Query psy6806
Match_columns 89
No_of_seqs 103 out of 105
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 18:51:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ci4_A Protein (barrier-TO-aut 100.0 1.3E-61 4.4E-66 325.7 10.3 89 1-89 1-89 (89)
2 2i1q_A DNA repair and recombin 95.2 0.025 8.6E-07 41.3 4.6 33 15-48 1-33 (322)
3 3bqs_A Uncharacterized protein 95.0 0.024 8.3E-07 37.1 3.6 31 17-47 3-33 (93)
4 4dez_A POL IV 1, DNA polymeras 94.4 0.021 7.2E-07 43.2 2.7 30 17-46 177-206 (356)
5 1wcn_A Transcription elongatio 94.0 0.017 6E-07 35.7 1.2 29 19-47 8-36 (70)
6 1im4_A DBH; DNA polymerase PAL 93.9 0.024 8.1E-07 41.0 2.0 29 18-46 184-212 (221)
7 1jx4_A DNA polymerase IV (fami 93.6 0.037 1.3E-06 41.8 2.7 29 18-46 178-206 (352)
8 3bq0_A POL IV, DBH, DNA polyme 93.4 0.036 1.2E-06 41.9 2.2 30 18-47 179-208 (354)
9 3mab_A Uncharacterized protein 93.1 0.085 2.9E-06 34.5 3.5 29 19-47 5-33 (93)
10 1b22_A DNA repair protein RAD5 93.1 0.039 1.3E-06 37.2 1.9 31 15-45 20-52 (114)
11 2aq4_A DNA repair protein REV1 92.3 0.074 2.5E-06 41.6 2.7 32 16-47 239-272 (434)
12 1pzn_A RAD51, DNA repair and r 92.3 0.086 2.9E-06 39.9 2.9 30 17-46 34-63 (349)
13 3osn_A DNA polymerase IOTA; ho 92.0 0.094 3.2E-06 41.2 2.9 28 19-46 235-262 (420)
14 4f4y_A POL IV, DNA polymerase 91.8 0.056 1.9E-06 41.5 1.5 29 18-46 179-207 (362)
15 3gqc_A DNA repair protein REV1 91.4 0.11 3.7E-06 42.3 2.8 29 18-46 315-343 (504)
16 1t94_A Polymerase (DNA directe 90.9 0.13 4.4E-06 40.4 2.7 33 15-47 279-311 (459)
17 3pzp_A DNA polymerase kappa; D 90.5 0.14 4.9E-06 41.4 2.7 37 7-47 331-367 (517)
18 2z43_A DNA repair and recombin 88.3 0.091 3.1E-06 38.8 0.0 36 12-47 6-41 (324)
19 4ecq_A DNA polymerase ETA; tra 86.0 0.33 1.1E-05 38.1 2.1 29 18-46 253-282 (435)
20 3arc_U Photosystem II 12 kDa e 84.8 0.36 1.2E-05 31.6 1.5 28 18-45 26-54 (97)
21 2kz3_A Putative uncharacterize 84.4 0.99 3.4E-05 28.8 3.4 59 15-83 1-59 (83)
22 1kft_A UVRC, excinuclease ABC 83.5 0.32 1.1E-05 29.4 0.7 19 19-37 25-43 (78)
23 3mfi_A DNA polymerase ETA; DNA 83.2 0.57 1.9E-05 38.0 2.3 34 7-43 298-336 (520)
24 2duy_A Competence protein come 83.2 0.49 1.7E-05 28.3 1.5 19 19-37 28-46 (75)
25 3im1_A Protein SNU246, PRE-mRN 82.0 2.4 8.2E-05 31.6 5.2 58 16-83 155-212 (328)
26 1x2i_A HEF helicase/nuclease; 81.1 0.67 2.3E-05 26.9 1.5 18 20-37 16-33 (75)
27 2fmp_A DNA polymerase beta; nu 79.6 0.43 1.5E-05 36.6 0.4 43 5-47 83-127 (335)
28 1vq8_Y 50S ribosomal protein L 79.4 0.38 1.3E-05 35.9 0.0 27 19-45 16-42 (241)
29 1s5l_U Photosystem II 12 kDa e 79.1 0.94 3.2E-05 31.7 2.0 28 19-46 64-92 (134)
30 2kp7_A Crossover junction endo 76.8 0.54 1.8E-05 30.2 0.1 20 18-37 58-77 (87)
31 1gm5_A RECG; helicase, replica 76.0 1.2 4.2E-05 37.7 2.1 32 18-49 115-146 (780)
32 1zee_A Hypothetical protein SO 75.1 1.5 5E-05 35.5 2.3 31 19-49 35-81 (403)
33 1z00_A DNA excision repair pro 74.7 1.3 4.5E-05 27.1 1.6 50 20-80 21-70 (89)
34 2q0z_X Protein Pro2281; SEC63, 74.4 7 0.00024 29.3 5.8 57 16-82 159-215 (339)
35 2a1j_A DNA repair endonuclease 74.2 1.1 3.7E-05 26.7 1.0 17 20-36 6-22 (63)
36 2a1j_B DNA excision repair pro 73.6 1.4 4.9E-05 27.2 1.5 50 20-80 34-83 (91)
37 2bcq_A DNA polymerase lambda; 72.8 1.9 6.6E-05 33.0 2.4 26 21-46 99-124 (335)
38 1u9l_A Transcription elongatio 69.9 1.8 6.3E-05 26.6 1.4 38 21-58 9-51 (70)
39 2ihm_A POL MU, DNA polymerase 69.4 2.3 8E-05 32.9 2.2 29 18-46 102-130 (360)
40 4e9f_A Methyl-CPG-binding doma 69.1 3.6 0.00012 28.6 2.9 46 16-65 102-147 (161)
41 2edu_A Kinesin-like protein KI 69.0 1.7 5.9E-05 27.3 1.1 20 18-37 40-59 (98)
42 1z00_B DNA repair endonuclease 67.5 1.9 6.4E-05 27.3 1.1 17 20-36 20-36 (84)
43 2vh3_A Ranasmurfin, RSF-1; LTQ 65.2 4.8 0.00016 27.1 2.8 43 19-61 7-51 (113)
44 3vdp_A Recombination protein R 64.1 2.3 7.9E-05 31.7 1.2 17 19-35 27-43 (212)
45 2va8_A SSO2462, SKI2-type heli 63.2 3 0.0001 33.4 1.7 27 19-45 658-684 (715)
46 1jms_A Terminal deoxynucleotid 62.8 3.7 0.00013 32.1 2.2 30 17-46 120-149 (381)
47 2bcq_A DNA polymerase lambda; 62.6 2.7 9.1E-05 32.2 1.3 18 19-36 58-75 (335)
48 1pu6_A 3-methyladenine DNA gly 61.9 8.2 0.00028 27.5 3.7 48 18-65 121-176 (218)
49 2zj8_A DNA helicase, putative 61.4 4.5 0.00015 32.6 2.5 29 18-46 646-674 (720)
50 2ihm_A POL MU, DNA polymerase 60.4 3.8 0.00013 31.7 1.8 24 13-36 55-79 (360)
51 2fmp_A DNA polymerase beta; nu 60.0 3.1 0.00011 31.8 1.3 24 13-36 51-75 (335)
52 2i5h_A Hypothetical protein AF 60.0 4 0.00014 30.4 1.8 18 19-36 133-150 (205)
53 1v5w_A DMC1, meiotic recombina 58.8 2 6.9E-05 32.0 0.0 29 19-47 26-56 (343)
54 1jms_A Terminal deoxynucleotid 58.4 4.3 0.00015 31.7 1.9 24 13-36 74-98 (381)
55 1vdd_A Recombination protein R 58.0 3.4 0.00012 31.1 1.2 17 19-35 13-29 (228)
56 2w9m_A Polymerase X; SAXS, DNA 57.6 5.5 0.00019 32.3 2.4 31 16-46 95-125 (578)
57 3qe9_Y Exonuclease 1; exonucle 57.6 4.6 0.00016 31.1 1.8 37 15-51 222-262 (352)
58 1y6u_A XIS, excisionase from t 56.9 1.6 5.6E-05 26.7 -0.7 50 13-65 9-66 (70)
59 3c65_A Uvrabc system protein C 56.5 2.3 7.9E-05 31.5 0.0 31 7-37 162-192 (226)
60 4gfj_A Topoisomerase V; helix- 55.8 3.7 0.00013 34.8 1.1 21 16-36 466-486 (685)
61 2ztd_A Holliday junction ATP-d 55.3 3.8 0.00013 29.9 1.0 18 19-36 124-141 (212)
62 2p6r_A Afuhel308 helicase; pro 55.0 4.9 0.00017 32.3 1.6 28 19-46 633-660 (702)
63 3lda_A DNA repair protein RAD5 52.7 12 0.00041 29.0 3.5 31 16-46 79-111 (400)
64 1inz_A EPS15-interacting porte 52.5 9.9 0.00034 26.3 2.7 45 20-66 54-103 (148)
65 1ixr_A Holliday junction DNA h 52.1 5.8 0.0002 28.3 1.5 18 19-36 108-125 (191)
66 1orn_A Endonuclease III; DNA r 51.6 11 0.00038 27.0 2.9 24 18-41 113-136 (226)
67 1cuk_A RUVA protein; DNA repai 50.8 5 0.00017 28.9 1.0 18 19-36 109-126 (203)
68 1kea_A Possible G-T mismatches 50.6 6 0.0002 28.2 1.4 24 18-41 115-138 (221)
69 1j9i_A GPNU1 DBD;, terminase s 50.2 2.7 9.1E-05 24.5 -0.5 52 18-70 6-57 (68)
70 3ru6_A Orotidine 5'-phosphate 49.2 7.5 0.00026 29.8 1.8 57 11-69 185-252 (303)
71 3tr2_A Orotidine 5'-phosphate 48.5 19 0.00066 26.2 3.9 56 9-66 169-235 (239)
72 4dpz_X HRAS-like suppressor 2; 47.0 7.5 0.00026 26.7 1.4 23 42-64 96-121 (137)
73 1eyh_A Epsin; superhelix of he 46.3 8.3 0.00029 26.5 1.5 45 20-66 36-85 (144)
74 2bgw_A XPF endonuclease; hydro 45.7 7.6 0.00026 27.1 1.3 51 20-81 164-214 (219)
75 4dot_A Group XVI phospholipase 43.3 7.4 0.00025 26.9 0.9 34 41-76 95-132 (140)
76 3q8k_A Flap endonuclease 1; he 42.4 10 0.00035 28.9 1.7 22 15-36 229-250 (341)
77 2o35_A Hypothetical protein DU 42.0 7.8 0.00027 26.3 0.8 15 73-87 40-54 (105)
78 2nrt_A Uvrabc system protein C 42.0 10 0.00035 28.0 1.5 19 19-37 169-187 (220)
79 4f92_B U5 small nuclear ribonu 41.5 14 0.00047 34.1 2.5 29 18-46 1557-1585(1724)
80 1yqf_A Hypothetical protein LM 41.3 23 0.00078 25.2 3.2 37 29-66 161-198 (203)
81 3fyb_A Protein of unknown func 41.2 8.2 0.00028 26.1 0.8 14 73-86 39-52 (104)
82 1p32_A Mitochondrial matrix pr 41.0 22 0.00074 25.3 3.1 38 29-67 165-203 (209)
83 2h56_A DNA-3-methyladenine gly 40.5 11 0.00036 27.2 1.4 24 19-42 139-162 (233)
84 2jtq_A Phage shock protein E; 39.1 7 0.00024 22.8 0.2 22 27-49 54-75 (85)
85 2ekk_A UBA domain from E3 ubiq 39.0 42 0.0015 18.3 3.5 40 24-65 6-45 (47)
86 2abk_A Endonuclease III; DNA-r 38.4 6.5 0.00022 27.7 -0.1 23 18-40 109-131 (211)
87 3fhg_A Mjogg, N-glycosylase/DN 38.4 10 0.00035 26.7 1.0 21 19-39 118-139 (207)
88 4b21_A Probable DNA-3-methylad 38.4 13 0.00046 26.9 1.6 24 19-42 151-174 (232)
89 3fsp_A A/G-specific adenine gl 38.3 15 0.00052 27.7 2.0 24 18-41 118-141 (369)
90 2lkt_A Retinoic acid receptor 38.2 9.9 0.00034 24.5 0.8 24 41-64 95-121 (125)
91 1kg2_A A/G-specific adenine gl 38.1 7 0.00024 27.8 0.1 24 18-41 109-132 (225)
92 1vee_A Proline-rich protein fa 36.7 7.7 0.00026 24.8 0.1 26 24-49 83-109 (134)
93 2w9m_A Polymerase X; SAXS, DNA 36.0 19 0.00064 29.1 2.3 62 11-79 51-115 (578)
94 3s6i_A DNA-3-methyladenine gly 35.6 16 0.00054 26.3 1.6 24 19-42 140-163 (228)
95 3oig_A Enoyl-[acyl-carrier-pro 34.9 14 0.00047 25.4 1.2 17 24-40 19-35 (266)
96 4fs3_A Enoyl-[acyl-carrier-pro 34.7 14 0.00047 25.9 1.2 16 25-40 19-34 (256)
97 1a76_A Flap endonuclease-1 pro 33.4 23 0.00077 26.4 2.2 28 16-43 222-251 (326)
98 4e3z_A Putative oxidoreductase 33.1 16 0.00055 25.3 1.3 37 4-40 12-52 (272)
99 1whc_A RSGI RUH-027, UBA/UBX 3 33.0 58 0.002 19.1 3.7 43 25-67 7-49 (64)
100 1rxw_A Flap structure-specific 33.0 16 0.00055 27.4 1.4 33 15-47 232-266 (336)
101 3b0x_A DNA polymerase beta fam 32.8 22 0.00074 28.6 2.2 33 14-46 89-122 (575)
102 3hix_A ALR3790 protein; rhodan 32.8 13 0.00044 22.7 0.7 23 27-49 65-87 (106)
103 3guy_A Short-chain dehydrogena 32.6 14 0.00049 24.8 0.9 17 24-40 11-27 (230)
104 1b43_A Protein (FEN-1); nuclea 32.4 21 0.0007 26.8 1.9 23 15-37 233-256 (340)
105 3jv1_A P22 protein; MAM33 fami 32.0 54 0.0018 22.8 3.9 37 29-66 140-177 (182)
106 3ory_A Flap endonuclease 1; hy 31.6 18 0.00061 27.9 1.5 17 20-36 252-269 (363)
107 2yg9_A DNA-3-methyladenine gly 31.5 18 0.00063 25.8 1.4 23 19-41 147-169 (225)
108 3onk_A Epsin-3, ENT3; helix, p 31.4 25 0.00085 24.3 2.0 46 19-66 41-92 (150)
109 3asu_A Short-chain dehydrogena 31.2 20 0.00067 24.8 1.5 17 24-40 10-26 (248)
110 3l6e_A Oxidoreductase, short-c 30.9 14 0.00049 25.3 0.7 17 24-40 13-29 (235)
111 3m47_A Orotidine 5'-phosphate 30.8 20 0.00068 25.6 1.5 55 11-67 167-222 (228)
112 2izo_A FEN1, flap structure-sp 30.7 21 0.00071 27.0 1.7 23 15-37 230-253 (346)
113 1gmx_A GLPE protein; transfera 30.5 13 0.00043 22.6 0.4 23 27-49 71-93 (108)
114 1exn_A 5'-exonuclease, 5'-nucl 30.3 16 0.00056 27.6 1.0 27 19-45 204-232 (290)
115 2ysj_A Tripartite motif-contai 30.1 18 0.00061 19.9 0.9 11 76-86 42-52 (63)
116 1mpg_A ALKA, 3-methyladenine D 29.8 16 0.00056 26.7 0.9 25 18-42 207-231 (282)
117 2ea6_A Ring finger protein 4; 29.8 17 0.00059 19.9 0.8 13 75-87 43-55 (69)
118 3nrc_A Enoyl-[acyl-carrier-pro 29.4 19 0.00065 25.2 1.2 17 24-40 38-54 (280)
119 1zmo_A Halohydrin dehalogenase 29.4 22 0.00076 24.2 1.5 17 24-40 11-27 (244)
120 2fsx_A RV0390, COG0607: rhodan 29.4 14 0.00047 23.9 0.4 23 27-49 93-115 (148)
121 3l77_A Short-chain alcohol deh 29.3 16 0.00054 24.5 0.7 17 24-40 12-28 (235)
122 3qiv_A Short-chain dehydrogena 29.2 16 0.00055 24.8 0.7 17 24-40 19-35 (253)
123 3o38_A Short chain dehydrogena 29.2 20 0.00067 24.6 1.2 21 20-40 27-49 (266)
124 3i1j_A Oxidoreductase, short c 29.0 16 0.00055 24.6 0.7 17 24-40 24-40 (247)
125 1zmt_A Haloalcohol dehalogenas 28.9 23 0.00078 24.3 1.5 17 24-40 11-27 (254)
126 3i4f_A 3-oxoacyl-[acyl-carrier 28.9 16 0.00056 24.9 0.7 17 24-40 17-33 (264)
127 3h7a_A Short chain dehydrogena 28.7 16 0.00056 25.2 0.7 17 24-40 17-33 (252)
128 3edm_A Short chain dehydrogena 28.6 16 0.00056 25.3 0.7 17 24-40 18-34 (259)
129 3lt0_A Enoyl-ACP reductase; tr 28.5 21 0.00072 25.8 1.3 18 25-42 15-32 (329)
130 3ng2_A RNF4, snurf, ring finge 28.3 19 0.00065 20.0 0.8 13 75-87 38-50 (71)
131 1d7o_A Enoyl-[acyl-carrier pro 28.1 21 0.00072 25.0 1.2 17 24-40 20-36 (297)
132 2nwq_A Probable short-chain de 28.0 24 0.00083 24.8 1.5 17 24-40 31-47 (272)
133 2djb_A Polycomb group ring fin 27.9 21 0.00071 20.3 1.0 13 75-87 37-49 (72)
134 3i0w_A 8-oxoguanine-DNA-glycos 27.9 19 0.00066 26.7 1.0 24 18-41 211-234 (290)
135 3rjv_A Putative SEL1 repeat pr 27.7 82 0.0028 20.4 4.1 38 32-69 10-47 (212)
136 3f1l_A Uncharacterized oxidore 27.7 17 0.0006 24.9 0.7 17 24-40 22-38 (252)
137 3ek2_A Enoyl-(acyl-carrier-pro 27.5 22 0.00076 24.1 1.2 17 24-40 26-42 (271)
138 3c1y_A DNA integrity scanning 27.5 12 0.00041 29.8 -0.2 25 13-37 310-334 (377)
139 1ul1_X Flap endonuclease-1; pr 27.5 19 0.00064 27.7 0.9 22 15-36 229-250 (379)
140 2xeu_A Ring finger protein 4; 27.5 20 0.00069 19.3 0.8 13 75-87 31-43 (64)
141 3b0x_A DNA polymerase beta fam 27.4 25 0.00085 28.3 1.7 17 19-35 129-145 (575)
142 3o26_A Salutaridine reductase; 27.2 18 0.00062 24.8 0.7 16 24-39 22-37 (311)
143 3op4_A 3-oxoacyl-[acyl-carrier 26.9 18 0.00063 24.8 0.7 17 24-40 19-35 (248)
144 3ged_A Short-chain dehydrogena 26.8 18 0.00063 26.1 0.7 17 24-40 12-28 (247)
145 3osu_A 3-oxoacyl-[acyl-carrier 26.7 19 0.00064 24.6 0.7 17 24-40 14-30 (246)
146 3p19_A BFPVVD8, putative blue 26.7 20 0.0007 25.1 0.9 17 24-40 26-42 (266)
147 3grk_A Enoyl-(acyl-carrier-pro 26.7 23 0.00078 25.2 1.2 17 24-40 43-59 (293)
148 4iiu_A 3-oxoacyl-[acyl-carrier 26.7 19 0.00064 24.9 0.7 17 24-40 36-52 (267)
149 3ucx_A Short chain dehydrogena 26.6 23 0.00078 24.5 1.2 17 24-40 21-37 (264)
150 1qsg_A Enoyl-[acyl-carrier-pro 26.6 23 0.0008 24.3 1.2 17 24-40 21-37 (265)
151 1sby_A Alcohol dehydrogenase; 26.4 21 0.00073 24.2 1.0 17 24-40 15-31 (254)
152 4h15_A Short chain alcohol deh 26.4 19 0.00064 25.9 0.7 17 24-40 21-37 (261)
153 3oid_A Enoyl-[acyl-carrier-pro 26.4 19 0.00065 25.0 0.7 17 24-40 14-30 (258)
154 3ve9_A Orotidine-5'-phosphate 26.3 30 0.001 24.8 1.8 54 10-66 144-199 (215)
155 3tpc_A Short chain alcohol deh 26.3 19 0.00066 24.7 0.7 17 24-40 17-33 (257)
156 1fjh_A 3alpha-hydroxysteroid d 26.3 19 0.00066 24.3 0.7 17 24-40 11-27 (257)
157 3dii_A Short-chain dehydrogena 26.3 19 0.00066 24.6 0.7 17 24-40 12-28 (247)
158 1qxn_A SUD, sulfide dehydrogen 26.2 13 0.00045 23.9 -0.1 23 27-49 95-117 (137)
159 3sx2_A Putative 3-ketoacyl-(ac 26.1 19 0.00067 24.9 0.7 17 24-40 23-39 (278)
160 3icc_A Putative 3-oxoacyl-(acy 26.1 20 0.00067 24.2 0.7 17 24-40 17-33 (255)
161 3pxx_A Carveol dehydrogenase; 26.1 20 0.00067 24.8 0.7 17 24-40 20-36 (287)
162 3orf_A Dihydropteridine reduct 26.1 20 0.00067 24.7 0.7 17 24-40 32-48 (251)
163 4iin_A 3-ketoacyl-acyl carrier 25.9 20 0.00067 24.9 0.7 17 24-40 39-55 (271)
164 3lyl_A 3-oxoacyl-(acyl-carrier 25.9 20 0.00068 24.2 0.7 17 24-40 15-31 (247)
165 3lrq_A E3 ubiquitin-protein li 25.8 22 0.00074 21.8 0.8 13 75-87 44-56 (100)
166 3imf_A Short chain dehydrogena 25.8 20 0.00068 24.7 0.7 17 24-40 16-32 (257)
167 3f9i_A 3-oxoacyl-[acyl-carrier 25.8 20 0.00068 24.2 0.7 17 24-40 24-40 (249)
168 3d1p_A Putative thiosulfate su 25.8 19 0.00064 22.8 0.5 22 28-49 105-126 (139)
169 3v2g_A 3-oxoacyl-[acyl-carrier 25.7 20 0.00068 25.2 0.7 17 24-40 41-57 (271)
170 3tfo_A Putative 3-oxoacyl-(acy 25.7 20 0.00068 25.3 0.7 17 24-40 14-30 (264)
171 3rwb_A TPLDH, pyridoxal 4-dehy 25.6 20 0.00069 24.6 0.7 17 24-40 16-32 (247)
172 3gvc_A Oxidoreductase, probabl 25.5 24 0.00084 24.9 1.2 17 24-40 39-55 (277)
173 3n74_A 3-ketoacyl-(acyl-carrie 25.5 20 0.0007 24.4 0.7 17 24-40 19-35 (261)
174 3is3_A 17BETA-hydroxysteroid d 25.5 20 0.00069 24.9 0.7 31 10-40 11-44 (270)
175 2ep4_A Ring finger protein 24; 25.5 23 0.00078 20.0 0.8 13 75-87 39-51 (74)
176 4e6p_A Probable sorbitol dehyd 25.4 20 0.0007 24.6 0.7 17 24-40 18-34 (259)
177 4eso_A Putative oxidoreductase 25.4 20 0.0007 24.8 0.7 17 24-40 18-34 (255)
178 2h7i_A Enoyl-[acyl-carrier-pro 25.4 25 0.00086 24.3 1.2 17 24-40 19-35 (269)
179 3ppi_A 3-hydroxyacyl-COA dehyd 25.3 21 0.0007 24.8 0.7 17 24-40 40-56 (281)
180 1dhr_A Dihydropteridine reduct 25.2 19 0.00066 24.4 0.6 17 24-40 17-33 (241)
181 2ekp_A 2-deoxy-D-gluconate 3-d 25.2 21 0.00071 24.2 0.7 17 24-40 12-28 (239)
182 3pk0_A Short-chain dehydrogena 25.1 21 0.00071 24.8 0.7 17 24-40 20-36 (262)
183 2jah_A Clavulanic acid dehydro 25.0 21 0.00072 24.5 0.7 17 24-40 17-33 (247)
184 2ptg_A Enoyl-acyl carrier redu 25.0 26 0.00088 25.0 1.2 17 24-40 21-37 (319)
185 2zat_A Dehydrogenase/reductase 24.9 21 0.00072 24.4 0.7 17 24-40 24-40 (260)
186 3ezl_A Acetoacetyl-COA reducta 24.9 18 0.00061 24.6 0.3 17 24-40 23-39 (256)
187 3gem_A Short chain dehydrogena 24.9 23 0.00079 24.7 0.9 17 24-40 37-53 (260)
188 2jhn_A ALKA, 3-methyladenine D 24.9 28 0.00096 25.7 1.4 22 19-40 211-232 (295)
189 4dmm_A 3-oxoacyl-[acyl-carrier 24.8 21 0.00072 25.0 0.7 17 24-40 38-54 (269)
190 3pgx_A Carveol dehydrogenase; 24.7 21 0.00073 24.8 0.7 17 24-40 25-41 (280)
191 2ew8_A (S)-1-phenylethanol deh 24.7 21 0.00073 24.4 0.7 17 24-40 17-33 (249)
192 2o2s_A Enoyl-acyl carrier redu 24.7 24 0.00084 25.1 1.0 17 24-40 21-37 (315)
193 3ilm_A ALR3790 protein; rhodan 24.7 21 0.00073 23.1 0.7 22 28-49 70-91 (141)
194 3uxy_A Short-chain dehydrogena 24.7 21 0.00073 25.0 0.7 17 24-40 38-54 (266)
195 3tl3_A Short-chain type dehydr 24.7 19 0.00065 24.7 0.4 17 24-40 19-35 (257)
196 2uvd_A 3-oxoacyl-(acyl-carrier 24.6 22 0.00074 24.2 0.7 17 24-40 14-30 (246)
197 3un1_A Probable oxidoreductase 24.6 21 0.00073 24.8 0.7 17 24-40 38-54 (260)
198 3u5t_A 3-oxoacyl-[acyl-carrier 24.6 19 0.00065 25.3 0.4 17 24-40 37-53 (267)
199 3sju_A Keto reductase; short-c 24.6 22 0.00074 25.0 0.7 17 24-40 34-50 (279)
200 3uf0_A Short-chain dehydrogena 24.5 22 0.00074 25.1 0.7 17 24-40 41-57 (273)
201 3nyw_A Putative oxidoreductase 24.5 19 0.00066 24.8 0.4 16 24-39 17-32 (250)
202 1iy8_A Levodione reductase; ox 24.5 22 0.00074 24.5 0.7 17 24-40 23-39 (267)
203 4g81_D Putative hexonate dehyd 24.5 21 0.00074 25.8 0.7 17 24-40 19-35 (255)
204 3ijr_A Oxidoreductase, short c 24.4 22 0.00074 25.2 0.7 17 24-40 57-73 (291)
205 3tsc_A Putative oxidoreductase 24.4 22 0.00075 24.7 0.7 17 24-40 21-37 (277)
206 3s55_A Putative short-chain de 24.3 22 0.00075 24.7 0.7 17 24-40 20-36 (281)
207 2wyu_A Enoyl-[acyl carrier pro 24.3 24 0.00083 24.3 0.9 17 24-40 20-36 (261)
208 1uay_A Type II 3-hydroxyacyl-C 24.2 20 0.00068 23.7 0.4 17 24-40 12-28 (242)
209 3lf2_A Short chain oxidoreduct 24.2 22 0.00076 24.6 0.7 17 24-40 18-34 (265)
210 1hxh_A 3BETA/17BETA-hydroxyste 24.1 22 0.00076 24.3 0.7 17 24-40 16-32 (253)
211 3gk3_A Acetoacetyl-COA reducta 24.1 21 0.00071 24.7 0.6 17 24-40 35-51 (269)
212 2xhi_A N-glycosylase/DNA lyase 24.1 24 0.00081 27.2 0.9 23 19-41 254-276 (360)
213 1nff_A Putative oxidoreductase 24.1 22 0.00076 24.6 0.7 17 24-40 17-33 (260)
214 1ooe_A Dihydropteridine reduct 24.1 19 0.00065 24.3 0.3 17 24-40 13-29 (236)
215 3uve_A Carveol dehydrogenase ( 24.1 22 0.00076 24.7 0.7 17 24-40 21-37 (286)
216 3vtz_A Glucose 1-dehydrogenase 24.0 22 0.00077 24.9 0.7 17 24-40 24-40 (269)
217 4b79_A PA4098, probable short- 24.0 22 0.00076 25.8 0.7 17 24-40 21-37 (242)
218 2pd4_A Enoyl-[acyl-carrier-pro 24.0 26 0.00089 24.3 1.0 17 24-40 18-34 (275)
219 3tzq_B Short-chain type dehydr 24.0 23 0.00077 24.7 0.7 17 24-40 21-37 (271)
220 3r3s_A Oxidoreductase; structu 23.9 22 0.00077 25.2 0.7 17 24-40 59-75 (294)
221 1uzm_A 3-oxoacyl-[acyl-carrier 23.9 23 0.00078 24.3 0.7 17 24-40 25-41 (247)
222 3gdg_A Probable NADP-dependent 23.9 28 0.00095 23.7 1.2 17 24-40 32-48 (267)
223 3ak4_A NADH-dependent quinucli 23.9 23 0.00078 24.3 0.7 17 24-40 22-38 (263)
224 2zjr_L 50S ribosomal protein L 23.8 22 0.00076 23.8 0.6 31 19-49 64-94 (114)
225 1cyd_A Carbonyl reductase; sho 23.8 23 0.00079 23.6 0.7 17 24-40 17-33 (244)
226 2fwm_X 2,3-dihydro-2,3-dihydro 23.8 23 0.00078 24.2 0.7 17 24-40 17-33 (250)
227 1uls_A Putative 3-oxoacyl-acyl 23.8 23 0.00078 24.2 0.7 17 24-40 15-31 (245)
228 3gaf_A 7-alpha-hydroxysteroid 23.8 20 0.00069 24.7 0.4 17 24-40 22-38 (256)
229 4egf_A L-xylulose reductase; s 23.7 23 0.00078 24.6 0.7 17 24-40 30-46 (266)
230 2ecw_A Tripartite motif-contai 23.7 28 0.00095 19.7 1.0 13 75-87 40-52 (85)
231 3ftp_A 3-oxoacyl-[acyl-carrier 23.6 23 0.00079 24.9 0.7 17 24-40 38-54 (270)
232 2ae2_A Protein (tropinone redu 23.6 23 0.00079 24.3 0.7 17 24-40 19-35 (260)
233 2d1y_A Hypothetical protein TT 23.6 23 0.00079 24.3 0.7 17 24-40 16-32 (256)
234 2ag5_A DHRS6, dehydrogenase/re 23.6 23 0.0008 24.1 0.7 17 24-40 16-32 (246)
235 3v2h_A D-beta-hydroxybutyrate 23.5 23 0.00079 24.9 0.7 17 24-40 35-51 (281)
236 3t4x_A Oxidoreductase, short c 23.5 23 0.00079 24.5 0.7 17 24-40 20-36 (267)
237 3fhf_A Mjogg, N-glycosylase/DN 23.5 21 0.00072 25.8 0.5 21 19-39 125-147 (214)
238 1o5i_A 3-oxoacyl-(acyl carrier 23.5 23 0.0008 24.3 0.7 17 24-40 29-45 (249)
239 2wsb_A Galactitol dehydrogenas 23.5 24 0.0008 23.7 0.7 17 24-40 21-37 (254)
240 1edo_A Beta-keto acyl carrier 23.5 24 0.00081 23.6 0.7 17 24-40 11-27 (244)
241 1mxh_A Pteridine reductase 2; 23.5 23 0.0008 24.3 0.7 17 24-40 21-37 (276)
242 3tox_A Short chain dehydrogena 23.5 23 0.0008 25.1 0.7 17 24-40 18-34 (280)
243 2qq5_A DHRS1, dehydrogenase/re 23.4 23 0.0008 24.3 0.7 17 24-40 15-31 (260)
244 2p91_A Enoyl-[acyl-carrier-pro 23.3 29 0.001 24.2 1.2 21 20-40 26-49 (285)
245 4dqx_A Probable oxidoreductase 23.3 24 0.0008 24.9 0.7 18 23-40 36-53 (277)
246 3zv4_A CIS-2,3-dihydrobiphenyl 23.2 24 0.00081 24.8 0.7 17 24-40 15-31 (281)
247 4dry_A 3-oxoacyl-[acyl-carrier 23.2 24 0.00081 25.0 0.7 17 24-40 43-59 (281)
248 1zem_A Xylitol dehydrogenase; 23.2 24 0.00082 24.3 0.7 17 24-40 17-33 (262)
249 3ai3_A NADPH-sorbose reductase 23.2 24 0.00082 24.2 0.7 17 24-40 17-33 (263)
250 1spx_A Short-chain reductase f 23.1 24 0.00082 24.3 0.7 17 24-40 16-32 (278)
251 1x1t_A D(-)-3-hydroxybutyrate 23.1 24 0.00082 24.2 0.7 17 24-40 14-30 (260)
252 2kiz_A E3 ubiquitin-protein li 23.1 27 0.00093 19.4 0.8 12 76-87 39-50 (69)
253 3rd5_A Mypaa.01249.C; ssgcid, 23.1 24 0.00082 24.7 0.7 17 24-40 26-42 (291)
254 1hdc_A 3-alpha, 20 beta-hydrox 23.1 24 0.00082 24.3 0.7 17 24-40 15-31 (254)
255 3t7c_A Carveol dehydrogenase; 22.9 24 0.00083 25.0 0.7 17 24-40 38-54 (299)
256 1ae1_A Tropinone reductase-I; 22.9 24 0.00083 24.5 0.7 17 24-40 31-47 (273)
257 4da9_A Short-chain dehydrogena 22.8 24 0.00083 24.8 0.7 37 4-40 12-55 (280)
258 3rkr_A Short chain oxidoreduct 22.8 24 0.00084 24.3 0.7 18 23-40 38-55 (262)
259 4dyv_A Short-chain dehydrogena 22.8 24 0.00083 24.8 0.7 34 7-40 15-54 (272)
260 1klx_A Cysteine rich protein B 22.8 1.2E+02 0.0042 18.5 4.0 38 32-69 49-90 (138)
261 3e03_A Short chain dehydrogena 22.8 24 0.00083 24.6 0.7 17 24-40 16-32 (274)
262 3grp_A 3-oxoacyl-(acyl carrier 22.8 24 0.00084 24.7 0.7 17 24-40 37-53 (266)
263 4imr_A 3-oxoacyl-(acyl-carrier 22.8 24 0.00084 24.8 0.7 17 24-40 43-59 (275)
264 1zk4_A R-specific alcohol dehy 22.8 25 0.00085 23.6 0.7 17 24-40 16-32 (251)
265 2ehd_A Oxidoreductase, oxidore 22.8 25 0.00085 23.4 0.7 17 24-40 15-31 (234)
266 4fgs_A Probable dehydrogenase 22.8 24 0.00083 25.9 0.7 34 24-65 39-72 (273)
267 1geg_A Acetoin reductase; SDR 22.8 25 0.00084 24.1 0.7 17 24-40 12-28 (256)
268 2cfc_A 2-(R)-hydroxypropyl-COM 22.7 25 0.00085 23.5 0.7 17 24-40 12-28 (250)
269 2hq1_A Glucose/ribitol dehydro 22.7 25 0.00085 23.5 0.7 17 24-40 15-31 (247)
270 2dtx_A Glucose 1-dehydrogenase 22.7 25 0.00084 24.5 0.7 17 24-40 18-34 (264)
271 3qv0_A Mitochondrial acidic pr 22.6 1E+02 0.0034 22.7 4.1 38 28-66 184-222 (227)
272 3foj_A Uncharacterized protein 22.6 21 0.00071 21.4 0.3 23 27-50 69-91 (100)
273 2z1n_A Dehydrogenase; reductas 22.5 25 0.00086 24.1 0.7 17 24-40 17-33 (260)
274 1vl8_A Gluconate 5-dehydrogena 22.5 25 0.00086 24.5 0.7 17 24-40 31-47 (267)
275 3afn_B Carbonyl reductase; alp 22.4 25 0.00087 23.4 0.7 17 24-40 17-33 (258)
276 1xkq_A Short-chain reductase f 22.4 25 0.00086 24.4 0.7 17 24-40 16-32 (280)
277 4ibo_A Gluconate dehydrogenase 22.4 25 0.00086 24.7 0.7 17 24-40 36-52 (271)
278 2hhg_A Hypothetical protein RP 22.4 22 0.00075 22.3 0.4 22 28-49 100-121 (139)
279 3v8b_A Putative dehydrogenase, 22.4 25 0.00086 24.8 0.7 17 24-40 38-54 (283)
280 2q2v_A Beta-D-hydroxybutyrate 22.3 25 0.00087 24.0 0.7 17 24-40 14-30 (255)
281 1g0o_A Trihydroxynaphthalene r 22.2 26 0.00088 24.5 0.7 17 24-40 39-55 (283)
282 3r8s_O 50S ribosomal protein L 22.2 28 0.00096 23.2 0.9 34 17-50 64-97 (116)
283 3k31_A Enoyl-(acyl-carrier-pro 22.2 31 0.0011 24.4 1.2 21 20-40 35-58 (296)
284 3ksu_A 3-oxoacyl-acyl carrier 22.2 21 0.0007 24.9 0.2 17 24-40 21-37 (262)
285 4fn4_A Short chain dehydrogena 22.1 26 0.00087 25.4 0.7 34 24-65 17-50 (254)
286 3rjv_A Putative SEL1 repeat pr 22.1 1.7E+02 0.0057 18.9 5.0 39 33-71 78-120 (212)
287 3sc4_A Short chain dehydrogena 22.1 24 0.00082 24.8 0.6 17 24-40 19-35 (285)
288 4hp8_A 2-deoxy-D-gluconate 3-d 22.0 26 0.00088 25.6 0.7 17 24-40 19-35 (247)
289 3awd_A GOX2181, putative polyo 22.0 26 0.00089 23.6 0.7 17 24-40 23-39 (260)
290 2bgk_A Rhizome secoisolaricire 22.0 26 0.00089 23.8 0.7 17 24-40 26-42 (278)
291 2o23_A HADH2 protein; HSD17B10 21.9 26 0.0009 23.6 0.7 17 24-40 22-38 (265)
292 3d3w_A L-xylulose reductase; u 21.9 26 0.00091 23.4 0.7 17 24-40 17-33 (244)
293 3tfx_A Orotidine 5'-phosphate 21.8 31 0.0011 25.6 1.2 55 11-67 171-236 (259)
294 3ldv_A Orotidine 5'-phosphate 21.8 23 0.0008 26.2 0.5 53 11-65 189-252 (255)
295 2x9g_A PTR1, pteridine reducta 21.6 24 0.00081 24.7 0.4 17 24-40 33-49 (288)
296 2pnf_A 3-oxoacyl-[acyl-carrier 21.6 27 0.00093 23.2 0.7 17 24-40 17-33 (248)
297 3n0u_A Probable N-glycosylase/ 21.5 24 0.00083 25.4 0.5 21 19-39 130-152 (219)
298 4fc7_A Peroxisomal 2,4-dienoyl 21.5 25 0.00086 24.6 0.6 17 24-40 37-53 (277)
299 3qw3_A Orotidine-5-phosphate d 21.5 27 0.00091 25.7 0.7 53 2-56 178-237 (255)
300 2b4q_A Rhamnolipids biosynthes 21.5 27 0.00092 24.5 0.7 17 24-40 39-55 (276)
301 3svt_A Short-chain type dehydr 21.5 27 0.00093 24.3 0.7 17 24-40 21-37 (281)
302 2ph3_A 3-oxoacyl-[acyl carrier 21.4 25 0.00087 23.3 0.6 17 24-40 11-27 (245)
303 2ecj_A Tripartite motif-contai 21.4 27 0.00094 18.5 0.6 11 76-86 37-47 (58)
304 1yde_A Retinal dehydrogenase/r 21.4 27 0.00093 24.4 0.7 17 24-40 19-35 (270)
305 2ct2_A Tripartite motif protei 21.4 30 0.001 19.9 0.8 13 75-87 40-52 (88)
306 3uce_A Dehydrogenase; rossmann 21.4 16 0.00055 24.5 -0.5 17 24-40 16-32 (223)
307 3ioy_A Short-chain dehydrogena 21.4 33 0.0011 24.7 1.2 17 24-40 18-34 (319)
308 3m1a_A Putative dehydrogenase; 21.3 27 0.00094 24.1 0.7 17 24-40 15-31 (281)
309 2nm0_A Probable 3-oxacyl-(acyl 21.3 27 0.00094 24.2 0.7 17 24-40 31-47 (253)
310 3rih_A Short chain dehydrogena 21.2 27 0.00094 25.0 0.7 17 24-40 51-67 (293)
311 3a28_C L-2.3-butanediol dehydr 21.2 25 0.00084 24.1 0.4 17 24-40 12-28 (258)
312 2a4k_A 3-oxoacyl-[acyl carrier 21.2 28 0.00095 24.3 0.7 17 24-40 16-32 (263)
313 3ctm_A Carbonyl reductase; alc 21.1 31 0.001 23.7 0.9 17 24-40 44-60 (279)
314 3ajx_A 3-hexulose-6-phosphate 21.0 89 0.003 20.7 3.2 45 17-63 158-202 (207)
315 3v2d_S 50S ribosomal protein L 21.0 31 0.0011 23.0 0.9 32 19-50 62-93 (112)
316 3r8n_M 30S ribosomal protein S 20.9 59 0.002 21.6 2.3 22 20-41 18-40 (114)
317 2pd6_A Estradiol 17-beta-dehyd 20.9 29 0.00098 23.4 0.7 17 24-40 17-33 (264)
318 1dgs_A DNA ligase; AMP complex 20.8 79 0.0027 26.7 3.5 30 5-39 433-462 (667)
319 2ipq_X Hypothetical protein ST 20.7 40 0.0014 23.0 1.5 12 56-67 8-19 (135)
320 2gdz_A NAD+-dependent 15-hydro 20.7 29 0.00099 23.8 0.7 17 24-40 17-33 (267)
321 2dkn_A 3-alpha-hydroxysteroid 20.7 29 0.001 22.9 0.7 17 24-40 11-27 (255)
322 1xq1_A Putative tropinone redu 20.7 29 0.00099 23.6 0.7 17 24-40 24-40 (266)
323 3n5n_X A/G-specific adenine DN 20.6 27 0.00091 26.4 0.6 23 19-41 129-152 (287)
324 1tq1_A AT5G66040, senescence-a 20.6 13 0.00046 23.4 -1.0 23 27-49 95-117 (129)
325 3r1i_A Short-chain type dehydr 20.4 29 0.001 24.4 0.7 17 24-40 42-58 (276)
326 2rhc_B Actinorhodin polyketide 20.4 29 0.001 24.2 0.7 17 24-40 32-48 (277)
327 4gkb_A 3-oxoacyl-[acyl-carrier 20.4 29 0.001 25.0 0.7 17 24-40 17-33 (258)
328 3gk5_A Uncharacterized rhodane 20.3 26 0.00087 21.4 0.4 22 27-49 68-89 (108)
329 1e7w_A Pteridine reductase; di 20.2 30 0.001 24.4 0.7 17 24-40 19-35 (291)
330 3qlj_A Short chain dehydrogena 20.2 30 0.001 24.8 0.7 17 24-40 37-53 (322)
331 1ovy_A 50S ribosomal protein L 20.2 28 0.00096 23.4 0.6 32 19-50 70-101 (120)
332 2k5l_A FEOA; structure, NESG, 20.2 39 0.0013 20.2 1.2 27 14-41 8-35 (81)
333 1xhl_A Short-chain dehydrogena 20.2 30 0.001 24.6 0.7 17 24-40 36-52 (297)
334 3tjr_A Short chain dehydrogena 20.2 30 0.001 24.6 0.7 17 24-40 41-57 (301)
335 3oec_A Carveol dehydrogenase ( 20.1 30 0.001 24.9 0.7 17 24-40 56-72 (317)
336 1gee_A Glucose 1-dehydrogenase 20.0 31 0.001 23.3 0.7 17 24-40 17-33 (261)
No 1
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=100.00 E-value=1.3e-61 Score=325.70 Aligned_cols=89 Identities=70% Similarity=1.335 Sum_probs=88.3
Q ss_pred CcchHHHHhhhhCCCCCCCcccccCccHHHHHhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHHhhccchhhHhHHHHH
Q psy6806 1 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETCQANAKQSGDCYNC 80 (89)
Q Consensus 1 ~~tS~Khr~Fv~ePMg~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~~~gAn~kqa~dc~~c 80 (89)
|||||||||||+||||||+|++||||||++|++|+++|||||||||||||+|+||+++|++||+++||||+||++|||+|
T Consensus 1 ~~ts~Kh~~Fv~EPmgeK~V~evpGIG~~~~~~L~~~Gf~kAy~lLGqFL~l~kd~~~F~~WLk~~~gan~kq~~dc~~c 80 (89)
T 1ci4_A 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGANAKQSRDCFGC 80 (89)
T ss_dssp CCSCHHHHHHHTSCCTTCCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CcccHHHHHHHhCCCCCCCcccCCCcCHHHHHHHHHcCccHHHHHHHHHHHcCCCHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q psy6806 81 LKDWCGEFL 89 (89)
Q Consensus 81 l~eWc~~fl 89 (89)
|+|||++||
T Consensus 81 l~eWc~~fl 89 (89)
T 1ci4_A 81 LREWCDAFL 89 (89)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999999997
No 2
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.16 E-value=0.025 Score=41.30 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=26.6
Q ss_pred CCCCCcccccCccHHHHHhHHhcCCchhhHhhhh
Q psy6806 15 MGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQ 48 (89)
Q Consensus 15 Mg~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLGq 48 (89)
|++ ++..||||++.++++|++.||...-.++-+
T Consensus 1 ~~~-~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~ 33 (322)
T 2i1q_A 1 MGD-NLTDLPGVGPSTAEKLVEAGYIDFMKIATA 33 (322)
T ss_dssp -----CTTSTTCCHHHHHHHHHHTCCSHHHHHTC
T ss_pred Ccc-cHhhcCCCCHHHHHHHHHcCCCcHHHHHhC
Confidence 564 899999999999999999999998877653
No 3
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=94.96 E-value=0.024 Score=37.07 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=27.5
Q ss_pred CCCcccccCccHHHHHhHHhcCCchhhHhhh
Q psy6806 17 EKPVTELAGVGDVLGKRLESKGFDKAYVVLG 47 (89)
Q Consensus 17 ~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLG 47 (89)
-+.+++||+|||++.+.|.+.||..+-.|-+
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~ 33 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKD 33 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred hHHhhcCCCCCHHHHHHHHHcCCCCHHHHHh
Confidence 3569999999999999999999999877754
No 4
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=94.45 E-value=0.021 Score=43.19 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=27.3
Q ss_pred CCCcccccCccHHHHHhHHhcCCchhhHhh
Q psy6806 17 EKPVTELAGVGDVLGKRLESKGFDKAYVVL 46 (89)
Q Consensus 17 ~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lL 46 (89)
.-||++|+|||+.++++|...|+.++..|.
T Consensus 177 ~lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~ 206 (356)
T 4dez_A 177 DRPPDALWGVGPKTTKKLAAMGITTVADLA 206 (356)
T ss_dssp TSCGGGSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred cCcHHHHcCCchhHHHHHHHcCCCeecccc
Confidence 468999999999999999999999987774
No 5
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=94.00 E-value=0.017 Score=35.74 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=25.2
Q ss_pred CcccccCccHHHHHhHHhcCCchhhHhhh
Q psy6806 19 PVTELAGVGDVLGKRLESKGFDKAYVVLG 47 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLG 47 (89)
++.+||||++....+|.+.||..---|..
T Consensus 8 ~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~ 36 (70)
T 1wcn_A 8 DLLNLEGVDRDLAFKLAARGVCTLEDLAE 36 (70)
T ss_dssp HHHSSTTCCHHHHHHHHTTTCCSHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHcCCCcHHHHHc
Confidence 68899999999999999999998665544
No 6
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=93.93 E-value=0.024 Score=41.00 Aligned_cols=29 Identities=34% Similarity=0.633 Sum_probs=24.9
Q ss_pred CCcccccCccHHHHHhHHhcCCchhhHhh
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDKAYVVL 46 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lL 46 (89)
-||++|||||+.+.++|...|+.+...|.
T Consensus 184 lpv~~l~giG~~~~~~L~~~Gi~TigdL~ 212 (221)
T 1im4_A 184 LDIDEIPGIGSVLARRLNELGIQKLRDIL 212 (221)
T ss_dssp CBGGGSTTCCHHHHHHHHHTTCCBTTC--
T ss_pred CCcccccCCCHHHHHHHHHcCCCcHHHHH
Confidence 48999999999999999999999876654
No 7
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=93.64 E-value=0.037 Score=41.75 Aligned_cols=29 Identities=21% Similarity=0.523 Sum_probs=26.2
Q ss_pred CCcccccCccHHHHHhHHhcCCchhhHhh
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDKAYVVL 46 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lL 46 (89)
-||++|||||+.++++|...|+.....|.
T Consensus 178 lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~ 206 (352)
T 1jx4_A 178 LDIADVPGIGNITAEKLKKLGINKLVDTL 206 (352)
T ss_dssp SBGGGSTTCCHHHHHHHHTTTCCBGGGGG
T ss_pred CCCCcccccCHHHHHHHHHcCCchHHHHH
Confidence 48999999999999999999999977664
No 8
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=93.38 E-value=0.036 Score=41.89 Aligned_cols=30 Identities=33% Similarity=0.616 Sum_probs=26.5
Q ss_pred CCcccccCccHHHHHhHHhcCCchhhHhhh
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDKAYVVLG 47 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLG 47 (89)
-||++|||||+.++++|...|+.....|..
T Consensus 179 lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~ 208 (354)
T 3bq0_A 179 LDIDEIPGIGSVLARRLNELGIQKLRDILS 208 (354)
T ss_dssp CBSTTSTTCCHHHHHHHTTTTCCBGGGGGG
T ss_pred CCcccccCcCHHHHHHHHHcCCccHHHHhc
Confidence 379999999999999999999999776653
No 9
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=93.14 E-value=0.085 Score=34.53 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=26.0
Q ss_pred CcccccCccHHHHHhHHhcCCchhhHhhh
Q psy6806 19 PVTELAGVGDVLGKRLESKGFDKAYVVLG 47 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLG 47 (89)
.+++||.|||++.+.|.+.||+.+..|-+
T Consensus 5 ~L~dLPNig~~~e~~L~~~GI~t~~~Lr~ 33 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKD 33 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHcCCCCHHHHHh
Confidence 48999999999999999999999877644
No 10
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=93.13 E-value=0.039 Score=37.21 Aligned_cols=31 Identities=32% Similarity=0.586 Sum_probs=26.3
Q ss_pred CCCCCccccc--CccHHHHHhHHhcCCchhhHh
Q psy6806 15 MGEKPVTELA--GVGDVLGKRLESKGFDKAYVV 45 (89)
Q Consensus 15 Mg~K~Vt~l~--GIG~~lg~~L~~~Gf~kAy~l 45 (89)
=|..+|.+|+ ||||...++|.+.||...--|
T Consensus 20 ~~~~~I~~L~~~GIg~~~i~kL~eAG~~Tve~v 52 (114)
T 1b22_A 20 FGPQPISRLEQCGINANDVKKLEEAGFHTVEAV 52 (114)
T ss_dssp SSCCCHHHHHHTTCSHHHHHHHHTTCCSSGGGB
T ss_pred cCCccHHHHHhcCCCHHHHHHHHHcCcCcHHHH
Confidence 3445899999 999999999999999996655
No 11
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=92.30 E-value=0.074 Score=41.62 Aligned_cols=32 Identities=25% Similarity=0.221 Sum_probs=27.6
Q ss_pred CCCCcccccCccHHHHHhHHh--cCCchhhHhhh
Q psy6806 16 GEKPVTELAGVGDVLGKRLES--KGFDKAYVVLG 47 (89)
Q Consensus 16 g~K~Vt~l~GIG~~lg~~L~~--~Gf~kAy~lLG 47 (89)
..-||++|||||+.++++|.+ .|+.....|..
T Consensus 239 ~~lpv~~l~GiG~~~~~~L~~~~~GI~ti~dL~~ 272 (434)
T 2aq4_A 239 SSFKLDDLPGVGHSTLSRLESTFDSPHSLNDLRK 272 (434)
T ss_dssp TTCCGGGSTTCCHHHHHHHHHHTTCCCSHHHHHH
T ss_pred hcCCcccccCcCHHHHHHHHHhcCCceEHHHHHh
Confidence 345899999999999999999 89998777654
No 12
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.27 E-value=0.086 Score=39.89 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=26.6
Q ss_pred CCCcccccCccHHHHHhHHhcCCchhhHhh
Q psy6806 17 EKPVTELAGVGDVLGKRLESKGFDKAYVVL 46 (89)
Q Consensus 17 ~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lL 46 (89)
..++.+||||++...++|.+.||...--++
T Consensus 34 ~~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~ 63 (349)
T 1pzn_A 34 IRSIEDLPGVGPATAEKLREAGYDTLEAIA 63 (349)
T ss_dssp -CCSSCCTTCCHHHHHHHHTTTCCSHHHHH
T ss_pred cccHHHcCCCCHHHHHHHHHcCCCcHHHHH
Confidence 457999999999999999999999977775
No 13
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=91.96 E-value=0.094 Score=41.19 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=25.2
Q ss_pred CcccccCccHHHHHhHHhcCCchhhHhh
Q psy6806 19 PVTELAGVGDVLGKRLESKGFDKAYVVL 46 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~Gf~kAy~lL 46 (89)
+|++|+|||+.++++|.+.|+.....|.
T Consensus 235 pv~~l~GIG~~t~~~L~~lGI~TigdLa 262 (420)
T 3osn_A 235 HIKEIPGIGYKTAKCLEALGINSVRDLQ 262 (420)
T ss_dssp SGGGSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred cHHHccCCCHHHHHHHHHhCCCcHHHHh
Confidence 5999999999999999999999876664
No 14
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=91.82 E-value=0.056 Score=41.45 Aligned_cols=29 Identities=34% Similarity=0.633 Sum_probs=26.1
Q ss_pred CCcccccCccHHHHHhHHhcCCchhhHhh
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDKAYVVL 46 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lL 46 (89)
-||++|||||+.++++|...|+.+...|.
T Consensus 179 lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~ 207 (362)
T 4f4y_A 179 LDIDEIPGIGSVLARRLNELGIQKLRDIL 207 (362)
T ss_dssp CBSTTSTTCCSTTHHHHHHTTCCBGGGGT
T ss_pred CChhhccCCCHHHHHHHHHcCCChHHHHh
Confidence 38999999999999999999999877654
No 15
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=91.45 E-value=0.11 Score=42.32 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=26.1
Q ss_pred CCcccccCccHHHHHhHHhcCCchhhHhh
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDKAYVVL 46 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lL 46 (89)
-||++|+|||+.++++|...|+.....|.
T Consensus 315 LPV~~l~GIG~~t~~kL~~lGI~TigDLa 343 (504)
T 3gqc_A 315 QLVTNLPGVGHSMESKLASLGIKTCGDLQ 343 (504)
T ss_dssp SBGGGSTTCCHHHHHHHHHTTCCBHHHHT
T ss_pred CChhHhhCcCHHHHHHHHHcCCCcHHHHH
Confidence 48999999999999999999999876664
No 16
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=90.88 E-value=0.13 Score=40.44 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=28.0
Q ss_pred CCCCCcccccCccHHHHHhHHhcCCchhhHhhh
Q psy6806 15 MGEKPVTELAGVGDVLGKRLESKGFDKAYVVLG 47 (89)
Q Consensus 15 Mg~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLG 47 (89)
|..-||++|+|||+.++++|+..|+.....|..
T Consensus 279 L~~lpv~~l~GiG~~~~~~L~~lGI~T~gdL~~ 311 (459)
T 1t94_A 279 IKDLPIRKVSGIGKVTEKMLKALGIITCTELYQ 311 (459)
T ss_dssp HTTCBGGGCTTSCHHHHHHHHHTTCCBHHHHHH
T ss_pred HHcCCHHhcCCcCHHHHHHHHHcCCCcHHHHHh
Confidence 344589999999999999999999999877653
No 17
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=90.48 E-value=0.14 Score=41.36 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=30.7
Q ss_pred HHhhhhCCCCCCCcccccCccHHHHHhHHhcCCchhhHhhh
Q psy6806 7 HQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLG 47 (89)
Q Consensus 7 hr~Fv~ePMg~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLG 47 (89)
-.+|+. .-||++|||||+.+.++|...|+.....|.-
T Consensus 331 v~~fL~----~LPV~kl~GIG~~t~~~L~~lGI~TigDL~~ 367 (517)
T 3pzp_A 331 VMDFIK----DLPIRKVSGIGKVTEKMLKALGIITCTELYQ 367 (517)
T ss_dssp HHHHHT----TCBGGGSTTCCHHHHHHHHHTTCCBHHHHHH
T ss_pred HHHHHh----cCChhhhccccHHHHHHHHHhCCCcHHHHHh
Confidence 345654 3489999999999999999999999887754
No 18
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.27 E-value=0.091 Score=38.82 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=0.0
Q ss_pred hCCCCCCCcccccCccHHHHHhHHhcCCchhhHhhh
Q psy6806 12 SEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLG 47 (89)
Q Consensus 12 ~ePMg~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLG 47 (89)
+++=+..++.+||||++...++|.+.||...-.++-
T Consensus 6 ~~~~~~~~~~~l~g~~~~~~~~l~~~g~~t~~~~~~ 41 (324)
T 2z43_A 6 EQKKNIKTINDLPGISQTVINKLIEAGYSSLETLAV 41 (324)
T ss_dssp ------------------------------------
T ss_pred cCCCCCccHHHcCCCCHHHHHHHHHcCCCcHHHHHc
Confidence 445556689999999999999999999998877653
No 19
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=86.03 E-value=0.33 Score=38.07 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=24.6
Q ss_pred CCcccccCccHHHHHh-HHhcCCchhhHhh
Q psy6806 18 KPVTELAGVGDVLGKR-LESKGFDKAYVVL 46 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~-L~~~Gf~kAy~lL 46 (89)
-||++|+|||+.++.+ |...|+.....|.
T Consensus 253 lpv~~l~GiG~~~~~~lL~~lGI~TigdLa 282 (435)
T 4ecq_A 253 MPIRKIRSLGGKLGASVIEILGIEYMGELT 282 (435)
T ss_dssp CBGGGSTTCSSHHHHHHHHHHTCCBGGGGG
T ss_pred CCHHHhcCCCHHHHHHHHHHcCCCcHHHHh
Confidence 4899999999998877 7999999876554
No 20
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=84.78 E-value=0.36 Score=31.64 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=21.0
Q ss_pred CCcccccCccHHHHHhHHhc-CCchhhHh
Q psy6806 18 KPVTELAGVGDVLGKRLESK-GFDKAYVV 45 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~-Gf~kAy~l 45 (89)
..+..||||||.++++..+. +|...-.|
T Consensus 26 ~eL~~lpGIG~~~A~~IV~~GpF~s~edL 54 (97)
T 3arc_U 26 AAFIQYRGLYPTLAKLIVKNAPYESVEDV 54 (97)
T ss_dssp GGGGGSTTCTTHHHHHHHHHCCCSSGGGG
T ss_pred HHHhHCCCCCHHHHHHHHHcCCCCCHHHH
Confidence 36788999999999999884 35554444
No 21
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=84.38 E-value=0.99 Score=28.81 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=43.9
Q ss_pred CCCCCcccccCccHHHHHhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHHhhccchhhHhHHHHHHHH
Q psy6806 15 MGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETCQANAKQSGDCYNCLKD 83 (89)
Q Consensus 15 Mg~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~~~gAn~kqa~dc~~cl~e 83 (89)
|+.+.+...||+.+.+.++|+.+|+..++-++ ..|++. |...+|.+-+....--+.|..
T Consensus 1 m~~l~~~~~p~Lse~~~~~L~~~~I~Tv~Dfl------~~d~~e----L~~~~~ls~~~v~~l~r~l~~ 59 (83)
T 2kz3_A 1 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLV------SADLEE----VAQKCGLSYKALVALRRVLLA 59 (83)
T ss_dssp CCCCCTTSSTTCCHHHHHHHHHTTCCCHHHHT------TSCHHH----HHHHHTCCHHHHHHHHHHHHH
T ss_pred CCccccccCCCCCHHHHHHHHHCCCCCHHHHH------hCCHHH----HHHHhCCCHHHHHHHHHHHHH
Confidence 88899888999999999999999999987653 334333 566677777766655554443
No 22
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=83.51 E-value=0.32 Score=29.39 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.9
Q ss_pred CcccccCccHHHHHhHHhc
Q psy6806 19 PVTELAGVGDVLGKRLESK 37 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~ 37 (89)
.++.+|||||+.+++|.+.
T Consensus 25 ~L~~I~gIG~~~A~~Ll~~ 43 (78)
T 1kft_A 25 SLETIEGVGPKRRQMLLKY 43 (78)
T ss_dssp GGGGCTTCSSSHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHH
Confidence 5778999999999999875
No 23
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=83.24 E-value=0.57 Score=38.03 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=26.6
Q ss_pred HHhhhhC-CCCCCCcccccCccHHHHHhHHhc-CC---chhh
Q psy6806 7 HQNFVSE-PMGEKPVTELAGVGDVLGKRLESK-GF---DKAY 43 (89)
Q Consensus 7 hr~Fv~e-PMg~K~Vt~l~GIG~~lg~~L~~~-Gf---~kAy 43 (89)
.++|+.. |+ ||++|+|||+.++++|.+. |+ ..+.
T Consensus 298 ~~~fL~~~~l---PV~~l~GIG~~t~~~L~~llGI~~~~ti~ 336 (520)
T 3mfi_A 298 LLDFLDCGKF---EITSFWTLGGVLGKELIDVLDLPHENSIK 336 (520)
T ss_dssp HHHHHTSSSC---CGGGSTTCSSHHHHHHHHHTTCCSSSHHH
T ss_pred HHHHhhccCC---cHHHhcCCCHHHHHHHHHhcCCCcccchh
Confidence 4556653 33 8899999999999999998 99 5543
No 24
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=83.24 E-value=0.49 Score=28.34 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=16.3
Q ss_pred CcccccCccHHHHHhHHhc
Q psy6806 19 PVTELAGVGDVLGKRLESK 37 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~ 37 (89)
.+..+||||+..++++.+.
T Consensus 28 ~L~~ipGIG~~~A~~Il~~ 46 (75)
T 2duy_A 28 ELMALPGIGPVLARRIVEG 46 (75)
T ss_dssp HHTTSTTCCHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHH
Confidence 3678999999999999884
No 25
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=82.03 E-value=2.4 Score=31.62 Aligned_cols=58 Identities=9% Similarity=0.188 Sum_probs=41.2
Q ss_pred CCCCcccccCccHHHHHhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHHhhccchhhHhHHHHHHHH
Q psy6806 16 GEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETCQANAKQSGDCYNCLKD 83 (89)
Q Consensus 16 g~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~~~gAn~kqa~dc~~cl~e 83 (89)
.+-++..+||||+..+++|+++|+..-+.+. -+ +.+.-.+ ..+.+..|..+-++.++.
T Consensus 155 ~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~----~~--~~~e~~~----ll~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 155 VDNPLRQIPHFNNKILEKCKEINVETVYDIM----AL--EDEERDE----ILTLTDSQLAQVAAFVNN 212 (328)
T ss_dssp TSCGGGGSTTCCHHHHHHHHHTTCCSHHHHH----HS--CHHHHHH----HCCCCHHHHHHHHHHHHH
T ss_pred CCCceeCCCCCCHHHHHHHHhCCCCCHHHHh----cC--CHHHHHh----HhCCCHHHHHHHHHHHHh
Confidence 3457899999999999999999998765552 22 3333322 357788888877777654
No 26
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=81.05 E-value=0.67 Score=26.93 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=15.8
Q ss_pred cccccCccHHHHHhHHhc
Q psy6806 20 VTELAGVGDVLGKRLESK 37 (89)
Q Consensus 20 Vt~l~GIG~~lg~~L~~~ 37 (89)
++.+||||+..+++|.+.
T Consensus 16 L~~i~giG~~~a~~Ll~~ 33 (75)
T 1x2i_A 16 VEGLPHVSATLARRLLKH 33 (75)
T ss_dssp HTTSTTCCHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHH
Confidence 567999999999999873
No 27
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=79.62 E-value=0.43 Score=36.63 Aligned_cols=43 Identities=12% Similarity=0.222 Sum_probs=31.1
Q ss_pred HHHHhhhhCC--CCCCCcccccCccHHHHHhHHhcCCchhhHhhh
Q psy6806 5 QKHQNFVSEP--MGEKPVTELAGVGDVLGKRLESKGFDKAYVVLG 47 (89)
Q Consensus 5 ~Khr~Fv~eP--Mg~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLG 47 (89)
+++.+.-++| -+-...+.||||||..+++|-++|+..--.|.-
T Consensus 83 ~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~Gi~tledL~~ 127 (335)
T 2fmp_A 83 RKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRK 127 (335)
T ss_dssp HHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHT
T ss_pred HHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHH
Confidence 3444443333 444568899999999999999999998666653
No 28
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=79.42 E-value=0.38 Score=35.89 Aligned_cols=27 Identities=30% Similarity=0.534 Sum_probs=0.0
Q ss_pred CcccccCccHHHHHhHHhcCCchhhHh
Q psy6806 19 PVTELAGVGDVLGKRLESKGFDKAYVV 45 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~Gf~kAy~l 45 (89)
.+..||||||..+.+|-+.||...-.|
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~gf~sve~L 42 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREAGFESVEDV 42 (241)
T ss_dssp ---------------------------
T ss_pred HHhcCCCCCHHHHHHHHHcCCCCHHHH
Confidence 577899999999999988888764433
No 29
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=79.13 E-value=0.94 Score=31.73 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=21.3
Q ss_pred CcccccCccHHHHHhHHhc-CCchhhHhh
Q psy6806 19 PVTELAGVGDVLGKRLESK-GFDKAYVVL 46 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~-Gf~kAy~lL 46 (89)
..+.+|||||+.+++..+. +|...-.|+
T Consensus 64 eL~~LpGiGp~~A~~II~~GpF~svedL~ 92 (134)
T 1s5l_U 64 AFIQYRGLYPTLAKLIVKNAPYESVEDVL 92 (134)
T ss_dssp GGGGSTTCTHHHHHHHHHTCCCSSGGGGG
T ss_pred HHHHCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 4678999999999999875 466655543
No 30
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=76.83 E-value=0.54 Score=30.16 Aligned_cols=20 Identities=35% Similarity=0.420 Sum_probs=16.9
Q ss_pred CCcccccCccHHHHHhHHhc
Q psy6806 18 KPVTELAGVGDVLGKRLESK 37 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~ 37 (89)
+++.-|+|||+.++.+|.++
T Consensus 58 ~e~~~L~giG~ki~~~L~e~ 77 (87)
T 2kp7_A 58 KEAKILQHFGDRLCRMLDEK 77 (87)
T ss_dssp HHHHTCTTTCHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHHHHHH
Confidence 35677999999999999874
No 31
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=76.02 E-value=1.2 Score=37.66 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=28.3
Q ss_pred CCcccccCccHHHHHhHHhcCCchhhHhhhhh
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDKAYVVLGQF 49 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLGqf 49 (89)
.+|+.|+||||..++.|+..|+....-||=.|
T Consensus 115 ~~~~~l~gvg~~~~~~l~~lgi~~~~dll~~~ 146 (780)
T 1gm5_A 115 TDIQYAKGVGPNRKKKLKKLGIETLRDLLEFF 146 (780)
T ss_dssp CCSSSSSSCCHHHHHHHHTTTCCSSGGGTSCC
T ss_pred CCchhcCCCCHHHHHHHHHCCCCcHHHHHhhC
Confidence 48999999999999999999999988877543
No 32
>1zee_A Hypothetical protein SO4414; all alpha-protein., structural genomics, PSI, protein struct initiative; 2.31A {Shewanella oneidensis} SCOP: a.266.1.2 PDB: 2nwb_A*
Probab=75.13 E-value=1.5 Score=35.50 Aligned_cols=31 Identities=39% Similarity=0.626 Sum_probs=25.4
Q ss_pred CcccccCccHHHHHhHHh----------------cCCchhhHhhhhh
Q psy6806 19 PVTELAGVGDVLGKRLES----------------KGFDKAYVVLGQF 49 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~----------------~Gf~kAy~lLGqf 49 (89)
+=..|||||+.+-..|.+ .||+.||-+||.+
T Consensus 35 ~~~~v~g~~~~l~~~l~~~~~~~i~~ll~~g~t~~~f~~a~~ll~~v 81 (403)
T 1zee_A 35 DRANVQEVGTELKHTLESEGRELVKALLDEGNTDEGFDSAFDLLGNV 81 (403)
T ss_dssp SSSCCSSSCHHHHHHHHHHHHHHHHTTTTTSSSCCCHHHHHHHHHHH
T ss_pred cccCCccHHHHHHHHHHHcCchHHHHHHhccccchhhHHHHHHHHHH
Confidence 346799999999998876 6888999999654
No 33
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=74.71 E-value=1.3 Score=27.13 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=29.6
Q ss_pred cccccCccHHHHHhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHHhhccchhhHhHHHHH
Q psy6806 20 VTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETCQANAKQSGDCYNC 80 (89)
Q Consensus 20 Vt~l~GIG~~lg~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~~~gAn~kqa~dc~~c 80 (89)
++.+||||+..+++|.+. |.....+ +.-+.+. |...-|...+.+..-...
T Consensus 21 L~~IpgIG~~~A~~Ll~~-fgsl~~l------~~a~~~e----L~~i~GIG~~~a~~I~~~ 70 (89)
T 1z00_A 21 LTTVKSVNKTDSQTLLTT-FGSLEQL------IAASRED----LALCPGLGPQKARRLFDV 70 (89)
T ss_dssp HTTSSSCCHHHHHHHHHH-TCBHHHH------HHCCHHH----HHTSTTCCHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHH-CCCHHHH------HhCCHHH----HHhCCCCCHHHHHHHHHH
Confidence 567999999999999874 4433222 2223332 344556666665554433
No 34
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=74.37 E-value=7 Score=29.26 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=38.4
Q ss_pred CCCCcccccCccHHHHHhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHHhhccchhhHhHHHHHHH
Q psy6806 16 GEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETCQANAKQSGDCYNCLK 82 (89)
Q Consensus 16 g~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~~~gAn~kqa~dc~~cl~ 82 (89)
.+-++..+||||+..+++|+++|+..-..+. ..+.+.-..- .|.+..|..+-++.++
T Consensus 159 ~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~------~~~~~e~~~l----l~l~~~~~~~i~~~~~ 215 (339)
T 2q0z_X 159 KDSYLKQLPHFTSEHIKRCTDKGVESVFDIM------EMEDEERNAL----LQLTDSQIADVARFCN 215 (339)
T ss_dssp TSCGGGGSTTCCHHHHHHHHHTTCCSHHHHH------HSCHHHHHHH----HCCCHHHHHHHHHHHT
T ss_pred CCCceecCCCCCHHHHHHHHhcCCCCHHHHH------hCCHHHHHHH----HCCCHHHHHHHHHHHH
Confidence 3458899999999999999999987655442 2344443333 3566666666655543
No 35
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=74.22 E-value=1.1 Score=26.67 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.0
Q ss_pred cccccCccHHHHHhHHh
Q psy6806 20 VTELAGVGDVLGKRLES 36 (89)
Q Consensus 20 Vt~l~GIG~~lg~~L~~ 36 (89)
+..+|||||.-.++|-.
T Consensus 6 L~~IpGIG~kr~~~LL~ 22 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMH 22 (63)
T ss_dssp HHTSTTCCHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHH
Confidence 56899999998887654
No 36
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=73.61 E-value=1.4 Score=27.24 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=29.2
Q ss_pred cccccCccHHHHHhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHHhhccchhhHhHHHHH
Q psy6806 20 VTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETCQANAKQSGDCYNC 80 (89)
Q Consensus 20 Vt~l~GIG~~lg~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~~~gAn~kqa~dc~~c 80 (89)
++.+||||+..+++|.+. |.....+ +.-+.+. |...-|...+.+..-...
T Consensus 34 L~~IpgIG~~~A~~Ll~~-fgs~~~l------~~as~~e----L~~i~GIG~~~a~~I~~~ 83 (91)
T 2a1j_B 34 LTTVKSVNKTDSQTLLTT-FGSLEQL------IAASRED----LALCPGLGPQKARRLFDV 83 (91)
T ss_dssp HTTSTTCCHHHHHHHHHH-HSSHHHH------HSCCHHH----HHTSSSCCSHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHH-CCCHHHH------HhCCHHH----HHhCCCCCHHHHHHHHHH
Confidence 567999999999999874 4332222 2333333 344556666665554443
No 37
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=72.84 E-value=1.9 Score=33.00 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=22.8
Q ss_pred ccccCccHHHHHhHHhcCCchhhHhh
Q psy6806 21 TELAGVGDVLGKRLESKGFDKAYVVL 46 (89)
Q Consensus 21 t~l~GIG~~lg~~L~~~Gf~kAy~lL 46 (89)
+.||||||..+++|-++|+..--.|.
T Consensus 99 ~~v~GiG~k~a~~l~~~Gi~tledL~ 124 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWYQQGFRSLEDIR 124 (335)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred hcCCCcCHHHHHHHHHcCCCCHHHHH
Confidence 68999999999999999999876665
No 38
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=69.86 E-value=1.8 Score=26.60 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=27.5
Q ss_pred ccccCccHHHHHhHHhcCCch----hhHhhhhhhhhhc-CHHH
Q psy6806 21 TELAGVGDVLGKRLESKGFDK----AYVVLGQFLLLKQ-NEEL 58 (89)
Q Consensus 21 t~l~GIG~~lg~~L~~~Gf~k----Ay~lLGqfL~l~k-~~~~ 58 (89)
.+.+||++..+.+|.+.||.. ||+=.-..+..+. +++.
T Consensus 9 ~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~ 51 (70)
T 1u9l_A 9 TKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPT 51 (70)
T ss_dssp HHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHH
T ss_pred HHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHH
Confidence 456899999999999999998 6665555554332 4443
No 39
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=69.35 E-value=2.3 Score=32.87 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=25.3
Q ss_pred CCcccccCccHHHHHhHHhcCCchhhHhh
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDKAYVVL 46 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lL 46 (89)
+..+.||||||..+++|-++|+..--.|.
T Consensus 102 ~~l~~I~GvG~kta~~l~~~Gi~tledL~ 130 (360)
T 2ihm_A 102 KLFTQVFGVGVKTANRWYQEGLRTLDELR 130 (360)
T ss_dssp HHHHTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 45678999999999999999999877765
No 40
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=69.09 E-value=3.6 Score=28.65 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=28.8
Q ss_pred CCCCcccccCccHHHHHhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHH
Q psy6806 16 GEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKE 65 (89)
Q Consensus 16 g~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~ 65 (89)
.-+.+..|||||+-.+.-..-=.|+.-- .-.+..++=.+|..||..
T Consensus 102 ~~~~L~~LpGVG~yTAdav~~F~~~e~~----~V~p~D~~l~r~l~wl~~ 147 (161)
T 4e9f_A 102 QWKYPIELHGIGKYGNDSYRIFCVNEWK----QVHPEDHKLNKYHDWLWE 147 (161)
T ss_dssp CCSSGGGSTTCCHHHHHHHHHHTSSCGG----GCCCCSHHHHHHHHHHHH
T ss_pred ChhhhhcCCCchHHHHHHHHHHHCCCCC----CCCCCcHHHHHHHHHHHc
Confidence 4467999999999998875554444211 112333444577888863
No 41
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=68.98 E-value=1.7 Score=27.34 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=17.1
Q ss_pred CCcccccCccHHHHHhHHhc
Q psy6806 18 KPVTELAGVGDVLGKRLESK 37 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~ 37 (89)
..+..|||||+.+++++.+.
T Consensus 40 ~~L~~ipGIG~~~A~~Il~~ 59 (98)
T 2edu_A 40 RDLRSLQRIGPKKAQLIVGW 59 (98)
T ss_dssp HHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHH
Confidence 35788999999999999874
No 42
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=67.46 E-value=1.9 Score=27.35 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.0
Q ss_pred cccccCccHHHHHhHHh
Q psy6806 20 VTELAGVGDVLGKRLES 36 (89)
Q Consensus 20 Vt~l~GIG~~lg~~L~~ 36 (89)
+..||||||.-.++|-.
T Consensus 20 L~~IpGIG~kr~~~LL~ 36 (84)
T 1z00_B 20 LLKMPGVNAKNCRSLMH 36 (84)
T ss_dssp HHTCSSCCHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHH
Confidence 56799999998888765
No 43
>2vh3_A Ranasmurfin, RSF-1; LTQ, bisltq, unknown function; HET: DAH TY2; 1.16A {Polypedates leucomystax} PDB: 2vh3_B*
Probab=65.20 E-value=4.8 Score=27.11 Aligned_cols=43 Identities=28% Similarity=0.613 Sum_probs=36.3
Q ss_pred CcccccCccHHHHHhHHh-cCCch-hhHhhhhhhhhhcCHHHHHH
Q psy6806 19 PVTELAGVGDVLGKRLES-KGFDK-AYVVLGQFLLLKQNEELFVD 61 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~-~Gf~k-Ay~lLGqfL~l~k~~~~F~~ 61 (89)
|-.++||--+-|+..|.. +||.| .|-++--||--+.|.+.+..
T Consensus 7 ppseipgskeclaealqkhqgfkkksyalicaylnykedaenyer 51 (113)
T 2vh3_A 7 PPSEIPGSKECLAEALQKHQGFKKKSYALICAYLNYKEDAENYER 51 (113)
T ss_dssp CCCSCTTCTTHHHHHHHHCHHHHHHHHHHHHHHHTGGGCHHHHHH
T ss_pred CcccCCChHHHHHHHHHHhcchhhhhHHHHHHHhcchhhHHHHHH
Confidence 457899999999999987 89975 89999999999988776654
No 44
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=64.12 E-value=2.3 Score=31.70 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=14.6
Q ss_pred CcccccCccHHHHHhHH
Q psy6806 19 PVTELAGVGDVLGKRLE 35 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~ 35 (89)
.+..||||||.-+.||+
T Consensus 27 ~l~~LPGIG~KsA~RlA 43 (212)
T 3vdp_A 27 ELSKLPGIGPKTAQRLA 43 (212)
T ss_dssp HHHTSTTCCHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHH
Confidence 46789999999999974
No 45
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=63.17 E-value=3 Score=33.43 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.8
Q ss_pred CcccccCccHHHHHhHHhcCCchhhHh
Q psy6806 19 PVTELAGVGDVLGKRLESKGFDKAYVV 45 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~Gf~kAy~l 45 (89)
++..|||||+..+++|.++||..-..+
T Consensus 658 ~L~qlp~i~~~rar~L~~~g~~s~~~l 684 (715)
T 2va8_A 658 ELVQISGVGRKRARLLYNNGIKELGDV 684 (715)
T ss_dssp HHHTSTTCCHHHHHHHHHTTCCSHHHH
T ss_pred chhhCCCCCHHHHHHHHHcCCCCHHHH
Confidence 467899999999999999999877665
No 46
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=62.78 E-value=3.7 Score=32.07 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=26.2
Q ss_pred CCCcccccCccHHHHHhHHhcCCchhhHhh
Q psy6806 17 EKPVTELAGVGDVLGKRLESKGFDKAYVVL 46 (89)
Q Consensus 17 ~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lL 46 (89)
=+..+.||||||..+++|-++|+..--.|.
T Consensus 120 l~~l~~I~GvGpk~a~~ly~~Gi~tledL~ 149 (381)
T 1jms_A 120 FKLFTSVFGVGLKTAEKWFRMGFRTLSKIQ 149 (381)
T ss_dssp HHHHHTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHccCCCCHHHHHHHHHcCCCcHHHHH
Confidence 345678999999999999999999988777
No 47
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=62.62 E-value=2.7 Score=32.25 Aligned_cols=18 Identities=11% Similarity=0.458 Sum_probs=16.1
Q ss_pred CcccccCccHHHHHhHHh
Q psy6806 19 PVTELAGVGDVLGKRLES 36 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~ 36 (89)
.++.|||||+.++.+..|
T Consensus 58 ~l~~lpGIG~~~A~kI~E 75 (335)
T 2bcq_A 58 EACSIPGIGKRMAEKIIE 75 (335)
T ss_dssp HHHTSTTCCHHHHHHHHH
T ss_pred HHhcCCCccHHHHHHHHH
Confidence 478999999999999887
No 48
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=61.92 E-value=8.2 Score=27.51 Aligned_cols=48 Identities=10% Similarity=0.221 Sum_probs=30.5
Q ss_pred CCcccccCccHHHHHhHHhcCCch--------hhHhhhhhhhhhcCHHHHHHHHHH
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDK--------AYVVLGQFLLLKQNEELFVDWMKE 65 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~k--------Ay~lLGqfL~l~k~~~~F~~WLk~ 65 (89)
+.++.||||||..+.-.---+|++ +..++.++-+-.++.+..+.++.+
T Consensus 121 ~~L~~lpGIG~kTA~~il~~a~~~~~~~vD~~v~Ri~~rlg~~~~~~~~~~~~l~~ 176 (218)
T 1pu6_A 121 EWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEIEDYDELQHFFEK 176 (218)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCCSCCCCCHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred HHHHcCCCcCHHHHHHHHHHHCCCCccccCHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 457899999999998887766766 222333321224566666666654
No 49
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=61.39 E-value=4.5 Score=32.57 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.5
Q ss_pred CCcccccCccHHHHHhHHhcCCchhhHhh
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDKAYVVL 46 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lL 46 (89)
=++..|||||+..+++|.+.||..-+.+.
T Consensus 646 ~~L~qlp~v~~~rar~L~~~G~~s~~dl~ 674 (720)
T 2zj8_A 646 IPLMQLPLVGRRRARALYNSGFRSIEDIS 674 (720)
T ss_dssp GGGTTSTTCCHHHHHHHHTTTCCSHHHHH
T ss_pred hhhhhCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 36789999999999999999999887763
No 50
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=60.44 E-value=3.8 Score=31.69 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=19.0
Q ss_pred CCCCCC-CcccccCccHHHHHhHHh
Q psy6806 13 EPMGEK-PVTELAGVGDVLGKRLES 36 (89)
Q Consensus 13 ePMg~K-~Vt~l~GIG~~lg~~L~~ 36 (89)
.|+... .++.|||||+.++.+..|
T Consensus 55 ~~i~~~~~l~~lpGIG~~~A~kI~E 79 (360)
T 2ihm_A 55 CPVASLSQLHGLPYFGEHSTRVIQE 79 (360)
T ss_dssp SCCCSGGGGTTCTTCCHHHHHHHHH
T ss_pred cccCCHHHHhcCCCCCHHHHHHHHH
Confidence 345443 589999999999999877
No 51
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=60.05 E-value=3.1 Score=31.77 Aligned_cols=24 Identities=17% Similarity=0.464 Sum_probs=18.4
Q ss_pred CCCCCC-CcccccCccHHHHHhHHh
Q psy6806 13 EPMGEK-PVTELAGVGDVLGKRLES 36 (89)
Q Consensus 13 ePMg~K-~Vt~l~GIG~~lg~~L~~ 36 (89)
+|+... .++.|||||+.++.+..|
T Consensus 51 ~~i~~~~~l~~LpGIG~~~A~kI~E 75 (335)
T 2fmp_A 51 HKIKSGAEAKKLPGVGTKIAEKIDE 75 (335)
T ss_dssp SCCCCHHHHHTSTTCCHHHHHHHHH
T ss_pred ccccCHHHHhcCCCCcHHHHHHHHH
Confidence 344432 488999999999998877
No 52
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=60.01 E-value=4 Score=30.36 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.2
Q ss_pred CcccccCccHHHHHhHHh
Q psy6806 19 PVTELAGVGDVLGKRLES 36 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~ 36 (89)
.+..||||||..+.+..+
T Consensus 133 eL~~LpGIG~k~A~~IIe 150 (205)
T 2i5h_A 133 QLELLPGVGKKMMWAIIE 150 (205)
T ss_dssp GGGGSTTCCHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHH
Confidence 567899999999988765
No 53
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=58.78 E-value=2 Score=32.00 Aligned_cols=29 Identities=21% Similarity=0.118 Sum_probs=0.0
Q ss_pred Cccccc--CccHHHHHhHHhcCCchhhHhhh
Q psy6806 19 PVTELA--GVGDVLGKRLESKGFDKAYVVLG 47 (89)
Q Consensus 19 ~Vt~l~--GIG~~lg~~L~~~Gf~kAy~lLG 47 (89)
++..|| ||++...++|.+.||..+-.++-
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~ 56 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQM 56 (343)
T ss_dssp -------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 688898 99999999999999999877763
No 54
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=58.41 E-value=4.3 Score=31.69 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=18.8
Q ss_pred CCCCCC-CcccccCccHHHHHhHHh
Q psy6806 13 EPMGEK-PVTELAGVGDVLGKRLES 36 (89)
Q Consensus 13 ePMg~K-~Vt~l~GIG~~lg~~L~~ 36 (89)
.|+..- .++.|||||+.++.+.+|
T Consensus 74 ~~i~~~~~l~~lpGIG~~ia~kI~E 98 (381)
T 1jms_A 74 FPITSMKDTEGIPCLGDKVKSIIEG 98 (381)
T ss_dssp SCCCSGGGGTTCSSCCHHHHHHHHH
T ss_pred ccccCHHHHhcCCCCcHHHHHHHHH
Confidence 344443 489999999999999877
No 55
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=58.01 E-value=3.4 Score=31.14 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=14.5
Q ss_pred CcccccCccHHHHHhHH
Q psy6806 19 PVTELAGVGDVLGKRLE 35 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~ 35 (89)
.+..||||||.-+.||+
T Consensus 13 ~l~~LPGIG~KSA~RlA 29 (228)
T 1vdd_A 13 ELSRLPGIGPKSAQRLA 29 (228)
T ss_dssp HHHTSTTCCHHHHHHHH
T ss_pred HHhHCCCCCHHHHHHHH
Confidence 35679999999999984
No 56
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=57.58 E-value=5.5 Score=32.25 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=24.6
Q ss_pred CCCCcccccCccHHHHHhHHhcCCchhhHhh
Q psy6806 16 GEKPVTELAGVGDVLGKRLESKGFDKAYVVL 46 (89)
Q Consensus 16 g~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lL 46 (89)
+-..+..|+||||..+.+|-+.||...-.|.
T Consensus 95 ~~~~L~~v~GVGpk~A~~i~~~G~~s~edL~ 125 (578)
T 2w9m_A 95 GLLDLLGVRGLGPKKIRSLWLAGIDSLERLR 125 (578)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHcCCCCHHHHH
Confidence 3345688999999999999888998765554
No 57
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=57.57 E-value=4.6 Score=31.12 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=28.6
Q ss_pred CCCCCcccccCccHHHHHhHHhcC----CchhhHhhhhhhh
Q psy6806 15 MGEKPVTELAGVGDVLGKRLESKG----FDKAYVVLGQFLL 51 (89)
Q Consensus 15 Mg~K~Vt~l~GIG~~lg~~L~~~G----f~kAy~lLGqfL~ 51 (89)
||-.-+--|||||+..|.+|-.+- +++.|.=++++|-
T Consensus 222 ~G~D~~pgv~GiG~ktA~kli~~~~~~~l~~il~~~~~~l~ 262 (352)
T 3qe9_Y 222 SGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLK 262 (352)
T ss_dssp HCCSSSCCCTTCCHHHHHHHHHHCCCSCHHHHHTTHHHHHT
T ss_pred cCCCCCCCCCCeeHHHHHHHHHHhCCCCHHHHHHHHHhhhc
Confidence 344456679999999999998862 6788888888864
No 58
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=56.89 E-value=1.6 Score=26.70 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=35.8
Q ss_pred CCCCCCCc------ccccCccHHHHHhHHhcC--CchhhHhhhhhhhhhcCHHHHHHHHHH
Q psy6806 13 EPMGEKPV------TELAGVGDVLGKRLESKG--FDKAYVVLGQFLLLKQNEELFVDWMKE 65 (89)
Q Consensus 13 ePMg~K~V------t~l~GIG~~lg~~L~~~G--f~kAy~lLGqfL~l~k~~~~F~~WLk~ 65 (89)
-|+-+|.+ .+.=|||.....+|...| ...+..+=.++|+ +.+.|.+||.+
T Consensus 9 ~p~~~K~~LTi~EaAeylgIg~~~l~~L~~~~~~~~~~~~iG~~~lI---~r~~fe~~l~~ 66 (70)
T 1y6u_A 9 IPIWERYTLTIEEASKYFRIGENKLRRLAEENKNANWLIMNGNRIQI---KRKQFEKIIDT 66 (70)
T ss_dssp CCTTTSSEEEHHHHHHHTCSCHHHHHHHHHHCTTCSSEEEETTEEEE---ESHHHHHTSTT
T ss_pred ccccccceeCHHHHHHHHCcCHHHHHHHHHcCCCCCcEEEeCCEEEE---EHHHHHHHHHH
Confidence 46666654 445699999999999987 6666555455555 45789999854
No 59
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=56.50 E-value=2.3 Score=31.55 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHhhhhCCCCCCCcccccCccHHHHHhHHhc
Q psy6806 7 HQNFVSEPMGEKPVTELAGVGDVLGKRLESK 37 (89)
Q Consensus 7 hr~Fv~ePMg~K~Vt~l~GIG~~lg~~L~~~ 37 (89)
||.--+..+-.-.++.+|||||..+++|.+.
T Consensus 162 hr~~r~k~~~~s~L~~IpGIG~k~ak~Ll~~ 192 (226)
T 3c65_A 162 HRKTRQKTMFHSVLDDIPGVGEKRKKALLNY 192 (226)
T ss_dssp -------------------------------
T ss_pred cccccccccccccccccCCCCHHHHHHHHHH
Confidence 3444445555567889999999999999874
No 60
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=55.77 E-value=3.7 Score=34.85 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=17.6
Q ss_pred CCCCcccccCccHHHHHhHHh
Q psy6806 16 GEKPVTELAGVGDVLGKRLES 36 (89)
Q Consensus 16 g~K~Vt~l~GIG~~lg~~L~~ 36 (89)
+..-|+.+|||||+.+++|=+
T Consensus 466 qeamLtAIaGIGp~tAeRLLE 486 (685)
T 4gfj_A 466 GYASLISIRGIDRERAERLLK 486 (685)
T ss_dssp THHHHHTSTTCCHHHHHHHHH
T ss_pred ceeeeeccCCCCHHHHHHHHH
Confidence 356789999999999999765
No 61
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=55.26 E-value=3.8 Score=29.94 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=15.8
Q ss_pred CcccccCccHHHHHhHHh
Q psy6806 19 PVTELAGVGDVLGKRLES 36 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~ 36 (89)
.++++||||+..+.|+..
T Consensus 124 ~L~~vpGIG~KtA~rIi~ 141 (212)
T 2ztd_A 124 ALTRVPGIGKRGAERMVL 141 (212)
T ss_dssp HHHTSTTCCHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHH
Confidence 468999999999999875
No 62
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=54.97 E-value=4.9 Score=32.26 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=24.7
Q ss_pred CcccccCccHHHHHhHHhcCCchhhHhh
Q psy6806 19 PVTELAGVGDVLGKRLESKGFDKAYVVL 46 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~Gf~kAy~lL 46 (89)
++..|||||+..+++|.++||..-+.+.
T Consensus 633 ~L~qlp~v~~~~ar~l~~~g~~s~~~l~ 660 (702)
T 2p6r_A 633 ELVRIRHIGRVRARKLYNAGIRNAEDIV 660 (702)
T ss_dssp HHHTSTTCCHHHHHHHHTTTCCSHHHHH
T ss_pred hhhcCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 5678999999999999999999877764
No 63
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=52.66 E-value=12 Score=29.03 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=26.1
Q ss_pred CCCCcccccC--ccHHHHHhHHhcCCchhhHhh
Q psy6806 16 GEKPVTELAG--VGDVLGKRLESKGFDKAYVVL 46 (89)
Q Consensus 16 g~K~Vt~l~G--IG~~lg~~L~~~Gf~kAy~lL 46 (89)
+.-++..|++ |++...++|.+.||..+.-|+
T Consensus 79 ~~~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~ 111 (400)
T 3lda_A 79 SFVPIEKLQVNGITMADVKKLRESGLHTAEAVA 111 (400)
T ss_dssp CSCBGGGGCCTTCCHHHHHHHHHTTCCBHHHHH
T ss_pred CccCHHHHHhCCCCHHHHHHHHHcCCCcHHHHH
Confidence 4457888886 889999999999999987764
No 64
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=52.49 E-value=9.9 Score=26.26 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=35.4
Q ss_pred cccccCccHHHHHhHHhcCCc-----hhhHhhhhhhhhhcCHHHHHHHHHHh
Q psy6806 20 VTELAGVGDVLGKRLESKGFD-----KAYVVLGQFLLLKQNEELFVDWMKET 66 (89)
Q Consensus 20 Vt~l~GIG~~lg~~L~~~Gf~-----kAy~lLGqfL~l~k~~~~F~~WLk~~ 66 (89)
+.+.+.|=++|-+||.+.|-. ||.+|| .||+.+..+. |.+|.++.
T Consensus 54 ~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~ll-eyLl~nGse~-vv~~~r~~ 103 (148)
T 1inz_A 54 VVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLM-EYLIKTGSER-VSQQCKEN 103 (148)
T ss_dssp SHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHH-HHHHHTTCHH-HHHHHHHT
T ss_pred HhhHHHHHHHHHHHHccCCcchhHhhHHHHHH-HHHHHhCCHH-HHHHHHHh
Confidence 456788889999999998755 787777 6888886665 88888764
No 65
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=52.09 E-value=5.8 Score=28.33 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.3
Q ss_pred CcccccCccHHHHHhHHh
Q psy6806 19 PVTELAGVGDVLGKRLES 36 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~ 36 (89)
.++.+||||+..+.++..
T Consensus 108 ~L~~vpGIG~K~A~rI~~ 125 (191)
T 1ixr_A 108 LLTSASGVGRRLAERIAL 125 (191)
T ss_dssp HHTTSTTCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHH
Confidence 578899999999998865
No 66
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=51.56 E-value=11 Score=26.96 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=17.1
Q ss_pred CCcccccCccHHHHHhHHhcCCch
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDK 41 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~k 41 (89)
+.++.|||||+..+.-..--+|++
T Consensus 113 ~~L~~lpGIG~~TA~~il~~a~g~ 136 (226)
T 1orn_A 113 DELMKLPGVGRKTANVVVSVAFGV 136 (226)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHCCCccHHHHHHHHHHHCCC
Confidence 457789999999877665544433
No 67
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=50.76 E-value=5 Score=28.87 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=15.4
Q ss_pred CcccccCccHHHHHhHHh
Q psy6806 19 PVTELAGVGDVLGKRLES 36 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~ 36 (89)
.++.+||||+..+.|+..
T Consensus 109 ~L~~vpGIG~K~A~rI~~ 126 (203)
T 1cuk_A 109 ALVKLPGIGKKTAERLIV 126 (203)
T ss_dssp HHHTSTTCCHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHH
Confidence 568899999999999865
No 68
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=50.62 E-value=6 Score=28.17 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=18.6
Q ss_pred CCcccccCccHHHHHhHHhcCCch
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDK 41 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~k 41 (89)
+.+..|||||+..+.-..--+|++
T Consensus 115 ~~L~~lpGIG~~TA~~il~~~~~~ 138 (221)
T 1kea_A 115 KAILDLPGVGKYTCAAVMCLAFGK 138 (221)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCcHHHHHHHHHHhcCC
Confidence 346789999999988777666655
No 69
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=50.16 E-value=2.7 Score=24.46 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=37.9
Q ss_pred CCcccccCccHHHHHhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHHhhccc
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETCQAN 70 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~~~gAn 70 (89)
+.|.++=||++....++...|+ -.+...|.==...-+.+....||.+...+.
T Consensus 6 ~e~a~~LgvS~~Tl~rw~~~G~-P~~~~~g~~~~~~y~~~dv~~wl~~~~~~~ 57 (68)
T 1j9i_A 6 KQLADIFGASIRTIQNWQEQGM-PVLRGGGKGNEVLYDSAAVIKWYAERDAEI 57 (68)
T ss_dssp HHHHHHTTCCHHHHHHHTTTTC-CCSSCCCSSSCCEEEHHHHHHHHTTTGGGG
T ss_pred HHHHHHHCcCHHHHHHHHHCCC-CeEeeCCCcceEEECHHHHHHHHHHCcccc
Confidence 4577788999999999999999 777777710001237889999998664433
No 70
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Probab=49.15 E-value=7.5 Score=29.83 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=38.2
Q ss_pred hhCCCCCCCcccccCccHH-----------HHHhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHHhhcc
Q psy6806 11 VSEPMGEKPVTELAGVGDV-----------LGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETCQA 69 (89)
Q Consensus 11 v~ePMg~K~Vt~l~GIG~~-----------lg~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~~~gA 69 (89)
|++.+|+..+.=.||||+. ......+.|-| |.|.|+.+.-..|...-.+=|++....
T Consensus 185 IR~~~~~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd--~iVvGr~I~~a~dp~~a~~~i~~~i~~ 252 (303)
T 3ru6_A 185 IKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMARENLSD--YIVVGRPIYKNENPRAVCEKILNKIHR 252 (303)
T ss_dssp HHHHSCTTSEEEECCCCTTC--------CCSHHHHHHTTCS--EEEECHHHHTSSCHHHHHHHHHHHHC-
T ss_pred HHHhCCCccEEECCCcCcccCCcccccccCCHHHHHHcCCC--EEEEChHHhCCCCHHHHHHHHHHHHHh
Confidence 3444666566778999986 23344567877 789999988777876655555555443
No 71
>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}
Probab=48.50 E-value=19 Score=26.18 Aligned_cols=56 Identities=11% Similarity=0.165 Sum_probs=35.2
Q ss_pred hhhhCCCCCCCcccccCccHHHHH-----------hHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHHh
Q psy6806 9 NFVSEPMGEKPVTELAGVGDVLGK-----------RLESKGFDKAYVVLGQFLLLKQNEELFVDWMKET 66 (89)
Q Consensus 9 ~Fv~ePMg~K~Vt~l~GIG~~lg~-----------~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~~ 66 (89)
.-|++..|+.-+.=.||||+.-+. ...+.|-| |.|.|+.+.-..|...-.+-+++.
T Consensus 169 ~~ir~~~~~~fl~vtPGIr~~g~~~~dQ~rv~t~~~~~~aGad--~lVvGr~I~~a~dp~~a~~~i~~~ 235 (239)
T 3tr2_A 169 ALLRKQFDRNFLLVTPGIRLETDEKGDQKRVMTPRAAIQAGSD--YLVIGRPITQSTDPLKALEAIDKD 235 (239)
T ss_dssp HHHHTTCCTTSEEEECCBC----------CCBCHHHHHHHTCS--EEEECHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCcEEECCCcCCCCCCcCcccccCCHHHHHHcCCC--EEEEChHHhCCCCHHHHHHHHHHH
Confidence 447777887666656999987432 24457777 789999977777766555555443
No 72
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=46.99 E-value=7.5 Score=26.69 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=16.3
Q ss_pred hhHhhhh---hhhhhcCHHHHHHHHH
Q psy6806 42 AYVVLGQ---FLLLKQNEELFVDWMK 64 (89)
Q Consensus 42 Ay~lLGq---fL~l~k~~~~F~~WLk 64 (89)
|..+||+ |=++..|+|-|..|++
T Consensus 96 A~~~lG~~~~Y~ll~nNCEHFvt~cr 121 (137)
T 4dpz_X 96 AEELVGQELPYSLTSDNCEHFVNHLR 121 (137)
T ss_dssp HHHHTTCEEC-----CHHHHHHHHHH
T ss_pred HHHHcCCCcccCcCccChHHHHHHHh
Confidence 7778886 8889999999999998
No 73
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=46.26 E-value=8.3 Score=26.48 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=35.1
Q ss_pred cccccCccHHHHHhHHhcCCc-----hhhHhhhhhhhhhcCHHHHHHHHHHh
Q psy6806 20 VTELAGVGDVLGKRLESKGFD-----KAYVVLGQFLLLKQNEELFVDWMKET 66 (89)
Q Consensus 20 Vt~l~GIG~~lg~~L~~~Gf~-----kAy~lLGqfL~l~k~~~~F~~WLk~~ 66 (89)
+.+.+.|=++|-+||.+.|-. ||.+|| .||+.+..+. |.+|.++.
T Consensus 36 ~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~ll-eyLl~nGse~-vv~~~~~~ 85 (144)
T 1eyh_A 36 VVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLM-EYLIKTGSER-VSQQCKEN 85 (144)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHH-HHHHHHSCHH-HHHHHHHT
T ss_pred HhhHHHHHHHHHHHHccCCcchHHHhHHHHHH-HHHHHhCCHH-HHHHHHHh
Confidence 457788899999999987644 677776 6888886665 88888764
No 74
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=45.74 E-value=7.6 Score=27.11 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=33.1
Q ss_pred cccccCccHHHHHhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHHhhccchhhHhHHHHHH
Q psy6806 20 VTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETCQANAKQSGDCYNCL 81 (89)
Q Consensus 20 Vt~l~GIG~~lg~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~~~gAn~kqa~dc~~cl 81 (89)
++.+||||+..+++|.+. |.....+ +..+.+. |...-|...+.|..-++-+
T Consensus 164 L~~i~gVg~~~a~~Ll~~-fgs~~~l------~~a~~e~----L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILER-FGSLERF------FTASKAE----ISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp HHTSTTCCHHHHHHHHHH-HSSHHHH------TTCCHHH----HHHSTTCCHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHH-cCCHHHH------HhCCHHH----HhhCCCCCHHHHHHHHHHH
Confidence 457999999999999885 4332222 2334443 5667778888777655433
No 75
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=43.25 E-value=7.4 Score=26.87 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=21.8
Q ss_pred hhhHhhhh---hhhhhcCHHHHHHHHHHhhc-cchhhHhH
Q psy6806 41 KAYVVLGQ---FLLLKQNEELFVDWMKETCQ-ANAKQSGD 76 (89)
Q Consensus 41 kAy~lLGq---fL~l~k~~~~F~~WLk~~~g-An~kqa~d 76 (89)
+|...||+ |=++..|||-|..|++ .| +.+.|..|
T Consensus 95 rA~~~lG~e~~Y~ll~nNCEHFvt~cr--~G~~~S~Qv~~ 132 (140)
T 4dot_A 95 RAEELVGQEVLYKLTSENCEHFVNELR--YGVARSDQVRD 132 (140)
T ss_dssp HHHHTTTCBCSSCCCHHHHHHHHHHHH--HCCC-------
T ss_pred HHHHHcCCcccccccccChHHHHHHHh--cCCcccchhhh
Confidence 37778884 6778889999999998 55 33444443
No 76
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=42.44 E-value=10 Score=28.93 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=16.6
Q ss_pred CCCCCcccccCccHHHHHhHHh
Q psy6806 15 MGEKPVTELAGVGDVLGKRLES 36 (89)
Q Consensus 15 Mg~K~Vt~l~GIG~~lg~~L~~ 36 (89)
||...+.-||||||..|.+|-.
T Consensus 229 ~G~D~~~gipGiG~KtA~kll~ 250 (341)
T 3q8k_A 229 LGSDYCESIRGIGPKRAVDLIQ 250 (341)
T ss_dssp HCCSSSCCCTTCCHHHHHHHHH
T ss_pred cCCCCCCCCCCccHHHHHHHHH
Confidence 5622566799999988888766
No 77
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=42.05 E-value=7.8 Score=26.27 Aligned_cols=15 Identities=47% Similarity=1.092 Sum_probs=12.0
Q ss_pred hHhHHHHHHHHHHHh
Q psy6806 73 QSGDCYNCLKDWCGE 87 (89)
Q Consensus 73 qa~dc~~cl~eWc~~ 87 (89)
-|+-|-|||..|-.+
T Consensus 40 LAGFCRNCLskWy~~ 54 (105)
T 2o35_A 40 LAGFCRNCLSNWYRE 54 (105)
T ss_dssp HHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 366799999999753
No 78
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=41.99 E-value=10 Score=28.02 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=16.3
Q ss_pred CcccccCccHHHHHhHHhc
Q psy6806 19 PVTELAGVGDVLGKRLESK 37 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~ 37 (89)
.+..+|||||..+++|.+.
T Consensus 169 ~LdgIpGIG~k~ak~Ll~~ 187 (220)
T 2nrt_A 169 VLDNVPGIGPIRKKKLIEH 187 (220)
T ss_dssp HHTTSTTCCHHHHHHHHHH
T ss_pred cccCCCCcCHHHHHHHHHH
Confidence 4578999999999999873
No 79
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=41.54 E-value=14 Score=34.07 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=26.1
Q ss_pred CCcccccCccHHHHHhHHhcCCchhhHhh
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDKAYVVL 46 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lL 46 (89)
-++..|||||+..+++|.++||..-+.+.
T Consensus 1557 ~~L~qip~i~~~~ar~l~~~gi~t~~dl~ 1585 (1724)
T 4f92_B 1557 SYLKQLPHFTSEHIKRCTDKGVESVFDIM 1585 (1724)
T ss_dssp CGGGGSTTCCHHHHHHHHHHTCCSHHHHH
T ss_pred cCEecCCCCCHHHHHHHHHCCCCCHHHHH
Confidence 36889999999999999999999988764
No 80
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=41.33 E-value=23 Score=25.16 Aligned_cols=37 Identities=14% Similarity=0.306 Sum_probs=27.1
Q ss_pred HHHHhHHhcCCchhhH-hhhhhhhhhcCHHHHHHHHHHh
Q psy6806 29 VLGKRLESKGFDKAYV-VLGQFLLLKQNEELFVDWMKET 66 (89)
Q Consensus 29 ~lg~~L~~~Gf~kAy~-lLGqfL~l~k~~~~F~~WLk~~ 66 (89)
.+-.-|++.|++.... .|-.| +..|.......||+..
T Consensus 161 ~l~~YLeeRGI~~~la~fl~~y-~~~KE~~EYi~WL~~l 198 (203)
T 1yqf_A 161 CVMTYLEKRGVDEKLGEFVVLY-SFWAEQQDYEAWLTTM 198 (203)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4566788899998542 34555 4667899999999965
No 81
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=41.22 E-value=8.2 Score=26.13 Aligned_cols=14 Identities=43% Similarity=0.897 Sum_probs=11.6
Q ss_pred hHhHHHHHHHHHHH
Q psy6806 73 QSGDCYNCLKDWCG 86 (89)
Q Consensus 73 qa~dc~~cl~eWc~ 86 (89)
-|+-|-|||..|-.
T Consensus 39 LAGFCRNCLskWy~ 52 (104)
T 3fyb_A 39 QADFCRNCLAKWLM 52 (104)
T ss_dssp HHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36679999999975
No 82
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=41.04 E-value=22 Score=25.29 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=26.3
Q ss_pred HHHHhHHhcCCchhhH-hhhhhhhhhcCHHHHHHHHHHhh
Q psy6806 29 VLGKRLESKGFDKAYV-VLGQFLLLKQNEELFVDWMKETC 67 (89)
Q Consensus 29 ~lg~~L~~~Gf~kAy~-lLGqfL~l~k~~~~F~~WLk~~~ 67 (89)
.+-.-|+++|++...- .|-.| +..|.......||+..-
T Consensus 165 ~l~~yLeeRGI~~~la~fl~~y-~~~KE~~eYi~WL~~lk 203 (209)
T 1p32_A 165 HLMDFLADRGVDNTFADELVEL-STALEHQEYITFLEDLK 203 (209)
T ss_dssp HHHHHHHTTTCSHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3455677899998543 23333 56778899999999753
No 83
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=40.48 E-value=11 Score=27.18 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=18.9
Q ss_pred CcccccCccHHHHHhHHhcCCchh
Q psy6806 19 PVTELAGVGDVLGKRLESKGFDKA 42 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~Gf~kA 42 (89)
.++.||||||..+.-..--+|.+.
T Consensus 139 ~L~~lpGIG~kTA~~ill~alg~p 162 (233)
T 2h56_A 139 KLTAIKGIGQWTAEMFMMFSLGRL 162 (233)
T ss_dssp HHHTSTTCCHHHHHHHHHHTTCCS
T ss_pred HHHhCCCcCHHHHHHHHHHhCCCC
Confidence 367899999999988777666653
No 84
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=39.13 E-value=7 Score=22.78 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=17.6
Q ss_pred cHHHHHhHHhcCCchhhHhhhhh
Q psy6806 27 GDVLGKRLESKGFDKAYVVLGQF 49 (89)
Q Consensus 27 G~~lg~~L~~~Gf~kAy~lLGqf 49 (89)
....+..|.+.||++.|++ |=|
T Consensus 54 s~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 54 SGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp HHHHHHHHHHTTCSSEEEE-EET
T ss_pred HHHHHHHHHHcCCCCEEec-cCH
Confidence 3567889999999999887 754
No 85
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.03 E-value=42 Score=18.28 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=29.5
Q ss_pred cCccHHHHHhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHH
Q psy6806 24 AGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKE 65 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~ 65 (89)
|.+-+.....|.+-||+..-....=.- .+ |.+.-.+||.+
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~-~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 6 SGVNQQQLQQLMDMGFTREHAMEALLN-TS-TMEQATEYLLT 45 (47)
T ss_dssp CSSCHHHHHHHHHHHCCHHHHHHHHHH-SC-SHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHH-cC-CHHHHHHHHHc
Confidence 567788999999999999555543332 24 88888899863
No 86
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=38.43 E-value=6.5 Score=27.68 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=16.5
Q ss_pred CCcccccCccHHHHHhHHhcCCc
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFD 40 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~ 40 (89)
+.++.|||||+..+.-..--+|+
T Consensus 109 ~~L~~l~GIG~~tA~~il~~~~~ 131 (211)
T 2abk_A 109 AALEALPGVGRKTANVVLNTAFG 131 (211)
T ss_dssp HHHHHSTTCCHHHHHHHHHHHHC
T ss_pred HHHHhCCCCChHHHHHHHHHHCC
Confidence 44778999999988766554433
No 87
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=38.38 E-value=10 Score=26.71 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=16.8
Q ss_pred CcccccCccHHHHHhHHhc-CC
Q psy6806 19 PVTELAGVGDVLGKRLESK-GF 39 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~-Gf 39 (89)
.++.||||||..+.-.--. ||
T Consensus 118 ~L~~lpGIG~kTA~~il~~~~~ 139 (207)
T 3fhg_A 118 RLLNIKGIGMQEASHFLRNVGY 139 (207)
T ss_dssp HHTTSTTCCHHHHHHHHHHTTC
T ss_pred HHHcCCCcCHHHHHHHHHHhCC
Confidence 4679999999998876663 77
No 88
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=38.37 E-value=13 Score=26.87 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=19.4
Q ss_pred CcccccCccHHHHHhHHhcCCchh
Q psy6806 19 PVTELAGVGDVLGKRLESKGFDKA 42 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~Gf~kA 42 (89)
.++.||||||..+.-..--+|.+.
T Consensus 151 ~L~~l~GIG~~TA~~ill~alg~p 174 (232)
T 4b21_A 151 SLSKIKGVKRWTIEMYSIFTLGRL 174 (232)
T ss_dssp HHTTSTTCCHHHHHHHHHHTSCCS
T ss_pred HHHhCCCcCHHHHHHHHHHhCCCC
Confidence 478899999999988777666653
No 89
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=38.32 E-value=15 Score=27.72 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=17.8
Q ss_pred CCcccccCccHHHHHhHHhcCCch
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDK 41 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~k 41 (89)
+.++.|||||+..+.-..--+|++
T Consensus 118 ~~L~~l~GIG~~tA~~il~~~~~~ 141 (369)
T 3fsp_A 118 DEFSRLKGVGPYTVGAVLSLAYGV 141 (369)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHhcCCCcCHHHHHHHHHHHCCC
Confidence 457789999999888766654443
No 90
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=38.18 E-value=9.9 Score=24.54 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=20.4
Q ss_pred hhhHhhh---hhhhhhcCHHHHHHHHH
Q psy6806 41 KAYVVLG---QFLLLKQNEELFVDWMK 64 (89)
Q Consensus 41 kAy~lLG---qfL~l~k~~~~F~~WLk 64 (89)
+|..+|| .|=++..|+|-|--|++
T Consensus 95 rA~~~lg~~~~Y~l~~nNCEHFa~~cr 121 (125)
T 2lkt_A 95 SAKEMVGQKMKYSIVSRNCEHFVTQLR 121 (125)
T ss_dssp HHHHHTTCEECSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCcCCCccCHHHHHhhhh
Confidence 4788888 37788889999999997
No 91
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=38.08 E-value=7 Score=27.81 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=17.1
Q ss_pred CCcccccCccHHHHHhHHhcCCch
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDK 41 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~k 41 (89)
+.++.|||||+..+.-..--+|++
T Consensus 109 ~~L~~lpGIG~~TA~~il~~a~~~ 132 (225)
T 1kg2_A 109 EEVAALPGVGRSTAGAILSLSLGK 132 (225)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHhcCCCCcHHHHHHHHHHhCCC
Confidence 346789999999887766544443
No 92
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=36.73 E-value=7.7 Score=24.76 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=20.5
Q ss_pred cCc-cHHHHHhHHhcCCchhhHhhhhh
Q psy6806 24 AGV-GDVLGKRLESKGFDKAYVVLGQF 49 (89)
Q Consensus 24 ~GI-G~~lg~~L~~~Gf~kAy~lLGqf 49 (89)
.|. +...+..|.+.||+++|+|.|=|
T Consensus 83 sG~RS~~aa~~L~~~G~~~v~~l~GG~ 109 (134)
T 1vee_A 83 FDGNSELVAELVALNGFKSAYAIKDGA 109 (134)
T ss_dssp SSTTHHHHHHHHHHHTCSEEEECTTTT
T ss_pred CCCcHHHHHHHHHHcCCcceEEecCCc
Confidence 344 34567789999999999998877
No 93
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=36.05 E-value=19 Score=29.13 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=37.2
Q ss_pred hhCCCCCCCcccccCccHHHHHhHHh---cCCchhhHhhhhhhhhhcCHHHHHHHHHHhhccchhhHhHHHH
Q psy6806 11 VSEPMGEKPVTELAGVGDVLGKRLES---KGFDKAYVVLGQFLLLKQNEELFVDWMKETCQANAKQSGDCYN 79 (89)
Q Consensus 11 v~ePMg~K~Vt~l~GIG~~lg~~L~~---~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~~~gAn~kqa~dc~~ 79 (89)
|++..-+. +..+||||+.+..+..+ .| +..++| |+ .....+.|.. |....|.-.|-|..-|+
T Consensus 51 i~~~~~~~-~~~lp~iG~~~~~~i~~~v~~g---~~~~~~-~~-~~~~~~~~~~-L~~v~GVGpk~A~~i~~ 115 (578)
T 2w9m_A 51 TPELLARE-FTGIPKVGKGIAAELSDFARSG---TFAPLE-AA-AGQLPPGLLD-LLGVRGLGPKKIRSLWL 115 (578)
T ss_dssp ---------CCSSTTCCHHHHHHHHHHHHHS---SCHHHH-HH-HHHSCHHHHH-HTTSTTCCHHHHHHHHH
T ss_pred hhhhhHhh-hhhcCCCChhHHHHHHHHHcCC---hHHHHH-HH-hhhhHHHHHH-HhCCCCcCHHHHHHHHH
Confidence 44444443 89999999998887665 33 223444 33 2334667777 56788888888887665
No 94
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=35.65 E-value=16 Score=26.31 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=19.3
Q ss_pred CcccccCccHHHHHhHHhcCCchh
Q psy6806 19 PVTELAGVGDVLGKRLESKGFDKA 42 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~Gf~kA 42 (89)
.++.|||||+..+.-.---+|.+.
T Consensus 140 ~L~~l~GIG~~TA~~ill~~lg~p 163 (228)
T 3s6i_A 140 RLTQIKGIGRWTVEMLLIFSLNRD 163 (228)
T ss_dssp HHTTSTTCCHHHHHHHHHHTSCCS
T ss_pred HHHhCCCcCHHHHHHHHHHhCCCC
Confidence 578899999999988777666654
No 95
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=34.91 E-value=14 Score=25.37 Aligned_cols=17 Identities=12% Similarity=0.177 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
.|||..++++|.++|++
T Consensus 19 ~GIG~~ia~~l~~~G~~ 35 (266)
T 3oig_A 19 RSIAWGIARSLHEAGAR 35 (266)
T ss_dssp TSHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHCCCE
Confidence 46999999999999975
No 96
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=34.69 E-value=14 Score=25.90 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=14.8
Q ss_pred CccHHHHHhHHhcCCc
Q psy6806 25 GVGDVLGKRLESKGFD 40 (89)
Q Consensus 25 GIG~~lg~~L~~~Gf~ 40 (89)
|||..++++|.++|.+
T Consensus 19 GIG~aiA~~la~~Ga~ 34 (256)
T 4fs3_A 19 SIAFGVAKVLDQLGAK 34 (256)
T ss_dssp CHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHHHHHCCCE
Confidence 8999999999999964
No 97
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=33.44 E-value=23 Score=26.41 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=19.5
Q ss_pred CCCCcc-cccCccHHHHHhHHhcC-Cchhh
Q psy6806 16 GEKPVT-ELAGVGDVLGKRLESKG-FDKAY 43 (89)
Q Consensus 16 g~K~Vt-~l~GIG~~lg~~L~~~G-f~kAy 43 (89)
|..-+- -||||||..+.+|-.+| +++.+
T Consensus 222 GsD~~p~GvpGiG~ktA~kli~~gsle~i~ 251 (326)
T 1a76_A 222 GTDYNPGGVKGIGFKRAYELVRSGVAKDVL 251 (326)
T ss_dssp CCTTSTTTTTTCCHHHHHHHHHHTCHHHHH
T ss_pred CCCCCCCCCCCcCHHHHHHHHHcCCHHHHH
Confidence 443555 79999999999988752 34444
No 98
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=33.11 E-value=16 Score=25.29 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=19.1
Q ss_pred hHHHHhhhhCCCCCCCccc----ccCccHHHHHhHHhcCCc
Q psy6806 4 SQKHQNFVSEPMGEKPVTE----LAGVGDVLGKRLESKGFD 40 (89)
Q Consensus 4 S~Khr~Fv~ePMg~K~Vt~----l~GIG~~lg~~L~~~Gf~ 40 (89)
++-+.|+.-.+|-...+-- --|||..++++|.++|+.
T Consensus 12 ~~~~~n~~~~~m~~~k~vlITGas~gIG~a~a~~l~~~G~~ 52 (272)
T 4e3z_A 12 DLGTENLYFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWR 52 (272)
T ss_dssp ------------CCSCEEEETTTTSHHHHHHHHHHHHTTCE
T ss_pred CCCChhhhhhhccCCCEEEEECCCchHHHHHHHHHHHCCCE
Confidence 4456777778887654433 358999999999999975
No 99
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.04 E-value=58 Score=19.13 Aligned_cols=43 Identities=23% Similarity=0.205 Sum_probs=31.1
Q ss_pred CccHHHHHhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHHhh
Q psy6806 25 GVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETC 67 (89)
Q Consensus 25 GIG~~lg~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~~~ 67 (89)
.+-+....+|.+-||++.-....=...-+.|.+.-.+||.+-.
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~ 49 (64)
T 1whc_A 7 GAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHE 49 (64)
T ss_dssp CCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 3456678899999999966665433222578999999998643
No 100
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=33.02 E-value=16 Score=27.35 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=21.8
Q ss_pred CCCCCcccccCccHHHHHhHHhc--CCchhhHhhh
Q psy6806 15 MGEKPVTELAGVGDVLGKRLESK--GFDKAYVVLG 47 (89)
Q Consensus 15 Mg~K~Vt~l~GIG~~lg~~L~~~--Gf~kAy~lLG 47 (89)
||..-+--||||||..|.+|-.+ .+++.|.-+.
T Consensus 232 ~GsD~ipGv~GiG~KtA~kLl~~~gsle~i~~~~~ 266 (336)
T 1rxw_A 232 VGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALK 266 (336)
T ss_dssp HCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHHT
T ss_pred cCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhCC
Confidence 34445667999999999998873 3444444333
No 101
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=32.79 E-value=22 Score=28.63 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=24.5
Q ss_pred CCCCCCcccccCccHHHHHhHHhc-CCchhhHhh
Q psy6806 14 PMGEKPVTELAGVGDVLGKRLESK-GFDKAYVVL 46 (89)
Q Consensus 14 PMg~K~Vt~l~GIG~~lg~~L~~~-Gf~kAy~lL 46 (89)
|-.=..+..|+||||..+.++-+. |+.....|.
T Consensus 89 ~~~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~ 122 (575)
T 3b0x_A 89 PRGVLEVMEVPGVGPKTARLLYEGLGIDSLEKLK 122 (575)
T ss_dssp CHHHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHH
Confidence 333345688999999999998664 888776654
No 102
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=32.79 E-value=13 Score=22.71 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=18.2
Q ss_pred cHHHHHhHHhcCCchhhHhhhhh
Q psy6806 27 GDVLGKRLESKGFDKAYVVLGQF 49 (89)
Q Consensus 27 G~~lg~~L~~~Gf~kAy~lLGqf 49 (89)
+...+..|.+.||+++|+|-|=|
T Consensus 65 s~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 65 TSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp HHHHHHHHHHTTCSCEEECTTHH
T ss_pred HHHHHHHHHHcCCcCEEEecCCH
Confidence 34567789999999999887755
No 103
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=32.56 E-value=14 Score=24.80 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|+.
T Consensus 11 ~gIG~~~a~~l~~~G~~ 27 (230)
T 3guy_A 11 SGLGAELAKLYDAEGKA 27 (230)
T ss_dssp SHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 104
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=32.45 E-value=21 Score=26.79 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=17.7
Q ss_pred CCCCCcc-cccCccHHHHHhHHhc
Q psy6806 15 MGEKPVT-ELAGVGDVLGKRLESK 37 (89)
Q Consensus 15 Mg~K~Vt-~l~GIG~~lg~~L~~~ 37 (89)
||..-+. -||||||..|.+|..+
T Consensus 233 ~G~Dy~p~gv~GiG~ktA~kli~~ 256 (340)
T 1b43_A 233 VGTDYNPGGIKGIGLKKALEIVRH 256 (340)
T ss_dssp HCCTTSTTCSTTCCHHHHHHHHHT
T ss_pred cCCCCCCCCCCCccHHHHHHHHHH
Confidence 3443455 6999999999999884
No 105
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=32.03 E-value=54 Score=22.84 Aligned_cols=37 Identities=16% Similarity=0.420 Sum_probs=26.8
Q ss_pred HHHHhHHhcCCchhh-HhhhhhhhhhcCHHHHHHHHHHh
Q psy6806 29 VLGKRLESKGFDKAY-VVLGQFLLLKQNEELFVDWMKET 66 (89)
Q Consensus 29 ~lg~~L~~~Gf~kAy-~lLGqfL~l~k~~~~F~~WLk~~ 66 (89)
.+-.-|++.|++... ..|-.| +..|.......||+..
T Consensus 140 ~l~~yLeeRGI~~~la~fl~~y-~~~KEq~EYi~WL~~l 177 (182)
T 3jv1_A 140 SFTSYLSARGVNDTLANFIDQF-SLWSEQADYEEWLSSI 177 (182)
T ss_dssp HHHHHHHTTTCSHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 556677889999853 233444 5667899999999864
No 106
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=31.56 E-value=18 Score=27.94 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=14.7
Q ss_pred cc-cccCccHHHHHhHHh
Q psy6806 20 VT-ELAGVGDVLGKRLES 36 (89)
Q Consensus 20 Vt-~l~GIG~~lg~~L~~ 36 (89)
.. -||||||..|.+|-.
T Consensus 252 ~p~GVpGIG~KtA~kLl~ 269 (363)
T 3ory_A 252 NPDGFEGIGPKKALQLVK 269 (363)
T ss_dssp BTTCSTTCCHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHH
Confidence 45 789999999999887
No 107
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=31.47 E-value=18 Score=25.83 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=17.9
Q ss_pred CcccccCccHHHHHhHHhcCCch
Q psy6806 19 PVTELAGVGDVLGKRLESKGFDK 41 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~Gf~k 41 (89)
.++.|||||+..+.-.---+|.+
T Consensus 147 ~L~~l~GIG~~TA~~ill~~lg~ 169 (225)
T 2yg9_A 147 ELVQLPGIGRWTAEMFLLFALAR 169 (225)
T ss_dssp HHHTSTTCCHHHHHHHHHHTSCC
T ss_pred HHHcCCCCCHHHHHHHHHHhCCC
Confidence 36789999999998776655555
No 108
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=31.44 E-value=25 Score=24.34 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=34.6
Q ss_pred CcccccCccHHHHHhHHhcCCc------hhhHhhhhhhhhhcCHHHHHHHHHHh
Q psy6806 19 PVTELAGVGDVLGKRLESKGFD------KAYVVLGQFLLLKQNEELFVDWMKET 66 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~Gf~------kAy~lLGqfL~l~k~~~~F~~WLk~~ 66 (89)
.+.+.+.|=+++-+||.+++=. ||.+|| .||+.+.. +.|.+|+++.
T Consensus 41 ~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lL-eyLl~nGs-e~vv~~~r~~ 92 (150)
T 3onk_A 41 NFREREEILSMIFRRFTEKAGSEWRQIYKALQLL-DYLIKHGS-ERFIDDTRNS 92 (150)
T ss_dssp SHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHH-HHHHHHSC-HHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHcccccchHHHHHHHHHHH-HHHHHhCC-HHHHHHHHHH
Confidence 3556778889999999987533 788887 68888855 5788988764
No 109
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Probab=31.23 E-value=20 Score=24.76 Aligned_cols=17 Identities=29% Similarity=0.696 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 10 ~gIG~aia~~l~~~G~~ 26 (248)
T 3asu_A 10 AGFGECITRRFIQQGHK 26 (248)
T ss_dssp STTHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 59999999999999964
No 110
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=30.88 E-value=14 Score=25.27 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 13 ~GIG~a~a~~l~~~G~~ 29 (235)
T 3l6e_A 13 SGLGRALTIGLVERGHQ 29 (235)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 111
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=30.81 E-value=20 Score=25.59 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=30.4
Q ss_pred hhCCCCCCCcccccCccHHHHH-hHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHHhh
Q psy6806 11 VSEPMGEKPVTELAGVGDVLGK-RLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETC 67 (89)
Q Consensus 11 v~ePMg~K~Vt~l~GIG~~lg~-~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~~~ 67 (89)
+++-.|+.-..=.||||+.-+. ...+.|-| |.|.|+.+.-..|...-.+.+++..
T Consensus 167 ir~~~~~~~~iv~PGI~~~g~~p~~~~aGad--~iVvGr~I~~a~dp~~a~~~~~~~~ 222 (228)
T 3m47_A 167 LREIIGQDSFLISPGVGAQGGDPGETLRFAD--AIIVGRSIYLADNPAAAAAGAIESI 222 (228)
T ss_dssp HHHHHCSSSEEEECC---------CGGGTCS--EEEECHHHHTSSCHHHHHHHHHHHC
T ss_pred HHHhcCCCCEEEecCcCcCCCCHhHHHcCCC--EEEECHHHhCCCCHHHHHHHHHHHH
Confidence 3333454344456999986321 44457886 7899999776667766666666543
No 112
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=30.72 E-value=21 Score=26.96 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=17.4
Q ss_pred CCCCCcc-cccCccHHHHHhHHhc
Q psy6806 15 MGEKPVT-ELAGVGDVLGKRLESK 37 (89)
Q Consensus 15 Mg~K~Vt-~l~GIG~~lg~~L~~~ 37 (89)
||-.-+. -||||||..|.+|-.+
T Consensus 230 ~G~D~~p~Gv~GIG~KtA~kLi~~ 253 (346)
T 2izo_A 230 IGTDYNPDGIRGIGPERALKIIKK 253 (346)
T ss_dssp HCCSSSTTCSTTCCHHHHHHHHHH
T ss_pred cCCCCCCCCCCCcCHHHHHHHHHH
Confidence 3443555 6999999999988873
No 113
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=30.53 E-value=13 Score=22.60 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.0
Q ss_pred cHHHHHhHHhcCCchhhHhhhhh
Q psy6806 27 GDVLGKRLESKGFDKAYVVLGQF 49 (89)
Q Consensus 27 G~~lg~~L~~~Gf~kAy~lLGqf 49 (89)
+...+..|.+.||+++|+|-|=|
T Consensus 71 s~~a~~~L~~~G~~~v~~l~GG~ 93 (108)
T 1gmx_A 71 SKGAAQYLLQQGYDVVYSIDGGF 93 (108)
T ss_dssp HHHHHHHHHHHTCSSEEEETTHH
T ss_pred HHHHHHHHHHcCCceEEEecCCH
Confidence 45678889999999999887765
No 114
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=30.28 E-value=16 Score=27.60 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=17.9
Q ss_pred CcccccCccHHHHHhHHhc--CCchhhHh
Q psy6806 19 PVTELAGVGDVLGKRLESK--GFDKAYVV 45 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~--Gf~kAy~l 45 (89)
.+--||||||..+.+|-.+ ..++.|.-
T Consensus 204 niPGVpGIG~KTA~kLL~~~gsle~i~~~ 232 (290)
T 1exn_A 204 NIRGVEGIGAKRGYNIIREFGNVLDIIDQ 232 (290)
T ss_dssp TBCCCTTCCHHHHHHHHHHHCSHHHHHHH
T ss_pred CCCCCCcCCHhHHHHHHHHcCCHHHHHHH
Confidence 3556899999998887763 34444433
No 115
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.08 E-value=18 Score=19.94 Aligned_cols=11 Identities=18% Similarity=0.561 Sum_probs=9.5
Q ss_pred HHHHHHHHHHH
Q psy6806 76 DCYNCLKDWCG 86 (89)
Q Consensus 76 dc~~cl~eWc~ 86 (89)
-|+.|+.+|.+
T Consensus 42 fC~~Ci~~~~~ 52 (63)
T 2ysj_A 42 FCLKCITQIGE 52 (63)
T ss_dssp ECHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 48999999986
No 116
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=29.84 E-value=16 Score=26.68 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=19.6
Q ss_pred CCcccccCccHHHHHhHHhcCCchh
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDKA 42 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~kA 42 (89)
+.++.||||||..+.-..--++.+.
T Consensus 207 ~~L~~lpGIG~~TA~~ill~~lg~~ 231 (282)
T 1mpg_A 207 KTLQTFPGIGRWTANYFALRGWQAK 231 (282)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHSCCS
T ss_pred HHHhcCCCcCHHHHHHHHHHhCCCC
Confidence 4578999999999988776666654
No 117
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.79 E-value=17 Score=19.94 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHh
Q psy6806 75 GDCYNCLKDWCGE 87 (89)
Q Consensus 75 ~dc~~cl~eWc~~ 87 (89)
.-|..|+.+|...
T Consensus 43 ~fc~~Ci~~~~~~ 55 (69)
T 2ea6_A 43 VFCSQCLRDSLKN 55 (69)
T ss_dssp EEEHHHHHHHHHH
T ss_pred hhcHHHHHHHHHc
Confidence 4589999999764
No 118
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=29.44 E-value=19 Score=25.16 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=15.0
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
.|||..++++|.++|++
T Consensus 38 ~GIG~~ia~~l~~~G~~ 54 (280)
T 3nrc_A 38 KSIAYGIAKAMHREGAE 54 (280)
T ss_dssp TCHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHcCCE
Confidence 46999999999999974
No 119
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}
Probab=29.41 E-value=22 Score=24.21 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 11 ~gIG~~ia~~l~~~G~~ 27 (244)
T 1zmo_A 11 HFAGPAAVEALTQDGYT 27 (244)
T ss_dssp STTHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 59999999999999964
No 120
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=29.41 E-value=14 Score=23.86 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=19.6
Q ss_pred cHHHHHhHHhcCCchhhHhhhhh
Q psy6806 27 GDVLGKRLESKGFDKAYVVLGQF 49 (89)
Q Consensus 27 G~~lg~~L~~~Gf~kAy~lLGqf 49 (89)
+...+..|.+.||+++|+|-|=|
T Consensus 93 S~~aa~~L~~~G~~~v~~l~GG~ 115 (148)
T 2fsx_A 93 SIGAAEVATEAGITPAYNVLDGF 115 (148)
T ss_dssp HHHHHHHHHHTTCCSEEEETTTT
T ss_pred HHHHHHHHHHcCCcceEEEcCCh
Confidence 45677889999999999998876
No 121
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=29.34 E-value=16 Score=24.51 Aligned_cols=17 Identities=24% Similarity=0.776 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 12 ~gIG~~ia~~l~~~G~~ 28 (235)
T 3l77_A 12 RGIGEAIARALARDGYA 28 (235)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 48999999999999965
No 122
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=29.21 E-value=16 Score=24.79 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 19 ~giG~~~a~~l~~~G~~ 35 (253)
T 3qiv_A 19 GGIGQAYAEALAREGAA 35 (253)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 123
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=29.20 E-value=20 Score=24.59 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=16.9
Q ss_pred cccc--cCccHHHHHhHHhcCCc
Q psy6806 20 VTEL--AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 20 Vt~l--~GIG~~lg~~L~~~Gf~ 40 (89)
||-- .|||..++++|.++|.+
T Consensus 27 ITGasg~GIG~~~a~~l~~~G~~ 49 (266)
T 3o38_A 27 VTAAAGTGIGSTTARRALLEGAD 49 (266)
T ss_dssp ESSCSSSSHHHHHHHHHHHTTCE
T ss_pred EECCCCCchHHHHHHHHHHCCCE
Confidence 3544 37999999999999964
No 124
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=28.98 E-value=16 Score=24.58 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 24 ~gIG~~ia~~l~~~G~~ 40 (247)
T 3i1j_A 24 RGIGAAAARAYAAHGAS 40 (247)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 68999999999999974
No 125
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=28.89 E-value=23 Score=24.30 Aligned_cols=17 Identities=24% Similarity=0.051 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 11 ~gIG~~ia~~l~~~G~~ 27 (254)
T 1zmt_A 11 HFGGMGSALRLSEAGHT 27 (254)
T ss_dssp STTHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 49999999999999964
No 126
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=28.88 E-value=16 Score=24.91 Aligned_cols=17 Identities=29% Similarity=0.704 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 17 ~gIG~~~a~~l~~~G~~ 33 (264)
T 3i4f_A 17 KGLGKQVTEKLLAKGYS 33 (264)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chhHHHHHHHHHHCCCE
Confidence 58999999999999974
No 127
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=28.69 E-value=16 Score=25.24 Aligned_cols=17 Identities=24% Similarity=0.595 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 17 ~GIG~aia~~l~~~G~~ 33 (252)
T 3h7a_A 17 DYIGAEIAKKFAAEGFT 33 (252)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999974
No 128
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=28.60 E-value=16 Score=25.26 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 18 ~GIG~aia~~la~~G~~ 34 (259)
T 3edm_A 18 RDIGRACAIRFAQEGAN 34 (259)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999974
No 129
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...
Probab=28.46 E-value=21 Score=25.77 Aligned_cols=18 Identities=22% Similarity=0.291 Sum_probs=15.9
Q ss_pred CccHHHHHhHHhcCCchh
Q psy6806 25 GVGDVLGKRLESKGFDKA 42 (89)
Q Consensus 25 GIG~~lg~~L~~~Gf~kA 42 (89)
|||..++++|.++|++-.
T Consensus 15 GIG~aiA~~la~~G~~Vv 32 (329)
T 3lt0_A 15 GYGWGIAKELSKRNVKII 32 (329)
T ss_dssp SHHHHHHHHHHHTTCEEE
T ss_pred chHHHHHHHHHHCCCEEE
Confidence 999999999999997543
No 130
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=28.32 E-value=19 Score=20.03 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHh
Q psy6806 75 GDCYNCLKDWCGE 87 (89)
Q Consensus 75 ~dc~~cl~eWc~~ 87 (89)
.-|..|+.+|...
T Consensus 38 ~fc~~Ci~~~~~~ 50 (71)
T 3ng2_A 38 VFCSQCLRDSLKN 50 (71)
T ss_dssp EEEHHHHHHHHHH
T ss_pred hHhHHHHHHHHHc
Confidence 4589999999764
No 131
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Probab=28.12 E-value=21 Score=25.02 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 20 ~GIG~aia~~la~~G~~ 36 (297)
T 1d7o_A 20 NGYGWAVAKSLAAAGAE 36 (297)
T ss_dssp SSHHHHHHHHHHHTTCE
T ss_pred CChHHHHHHHHHHCCCe
Confidence 59999999999999964
No 132
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}
Probab=27.99 E-value=24 Score=24.84 Aligned_cols=17 Identities=24% Similarity=0.708 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 31 ~gIG~aia~~La~~G~~ 47 (272)
T 2nwq_A 31 SGFGEACARRFAEAGWS 47 (272)
T ss_dssp TSSHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 133
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.94 E-value=21 Score=20.31 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHh
Q psy6806 75 GDCYNCLKDWCGE 87 (89)
Q Consensus 75 ~dc~~cl~eWc~~ 87 (89)
.-|+.|+.+|...
T Consensus 37 ~fC~~Ci~~~~~~ 49 (72)
T 2djb_A 37 TFCKSCIVRHFYY 49 (72)
T ss_dssp EECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 3489999999753
No 134
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=27.94 E-value=19 Score=26.71 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=17.7
Q ss_pred CCcccccCccHHHHHhHHhcCCch
Q psy6806 18 KPVTELAGVGDVLGKRLESKGFDK 41 (89)
Q Consensus 18 K~Vt~l~GIG~~lg~~L~~~Gf~k 41 (89)
+.++.||||||..+.-..--++.+
T Consensus 211 ~~L~~lpGIG~~TA~~ill~~lg~ 234 (290)
T 3i0w_A 211 EELKKFMGVGPQVADCIMLFSMQK 234 (290)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHhCCCcCHHHHHHHHHHhCCC
Confidence 347899999999988766544444
No 135
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=27.75 E-value=82 Score=20.45 Aligned_cols=38 Identities=11% Similarity=0.129 Sum_probs=24.6
Q ss_pred HhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHHhhcc
Q psy6806 32 KRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETCQA 69 (89)
Q Consensus 32 ~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~~~gA 69 (89)
++..+.|...|+..||..+...+|-+.=.+|++..+..
T Consensus 10 ~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 47 (212)
T 3rjv_A 10 QQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ 47 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 34455677777777777776666766666666655433
No 136
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=27.72 E-value=17 Score=24.94 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.+.|.+
T Consensus 22 ~gIG~aia~~l~~~G~~ 38 (252)
T 3f1l_A 22 DGIGREAAMTYARYGAT 38 (252)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999974
No 137
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=27.52 E-value=22 Score=24.10 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.+.|..
T Consensus 26 ~giG~~ia~~l~~~G~~ 42 (271)
T 3ek2_A 26 RSIAYGIAKACKREGAE 42 (271)
T ss_dssp TSHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHcCCC
Confidence 48999999999999973
No 138
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=27.52 E-value=12 Score=29.81 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=21.8
Q ss_pred CCCCCCCcccccCccHHHHHhHHhc
Q psy6806 13 EPMGEKPVTELAGVGDVLGKRLESK 37 (89)
Q Consensus 13 ePMg~K~Vt~l~GIG~~lg~~L~~~ 37 (89)
.|.|-+-+..+|+||+.++++|-++
T Consensus 310 sprGyRiLs~IPrl~~~iae~Lv~~ 334 (377)
T 3c1y_A 310 SARGYRLLKTVARIPLSIGYNVVRM 334 (377)
T ss_dssp CCCSHHHHHHTSCCCHHHHHHHHHH
T ss_pred CchHHHHHhhCCCCCHHHHHHHHHH
Confidence 3888888999999999999998773
No 139
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=27.51 E-value=19 Score=27.66 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=16.5
Q ss_pred CCCCCcccccCccHHHHHhHHh
Q psy6806 15 MGEKPVTELAGVGDVLGKRLES 36 (89)
Q Consensus 15 Mg~K~Vt~l~GIG~~lg~~L~~ 36 (89)
||.....-||||||..+.+|-.
T Consensus 229 ~G~D~~d~IpGIG~KtA~kLl~ 250 (379)
T 1ul1_X 229 LGSDYCESIRGIGPKRAVDLIQ 250 (379)
T ss_dssp HHCSSSCCCTTCCHHHHHHHHH
T ss_pred hCCCcCCCCCCcCHHHHHHHHH
Confidence 5622556789999998888776
No 140
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=27.49 E-value=20 Score=19.35 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHh
Q psy6806 75 GDCYNCLKDWCGE 87 (89)
Q Consensus 75 ~dc~~cl~eWc~~ 87 (89)
.-|..|+.+|...
T Consensus 31 ~fc~~Ci~~~~~~ 43 (64)
T 2xeu_A 31 VFCSQCLRDSLKN 43 (64)
T ss_dssp EEEHHHHHHHHHH
T ss_pred chhHHHHHHHHHc
Confidence 3589999999764
No 141
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=27.42 E-value=25 Score=28.28 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=14.9
Q ss_pred CcccccCccHHHHHhHH
Q psy6806 19 PVTELAGVGDVLGKRLE 35 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~ 35 (89)
+++.+||||+..+.++.
T Consensus 129 ~l~~~~GiG~k~a~~i~ 145 (575)
T 3b0x_A 129 DLTRLKGFGPKRAERIR 145 (575)
T ss_dssp GGGGSTTCCHHHHHHHH
T ss_pred CcccCCCCCccHHHHHH
Confidence 48999999999999873
No 142
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=27.19 E-value=18 Score=24.84 Aligned_cols=16 Identities=38% Similarity=0.621 Sum_probs=14.8
Q ss_pred cCccHHHHHhHHhcCC
Q psy6806 24 AGVGDVLGKRLESKGF 39 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf 39 (89)
-|||..++++|.++|+
T Consensus 22 ~GIG~~~a~~L~~~G~ 37 (311)
T 3o26_A 22 KGIGFEICKQLSSNGI 37 (311)
T ss_dssp SHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHCCC
Confidence 5899999999999986
No 143
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=26.95 E-value=18 Score=24.84 Aligned_cols=17 Identities=24% Similarity=0.595 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 19 ~gIG~a~a~~l~~~G~~ 35 (248)
T 3op4_A 19 RGIGKAIAELLAERGAK 35 (248)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999975
No 144
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=26.76 E-value=18 Score=26.07 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 12 ~GIG~aia~~la~~Ga~ 28 (247)
T 3ged_A 12 HGIGKQICLDFLEAGDK 28 (247)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 48999999999999964
No 145
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=26.74 E-value=19 Score=24.63 Aligned_cols=17 Identities=24% Similarity=0.714 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 14 ~gIG~~ia~~l~~~G~~ 30 (246)
T 3osu_A 14 RGIGRSIALQLAEEGYN 30 (246)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999965
No 146
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=26.74 E-value=20 Score=25.08 Aligned_cols=17 Identities=24% Similarity=0.790 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 26 ~gIG~aia~~l~~~G~~ 42 (266)
T 3p19_A 26 SGIGEAIARRFSEEGHP 42 (266)
T ss_dssp SHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 68999999999999964
No 147
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=26.73 E-value=23 Score=25.20 Aligned_cols=17 Identities=12% Similarity=0.136 Sum_probs=15.0
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.+.|.+
T Consensus 43 ~GIG~aia~~la~~G~~ 59 (293)
T 3grk_A 43 RSIAWGIAKAAREAGAE 59 (293)
T ss_dssp SSHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHCCCE
Confidence 45999999999999965
No 148
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=26.72 E-value=19 Score=24.87 Aligned_cols=17 Identities=29% Similarity=0.874 Sum_probs=15.5
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|+.
T Consensus 36 ~gIG~~la~~l~~~G~~ 52 (267)
T 4iiu_A 36 KGIGRAIARQLAADGFN 52 (267)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 68999999999999975
No 149
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=26.60 E-value=23 Score=24.51 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 21 ~gIG~aia~~l~~~G~~ 37 (264)
T 3ucx_A 21 PALGTTLARRCAEQGAD 37 (264)
T ss_dssp TTHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCcCE
Confidence 58999999999999974
No 150
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Probab=26.58 E-value=23 Score=24.34 Aligned_cols=17 Identities=6% Similarity=0.239 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 21 ~gIG~~ia~~l~~~G~~ 37 (265)
T 1qsg_A 21 LSIAYGIAQAMHREGAE 37 (265)
T ss_dssp TSHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHCCCE
Confidence 39999999999999964
No 151
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Probab=26.44 E-value=21 Score=24.22 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 15 ~gIG~~~a~~l~~~G~~ 31 (254)
T 1sby_A 15 GGIGLDTSRELVKRNLK 31 (254)
T ss_dssp SHHHHHHHHHHHHTCCS
T ss_pred ChHHHHHHHHHHHCCCc
Confidence 48999999999999975
No 152
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=26.43 E-value=19 Score=25.93 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 21 ~GIG~aia~~la~~Ga~ 37 (261)
T 4h15_A 21 KGAGAATVSLFLELGAQ 37 (261)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHcCCE
Confidence 48999999999999964
No 153
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=26.37 E-value=19 Score=24.98 Aligned_cols=17 Identities=35% Similarity=0.733 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 14 ~gIG~aia~~l~~~G~~ 30 (258)
T 3oid_A 14 RGVGKAAAIRLAENGYN 30 (258)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999965
No 154
>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A
Probab=26.30 E-value=30 Score=24.75 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=34.8
Q ss_pred hhhCCCCCCCcccccCccHHHH--HhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHHh
Q psy6806 10 FVSEPMGEKPVTELAGVGDVLG--KRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKET 66 (89)
Q Consensus 10 Fv~ePMg~K~Vt~l~GIG~~lg--~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~~ 66 (89)
-|++-+|+ -+.=.|||++..+ ....+.|-| |.|.|+.+.-..|...=.+=+++.
T Consensus 144 ~ir~~~~~-f~~v~pGI~~~g~~~~~a~~~Gad--~iVvGr~I~~a~dp~~a~~~i~~~ 199 (215)
T 3ve9_A 144 RVKGDFPD-KLVISPGVGTQGAKPGIALCHGAD--YEIVGRSVYQSADPVRKLEEIVRS 199 (215)
T ss_dssp HHHHHCTT-SEEEECCTTSTTCCTTHHHHTTCS--EEEECHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHhCCC-cEEEcCCCCcCcCCHHHHHHcCCC--EEEeCHHHcCCCCHHHHHHHHHHH
Confidence 34555666 5655699998722 233357777 889999988887775444444433
No 155
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=26.30 E-value=19 Score=24.66 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 17 ~gIG~aia~~l~~~G~~ 33 (257)
T 3tpc_A 17 SGLGAAVTRMLAQEGAT 33 (257)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 156
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=26.28 E-value=19 Score=24.27 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=15.0
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 11 ~gIG~~~a~~l~~~G~~ 27 (257)
T 1fjh_A 11 TGIGAATRKVLEAAGHQ 27 (257)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 48999999999999964
No 157
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=26.26 E-value=19 Score=24.64 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 12 ~gIG~~ia~~l~~~G~~ 28 (247)
T 3dii_A 12 HGIGKQICLDFLEAGDK 28 (247)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 48999999999999964
No 158
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=26.20 E-value=13 Score=23.90 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=19.4
Q ss_pred cHHHHHhHHhcCCchhhHhhhhh
Q psy6806 27 GDVLGKRLESKGFDKAYVVLGQF 49 (89)
Q Consensus 27 G~~lg~~L~~~Gf~kAy~lLGqf 49 (89)
+...+..|.+.||+++|+|-|=|
T Consensus 95 S~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 95 AALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp HHHHHHHHHHHTCSCEEEESSCH
T ss_pred HHHHHHHHHHcCCcceEEEcCcH
Confidence 45778889999999999987765
No 159
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=26.10 E-value=19 Score=24.86 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 23 ~gIG~~ia~~l~~~G~~ 39 (278)
T 3sx2_A 23 RGQGRAHAVRLAADGAD 39 (278)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCe
Confidence 58999999999999965
No 160
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=26.08 E-value=20 Score=24.21 Aligned_cols=17 Identities=35% Similarity=0.636 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|..
T Consensus 17 ~gIG~~~a~~l~~~G~~ 33 (255)
T 3icc_A 17 RGIGRAIAKRLANDGAL 33 (255)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCe
Confidence 58999999999999963
No 161
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=26.08 E-value=20 Score=24.75 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 20 ~gIG~~ia~~l~~~G~~ 36 (287)
T 3pxx_A 20 RGQGRSHAVKLAEEGAD 36 (287)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCe
Confidence 48999999999999965
No 162
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=26.07 E-value=20 Score=24.68 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 32 ~gIG~~la~~l~~~G~~ 48 (251)
T 3orf_A 32 GALGAEVVKFFKSKSWN 48 (251)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999975
No 163
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=25.93 E-value=20 Score=24.89 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 39 ~gIG~~la~~l~~~G~~ 55 (271)
T 4iin_A 39 KGIGAEIAKTLASMGLK 55 (271)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 68999999999999974
No 164
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=25.86 E-value=20 Score=24.20 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.+.|+.
T Consensus 15 ~gIG~~~a~~l~~~G~~ 31 (247)
T 3lyl_A 15 RGIGFEVAHALASKGAT 31 (247)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 165
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=25.82 E-value=22 Score=21.80 Aligned_cols=13 Identities=31% Similarity=1.071 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHh
Q psy6806 75 GDCYNCLKDWCGE 87 (89)
Q Consensus 75 ~dc~~cl~eWc~~ 87 (89)
.-|+.||.+|...
T Consensus 44 ~FC~~Ci~~~~~~ 56 (100)
T 3lrq_A 44 LCCFSCIRRWLTE 56 (100)
T ss_dssp EEEHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 4589999999864
No 166
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=25.81 E-value=20 Score=24.73 Aligned_cols=17 Identities=24% Similarity=0.560 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 16 ~gIG~aia~~l~~~G~~ 32 (257)
T 3imf_A 16 SGMGKGMATRFAKEGAR 32 (257)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 167
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=25.77 E-value=20 Score=24.22 Aligned_cols=17 Identities=24% Similarity=0.560 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 24 ~gIG~~~a~~l~~~G~~ 40 (249)
T 3f9i_A 24 SGIGSAIARLLHKLGSK 40 (249)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 168
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=25.76 E-value=19 Score=22.76 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=18.5
Q ss_pred HHHHHhHHhcCCchhhHhhhhh
Q psy6806 28 DVLGKRLESKGFDKAYVVLGQF 49 (89)
Q Consensus 28 ~~lg~~L~~~Gf~kAy~lLGqf 49 (89)
...+..|.+.||+++|+|-|=|
T Consensus 105 ~~aa~~L~~~G~~~v~~l~GG~ 126 (139)
T 3d1p_A 105 GEAQKVASSHGYSNTSLYPGSM 126 (139)
T ss_dssp HHHHHHHHTTTCCSEEECTTHH
T ss_pred HHHHHHHHHcCCCCeEEeCCcH
Confidence 4577889999999999988876
No 169
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=25.72 E-value=20 Score=25.22 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|..
T Consensus 41 ~GIG~aia~~la~~G~~ 57 (271)
T 3v2g_A 41 RGIGAAIAKRLALEGAA 57 (271)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999974
No 170
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=25.72 E-value=20 Score=25.33 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 14 ~GIG~aia~~la~~G~~ 30 (264)
T 3tfo_A 14 GGIGEGIARELGVAGAK 30 (264)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 171
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=25.61 E-value=20 Score=24.62 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 16 ~gIG~a~a~~l~~~G~~ 32 (247)
T 3rwb_A 16 QGIGKAIAARLAADGAT 32 (247)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 172
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=25.55 E-value=24 Score=24.90 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 39 ~gIG~aia~~la~~G~~ 55 (277)
T 3gvc_A 39 AGIGLAVARRLADEGCH 55 (277)
T ss_dssp STHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 173
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=25.51 E-value=20 Score=24.37 Aligned_cols=17 Identities=29% Similarity=0.605 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|+.
T Consensus 19 ~gIG~~~a~~l~~~G~~ 35 (261)
T 3n74_A 19 SGFGEGMAKRFAKGGAK 35 (261)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 174
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=25.47 E-value=20 Score=24.88 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=20.9
Q ss_pred hhhCCCCCCCc--c-cccCccHHHHHhHHhcCCc
Q psy6806 10 FVSEPMGEKPV--T-ELAGVGDVLGKRLESKGFD 40 (89)
Q Consensus 10 Fv~ePMg~K~V--t-~l~GIG~~lg~~L~~~Gf~ 40 (89)
+....|.+|-| | .=-|||..++++|.++|.+
T Consensus 11 ~~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~ 44 (270)
T 3is3_A 11 YIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAK 44 (270)
T ss_dssp CCTTCCTTCEEEESCTTSHHHHHHHHHHHHTTCE
T ss_pred cCCCCcCCCEEEEECCCchHHHHHHHHHHHCCCE
Confidence 44444555432 2 2258999999999999964
No 175
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.45 E-value=23 Score=20.04 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHh
Q psy6806 75 GDCYNCLKDWCGE 87 (89)
Q Consensus 75 ~dc~~cl~eWc~~ 87 (89)
.-|+.|+.+|...
T Consensus 39 ~f~~~Ci~~~~~~ 51 (74)
T 2ep4_A 39 AFHRKCLIKWLEV 51 (74)
T ss_dssp EEEHHHHHHHHHH
T ss_pred EecHHHHHHHHHc
Confidence 3578999999764
No 176
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=25.44 E-value=20 Score=24.63 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 18 ~gIG~~ia~~l~~~G~~ 34 (259)
T 4e6p_A 18 RGIGRAFAEAYVREGAT 34 (259)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 177
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=25.40 E-value=20 Score=24.79 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 18 ~gIG~a~a~~l~~~G~~ 34 (255)
T 4eso_A 18 HGMGLATVRRLVEGGAE 34 (255)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 178
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...
Probab=25.39 E-value=25 Score=24.29 Aligned_cols=17 Identities=6% Similarity=0.198 Sum_probs=15.5
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 19 ~gIG~aia~~l~~~G~~ 35 (269)
T 2h7i_A 19 SSIAFHIARVAQEQGAQ 35 (269)
T ss_dssp TSHHHHHHHHHHHTTCE
T ss_pred CchHHHHHHHHHHCCCE
Confidence 69999999999999964
No 179
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=25.26 E-value=21 Score=24.78 Aligned_cols=17 Identities=29% Similarity=0.702 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|+.
T Consensus 40 ~GIG~aia~~l~~~G~~ 56 (281)
T 3ppi_A 40 GGLGEATVRRLHADGLG 56 (281)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 180
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=25.24 E-value=19 Score=24.40 Aligned_cols=17 Identities=6% Similarity=0.179 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 17 ~gIG~~ia~~l~~~G~~ 33 (241)
T 1dhr_A 17 GALGSRCVQAFRARNWW 33 (241)
T ss_dssp SHHHHHHHHHHHTTTCE
T ss_pred cHHHHHHHHHHHhCCCE
Confidence 48999999999999964
No 181
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=25.22 E-value=21 Score=24.21 Aligned_cols=17 Identities=24% Similarity=0.720 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 12 ~giG~~~a~~l~~~G~~ 28 (239)
T 2ekp_A 12 RGIGRAIAEALVARGYR 28 (239)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 48999999999999964
No 182
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=25.12 E-value=21 Score=24.78 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 20 ~gIG~aia~~l~~~G~~ 36 (262)
T 3pk0_A 20 KGIGRGIATVFARAGAN 36 (262)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999973
No 183
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=25.02 E-value=21 Score=24.45 Aligned_cols=17 Identities=24% Similarity=0.624 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 17 ~gIG~aia~~l~~~G~~ 33 (247)
T 2jah_A 17 SGIGEATARALAAEGAA 33 (247)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 184
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}
Probab=24.99 E-value=26 Score=24.97 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=15.5
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 21 ~GIG~aia~~la~~G~~ 37 (319)
T 2ptg_A 21 NGYGWAICKLLRAAGAR 37 (319)
T ss_dssp TSHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHCCCE
Confidence 69999999999999964
No 185
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=24.95 E-value=21 Score=24.42 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 24 ~gIG~~ia~~l~~~G~~ 40 (260)
T 2zat_A 24 DGIGLAIARRLAQDGAH 40 (260)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 186
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=24.94 E-value=18 Score=24.58 Aligned_cols=17 Identities=35% Similarity=0.806 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|+.
T Consensus 23 ~giG~~ia~~l~~~G~~ 39 (256)
T 3ezl_A 23 GGIGTSICQRLHKDGFR 39 (256)
T ss_dssp SHHHHHHHHHHHHTTEE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999965
No 187
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=24.92 E-value=23 Score=24.70 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 37 ~gIG~aia~~l~~~G~~ 53 (260)
T 3gem_A 37 QRVGLHCALRLLEHGHR 53 (260)
T ss_dssp SHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 57999999999999964
No 188
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=24.88 E-value=28 Score=25.70 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=17.4
Q ss_pred CcccccCccHHHHHhHHhcCCc
Q psy6806 19 PVTELAGVGDVLGKRLESKGFD 40 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~Gf~ 40 (89)
.++.||||||..+.-..--++.
T Consensus 211 ~L~~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 211 YLTSFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHhcCCCcCHHHHHHHHHHccC
Confidence 4678999999999877665555
No 189
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=24.81 E-value=21 Score=24.98 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 38 ~gIG~aia~~la~~G~~ 54 (269)
T 4dmm_A 38 RGIGRAIALELAAAGAK 54 (269)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999975
No 190
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=24.73 E-value=21 Score=24.83 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 25 ~gIG~a~a~~la~~G~~ 41 (280)
T 3pgx_A 25 RGQGRSHAVRLAAEGAD 41 (280)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 191
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=24.73 E-value=21 Score=24.37 Aligned_cols=17 Identities=29% Similarity=0.710 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 17 ~gIG~~ia~~l~~~G~~ 33 (249)
T 2ew8_A 17 NGIGRAIAERFAVEGAD 33 (249)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 192
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*
Probab=24.70 E-value=24 Score=25.11 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=15.5
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 21 ~GIG~aia~~la~~G~~ 37 (315)
T 2o2s_A 21 HGYGWAIAKHLASAGAR 37 (315)
T ss_dssp SSHHHHHHHHHHTTTCE
T ss_pred CChHHHHHHHHHHCCCE
Confidence 69999999999999964
No 193
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=24.68 E-value=21 Score=23.11 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=18.0
Q ss_pred HHHHHhHHhcCCchhhHhhhhh
Q psy6806 28 DVLGKRLESKGFDKAYVVLGQF 49 (89)
Q Consensus 28 ~~lg~~L~~~Gf~kAy~lLGqf 49 (89)
...+..|.+.||+++|+|-|=|
T Consensus 70 ~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 70 SQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp HHHHHHHHHTTCCSEEECTTHH
T ss_pred HHHHHHHHHcCCCCEEEecCHH
Confidence 4567889999999999887765
No 194
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}
Probab=24.67 E-value=21 Score=24.98 Aligned_cols=17 Identities=24% Similarity=0.474 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 38 ~gIG~aia~~la~~G~~ 54 (266)
T 3uxy_A 38 GGIGGAVVTALRAAGAR 54 (266)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 195
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}
Probab=24.67 E-value=19 Score=24.68 Aligned_cols=17 Identities=35% Similarity=0.476 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 19 ~gIG~aia~~l~~~G~~ 35 (257)
T 3tl3_A 19 SGLGLATTKRLLDAGAQ 35 (257)
T ss_dssp SHHHHHHHHHHHHHTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 196
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=24.64 E-value=22 Score=24.23 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 14 ~giG~~ia~~l~~~G~~ 30 (246)
T 2uvd_A 14 RGIGRAIAIDLAKQGAN 30 (246)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 197
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=24.62 E-value=21 Score=24.81 Aligned_cols=17 Identities=18% Similarity=0.474 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 38 ~gIG~aia~~l~~~G~~ 54 (260)
T 3un1_A 38 QGIGAGLVRAYRDRNYR 54 (260)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 198
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=24.60 E-value=19 Score=25.26 Aligned_cols=17 Identities=41% Similarity=0.851 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 37 ~GIG~aia~~la~~G~~ 53 (267)
T 3u5t_A 37 RGIGAAIAARLASDGFT 53 (267)
T ss_dssp SHHHHHHHHHHHHHTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 199
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=24.56 E-value=22 Score=25.01 Aligned_cols=17 Identities=24% Similarity=0.655 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 34 ~GIG~aia~~la~~G~~ 50 (279)
T 3sju_A 34 SGIGLAVARTLAARGIA 50 (279)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 200
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=24.55 E-value=22 Score=25.07 Aligned_cols=17 Identities=18% Similarity=0.475 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 41 ~GIG~aia~~la~~G~~ 57 (273)
T 3uf0_A 41 SGIGRAIAHGYARAGAH 57 (273)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999974
No 201
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=24.50 E-value=19 Score=24.84 Aligned_cols=16 Identities=31% Similarity=0.808 Sum_probs=14.9
Q ss_pred cCccHHHHHhHHhcCC
Q psy6806 24 AGVGDVLGKRLESKGF 39 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf 39 (89)
-|||..++++|.++|.
T Consensus 17 ~GIG~aia~~l~~~G~ 32 (250)
T 3nyw_A 17 QGIGAVIAAGLATDGY 32 (250)
T ss_dssp SHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHCCC
Confidence 5899999999999996
No 202
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=24.49 E-value=22 Score=24.53 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 23 ~gIG~~ia~~l~~~G~~ 39 (267)
T 1iy8_A 23 SGLGRATAVRLAAEGAK 39 (267)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 203
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=24.48 E-value=21 Score=25.83 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 19 ~GIG~aia~~la~~Ga~ 35 (255)
T 4g81_D 19 RGLGFAYAEGLAAAGAR 35 (255)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 48999999999999964
No 204
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=24.38 E-value=22 Score=25.22 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 57 ~GIG~aia~~la~~G~~ 73 (291)
T 3ijr_A 57 SGIGRAVSIAFAKEGAN 73 (291)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 205
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=24.38 E-value=22 Score=24.73 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 21 ~GIG~a~a~~la~~G~~ 37 (277)
T 3tsc_A 21 RGQGRAHAVRMAAEGAD 37 (277)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHcCCE
Confidence 58999999999999974
No 206
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=24.31 E-value=22 Score=24.70 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 20 ~gIG~a~a~~l~~~G~~ 36 (281)
T 3s55_A 20 RGMGRSHAVALAEAGAD 36 (281)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCe
Confidence 58999999999999964
No 207
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Probab=24.29 E-value=24 Score=24.27 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 20 ~gIG~~ia~~l~~~G~~ 36 (261)
T 2wyu_A 20 RSLGFAIAAKLKEAGAE 36 (261)
T ss_dssp SSHHHHHHHHHHHHTCE
T ss_pred CcHHHHHHHHHHHCCCE
Confidence 49999999999999964
No 208
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=24.20 E-value=20 Score=23.75 Aligned_cols=17 Identities=24% Similarity=0.645 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 12 ggiG~~la~~l~~~G~~ 28 (242)
T 1uay_A 12 SGLGRAAALALKARGYR 28 (242)
T ss_dssp SHHHHHHHHHHHHHTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 48999999999999865
No 209
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=24.16 E-value=22 Score=24.60 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|..
T Consensus 18 ~GIG~aia~~l~~~G~~ 34 (265)
T 3lf2_A 18 SGIGLATVELLLEAGAA 34 (265)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999974
No 210
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=24.15 E-value=22 Score=24.34 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 16 ~giG~~ia~~l~~~G~~ 32 (253)
T 1hxh_A 16 SGVGLEVVKLLLGEGAK 32 (253)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 211
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=24.14 E-value=21 Score=24.74 Aligned_cols=17 Identities=29% Similarity=0.751 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 35 ~gIG~~~a~~l~~~G~~ 51 (269)
T 3gk3_A 35 GGLGAAISRRLHDAGMA 51 (269)
T ss_dssp SHHHHHHHHHHHTTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 68999999999999975
No 212
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=24.14 E-value=24 Score=27.23 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=18.1
Q ss_pred CcccccCccHHHHHhHHhcCCch
Q psy6806 19 PVTELAGVGDVLGKRLESKGFDK 41 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~Gf~k 41 (89)
.++.||||||..+.-..--+|.+
T Consensus 254 ~L~~LpGIGp~TA~~ill~alg~ 276 (360)
T 2xhi_A 254 ALCILPGVGTCVADKICLMALDK 276 (360)
T ss_dssp HHTTSTTCCHHHHHHHHHHHSCC
T ss_pred HHHhCCCCCHHHHHHHHHHhCCC
Confidence 47899999999998876655555
No 213
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=24.13 E-value=22 Score=24.59 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 17 ~gIG~~ia~~l~~~G~~ 33 (260)
T 1nff_A 17 RGMGASHVRAMVAEGAK 33 (260)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 214
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=24.12 E-value=19 Score=24.28 Aligned_cols=17 Identities=12% Similarity=0.436 Sum_probs=15.0
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 13 ~gIG~~~a~~l~~~G~~ 29 (236)
T 1ooe_A 13 GALGSAILEFFKKNGYT 29 (236)
T ss_dssp SHHHHHHHHHHHHTTEE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 48999999999999863
No 215
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=24.09 E-value=22 Score=24.74 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 21 ~gIG~aia~~la~~G~~ 37 (286)
T 3uve_A 21 RGQGRSHAVRLAQEGAD 37 (286)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCe
Confidence 58999999999999965
No 216
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=24.03 E-value=22 Score=24.85 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 24 ~GIG~aia~~l~~~G~~ 40 (269)
T 3vtz_A 24 SGIGLAVVDALVRYGAK 40 (269)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999965
No 217
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=24.00 E-value=22 Score=25.78 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 21 ~GIG~aia~~la~~Ga~ 37 (242)
T 4b79_A 21 SGIGAAIAMQFAELGAE 37 (242)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 48999999999999965
No 218
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=24.00 E-value=26 Score=24.32 Aligned_cols=17 Identities=6% Similarity=0.069 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 18 ~gIG~~~a~~l~~~G~~ 34 (275)
T 2pd4_A 18 KSIAYGIAQSCFNQGAT 34 (275)
T ss_dssp TSHHHHHHHHHHTTTCE
T ss_pred CcHHHHHHHHHHHCCCE
Confidence 49999999999999964
No 219
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=23.95 E-value=23 Score=24.72 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 21 ~gIG~aia~~l~~~G~~ 37 (271)
T 3tzq_B 21 GGIGLETSRVLARAGAR 37 (271)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 220
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=23.91 E-value=22 Score=25.18 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 59 ~GIG~aia~~la~~G~~ 75 (294)
T 3r3s_A 59 SGIGRAAAIAYAREGAD 75 (294)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999975
No 221
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Probab=23.89 E-value=23 Score=24.28 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 25 ~gIG~~ia~~l~~~G~~ 41 (247)
T 1uzm_A 25 RGIGLAIAQRLAADGHK 41 (247)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 222
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=23.88 E-value=28 Score=23.75 Aligned_cols=17 Identities=18% Similarity=0.218 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.+.|.+
T Consensus 32 ~giG~~~a~~l~~~G~~ 48 (267)
T 3gdg_A 32 KGMGIEAARGCAEMGAA 48 (267)
T ss_dssp SSHHHHHHHHHHHTSCE
T ss_pred CChHHHHHHHHHHCCCe
Confidence 39999999999999964
No 223
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=23.86 E-value=23 Score=24.29 Aligned_cols=17 Identities=24% Similarity=0.624 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 22 ~gIG~~ia~~l~~~G~~ 38 (263)
T 3ak4_A 22 KGIGAAIARALDKAGAT 38 (263)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 48999999999999964
No 224
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=23.83 E-value=22 Score=23.83 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=23.0
Q ss_pred CcccccCccHHHHHhHHhcCCchhhHhhhhh
Q psy6806 19 PVTELAGVGDVLGKRLESKGFDKAYVVLGQF 49 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLGqf 49 (89)
.+..-.=||..+++|+-++|+++++.=-|-|
T Consensus 64 n~~AA~~vG~llA~Ral~~GI~~vvfDrgg~ 94 (114)
T 2zjr_L 64 KTDTAAAVGKALAAAAAEKGIKQVVFDRGSY 94 (114)
T ss_dssp SSSSHHHHHHHHHHHHHTTCCCCCEECCCSS
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCCc
Confidence 3444455999999999999999976444444
No 225
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=23.82 E-value=23 Score=23.61 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 17 ggiG~~~a~~l~~~G~~ 33 (244)
T 1cyd_A 17 KGIGRDTVKALHASGAK 33 (244)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 226
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=23.80 E-value=23 Score=24.24 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 17 ~giG~~ia~~l~~~G~~ 33 (250)
T 2fwm_X 17 KGIGYATALAFVEAGAK 33 (250)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 227
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=23.79 E-value=23 Score=24.23 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 15 ~giG~~ia~~l~~~G~~ 31 (245)
T 1uls_A 15 HGIGRATLELFAKEGAR 31 (245)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 228
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=23.77 E-value=20 Score=24.74 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 22 ~gIG~~ia~~l~~~G~~ 38 (256)
T 3gaf_A 22 AGIGRAIAGTFAKAGAS 38 (256)
T ss_dssp SHHHHHHHHHHHHHTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 229
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=23.71 E-value=23 Score=24.61 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 30 ~gIG~aia~~l~~~G~~ 46 (266)
T 4egf_A 30 KGIGADIARAFAAAGAR 46 (266)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999974
No 230
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.70 E-value=28 Score=19.72 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHh
Q psy6806 75 GDCYNCLKDWCGE 87 (89)
Q Consensus 75 ~dc~~cl~eWc~~ 87 (89)
.-|..|+.+|...
T Consensus 40 ~fC~~Ci~~~~~~ 52 (85)
T 2ecw_A 40 SFCRACITLNYES 52 (85)
T ss_dssp CBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4589999999864
No 231
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=23.65 E-value=23 Score=24.88 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|..
T Consensus 38 ~GIG~aia~~la~~G~~ 54 (270)
T 3ftp_A 38 RGIGRAIALELARRGAM 54 (270)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999973
No 232
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=23.58 E-value=23 Score=24.28 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 19 ~giG~~ia~~l~~~G~~ 35 (260)
T 2ae2_A 19 RGIGYGIVEELASLGAS 35 (260)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 233
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=23.58 E-value=23 Score=24.29 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 16 ~gIG~~ia~~l~~~G~~ 32 (256)
T 2d1y_A 16 RGIGRAIAQAFAREGAL 32 (256)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 234
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=23.57 E-value=23 Score=24.06 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 16 ~gIG~~ia~~l~~~G~~ 32 (246)
T 2ag5_A 16 QGIGQAAALAFAREGAK 32 (246)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 235
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=23.54 E-value=23 Score=24.94 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 35 ~GIG~~ia~~la~~G~~ 51 (281)
T 3v2h_A 35 SGIGLAIARTLAKAGAN 51 (281)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999974
No 236
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=23.53 E-value=23 Score=24.52 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 20 ~gIG~aia~~l~~~G~~ 36 (267)
T 3t4x_A 20 AGIGKAIATSLVAEGAN 36 (267)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 237
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=23.53 E-value=21 Score=25.75 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=15.1
Q ss_pred Ccc-cccCccHHHHHh-HHhcCC
Q psy6806 19 PVT-ELAGVGDVLGKR-LESKGF 39 (89)
Q Consensus 19 ~Vt-~l~GIG~~lg~~-L~~~Gf 39 (89)
.+. .||||||..+.- |...|+
T Consensus 125 ~Ll~~LpGVG~KTA~~vL~~~g~ 147 (214)
T 3fhf_A 125 FLVRNIKGIGYKEASHFLRNVGY 147 (214)
T ss_dssp HHHHHSTTCCHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCHHHHHHHHHHcCC
Confidence 356 899999999875 433454
No 238
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=23.50 E-value=23 Score=24.32 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 29 ~gIG~~~a~~l~~~G~~ 45 (249)
T 1o5i_A 29 RGIGRAVADVLSQEGAE 45 (249)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 239
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=23.49 E-value=24 Score=23.71 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 21 ggiG~~la~~l~~~G~~ 37 (254)
T 2wsb_A 21 SGIGLEICRAFAASGAR 37 (254)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 240
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Probab=23.48 E-value=24 Score=23.55 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 11 ggiG~~la~~l~~~G~~ 27 (244)
T 1edo_A 11 RGIGKAIALSLGKAGCK 27 (244)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 48999999999999964
No 241
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*
Probab=23.47 E-value=23 Score=24.34 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 21 ~gIG~~ia~~l~~~G~~ 37 (276)
T 1mxh_A 21 RRIGHSIAVRLHQQGFR 37 (276)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 242
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=23.45 E-value=23 Score=25.06 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 18 ~GIG~aia~~la~~G~~ 34 (280)
T 3tox_A 18 SGIGRAAALLFAREGAK 34 (280)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 243
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}
Probab=23.43 E-value=23 Score=24.25 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 15 ~gIG~~ia~~l~~~G~~ 31 (260)
T 2qq5_A 15 RGIGRGIALQLCKAGAT 31 (260)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 244
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}
Probab=23.33 E-value=29 Score=24.19 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=17.1
Q ss_pred cccc---cCccHHHHHhHHhcCCc
Q psy6806 20 VTEL---AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 20 Vt~l---~GIG~~lg~~L~~~Gf~ 40 (89)
||-- -|||..++++|.++|.+
T Consensus 26 VTGas~~~gIG~~ia~~l~~~G~~ 49 (285)
T 2p91_A 26 ITGVANERSIAYGIAKSFHREGAQ 49 (285)
T ss_dssp ECCCSSTTSHHHHHHHHHHHTTCE
T ss_pred EECCCCCCcHHHHHHHHHHHcCCE
Confidence 4554 39999999999999964
No 245
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=23.31 E-value=24 Score=24.92 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=15.7
Q ss_pred ccCccHHHHHhHHhcCCc
Q psy6806 23 LAGVGDVLGKRLESKGFD 40 (89)
Q Consensus 23 l~GIG~~lg~~L~~~Gf~ 40 (89)
=-|||..++++|.++|..
T Consensus 36 s~GIG~aia~~l~~~G~~ 53 (277)
T 4dqx_A 36 GSGIGRATAELFAKNGAY 53 (277)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHHCCCE
Confidence 368999999999999973
No 246
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Probab=23.23 E-value=24 Score=24.82 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 15 ~GIG~aia~~la~~G~~ 31 (281)
T 3zv4_A 15 SGLGRALVDRFVAEGAR 31 (281)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCcCE
Confidence 58999999999999963
No 247
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=23.23 E-value=24 Score=24.96 Aligned_cols=17 Identities=29% Similarity=0.716 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 43 ~GIG~aia~~la~~G~~ 59 (281)
T 4dry_A 43 TGVGRGIAQALSAEGYS 59 (281)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 248
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=23.21 E-value=24 Score=24.32 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 17 ~gIG~~ia~~l~~~G~~ 33 (262)
T 1zem_A 17 GNIGLATALRLAEEGTA 33 (262)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 48999999999999964
No 249
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=23.20 E-value=24 Score=24.19 Aligned_cols=17 Identities=18% Similarity=0.491 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 17 ~gIG~~ia~~l~~~G~~ 33 (263)
T 3ai3_A 17 SGIGLAIAEGFAKEGAH 33 (263)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 250
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=23.13 E-value=24 Score=24.32 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 16 ~gIG~~ia~~l~~~G~~ 32 (278)
T 1spx_A 16 NGIGRATAVLFAREGAK 32 (278)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 251
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=23.10 E-value=24 Score=24.20 Aligned_cols=17 Identities=29% Similarity=0.560 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 14 ~gIG~~ia~~l~~~G~~ 30 (260)
T 1x1t_A 14 SGIGLGIATALAAQGAD 30 (260)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHcCCE
Confidence 48999999999999964
No 252
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=23.09 E-value=27 Score=19.43 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHh
Q psy6806 76 DCYNCLKDWCGE 87 (89)
Q Consensus 76 dc~~cl~eWc~~ 87 (89)
-|..|+..|...
T Consensus 39 fc~~Ci~~~~~~ 50 (69)
T 2kiz_A 39 FHQVCVDQWLIT 50 (69)
T ss_dssp EEHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 578999999764
No 253
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=23.07 E-value=24 Score=24.71 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.+.|++
T Consensus 26 ~gIG~~~a~~L~~~G~~ 42 (291)
T 3rd5_A 26 SGLGAVTARELARRGAT 42 (291)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 254
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=23.06 E-value=24 Score=24.25 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 15 ~gIG~~ia~~l~~~G~~ 31 (254)
T 1hdc_A 15 RGLGAEAARQAVAAGAR 31 (254)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 255
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=22.86 E-value=24 Score=25.00 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 38 ~GIG~aia~~la~~G~~ 54 (299)
T 3t7c_A 38 RGQGRSHAITLAREGAD 54 (299)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999975
No 256
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=22.86 E-value=24 Score=24.50 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 31 ~gIG~aia~~l~~~G~~ 47 (273)
T 1ae1_A 31 KGIGYAIVEELAGLGAR 47 (273)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 257
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=22.85 E-value=24 Score=24.81 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=18.0
Q ss_pred hHHHHhhhhCCCCC----CC--cc-cccCccHHHHHhHHhcCCc
Q psy6806 4 SQKHQNFVSEPMGE----KP--VT-ELAGVGDVLGKRLESKGFD 40 (89)
Q Consensus 4 S~Khr~Fv~ePMg~----K~--Vt-~l~GIG~~lg~~L~~~Gf~ 40 (89)
+...+|+..++|-. |- || .=-|||..++++|.++|.+
T Consensus 12 ~~~~~n~~~~~mm~~~~~k~~lVTGas~GIG~aia~~la~~G~~ 55 (280)
T 4da9_A 12 DLGTENLYFQSMMTQKARPVAIVTGGRRGIGLGIARALAASGFD 55 (280)
T ss_dssp -----------CCSCCCCCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred cccccchhhhhhhhccCCCEEEEecCCCHHHHHHHHHHHHCCCe
Confidence 34567777776633 21 12 2358999999999999974
No 258
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=22.84 E-value=24 Score=24.26 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=15.7
Q ss_pred ccCccHHHHHhHHhcCCc
Q psy6806 23 LAGVGDVLGKRLESKGFD 40 (89)
Q Consensus 23 l~GIG~~lg~~L~~~Gf~ 40 (89)
--|||..++++|.++|++
T Consensus 38 s~gIG~~la~~l~~~G~~ 55 (262)
T 3rkr_A 38 SRGIGAAIARKLGSLGAR 55 (262)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CChHHHHHHHHHHHCCCE
Confidence 368999999999999974
No 259
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=22.84 E-value=24 Score=24.84 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=17.0
Q ss_pred HHhhhhCCCCC---CC--cc-cccCccHHHHHhHHhcCCc
Q psy6806 7 HQNFVSEPMGE---KP--VT-ELAGVGDVLGKRLESKGFD 40 (89)
Q Consensus 7 hr~Fv~ePMg~---K~--Vt-~l~GIG~~lg~~L~~~Gf~ 40 (89)
++++...+|.. |- || .=-|||..++++|.++|.+
T Consensus 15 ~~~~~~~~m~~~~~k~~lVTGas~GIG~aia~~la~~G~~ 54 (272)
T 4dyv_A 15 TENLYFQSMSKTGKKIAIVTGAGSGVGRAVAVALAGAGYG 54 (272)
T ss_dssp -------------CCEEEETTTTSHHHHHHHHHHHHTTCE
T ss_pred cceeehhhhcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE
Confidence 45666666643 32 22 2358999999999999964
No 260
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=22.84 E-value=1.2e+02 Score=18.50 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=22.5
Q ss_pred HhHHhcCCchhhHhhhhhhhh----hcCHHHHHHHHHHhhcc
Q psy6806 32 KRLESKGFDKAYVVLGQFLLL----KQNEELFVDWMKETCQA 69 (89)
Q Consensus 32 ~~L~~~Gf~kAy~lLGqfL~l----~k~~~~F~~WLk~~~gA 69 (89)
++-.+.|...|+..||..+.. .+|.+.=.+|++..+..
T Consensus 49 ~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 49 SKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence 334446666666666666665 55666666666655443
No 261
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=22.84 E-value=24 Score=24.58 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 16 ~GIG~aia~~la~~G~~ 32 (274)
T 3e03_A 16 RGIGLAIALRAARDGAN 32 (274)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 262
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=22.80 E-value=24 Score=24.68 Aligned_cols=17 Identities=18% Similarity=0.567 Sum_probs=15.0
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|..
T Consensus 37 ~gIG~aia~~la~~G~~ 53 (266)
T 3grp_A 37 GGIGEAIARCFHAQGAI 53 (266)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 263
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=22.79 E-value=24 Score=24.80 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|..
T Consensus 43 ~GIG~aia~~la~~G~~ 59 (275)
T 4imr_A 43 RGIGAAIAEGLAGAGAH 59 (275)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 264
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A
Probab=22.79 E-value=25 Score=23.55 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 16 ggiG~~~a~~l~~~G~~ 32 (251)
T 1zk4_A 16 LGIGLAIATKFVEEGAK 32 (251)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 265
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=22.77 E-value=25 Score=23.43 Aligned_cols=17 Identities=29% Similarity=0.751 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 15 ggiG~~~a~~l~~~G~~ 31 (234)
T 2ehd_A 15 RGIGEATARLLHAKGYR 31 (234)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 48999999999999964
No 266
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=22.76 E-value=24 Score=25.86 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=23.8
Q ss_pred cCccHHHHHhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHH
Q psy6806 24 AGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKE 65 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~ 65 (89)
-|||..++++|.++|.+ ++ +..++++.-.+-.++
T Consensus 39 ~GIG~aiA~~la~~Ga~---V~-----i~~r~~~~l~~~~~~ 72 (273)
T 4fgs_A 39 SGIGLAAAKRFVAEGAR---VF-----ITGRRKDVLDAAIAE 72 (273)
T ss_dssp SHHHHHHHHHHHHTTCE---EE-----EEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCE---EE-----EEECCHHHHHHHHHH
Confidence 58999999999999964 32 234566665554443
No 267
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=22.76 E-value=25 Score=24.08 Aligned_cols=17 Identities=35% Similarity=0.757 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 12 ~gIG~~ia~~l~~~G~~ 28 (256)
T 1geg_A 12 QGIGKAIALRLVKDGFA 28 (256)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 48999999999999964
No 268
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=22.71 E-value=25 Score=23.53 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=15.0
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 12 ggiG~~~a~~l~~~G~~ 28 (250)
T 2cfc_A 12 SGNGLAIATRFLARGDR 28 (250)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 269
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=22.70 E-value=25 Score=23.48 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=15.0
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 15 ggiG~~~a~~l~~~G~~ 31 (247)
T 2hq1_A 15 RGLGKAIAWKLGNMGAN 31 (247)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 270
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=22.70 E-value=25 Score=24.49 Aligned_cols=17 Identities=24% Similarity=0.603 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 18 ~gIG~~ia~~l~~~G~~ 34 (264)
T 2dtx_A 18 MGIGRAIAERFVDEGSK 34 (264)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 271
>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae}
Probab=22.64 E-value=1e+02 Score=22.72 Aligned_cols=38 Identities=16% Similarity=0.468 Sum_probs=27.5
Q ss_pred HHHHHhHHhcCCchhh-HhhhhhhhhhcCHHHHHHHHHHh
Q psy6806 28 DVLGKRLESKGFDKAY-VVLGQFLLLKQNEELFVDWMKET 66 (89)
Q Consensus 28 ~~lg~~L~~~Gf~kAy-~lLGqfL~l~k~~~~F~~WLk~~ 66 (89)
..+-.-|++.|++... ..|-+| +..|.......||+..
T Consensus 184 ~~l~~yLeeRGI~~~la~fl~~y-~~~KEq~EYi~WL~~l 222 (227)
T 3qv0_A 184 ESLEAYLESRGVNEELASFISAY-SEFKENNEYISWLEKM 222 (227)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3566778889999853 334455 4667889999999864
No 272
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=22.59 E-value=21 Score=21.35 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=18.1
Q ss_pred cHHHHHhHHhcCCchhhHhhhhhh
Q psy6806 27 GDVLGKRLESKGFDKAYVVLGQFL 50 (89)
Q Consensus 27 G~~lg~~L~~~Gf~kAy~lLGqfL 50 (89)
+...+..|.+.|| ++|+|-|=|-
T Consensus 69 s~~a~~~L~~~G~-~v~~l~GG~~ 91 (100)
T 3foj_A 69 SAQVVQYLEQNGV-NAVNVEGGMD 91 (100)
T ss_dssp HHHHHHHHHTTTC-EEEEETTHHH
T ss_pred HHHHHHHHHHCCC-CEEEecccHH
Confidence 3467788999999 9999888663
No 273
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}
Probab=22.49 E-value=25 Score=24.10 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 17 ~gIG~~ia~~l~~~G~~ 33 (260)
T 2z1n_A 17 SGLGFASALELARNGAR 33 (260)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 274
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=22.47 E-value=25 Score=24.49 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 31 ~gIG~~ia~~l~~~G~~ 47 (267)
T 1vl8_A 31 RGLGFGIAQGLAEAGCS 47 (267)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 275
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=22.42 E-value=25 Score=23.44 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 17 ggiG~~~a~~l~~~G~~ 33 (258)
T 3afn_B 17 QGIGLATARLFARAGAK 33 (258)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 276
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=22.41 E-value=25 Score=24.45 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 16 ~gIG~~ia~~l~~~G~~ 32 (280)
T 1xkq_A 16 NGIGRTTAILFAQEGAN 32 (280)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 277
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=22.40 E-value=25 Score=24.68 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 36 ~gIG~aia~~la~~G~~ 52 (271)
T 4ibo_A 36 RGLGRAMAEGLAVAGAR 52 (271)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 278
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=22.37 E-value=22 Score=22.27 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=18.3
Q ss_pred HHHHHhHHhcCCchhhHhhhhh
Q psy6806 28 DVLGKRLESKGFDKAYVVLGQF 49 (89)
Q Consensus 28 ~~lg~~L~~~Gf~kAy~lLGqf 49 (89)
...+..|.+.||+++|+|-|=|
T Consensus 100 ~~a~~~L~~~G~~~v~~l~GG~ 121 (139)
T 2hhg_A 100 ALAAKTAQDMGLKPVAHIEGGF 121 (139)
T ss_dssp HHHHHHHHHHTCCSEEEETTHH
T ss_pred HHHHHHHHHcCCCCeEEecCCH
Confidence 3567789999999999988866
No 279
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=22.37 E-value=25 Score=24.84 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 38 ~GIG~aia~~la~~G~~ 54 (283)
T 3v8b_A 38 SGIGRATALALAADGVT 54 (283)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 280
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Probab=22.33 E-value=25 Score=24.00 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 14 ~giG~~ia~~l~~~G~~ 30 (255)
T 2q2v_A 14 SGIGLGIAQVLARAGAN 30 (255)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 281
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Probab=22.19 E-value=26 Score=24.45 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 39 ~gIG~~ia~~l~~~G~~ 55 (283)
T 1g0o_A 39 RGIGREMAMELGRRGCK 55 (283)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 48999999999999964
No 282
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=22.18 E-value=28 Score=23.17 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=26.6
Q ss_pred CCCcccccCccHHHHHhHHhcCCchhhHhhhhhh
Q psy6806 17 EKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFL 50 (89)
Q Consensus 17 ~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLGqfL 50 (89)
...+..-.=||..+|+|+.++|++++..=-|-|+
T Consensus 64 ~~n~~AA~~vG~llA~Ral~~GI~~vvfDrgg~~ 97 (116)
T 3r8s_O 64 TGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQ 97 (116)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTTCCCCEEECTTSC
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCc
Confidence 3456666779999999999999998765556554
No 283
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=22.17 E-value=31 Score=24.43 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=17.6
Q ss_pred ccccc---CccHHHHHhHHhcCCc
Q psy6806 20 VTELA---GVGDVLGKRLESKGFD 40 (89)
Q Consensus 20 Vt~l~---GIG~~lg~~L~~~Gf~ 40 (89)
||--. |||..++++|.++|.+
T Consensus 35 VTGasg~~GIG~~ia~~la~~G~~ 58 (296)
T 3k31_A 35 IIGVANDKSLAWGIAKAVCAQGAE 58 (296)
T ss_dssp EECCCSTTSHHHHHHHHHHHTTCE
T ss_pred EEeCCCCCCHHHHHHHHHHHCCCE
Confidence 45554 8999999999999975
No 284
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=22.15 E-value=21 Score=24.87 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 21 ~GIG~aia~~la~~G~~ 37 (262)
T 3ksu_A 21 KNLGALTAKTFALESVN 37 (262)
T ss_dssp SHHHHHHHHHHTTSSCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 285
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=22.09 E-value=26 Score=25.41 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=23.4
Q ss_pred cCccHHHHHhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHH
Q psy6806 24 AGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKE 65 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~ 65 (89)
-|||..++++|+++|.+ +++ ..++++.-.+-..+
T Consensus 17 ~GIG~aiA~~la~~Ga~---Vv~-----~~~~~~~~~~~~~~ 50 (254)
T 4fn4_A 17 SGIGRAIAKKFALNDSI---VVA-----VELLEDRLNQIVQE 50 (254)
T ss_dssp SHHHHHHHHHHHHTTCE---EEE-----EESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCE---EEE-----EECCHHHHHHHHHH
Confidence 48999999999999964 332 34566655554443
No 286
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=22.06 E-value=1.7e+02 Score=18.91 Aligned_cols=39 Identities=10% Similarity=0.218 Sum_probs=28.9
Q ss_pred hHHhcCCchhhHhhhhhhhh----hcCHHHHHHHHHHhhccch
Q psy6806 33 RLESKGFDKAYVVLGQFLLL----KQNEELFVDWMKETCQANA 71 (89)
Q Consensus 33 ~L~~~Gf~kAy~lLGqfL~l----~k~~~~F~~WLk~~~gAn~ 71 (89)
+-.+.|...|+..||..+.. .+|.+.=.+|++..+..+.
T Consensus 78 ~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 78 KAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 33457888888888888776 6677777888887776655
No 287
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=22.06 E-value=24 Score=24.84 Aligned_cols=17 Identities=29% Similarity=0.646 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 19 ~GIG~aia~~l~~~G~~ 35 (285)
T 3sc4_A 19 RGIGLAIAKRVAADGAN 35 (285)
T ss_dssp SHHHHHHHHHHHTTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999973
No 288
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=22.04 E-value=26 Score=25.58 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=15.4
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 19 ~GIG~aiA~~la~~Ga~ 35 (247)
T 4hp8_A 19 TGLGQAIAVGLAAAGAE 35 (247)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHcCCE
Confidence 48999999999999964
No 289
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=22.03 E-value=26 Score=23.57 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 23 ggiG~~la~~l~~~G~~ 39 (260)
T 3awd_A 23 QNIGLACVTALAEAGAR 39 (260)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 290
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=22.03 E-value=26 Score=23.83 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 26 ggiG~~~a~~l~~~G~~ 42 (278)
T 2bgk_A 26 GGIGETTAKLFVRYGAK 42 (278)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 291
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=21.94 E-value=26 Score=23.63 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 22 ggiG~~~a~~l~~~G~~ 38 (265)
T 2o23_A 22 SGLGLATAERLVGQGAS 38 (265)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 292
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=21.88 E-value=26 Score=23.37 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 17 ggiG~~~a~~l~~~G~~ 33 (244)
T 3d3w_A 17 KGIGRGTVQALHATGAR 33 (244)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 293
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}
Probab=21.84 E-value=31 Score=25.57 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=35.7
Q ss_pred hhCCCCCCCcccccCccHHH-----------HHhHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHHhh
Q psy6806 11 VSEPMGEKPVTELAGVGDVL-----------GKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETC 67 (89)
Q Consensus 11 v~ePMg~K~Vt~l~GIG~~l-----------g~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~~~ 67 (89)
|++-+|+.-+.=.|||++.- .....+.|-| |.|.|+.+.-..|...-.+-+++..
T Consensus 171 ir~~~~~~f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad--~iVvGr~I~~a~dp~~a~~~i~~~~ 236 (259)
T 3tfx_A 171 LHENIGDDFLYVTPGIRPAGNAKDDQSRVATPKMAKEWGSS--AIVVGRPITLASDPKAAYEAIKKEF 236 (259)
T ss_dssp HHHHHCSSSEEEECCCCCC-----------CHHHHHHTTCS--EEEECHHHHTSSSHHHHHHHHHHHH
T ss_pred HHhhcCCccEEEcCCcCCCCCCcCCccccCCHHHHHHcCCC--EEEEChHHhCCCCHHHHHHHHHHHH
Confidence 33445664555679999853 2345567776 7899999877777766555555543
No 294
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*
Probab=21.77 E-value=23 Score=26.17 Aligned_cols=53 Identities=15% Similarity=0.289 Sum_probs=34.0
Q ss_pred hhCCCCCCCcccccCccHHHHH-----------hHHhcCCchhhHhhhhhhhhhcCHHHHHHHHHH
Q psy6806 11 VSEPMGEKPVTELAGVGDVLGK-----------RLESKGFDKAYVVLGQFLLLKQNEELFVDWMKE 65 (89)
Q Consensus 11 v~ePMg~K~Vt~l~GIG~~lg~-----------~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WLk~ 65 (89)
|++.+|+.-+.=.||||+.-+. ...+.|-| |.|.|+.+.-..|...-.+-|++
T Consensus 189 iR~~~g~~fl~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad--~iVvGr~I~~a~dp~~a~~~i~~ 252 (255)
T 3ldv_A 189 LKQHLGREFKLVTPGIRPAGSEQGDQRRIMTPAQAIASGSD--YLVIGRPITQAAHPEVVLEEINS 252 (255)
T ss_dssp HHHHHCTTSEEEEECCCCTTSTTSSCSSSCCHHHHHHTTCS--EEEECHHHHTCSCHHHHHHHHHH
T ss_pred HHHhcCCCcEEEeCCcccCcCCccceeccCCHHHHHHcCCC--EEEECHHHhCCCCHHHHHHHHHH
Confidence 4445666555545999986433 24467877 88999998777676555444443
No 295
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...
Probab=21.65 E-value=24 Score=24.70 Aligned_cols=17 Identities=18% Similarity=0.559 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 33 ~gIG~aia~~L~~~G~~ 49 (288)
T 2x9g_A 33 KRIGRAIAVKLHQTGYR 49 (288)
T ss_dssp SHHHHHHHHHHHHHTCE
T ss_pred CHHHHHHHHHHHHCCCe
Confidence 58999999999999964
No 296
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=21.59 E-value=27 Score=23.23 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 17 ggiG~~la~~l~~~G~~ 33 (248)
T 2pnf_A 17 RGIGRAIAEKLASAGST 33 (248)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 297
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=21.53 E-value=24 Score=25.45 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=14.8
Q ss_pred Ccc-cccCccHHHHHhHHh-cCC
Q psy6806 19 PVT-ELAGVGDVLGKRLES-KGF 39 (89)
Q Consensus 19 ~Vt-~l~GIG~~lg~~L~~-~Gf 39 (89)
.++ .+||||+..+.-.-- -|+
T Consensus 130 ~L~~~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 130 FLVRNAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp HHHHHSTTCCHHHHHHHHHTTTC
T ss_pred HHHHhCCCCCHHHHHHHHHHcCC
Confidence 356 899999999865433 444
No 298
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=21.52 E-value=25 Score=24.56 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 37 ~GIG~aia~~l~~~G~~ 53 (277)
T 4fc7_A 37 SGIGFRIAEIFMRHGCH 53 (277)
T ss_dssp SHHHHHHHHHHHTTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 48999999999999973
No 299
>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}
Probab=21.52 E-value=27 Score=25.72 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=30.1
Q ss_pred cchHHHHhhhhCCCCCCCcccccCccHHHHHhHHh---cCCch----hhHhhhhhhhhhcCH
Q psy6806 2 STSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLES---KGFDK----AYVVLGQFLLLKQNE 56 (89)
Q Consensus 2 ~tS~Khr~Fv~ePMg~K~Vt~l~GIG~~lg~~L~~---~Gf~k----Ay~lLGqfL~l~k~~ 56 (89)
.|++.--.-|++-+++.. .=+||||+.-+ .+++ .|+|+ ++.+.|+=+.-..|.
T Consensus 178 at~~~e~~~ir~~~~~~~-~l~PGIg~qg~-tp~~a~~~G~d~~~~~~livvGR~I~~A~dp 237 (255)
T 3qw3_A 178 ATDPVALARVRARAPTLW-FLVPGIGAQGG-SLKASLDAGLRADGSGMLINVSRGLARAADP 237 (255)
T ss_dssp SSCHHHHHHHHHHCSSCC-EEECCC------CHHHHHHHHCCTTSCCEEEEESHHHHTSSCH
T ss_pred CCCHHHHHHHHHHCCCCe-EEECCcCCCCC-CHHHHHHcCCCcccCeeEEEeChhhcCCCCH
Confidence 344443444555566644 35799998643 4444 68884 458999987776554
No 300
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}
Probab=21.50 E-value=27 Score=24.53 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 39 ~gIG~aia~~L~~~G~~ 55 (276)
T 2b4q_A 39 RGIGQMIAQGLLEAGAR 55 (276)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 301
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=21.45 E-value=27 Score=24.30 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 21 ~gIG~aia~~l~~~G~~ 37 (281)
T 3svt_A 21 SGIGKGVAAGLVAAGAS 37 (281)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 302
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}
Probab=21.44 E-value=25 Score=23.32 Aligned_cols=17 Identities=35% Similarity=0.773 Sum_probs=15.0
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 11 ggiG~~~a~~l~~~G~~ 27 (245)
T 2ph3_A 11 RGIGRAIALRLAEDGFA 27 (245)
T ss_dssp SHHHHHHHHHHHTTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 48999999999999963
No 303
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.42 E-value=27 Score=18.52 Aligned_cols=11 Identities=27% Similarity=0.942 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH
Q psy6806 76 DCYNCLKDWCG 86 (89)
Q Consensus 76 dc~~cl~eWc~ 86 (89)
-|..|+.+|..
T Consensus 37 fC~~Ci~~~~~ 47 (58)
T 2ecj_A 37 FCKACITRWWE 47 (58)
T ss_dssp CCHHHHHHHTT
T ss_pred cCHHHHHHHHH
Confidence 58999999954
No 304
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2
Probab=21.40 E-value=27 Score=24.35 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 19 ~gIG~~ia~~l~~~G~~ 35 (270)
T 1yde_A 19 RGIGAGIVRAFVNSGAR 35 (270)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 305
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.39 E-value=30 Score=19.89 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHh
Q psy6806 75 GDCYNCLKDWCGE 87 (89)
Q Consensus 75 ~dc~~cl~eWc~~ 87 (89)
.-|..|+..|...
T Consensus 40 ~fC~~Ci~~~~~~ 52 (88)
T 2ct2_A 40 TICRQCLEKLLAS 52 (88)
T ss_dssp EEEHHHHHHHHHH
T ss_pred hhhHHHHHHHHHc
Confidence 3489999999864
No 306
>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}
Probab=21.36 E-value=16 Score=24.51 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=14.9
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|..
T Consensus 16 ~gIG~~~a~~l~~~G~~ 32 (223)
T 3uce_A 16 SGIGAELAKQLESEHTI 32 (223)
T ss_dssp SHHHHHHHHHHCSTTEE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999863
No 307
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=21.36 E-value=33 Score=24.75 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=15.5
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 18 ~gIG~~la~~l~~~G~~ 34 (319)
T 3ioy_A 18 NGVGIGLVRQLLNQGCK 34 (319)
T ss_dssp STHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHHHHHHCCCE
Confidence 68999999999999974
No 308
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=21.35 E-value=27 Score=24.06 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=15.0
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|+.
T Consensus 15 ~gIG~~~a~~l~~~G~~ 31 (281)
T 3m1a_A 15 SGFGRAIAEAAVAAGDT 31 (281)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 309
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=21.32 E-value=27 Score=24.23 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 31 ~gIG~aia~~l~~~G~~ 47 (253)
T 2nm0_A 31 RGIGLAIARAFADAGDK 47 (253)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 310
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=21.23 E-value=27 Score=24.99 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 51 ~GIG~aia~~la~~G~~ 67 (293)
T 3rih_A 51 KGIGRGIATVFARAGAN 67 (293)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 48999999999999973
No 311
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}
Probab=21.20 E-value=25 Score=24.13 Aligned_cols=17 Identities=35% Similarity=0.853 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 12 ~gIG~~ia~~l~~~G~~ 28 (258)
T 3a28_C 12 QGIGRGISEKLAADGFD 28 (258)
T ss_dssp SHHHHHHHHHHHHHTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 48999999999999974
No 312
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2
Probab=21.17 E-value=28 Score=24.28 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 16 ~gIG~aia~~l~~~G~~ 32 (263)
T 2a4k_A 16 SGIGRAALDLFAREGAS 32 (263)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 313
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}
Probab=21.11 E-value=31 Score=23.70 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 44 ggIG~~la~~L~~~G~~ 60 (279)
T 3ctm_A 44 GGIGWAVAEAYAQAGAD 60 (279)
T ss_dssp SSHHHHHHHHHHHHTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 48999999999999864
No 314
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=21.00 E-value=89 Score=20.73 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=34.2
Q ss_pred CCCcccccCccHHHHHhHHhcCCchhhHhhhhhhhhhcCHHHHHHHH
Q psy6806 17 EKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWM 63 (89)
Q Consensus 17 ~K~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLGqfL~l~k~~~~F~~WL 63 (89)
+.++.-.+||.+.-...+.+.|-| +++.|..+.-..|...--+-+
T Consensus 158 ~~pi~v~GGI~~~~~~~~~~aGad--~vvvGsaI~~~~dp~~~~~~~ 202 (207)
T 3ajx_A 158 RVPFSVAGGVKVATIPAVQKAGAE--VAVAGGAIYGAADPAAAAKEL 202 (207)
T ss_dssp TSCEEEESSCCGGGHHHHHHTTCS--EEEESHHHHTSSSHHHHHHHH
T ss_pred CCCEEEECCcCHHHHHHHHHcCCC--EEEEeeeccCCCCHHHHHHHH
Confidence 557888999999888888888876 788899987766654433333
No 315
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=20.96 E-value=31 Score=23.02 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=23.8
Q ss_pred CcccccCccHHHHHhHHhcCCchhhHhhhhhh
Q psy6806 19 PVTELAGVGDVLGKRLESKGFDKAYVVLGQFL 50 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLGqfL 50 (89)
.+..-.=||..+|+++.++|++++..=-|-|+
T Consensus 62 n~~AA~~vG~llA~ra~~~GI~~vvfDrgg~~ 93 (112)
T 3v2d_S 62 KTEVARQVGRALAEKALALGIKQVAFDRGPYK 93 (112)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCBCEEECTTSC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCCCc
Confidence 44455568999999999999998755445544
No 316
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=20.89 E-value=59 Score=21.60 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=17.9
Q ss_pred cccccCccHHHHHhHHh-cCCch
Q psy6806 20 VTELAGVGDVLGKRLES-KGFDK 41 (89)
Q Consensus 20 Vt~l~GIG~~lg~~L~~-~Gf~k 41 (89)
+|.+-|||+..+..+-+ .|+|.
T Consensus 18 Lt~I~GIG~~~A~~I~~~~gid~ 40 (114)
T 3r8n_M 18 LTSIYGVGKTRSKAILAAAGIAE 40 (114)
T ss_dssp GGGSTTCCHHHHHHHHHHTTCCT
T ss_pred HhhhcCcCHHHHHHHHHHcCcCc
Confidence 58899999999988554 78874
No 317
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=20.86 E-value=29 Score=23.43 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 17 ggiG~~la~~l~~~G~~ 33 (264)
T 2pd6_A 17 SGIGRAVSVRLAGEGAT 33 (264)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 318
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=20.81 E-value=79 Score=26.70 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=23.3
Q ss_pred HHHHhhhhCCCCCCCcccccCccHHHHHhHHhcCC
Q psy6806 5 QKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGF 39 (89)
Q Consensus 5 ~Khr~Fv~ePMg~K~Vt~l~GIG~~lg~~L~~~Gf 39 (89)
.+..-|+|. ..-+++|+|+....+|-++|.
T Consensus 433 ~~l~hf~sr-----~aldI~GLG~k~i~~L~~~g~ 462 (667)
T 1dgs_A 433 EAIRHYASR-----KAMDIEGLGEKLIERLLEKGL 462 (667)
T ss_dssp HHHHHHHST-----TSSCCTTCCHHHHHHHHHTTS
T ss_pred HHHHHHhcc-----cccCcCcCCHHHHHHHHHcCC
Confidence 355667764 445699999999999999875
No 319
>2ipq_X Hypothetical protein STY4665; structural genomics, unknown function, PSI, protein structur initiative; 2.20A {Salmonella typhi} SCOP: a.4.5.74
Probab=20.70 E-value=40 Score=23.02 Aligned_cols=12 Identities=25% Similarity=0.850 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhh
Q psy6806 56 EELFVDWMKETC 67 (89)
Q Consensus 56 ~~~F~~WLk~~~ 67 (89)
-+.|.+||++-+
T Consensus 8 Ge~Fl~WLk~gi 19 (135)
T 2ipq_X 8 GDLFWSWLRDGL 19 (135)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 468999999764
No 320
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2
Probab=20.68 E-value=29 Score=23.82 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 17 ~gIG~~ia~~l~~~G~~ 33 (267)
T 2gdz_A 17 QGIGRAFAEALLLKGAK 33 (267)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 321
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=20.67 E-value=29 Score=22.95 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=14.7
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 11 g~iG~~l~~~L~~~g~~ 27 (255)
T 2dkn_A 11 SGIGAALKELLARAGHT 27 (255)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHhCCCE
Confidence 48999999999999864
No 322
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=20.66 E-value=29 Score=23.58 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 24 ggiG~~la~~l~~~G~~ 40 (266)
T 1xq1_A 24 KGIGHAIVEEFAGFGAV 40 (266)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 323
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=20.58 E-value=27 Score=26.40 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=16.8
Q ss_pred Cccc-ccCccHHHHHhHHhcCCch
Q psy6806 19 PVTE-LAGVGDVLGKRLESKGFDK 41 (89)
Q Consensus 19 ~Vt~-l~GIG~~lg~~L~~~Gf~k 41 (89)
.+.. |||||+..+.-..--+|++
T Consensus 129 ~Ll~~LpGIG~kTA~~iL~~a~g~ 152 (287)
T 3n5n_X 129 TLQQLLPGVGRYTAGAIASIAFGQ 152 (287)
T ss_dssp HHHHHSTTCCHHHHHHHHHHHSCC
T ss_pred HHHHHcCCCCHHHHHHHHHHhcCC
Confidence 4555 9999999988766655544
No 324
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=20.56 E-value=13 Score=23.42 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=18.6
Q ss_pred cHHHHHhHHhcCCchhhHhhhhh
Q psy6806 27 GDVLGKRLESKGFDKAYVVLGQF 49 (89)
Q Consensus 27 G~~lg~~L~~~Gf~kAy~lLGqf 49 (89)
+...+..|.+.||+++|.|-|=|
T Consensus 95 s~~aa~~L~~~G~~~v~~l~GG~ 117 (129)
T 1tq1_A 95 SIKATTDLLHAGFTGVKDIVGGY 117 (129)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCH
T ss_pred HHHHHHHHHHcCCCCeEEeCCcH
Confidence 34677889999999999887765
No 325
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=20.44 E-value=29 Score=24.41 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 42 ~GIG~aia~~la~~G~~ 58 (276)
T 3r1i_A 42 TGIGKKVALAYAEAGAQ 58 (276)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 326
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=20.41 E-value=29 Score=24.21 Aligned_cols=17 Identities=29% Similarity=0.687 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 32 ~gIG~~ia~~l~~~G~~ 48 (277)
T 2rhc_B 32 SGIGLEIARRLGKEGLR 48 (277)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 327
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=20.36 E-value=29 Score=24.98 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 17 ~GIG~aia~~la~~Ga~ 33 (258)
T 4gkb_A 17 SGIGGAISMRLAEERAI 33 (258)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHcCCE
Confidence 48999999999999964
No 328
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=20.32 E-value=26 Score=21.44 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=17.8
Q ss_pred cHHHHHhHHhcCCchhhHhhhhh
Q psy6806 27 GDVLGKRLESKGFDKAYVVLGQF 49 (89)
Q Consensus 27 G~~lg~~L~~~Gf~kAy~lLGqf 49 (89)
+...+..|.+.|| ++|+|-|=|
T Consensus 68 s~~aa~~L~~~G~-~v~~l~GG~ 89 (108)
T 3gk5_A 68 SAAAVEFLSQLGL-NIVDVEGGI 89 (108)
T ss_dssp HHHHHHHHHTTTC-CEEEETTHH
T ss_pred HHHHHHHHHHcCC-CEEEEcCcH
Confidence 3467788999999 999988865
No 329
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Probab=20.21 E-value=30 Score=24.43 Aligned_cols=17 Identities=18% Similarity=0.536 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 19 ~GIG~aia~~la~~G~~ 35 (291)
T 1e7w_A 19 KRLGRSIAEGLHAEGYA 35 (291)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCe
Confidence 58999999999999964
No 330
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=20.20 E-value=30 Score=24.82 Aligned_cols=17 Identities=18% Similarity=0.409 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 37 ~GIG~aia~~la~~G~~ 53 (322)
T 3qlj_A 37 GGIGRAHALAFAAEGAR 53 (322)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 331
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=20.19 E-value=28 Score=23.42 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=23.4
Q ss_pred CcccccCccHHHHHhHHhcCCchhhHhhhhhh
Q psy6806 19 PVTELAGVGDVLGKRLESKGFDKAYVVLGQFL 50 (89)
Q Consensus 19 ~Vt~l~GIG~~lg~~L~~~Gf~kAy~lLGqfL 50 (89)
.+..-.=+|..+|+|+-++|+++++.=-|-|+
T Consensus 70 n~~AA~~vG~llA~Ral~~GI~~vvfDrgg~~ 101 (120)
T 1ovy_A 70 NIEAAKKVGELVAKRALEKGIKQVVFDRGGYL 101 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHHSSSCCCCCSTTCS
T ss_pred cHHHHHHHHHHHHHHHHHCCCCEEEEecCCcc
Confidence 34444558999999999999998765445443
No 332
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=20.18 E-value=39 Score=20.16 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=21.0
Q ss_pred CCCCCC-cccccCccHHHHHhHHhcCCch
Q psy6806 14 PMGEKP-VTELAGVGDVLGKRLESKGFDK 41 (89)
Q Consensus 14 PMg~K~-Vt~l~GIG~~lg~~L~~~Gf~k 41 (89)
|.|++. |..+.+ ++.+-++|.+.||..
T Consensus 8 ~~G~~~~I~~i~~-~~~~~~rL~~lGl~p 35 (81)
T 2k5l_A 8 KCGQTVKVVKLHG-TGALKRRIMDMGITR 35 (81)
T ss_dssp CTTCEEEEEEECS-SSHHHHHHHHHTCCT
T ss_pred CCcCEEEEEEEEC-CHHHHHHHHHCCCCC
Confidence 456653 677888 889999999999864
No 333
>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=20.17 E-value=30 Score=24.64 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 36 ~gIG~aia~~L~~~G~~ 52 (297)
T 1xhl_A 36 NGIGRSAAVIFAKEGAQ 52 (297)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999974
No 334
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=20.15 E-value=30 Score=24.62 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=15.2
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|+.
T Consensus 41 ~gIG~~la~~l~~~G~~ 57 (301)
T 3tjr_A 41 SGIGLATATEFARRGAR 57 (301)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 57999999999999964
No 335
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=20.12 E-value=30 Score=24.88 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=15.3
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|.+
T Consensus 56 ~GIG~aia~~la~~G~~ 72 (317)
T 3oec_A 56 RGQGRTHAVRLAQDGAD 72 (317)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCe
Confidence 58999999999999974
No 336
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=20.02 E-value=31 Score=23.31 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=15.1
Q ss_pred cCccHHHHHhHHhcCCc
Q psy6806 24 AGVGDVLGKRLESKGFD 40 (89)
Q Consensus 24 ~GIG~~lg~~L~~~Gf~ 40 (89)
-|||..++++|.++|++
T Consensus 17 ggiG~~~a~~l~~~G~~ 33 (261)
T 1gee_A 17 TGLGKSMAIRFATEKAK 33 (261)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999964
Done!