BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6806
(89 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EZZ|A Chain A, Solution Structure Of Human Barrier-To-Autointegration
Factor Baf Nmr, Ensemble Of 20 Simulated Annealing
Structures
pdb|2EZZ|B Chain B, Solution Structure Of Human Barrier-To-Autointegration
Factor Baf Nmr, Ensemble Of 20 Simulated Annealing
Structures
pdb|2EZX|A Chain A, Solution Structure Of Human Barrier-To-Autointegration
Factor Baf, Nmr, Regularized Mean Structure
pdb|2EZX|B Chain B, Solution Structure Of Human Barrier-To-Autointegration
Factor Baf, Nmr, Regularized Mean Structure
pdb|2EZY|A Chain A, Solution Structure Of Human Barrier-To-Autointegration
Factor Baf, Nmr, Ensemble Of 20 Simulated Annealing
Structures
pdb|2EZY|B Chain B, Solution Structure Of Human Barrier-To-Autointegration
Factor Baf, Nmr, Ensemble Of 20 Simulated Annealing
Structures
pdb|1QCK|A Chain A, Solution Structure Of Human Barrier-to-autointegration
Factor Baf, Nmr, Regularized Mean Structure Plus 20
Individual Simulated Annealing Structures
pdb|1QCK|B Chain B, Solution Structure Of Human Barrier-to-autointegration
Factor Baf, Nmr, Regularized Mean Structure Plus 20
Individual Simulated Annealing Structures
pdb|2BZF|A Chain A, Structural Basis For Dna Bridging By Barrier-To-
Autointegration Factor (Baf)
pdb|2ODG|A Chain A, Complex Of Barrier-To-Autointegration Factor And
Lem-Domain Of Emerin
pdb|2ODG|B Chain B, Complex Of Barrier-To-Autointegration Factor And
Lem-Domain Of Emerin
Length = 89
Score = 141 bits (356), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 80/89 (89%)
Query: 1 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFV 60
M+TSQKH++FV+EPMGEKPV LAG+G+VLGK+LE +GFDKAYVVLGQFL+LK++E+LF
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 61 DWMKETCQANAKQSGDCYNCLKDWCGEFL 89
+W+K+TC ANAKQS DC+ CL++WC FL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>pdb|1CI4|A Chain A, The Crystal Structure Of Human
Barrier-To-Autointegration Factor (Baf)
pdb|1CI4|B Chain B, The Crystal Structure Of Human
Barrier-To-Autointegration Factor (Baf)
Length = 89
Score = 136 bits (343), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 78/88 (88%)
Query: 2 STSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVD 61
+TSQKH++FV+EP GEKPV LAG+G+VLGK+LE +GFDKAYVVLGQFL+LK++E+LF +
Sbjct: 2 TTSQKHRDFVAEPXGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFRE 61
Query: 62 WMKETCQANAKQSGDCYNCLKDWCGEFL 89
W+K+TC ANAKQS DC+ CL++WC FL
Sbjct: 62 WLKDTCGANAKQSRDCFGCLREWCDAFL 89
>pdb|2AD1|A Chain A, Human Sulfotransferase Sult1c2
pdb|2GWH|A Chain A, Human Sulfotranferase Sult1c2 In Complex With Pap And
Pentachlorophenol
pdb|2GWH|B Chain B, Human Sulfotranferase Sult1c2 In Complex With Pap And
Pentachlorophenol
Length = 298
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 13 EPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQN 55
E M + P E+ + + +GK+L+ K DK V F ++KQN
Sbjct: 197 EDMKKNPKHEIQKLAEFIGKKLDDKVLDK-IVHYTSFDVMKQN 238
>pdb|4F50|A Chain A, Y-family Dna Polymerase Chimera Dbh-dbh-dpo4
Length = 361
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 11 VSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQ 48
V + + E + E+ G+G VL +RL G K +L +
Sbjct: 172 VQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSK 209
>pdb|4F4Y|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dbh
pdb|4F4Y|B Chain B, Y-family Dna Polymerase Chimera Dbh-dpo4-dbh
Length = 362
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 11 VSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQ 48
V + + E + E+ G+G VL +RL G K +L +
Sbjct: 172 VQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSK 209
>pdb|4F4W|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1
pdb|4F4W|B Chain B, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1
pdb|4F4X|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #2
Length = 361
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 11 VSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQ 48
V + + E + E+ G+G VL +RL G K +L +
Sbjct: 172 VQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSK 209
>pdb|3BQ0|A Chain A, Pre-insertion Binary Complex Of Dbh Dna Polymerase
pdb|3BQ1|A Chain A, Insertion Ternary Complex Of Dbh Dna Polymerase
pdb|3BQ2|A Chain A, Post-Insertion Binary Complex Of Dbh Dna Polymerase
pdb|4HYK|A Chain A, Dbh Ternary Complex (substrates Partially Disordered)
Length = 354
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 11 VSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQ 48
V + + E + E+ G+G VL +RL G K +L +
Sbjct: 172 VQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSK 209
>pdb|1K1Q|A Chain A, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
pdb|1K1Q|B Chain B, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
pdb|1K1S|A Chain A, Crystal Structure Of Dinb From Sulfolobus Solfataricus
Length = 354
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 11 VSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQ 48
V + + E + E+ G+G VL +RL G K +L +
Sbjct: 172 VQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSK 209
>pdb|1IM4|A Chain A, Crystal Structure Of A Dinb Homolog (Dbh) Lesion Bypass
Dna Polymerase Catalytic Fragment From Sulfolobus
Solfataricus
Length = 221
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 15 MGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQ 48
+ E + E+ G+G VL +RL G K +L +
Sbjct: 181 LNELDIDEIPGIGSVLARRLNELGIQKLRDILSK 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,717,073
Number of Sequences: 62578
Number of extensions: 95453
Number of successful extensions: 357
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 15
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)