RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6805
(86 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 73.2 bits (179), Expect = 2e-17
Identities = 32/69 (46%), Positives = 45/69 (65%)
Query: 11 TTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 70
N FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP
Sbjct: 386 QNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPI 445
Query: 71 GLLCVLDDQ 79
GL+ +LD+
Sbjct: 446 GLISLLDEA 454
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 68.2 bits (166), Expect = 9e-16
Identities = 34/69 (49%), Positives = 44/69 (63%)
Query: 11 TTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 70
N FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F + + KP
Sbjct: 420 DFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPM 479
Query: 71 GLLCVLDDQ 79
G+L +L+++
Sbjct: 480 GILSILEEE 488
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 67.4 bits (164), Expect = 1e-15
Identities = 32/69 (46%), Positives = 43/69 (62%)
Query: 11 TTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 70
N FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F + + KP
Sbjct: 422 DFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPM 481
Query: 71 GLLCVLDDQ 79
G+ +L+++
Sbjct: 482 GIFSILEEE 490
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 65.9 bits (160), Expect = 5e-15
Identities = 39/69 (56%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 11 TTNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 70
N FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E K
Sbjct: 383 EINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-M 441
Query: 71 GLLCVLDDQ 79
G+L +LD++
Sbjct: 442 GVLDLLDEE 450
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 64.8 bits (157), Expect = 1e-14
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 12 TNVFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--K 68
N FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E
Sbjct: 395 INSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTN 454
Query: 69 PNGLLCVLDDQAN 81
P G+L +LD++
Sbjct: 455 PPGVLALLDEECW 467
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 60.1 bits (145), Expect = 5e-13
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 15 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGL 72
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G +P G+
Sbjct: 419 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 478
Query: 73 LCVLDDQ 79
L +LD+Q
Sbjct: 479 LALLDEQ 485
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase
{Garden sage (Salvia officinalis) [TaxId: 38868]}
Length = 207
Score = 26.7 bits (59), Expect = 0.25
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 1 MEKLKESVK----ETTNVFEQLCINYANEHL--QYYFNQHVFQYEQEEYNKEGIRW-RHI 53
+L V+ E +QL + + ++L +F + + YN+ +
Sbjct: 23 KAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEV 82
Query: 54 EFSDNTLCLQ 63
E D
Sbjct: 83 EKMDLYFTAL 92
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 25.6 bits (56), Expect = 0.78
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 20 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 58
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA
synthetase, MetRS-CD {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 107
Score = 23.0 bits (49), Expect = 4.4
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 43 YNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANSVLLI 86
Y E + R++ N +L G+L DD LL+
Sbjct: 52 YKPEELLNRYVVVVANLEPKKLRGIGSQGMLLAADDGERVALLM 95
>d1lwuc1 d.171.1.1 (C:138-399) Fibrinogen C-terminal domains {Sea
lamprey (Petromyzon marinus), gamma [TaxId: 7757]}
Length = 262
Score = 22.9 bits (48), Expect = 7.4
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 21 NYANEHLQYYFNQHVFQYEQEEYNKEGIRWRH 52
+ + + +YYF + + + E +GI W
Sbjct: 201 HAGHLNGKYYFGGNYRKTDVEFPYDDGIIWAT 232
>d1e6yc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanosarcina barkeri [TaxId: 2208]}
Length = 247
Score = 22.8 bits (49), Expect = 8.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 45 KEGIRWRHIEFSD 57
G R R+I+F+D
Sbjct: 77 AAGDRVRYIQFAD 89
>d1hbnc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 247
Score = 22.4 bits (48), Expect = 8.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 45 KEGIRWRHIEFSD 57
K G R R+I+F+D
Sbjct: 76 KAGDRVRYIQFTD 88
>d1e6vc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 248
Score = 22.4 bits (48), Expect = 9.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 45 KEGIRWRHIEFSD 57
K G R R+I+F+D
Sbjct: 75 KAGDRIRYIQFTD 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 307,283
Number of extensions: 12319
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 18
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)