|.+|||.|..++| .||++|+|||++ +|+|||++|||||+
T Consensus 455 I~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~ 534 (1010)
T 1g8x_A 455 ISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSV 534 (1010)
T ss_dssp CCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTT
T ss_pred CcccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhC
Confidence 6899999999999999999999999999999999999999999999999999 599999999998 49999999999999
Q ss_pred ccc
Q psy6805 82 SVL 84 (86)
Q Consensus 82 ~P~ 84 (86)
+|+
T Consensus 535 ~p~ 537 (1010)
T 1g8x_A 535 FPN 537 (1010)
T ss_dssp SSS
T ss_pred CCC
Confidence 997
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.96 E-value=1.7e-30 Score=206.12 Aligned_cols=81 Identities=44% Similarity=0.757 Sum_probs=77.2
Q ss_pred hccccccCCCchhhhHhhhhhhHHHHHHHHHHHHHHHHHhhhcCCccccccc-CChHHHHHHHhcC--CCcccccchhhh
Q psy6805 4 LKESVKETTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCVLDDQA 80 (86)
Q Consensus 4 ~~~f~~~~~N~feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~i~~-~dn~~~l~li~~~--p~Gll~lLDee~ 80 (86)
.||||.|..|||||||||||||+||++|++++|..++++|..|||.|..++| .||++|+|||+++ |+|||++|||||
T Consensus 465 i~GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~ 544 (1184)
T 1i84_S 465 IAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEEC 544 (1184)
T ss_dssp CCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTT
T ss_pred cCCcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhh
Confidence 6999999999999999999999999999999999999999999999999999 6999999999973 349999999999
Q ss_pred hccc
Q psy6805 81 NSVL 84 (86)
Q Consensus 81 ~~P~ 84 (86)
++|+
T Consensus 545 ~~p~ 548 (1184)
T 1i84_S 545 WFPK 548 (1184)
T ss_dssp SCTT
T ss_pred CCCC
Confidence 9996
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=49.05 E-value=5.4 Score=20.83 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.5
Q ss_pred ChHHHHHHHhcCCCcccccchhhhhc
Q psy6805 57 DNTLCLQLVEGKPNGLLCVLDDQANS 82 (86)
Q Consensus 57 dn~~~l~li~~~p~Gll~lLDee~~~ 82 (86)
.|.-.+|++..+..|+=..|.|+|.|
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC~ 50 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCCF 50 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchhc
Confidence 57788999988888999999999976
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=44.42 E-value=6.5 Score=20.69 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.5
Q ss_pred ChHHHHHHHhcCCCcccccchhhhhc
Q psy6805 57 DNTLCLQLVEGKPNGLLCVLDDQANS 82 (86)
Q Consensus 57 dn~~~l~li~~~p~Gll~lLDee~~~ 82 (86)
.|.-.+|++..+..|+=..|.|+|.|
T Consensus 27 QNRraLD~L~a~~GG~C~~l~e~CCf 52 (55)
T 1mof_A 27 QNRRGLDLLFLKEGGLCAALKEECAF 52 (55)
T ss_dssp HHHHHHHHHTGGGTCHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHHcCchhc
Confidence 57788999988888999999999976
Done!