RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6806
(89 letters)
>d1ci4a_ a.60.5.1 (A:) Barrier-to-autointegration factor, BAF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 164 bits (416), Expect = 2e-55
Identities = 62/89 (69%), Positives = 80/89 (89%)
Query: 1 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFV 60
M+TSQKH++FV+EPMGEKPV LAG+G+VLGK+LE +GFDKAYVVLGQFL+LK++E+LF
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFR 60
Query: 61 DWMKETCQANAKQSGDCYNCLKDWCGEFL 89
+W+K+TC ANAKQS DC+ CL++WC FL
Sbjct: 61 EWLKDTCGANAKQSRDCFGCLREWCDAFL 89
>d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 209
Score = 29.0 bits (64), Expect = 0.048
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 15 MGEKPVTELAGVGDVLGKRLESKGFDKAY 43
+ E + E+ G+G VL +RL G K
Sbjct: 180 LNELDIDEIPGIGSVLARRLNELGIQKLR 208
>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 333
Score = 28.6 bits (63), Expect = 0.085
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 11 VSEPMGEKPVTELAGVGDVLGKRLESKGFDKAY 43
V + + + P+ +++G+G V K L++ G
Sbjct: 268 VMDFIKDLPIRKVSGIGKVTEKMLKALGIITCT 300
>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 186
Score = 25.2 bits (54), Expect = 1.2
Identities = 13/60 (21%), Positives = 20/60 (33%)
Query: 26 VGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETCQANAKQSGDCYNCLKDWC 85
VG L +RL G + V G + L+ + L M++ N G
Sbjct: 4 VGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAK 63
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human
(Homo sapiens) [TaxId: 9606]}
Length = 44
Score = 23.5 bits (51), Expect = 1.7
Identities = 8/27 (29%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 32 KRLESKGFDKAYVVLGQFLLLKQNEEL 58
+RL++ GF ++ +V+ + ++NE L
Sbjct: 9 ERLKALGFPES-LVIQAYFACEKNENL 34
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga
maritima [TaxId: 2336]}
Length = 180
Score = 24.4 bits (52), Expect = 2.2
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 17 EKPVTELAGVGDVLGKRLESKG 38
+ GVG K+L+ G
Sbjct: 9 STDIQYAKGVGPNRKKKLKKLG 30
>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 24.1 bits (51), Expect = 3.0
Identities = 12/61 (19%), Positives = 24/61 (39%)
Query: 26 VGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETCQANAKQSGDCYNCLKDWC 85
+G L +RL+ + + + G F L ++ V+ M+ AN + +
Sbjct: 5 LGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIK 64
Query: 86 G 86
G
Sbjct: 65 G 65
>d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1
[TaxId: 10298]}
Length = 615
Score = 24.0 bits (52), Expect = 3.7
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 44 VVLGQFLLLKQNEELFVDWMKETCQANAK---QSGDCYNCLKDW 84
+V GQ L + NE E C + G Y +++
Sbjct: 502 LVEGQ--LGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEY 543
>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 389
Score = 23.7 bits (50), Expect = 4.0
Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 8/70 (11%)
Query: 15 MGEKPVTELAGVGDVLGKRLESK-GFDKAYVVLGQFLLLKQNEELFVDWMKETCQANAKQ 73
G+ +T +G VLGK L +K E + D + + +
Sbjct: 297 CGKFEITSFWTLGGVLGKELIDVLDLPHEN-------SIKHIRETWPDNAGQLKEFLDAK 349
Query: 74 SGDCYNCLKD 83
Sbjct: 350 VKQSDYDRST 359
>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase
{Enterobacter cloacae [TaxId: 550]}
Length = 178
Score = 23.7 bits (50), Expect = 4.3
Identities = 13/63 (20%), Positives = 20/63 (31%)
Query: 26 VGDVLGKRLESKGFDKAYVVLGQFLLLKQNEELFVDWMKETCQANAKQSGDCYNCLKDWC 85
V D L RL G D + V G + L + + + AN + +
Sbjct: 5 VADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCK 64
Query: 86 GEF 88
G
Sbjct: 65 GFA 67
>d1bgka_ g.19.1.1 (A:) Sea anemone toxin k {Sea anemone
(Bunodosoma granulifera), BGK [TaxId: 31164]}
Length = 37
Score = 22.0 bits (46), Expect = 4.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 61 DWMKETCQANAKQSGDC 77
DW KET +AK G+C
Sbjct: 4 DWFKETACRHAKSLGNC 20
>d1myna_ g.3.7.4 (A:) Drosomycin {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 44
Score = 21.4 bits (45), Expect = 8.3
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 64 KETCQANAKQSGDCYNCLKDWC 85
+ C+ + SG C LK WC
Sbjct: 20 RRVCKEEGRSSGHCSPSLKCWC 41
>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 255
Score = 22.7 bits (47), Expect = 9.8
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 59 FVDWMKETCQANAKQSG 75
F +W+ + + +++ SG
Sbjct: 234 FREWIFQAIKTHSEASG 250
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.418
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 331,546
Number of extensions: 12940
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 13
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)