BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6806
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9R1T1|BAF_RAT Barrier-to-autointegration factor OS=Rattus norvegicus GN=Banf1
PE=1 SV=1
Length = 89
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 79/89 (88%)
Query: 1 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFV 60
M+TSQKH++FV+EPMGEKPV LAG+GD LGKRLE +GFDKAYVVLGQFL+LK++E+LF
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGDALGKRLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 61 DWMKETCQANAKQSGDCYNCLKDWCGEFL 89
+W+K+TC ANAKQS DC+ CL++WC FL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>sp|O54962|BAF_MOUSE Barrier-to-autointegration factor OS=Mus musculus GN=Banf1 PE=1
SV=1
Length = 89
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 79/89 (88%)
Query: 1 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFV 60
M+TSQKH++FV+EPMGEKPV LAG+GDVL KRLE +GFDKAYVVLGQFL+LK++E+LF
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLSKRLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 61 DWMKETCQANAKQSGDCYNCLKDWCGEFL 89
+W+K+TC ANAKQS DC+ CL++WC FL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>sp|Q6P026|BAF_DANRE Barrier-to-autointegration factor OS=Danio rerio GN=banf1 PE=1
SV=1
Length = 90
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 78/88 (88%)
Query: 2 STSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVD 61
STSQKH++FV+EPMGEK V LAG+G+VLGKRLE KGFDKAYVVLGQFL+L+++EELF +
Sbjct: 3 STSQKHKDFVAEPMGEKSVMALAGIGEVLGKRLEEKGFDKAYVVLGQFLVLRKDEELFRE 62
Query: 62 WMKETCQANAKQSGDCYNCLKDWCGEFL 89
W+K+TC AN KQ GDCY+CL++WC FL
Sbjct: 63 WLKDTCGANTKQQGDCYSCLREWCDSFL 90
>sp|Q5RBU9|BAF_PONAB Barrier-to-autointegration factor OS=Pongo abelii GN=BANF1 PE=3
SV=1
Length = 89
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 80/89 (89%)
Query: 1 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFV 60
M+TSQKH++FV+EPMGEKPV LAG+G+VLGK+LE +GFDKAYVVLGQFL+LK++E+LF
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 61 DWMKETCQANAKQSGDCYNCLKDWCGEFL 89
+W+K+TC ANAKQS DC+ CL++WC FL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>sp|O75531|BAF_HUMAN Barrier-to-autointegration factor OS=Homo sapiens GN=BANF1 PE=1
SV=1
Length = 89
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 80/89 (89%)
Query: 1 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFV 60
M+TSQKH++FV+EPMGEKPV LAG+G+VLGK+LE +GFDKAYVVLGQFL+LK++E+LF
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 61 DWMKETCQANAKQSGDCYNCLKDWCGEFL 89
+W+K+TC ANAKQS DC+ CL++WC FL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>sp|P61283|BAF_BOVIN Barrier-to-autointegration factor OS=Bos taurus GN=BANF1 PE=3
SV=1
Length = 89
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 80/89 (89%)
Query: 1 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFV 60
M+TSQKH++FV+EPMGEKPV LAG+G+VLGK+LE +GFDKAYVVLGQFL+LK++E+LF
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 61 DWMKETCQANAKQSGDCYNCLKDWCGEFL 89
+W+K+TC ANAKQS DC+ CL++WC FL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>sp|Q66KV4|BAFB_XENLA Barrier-to-autointegration factor B OS=Xenopus laevis GN=banf1-b
PE=3 SV=1
Length = 90
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 76/88 (86%)
Query: 2 STSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVD 61
STSQKH++FV+EPMGEK V LAG+GD LG+RLE KGFDKAYVVLGQFL+LK++EELF +
Sbjct: 3 STSQKHRDFVAEPMGEKSVQCLAGIGDTLGRRLEEKGFDKAYVVLGQFLVLKKDEELFKE 62
Query: 62 WMKETCQANAKQSGDCYNCLKDWCGEFL 89
W+K+ C ANAKQS DCY CLK+WC FL
Sbjct: 63 WLKDACSANAKQSRDCYGCLKEWCDAFL 90
>sp|Q9VLU0|BAF_DROME Barrier-to-autointegration factor OS=Drosophila melanogaster
GN=baf PE=3 SV=1
Length = 90
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 73/87 (83%)
Query: 3 TSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDW 62
TSQKH+NFV+EPMG K VTELAG+G+ LG RL+ GFD AY VLGQ+L+LK++EELF DW
Sbjct: 4 TSQKHRNFVAEPMGNKSVTELAGIGETLGGRLKDAGFDMAYTVLGQYLVLKKDEELFKDW 63
Query: 63 MKETCQANAKQSGDCYNCLKDWCGEFL 89
MKE C A++KQ+ DCYNCL DWC EFL
Sbjct: 64 MKEVCHASSKQASDCYNCLNDWCEEFL 90
>sp|Q6NTS2|BAFA_XENLA Barrier-to-autointegration factor A OS=Xenopus laevis GN=banf1-a
PE=1 SV=1
Length = 90
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%)
Query: 2 STSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVD 61
STSQKH++FV+EPMGEK V LAG+G+ LG RLE KGFDKAYVVLGQFL+LK++EELF +
Sbjct: 3 STSQKHRDFVAEPMGEKSVQCLAGIGEALGHRLEEKGFDKAYVVLGQFLVLKKDEELFKE 62
Query: 62 WMKETCQANAKQSGDCYNCLKDWCGEFL 89
W+K+ C ANAKQS DCY CLK+WC FL
Sbjct: 63 WLKDICSANAKQSRDCYGCLKEWCDAFL 90
>sp|Q5HZM3|BAFL_XENLA Barrier-to-autointegration factor-like protein OS=Xenopus laevis
GN=banf2 PE=3 SV=1
Length = 91
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/89 (60%), Positives = 78/89 (87%), Gaps = 1/89 (1%)
Query: 2 STSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQN-EELFV 60
+TSQKH++FVSEPMG+KP+T LAG+G+VLG +LE +GFDKAYV+LGQFL+L+++ ++LF
Sbjct: 3 NTSQKHRDFVSEPMGDKPITALAGIGEVLGGKLEEQGFDKAYVLLGQFLILRKDADDLFK 62
Query: 61 DWMKETCQANAKQSGDCYNCLKDWCGEFL 89
DW+K++C AN++Q+ C +CLK+WC FL
Sbjct: 63 DWLKDSCGANSRQADLCSSCLKEWCSSFL 91
>sp|A8XAC6|BAF1_CAEBR Barrier-to-autointegration factor 1 OS=Caenorhabditis briggsae
GN=baf-1 PE=3 SV=1
Length = 89
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 64/89 (71%)
Query: 1 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFV 60
MSTS KH+ FV EPMG+K VT +AG+G G +L GFDKAYV+ GQ+LLLK++E+LFV
Sbjct: 1 MSTSVKHREFVGEPMGDKEVTCIAGIGPTYGTKLTDAGFDKAYVLFGQYLLLKKDEDLFV 60
Query: 61 DWMKETCQANAKQSGDCYNCLKDWCGEFL 89
+W+KET A + +NCL +W +F+
Sbjct: 61 EWLKETAGVTANHAKSAFNCLNEWAEQFI 89
>sp|Q03565|BAF1_CAEEL Barrier-to-autointegration factor 1 OS=Caenorhabditis elegans
GN=baf-1 PE=1 SV=3
Length = 89
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 64/89 (71%)
Query: 1 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFV 60
MSTS KH+ FV EPMG+K VT +AG+G G +L GFDKAYV+ GQ+LLLK++E+LF+
Sbjct: 1 MSTSVKHREFVGEPMGDKEVTCIAGIGPTYGTKLTDAGFDKAYVLFGQYLLLKKDEDLFI 60
Query: 61 DWMKETCQANAKQSGDCYNCLKDWCGEFL 89
+W+KET A + +NCL +W +F+
Sbjct: 61 EWLKETAGVTANHAKTAFNCLNEWADQFM 89
>sp|Q32PE7|BAFL_BOVIN Barrier-to-autointegration factor-like protein OS=Bos taurus
GN=BANF2 PE=3 SV=1
Length = 90
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 55/86 (63%)
Query: 4 SQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWM 63
S + + F+SEP+GEK V + G+ L L +KGF+KAYV+LGQFLL+ + E F W+
Sbjct: 5 SPRLRAFLSEPIGEKDVAWVDGISHELAINLVTKGFNKAYVLLGQFLLMHKREAEFQKWL 64
Query: 64 KETCQANAKQSGDCYNCLKDWCGEFL 89
C A ++ +C NCLK+WC FL
Sbjct: 65 ICCCGATEFEARECSNCLKEWCSCFL 90
>sp|Q8BVR0|BAFL_MOUSE Barrier-to-autointegration factor-like protein OS=Mus musculus
GN=Banf2 PE=2 SV=1
Length = 90
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 53/86 (61%)
Query: 4 SQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWM 63
S + + F+SEP+GEK V + G+ L L +KGF+KAYV+LGQFLL+ +NE F W+
Sbjct: 5 SPRLRAFLSEPIGEKDVAWVDGISRELAINLVTKGFNKAYVLLGQFLLMHKNEAEFQRWI 64
Query: 64 KETCQANAKQSGDCYNCLKDWCGEFL 89
C A ++ CLK+WC FL
Sbjct: 65 ICCCGATECEARQSSTCLKEWCSCFL 90
>sp|Q9H503|BAFL_HUMAN Barrier-to-autointegration factor-like protein OS=Homo sapiens
GN=BANF2 PE=1 SV=1
Length = 90
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%)
Query: 2 STSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVD 61
+ S + + F+SEP+GEK V + G+ L L +KG +KAY++LGQFLL+ +NE F
Sbjct: 3 NMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLMHKNEAEFQR 62
Query: 62 WMKETCQANAKQSGDCYNCLKDWCGEFL 89
W+ A ++ +CLK+WC FL
Sbjct: 63 WLICCFGATECEAQQTSHCLKEWCACFL 90
>sp|Q01YD1|ENO_SOLUE Enolase OS=Solibacter usitatus (strain Ellin6076) GN=eno PE=3 SV=1
Length = 427
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 8 QNFVSEPMGEKPVTELAGVG----DVLGKRLESKGFDKAYVVLGQFL-LLKQNEELFVDW 62
Q F+ P G K +E +G L K L KG+ A G F +LK NEE
Sbjct: 163 QEFMVAPFGAKSFSEALRMGVEVFHTLKKVLSKKGYSTAVGDEGGFAPMLKSNEEAIESC 222
Query: 63 MKETCQANAKQSGDCYNCLKDWCGEFL 89
++ QA K + CL EF
Sbjct: 223 LEAITQAGFKPGENVGICLDPASSEFF 249
>sp|O74316|YOGB_SCHPO Uncharacterized protein C15D4.11c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC15D4.11c PE=4 SV=2
Length = 263
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 10 FVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETCQA 69
++E + K +EL V VL + L KG++KA L F++ + ++ +KET +
Sbjct: 39 ILTEQLALKLDSELGYVKQVLDETLPKKGYEKA---LHSFIIHEDPSLNYISALKETAKE 95
Query: 70 NAKQSGDCYNCLKDWC 85
+ + Y+ K +
Sbjct: 96 RIRVTVPVYSSRKSYV 111
>sp|Q84L32|RD23B_ARATH Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana
GN=RAD23-2 PE=2 SV=2
Length = 368
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 32 KRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKE 65
+RLE+ GFD+A +V+ FL +NEEL +++ E
Sbjct: 329 ERLEAMGFDRA-IVIEAFLSCDRNEELAANYLLE 361
>sp|Q84L33|RD23A_ARATH Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana
GN=RAD23-1 PE=2 SV=3
Length = 371
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 32 KRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKE 65
+RLE+ GFD+A +V+ FL +NEEL +++ E
Sbjct: 332 QRLEAMGFDRA-LVIEAFLACDRNEELAANYLLE 364
>sp|Q5UQ35|YR811_MIMIV Putative ariadne-like RING finger protein R811 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R811 PE=4 SV=1
Length = 990
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 63 MKETCQANAKQSGDCYNCLKDWCGE 87
+++ C QS CY+C+K W GE
Sbjct: 813 LRQICGRKVCQSVACYDCMKSWYGE 837
>sp|Q2S3P8|RL18_SALRD 50S ribosomal protein L18 OS=Salinibacter ruber (strain DSM 13855
/ M31) GN=rplR PE=3 SV=1
Length = 119
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 16 GEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQF 49
GE P E VG++L +R E G DKA G +
Sbjct: 66 GETPTEESRSVGELLAERAEDAGIDKAVFDRGGY 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,953,814
Number of Sequences: 539616
Number of extensions: 1232849
Number of successful extensions: 3213
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3195
Number of HSP's gapped (non-prelim): 22
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)