BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6807
(395 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P91929|NDUAA_DROME NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10,
mitochondrial OS=Drosophila melanogaster GN=ND42 PE=2
SV=2
Length = 407
Score = 310 bits (793), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 169/389 (43%), Positives = 236/389 (60%), Gaps = 18/389 (4%)
Query: 1 MSSILAVGLPKLLARGP---------GHHFPVLSVARF-ISSKHNADLRRPP---PYPYE 47
M+++ VGL +L++R + P R IS K R P PYPY+
Sbjct: 1 MTAVFRVGLVRLVSRATQSPNLLQAQTNALPAAFQQRCSISGKTMRGGPRVPKAAPYPYK 60
Query: 48 TRDFKFPWTLMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFY 107
T+ + + + T RF++NSK+I VEGPIA+GK++F K+LA+ELDM P ++D+ Y
Sbjct: 61 TKKYSVFNAIFDKTSKRFDENSKVICVEGPIAAGKSKFAKELAEELDMEYYPAVDLDLIY 120
Query: 108 KRG-DFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHML 166
+D R LD + + +SYD + FC DP H FQIRM LR+S Y+DAL H+L
Sbjct: 121 INSYGYDMRKLDPQLP-PSCRSYDVRNFCLDPSHDLAAQFQIRMYMLRYSQYIDALQHVL 179
Query: 167 STGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226
STGQG +++R P+SDF+F+EAM + GY+++ + +Y E+ + T+ L KPHLVIYLD+PV
Sbjct: 180 STGQGVVLERSPYSDFVFMEAMFRQGYLSRGARSVYNELRQNTIGELLKPHLVIYLDLPV 239
Query: 227 SKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEV 286
VK+ +K RN +EV S +F+D YL ++E LYK YL IS +ELL+YDW+ GG+ EV
Sbjct: 240 DAVKKQIKARNVDYEVQSKVFSDAYLSDLEQLYKQQYLKDISTHAELLIYDWTAGGETEV 299
Query: 287 VVEDIERIDFDHY--DHFSNKMREWRQLTTKEWNNLRMLYADEKSDLMTAFNTVERYDCP 344
VVEDIERIDF+ + D + KM +WR EW R+ Y EK DLM FN V R+D P
Sbjct: 300 VVEDIERIDFNQFEADIHNKKMLDWRFPLEAEWCEARIKYCHEKPDLMNYFN-VPRFDVP 358
Query: 345 ELAYTGDDMMEIEEKLSKTPEFYYTKGFN 373
EL + DD + P Y G+N
Sbjct: 359 ELVRSADDGKVWRDVWFNAPGMKYRPGYN 387
>sp|Q561S0|NDUAA_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10,
mitochondrial OS=Rattus norvegicus GN=Ndufa10 PE=1 SV=1
Length = 355
Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 173/326 (53%), Gaps = 21/326 (6%)
Query: 57 LMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRS 116
L + T + ++ S++I V+G I SGK + + +A++L M P A + + D R
Sbjct: 45 LGDKTTKKLHEYSRVITVDGNICSGKNKLARDIAEQLGMKHYPEAGIQ-YSSSTTGDGRP 103
Query: 117 LDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIR--MLQLRFSVYVDALAHMLSTGQGAIV 174
LD E+S S + F +PK +++++ + R Y DAL H+LSTGQG ++
Sbjct: 104 LDIEFSG----SCSLEKFYDNPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVL 159
Query: 175 QRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVK 234
+R +SDF+F+EAM G+I K+ D Y EI R TLP PH VIY+D+PVS+++ ++
Sbjct: 160 ERSIYSDFVFLEAMYNQGFIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVSEIQSRIQ 219
Query: 235 KRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294
K+ +P E+ YL +IED YK +LP++S+ E+LVY + D VVEDIE +
Sbjct: 220 KKGDPHEMK---VTSAYLQDIEDAYKKTFLPKMSEICEVLVYSSWEAEDSTKVVEDIEYL 276
Query: 295 DFDHYDHFSNKMREWRQLTTKEWNNLRMLYADEKSDLMTAFNTVERYDCPELAYTGDDMM 354
+++ W + + ++NLRML D++ L + TV Y PE+
Sbjct: 277 NYNK--------GPWLKQDDRTFHNLRMLVQDKREVL--NYTTVPVY-LPEITIGAHQGS 325
Query: 355 EIEEKLSKTPEFYYTKGFNPVKDNVW 380
I + + P Y G+N + W
Sbjct: 326 RIYDSFRELPGRKYAPGYNADVGDKW 351
>sp|Q99LC3|NDUAA_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10,
mitochondrial OS=Mus musculus GN=Ndufa10 PE=1 SV=1
Length = 355
Score = 171 bits (434), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 172/326 (52%), Gaps = 21/326 (6%)
Query: 57 LMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRS 116
L + T + ++ S++I V+G I SGK + K++A +L M P A + + D R
Sbjct: 45 LGDKTTKKLHEYSRVITVDGNICSGKNKLAKEIAQQLGMKHYPEAGIQ-YSSTTTGDGRP 103
Query: 117 LDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIR--MLQLRFSVYVDALAHMLSTGQGAIV 174
LD E+S S + F DPK +++++ + R Y DAL H+LSTGQG ++
Sbjct: 104 LDIEFSG----SCSLEKFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQGVVL 159
Query: 175 QRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVK 234
+R +SDF+F+EAM GYI K+ D Y EI R TLP PH VIY+D+PV +V+ ++
Sbjct: 160 ERSIYSDFVFLEAMYNQGYIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVPEVQSRIQ 219
Query: 235 KRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294
K+ +P E+ YL +IE+ YK +LP++S+ E+LVYD + DP VVEDIE +
Sbjct: 220 KKGDPHEMK---VTSAYLQDIENAYKKTFLPKMSEMCEVLVYDSWEAEDPTKVVEDIEYL 276
Query: 295 DFDHYDHFSNKMREWRQLTTKEWNNLRMLYADEKSDLMTAFNTVERYDCPELAYTGDDMM 354
++ W + ++ LRML D K++++ + T+ Y PE+
Sbjct: 277 KYNK--------GPWLKQDDWTFHYLRMLVQD-KTEVLN-YTTIPVY-LPEITIGAHQGS 325
Query: 355 EIEEKLSKTPEFYYTKGFNPVKDNVW 380
I + P Y G+N + W
Sbjct: 326 RIYNSFRELPGRKYAPGYNAEVGDKW 351
>sp|Q0MQB6|NDUAA_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFA10 PE=2
SV=1
Length = 355
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 167/328 (50%), Gaps = 21/328 (6%)
Query: 55 WTLMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDW 114
+ L + R + S++I V+G I +GK + K++A++L P A + + D
Sbjct: 43 FLLGDKASKRLTERSRVITVDGNICTGKGKLAKEIAEKLGFKHFPEAGIH-YPDSTTGDG 101
Query: 115 RSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIR--MLQLRFSVYVDALAHMLSTGQGA 172
+ L A+++ + + F DP+ +++++ + R Y DAL H+L+TGQG
Sbjct: 102 KPLAADYNG----NCSLEKFYDDPRSNDGNSYRLQSWLYSSRLLQYSDALEHLLTTGQGV 157
Query: 173 IVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKEN 232
+++R FSDF+F++AM G+I K+ D Y E+ T+ PHLVIY+D+PV +V+
Sbjct: 158 VLERSIFSDFVFLDAMYNQGFIRKQCVDHYNEVKSVTICDYLPPHLVIYIDVPVPEVQRR 217
Query: 233 VKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIE 292
++K+ +P E+ YL +IE+ YK +LP++S+ E+L Y + D + VVEDIE
Sbjct: 218 IQKKGDPHEMK---ITSAYLQDIENAYKKTFLPEMSEKCEVLQYSAREAQDSKKVVEDIE 274
Query: 293 RIDFDHYDHFSNKMREWRQLTTKEWNNLRMLYADEKSDLMTAFNTVERYDCPELAYTGDD 352
+ FD W + + +LR+L D+ L + ++ + PE+
Sbjct: 275 YLKFDK--------GPWLKQDNRTLYHLRLLVQDKFEVL--NYTSIPIF-LPEVTIGAHQ 323
Query: 353 MMEIEEKLSKTPEFYYTKGFNPVKDNVW 380
+ + + P Y+ G+N + W
Sbjct: 324 TDRVLHQFRELPGRKYSPGYNTEVGDKW 351
>sp|O95299|NDUAA_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10,
mitochondrial OS=Homo sapiens GN=NDUFA10 PE=1 SV=1
Length = 355
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 167/329 (50%), Gaps = 23/329 (6%)
Query: 55 WTLMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDW 114
+ L + R + S++I V+G I +GK + K++A++L P A + + D
Sbjct: 43 FLLGDKASKRLTERSRVITVDGNICTGKGKLAKEIAEKLGFKHFPEAGIH-YPDSTTGDG 101
Query: 115 RSLDAEW-SNENLKSY--DEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQG 171
+ L ++ N +L+ + D ++ + + + R+LQ Y DAL H+L+TGQG
Sbjct: 102 KPLATDYNGNCSLEKFYDDPRSNDGNSYRLQSWLYSSRLLQ-----YSDALEHLLTTGQG 156
Query: 172 AIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKE 231
+++R FSDF+F+EAM G+I K+ D Y E+ T+ PHLVIY+D+PV +V+
Sbjct: 157 VVLERSIFSDFVFLEAMYNQGFIRKQCVDHYNEVKSVTICDYLPPHLVIYIDVPVPEVQR 216
Query: 232 NVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDI 291
++K+ +P E+ YL +IE+ YK +LP++S+ E+L Y + D + VVEDI
Sbjct: 217 RIQKKGDPHEMK---ITSAYLQDIENAYKKTFLPEMSEKCEVLQYSAREAQDSKKVVEDI 273
Query: 292 ERIDFDHYDHFSNKMREWRQLTTKEWNNLRMLYADEKSDLMTAFNTVERYDCPELAYTGD 351
E + FD W + + +LR+L D+ L + ++ + PE+
Sbjct: 274 EYLKFDK--------GPWLKQDNRTLYHLRLLVQDKFEVL--NYTSIPIF-LPEVTIGAH 322
Query: 352 DMMEIEEKLSKTPEFYYTKGFNPVKDNVW 380
+ + + P Y+ G+N + W
Sbjct: 323 QTDRVLHQFRELPGRKYSPGYNTEVGDKW 351
>sp|Q0MQB7|NDUAA_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10,
mitochondrial OS=Pan troglodytes GN=NDUFA10 PE=2 SV=1
Length = 355
Score = 145 bits (367), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 167/329 (50%), Gaps = 23/329 (6%)
Query: 55 WTLMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDW 114
+ L + R + S++I V+G I +GK + K++A++L P A + + D
Sbjct: 43 FLLGDKASKRLTERSRVITVDGNICTGKGKLAKEIAEKLGFKHFPEAGIH-YPDSTTGDG 101
Query: 115 RSLDAEW-SNENLKSY--DEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQG 171
+ L A++ N +L+ + D ++ + + + R+LQ Y DAL H+L+TGQG
Sbjct: 102 KPLAADYNGNCSLEKFYDDPRSNDGNSYRLQSWLYSSRLLQ-----YSDALEHLLTTGQG 156
Query: 172 AIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKE 231
+++R FSDF+F+EAM G+I K+ D Y E+ T+ PHLVIY+D+PV +V+
Sbjct: 157 VVLERSIFSDFVFLEAMYNQGFIRKQCVDHYNEVKSVTICDYLPPHLVIYIDVPVPEVQR 216
Query: 232 NVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDI 291
++K+ +P E+ YL +IE+ YK +LP++S+ E+L Y + D + VEDI
Sbjct: 217 RIQKKGDPHEMK---ITSAYLQDIENAYKKTFLPEMSEKCEVLQYSAREAQDSKKAVEDI 273
Query: 292 ERIDFDHYDHFSNKMREWRQLTTKEWNNLRMLYADEKSDLMTAFNTVERYDCPELAYTGD 351
E + FD W + + +LR+L D+ L + ++ + PE+
Sbjct: 274 EYLKFDK--------GPWLKQDNRTLYHLRLLVQDKFEVL--NYTSIPIF-LPEVTIGAH 322
Query: 352 DMMEIEEKLSKTPEFYYTKGFNPVKDNVW 380
+ + + P Y+ G+N + W
Sbjct: 323 QTDRVLHQFRELPGRKYSPGYNTEVGDKW 351
>sp|P0CB90|NDUAA_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10,
mitochondrial OS=Pongo pygmaeus GN=NDUFA10 PE=2 SV=1
Length = 355
Score = 145 bits (367), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 166/328 (50%), Gaps = 21/328 (6%)
Query: 55 WTLMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDW 114
+ L + R ++S++I V+G I +GK + K++A++L P A + + D
Sbjct: 43 FLLGDKASKRLTEHSRVITVDGNICTGKGKLAKEIAEKLGFKHFPEAGIH-YPDSITGDG 101
Query: 115 RSLDAEWSNENLKSYDEKTFCKDPKH--FHTIAFQIRMLQLRFSVYVDALAHMLSTGQGA 172
+ L A+++ + + F DP+ +T Q + R Y DAL H+L+TGQG
Sbjct: 102 KPLAADYNG----NCSLEKFYDDPRSNDGNTYRLQSWLYSSRLLQYSDALEHLLTTGQGV 157
Query: 173 IVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKEN 232
+++R FSDF+F++AM G+I K+ D Y E+ T+ PHLVIY+D+PV +V+
Sbjct: 158 VLERSIFSDFVFLDAMYNQGFIRKQCVDHYNEVKSVTICDYLPPHLVIYIDVPVPEVQRR 217
Query: 233 VKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIE 292
++K+ +P E+ YL +IE+ YK +LP++S+ E+L Y + D + VVEDIE
Sbjct: 218 IQKKGDPHEMK---ITSAYLQDIENAYKKTFLPEMSEKCEVLQYSAREAQDSKKVVEDIE 274
Query: 293 RIDFDHYDHFSNKMREWRQLTTKEWNNLRMLYADEKSDLMTAFNTVERYDCPELAYTGDD 352
+ FD W + + +LR+L D+ L + ++ + PE+
Sbjct: 275 YLKFDK--------GPWLKQDNRTLYHLRLLVQDKFEVL--NYTSIPIF-LPEVTIGAHQ 323
Query: 353 MMEIEEKLSKTPEFYYTKGFNPVKDNVW 380
+ + + P Y+ G+N + W
Sbjct: 324 TDRVLHQFRELPGRKYSPGYNTEVGDKW 351
>sp|P0CB89|NDUAA_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10,
mitochondrial OS=Pongo abelii GN=NDUFA10 PE=2 SV=1
Length = 355
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 164/328 (50%), Gaps = 21/328 (6%)
Query: 55 WTLMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDW 114
+ L + R + S++I V+G I +GK + K++A++L P A + + D
Sbjct: 43 FLLGDKASKRLTERSRVITVDGNICTGKGKLAKEIAEKLGFKHFPEAGIH-YPDSITGDG 101
Query: 115 RSLDAEWSNENLKSYDEKTFCKDPKH--FHTIAFQIRMLQLRFSVYVDALAHMLSTGQGA 172
+ L A+++ + + F DP+ +T Q + R Y DAL H+L+TGQG
Sbjct: 102 KPLAADYNG----NCSLEKFYDDPRSNDGNTYRLQSWLYSSRLLQYSDALEHLLTTGQGV 157
Query: 173 IVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKEN 232
+++R FSDF+F++AM G+I K+ D Y E+ T+ PHLVIY+D+PV +V+
Sbjct: 158 VLERSIFSDFVFLDAMYNQGFIRKQCVDHYNEVKSVTICDYLPPHLVIYIDVPVPEVQRR 217
Query: 233 VKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIE 292
++K+ +P E+ YL +IE+ YK +LP++S+ E+L Y + D + VVEDIE
Sbjct: 218 IQKKGDPHEMK---ITSAYLQDIENAYKKTFLPEMSEKCEVLQYSAREAQDSKKVVEDIE 274
Query: 293 RIDFDHYDHFSNKMREWRQLTTKEWNNLRMLYADEKSDLMTAFNTVERYDCPELAYTGDD 352
+ FD W + +LR+L D+ L + ++ + PE+
Sbjct: 275 YLKFDK--------GPWLKQDNHTLYHLRLLVQDKFEVL--NYTSIPVF-LPEVTIGAHQ 323
Query: 353 MMEIEEKLSKTPEFYYTKGFNPVKDNVW 380
+ + + P Y+ G+N + W
Sbjct: 324 TDRVLHQFRELPGRKYSPGYNTEVGDKW 351
>sp|P34942|NDUAA_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10,
mitochondrial OS=Bos taurus GN=NDUFA10 PE=1 SV=1
Length = 343
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 171/330 (51%), Gaps = 21/330 (6%)
Query: 53 FPWTLMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDF 112
+ L E + + SK+I V+G I SGK++ K++A++L + P A + +
Sbjct: 29 LAYILGEKATKKMTEKSKLITVDGNICSGKSKLAKEIAEKLGLKHFPEAGIH-YVDSTTG 87
Query: 113 DWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIR--MLQLRFSVYVDALAHMLSTGQ 170
D + L ++S + + F DPK +++++ + R Y DAL H+LSTGQ
Sbjct: 88 DGKPLPVQFSG----NCSLEKFYDDPKSNDGNSYRLQAWLYASRLLQYADALEHLLSTGQ 143
Query: 171 GAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVK 230
G +++R +SDF+F+EAM + G+I K+ D Y ++ + T+ PH+V+Y+D+PV +V+
Sbjct: 144 GVVLERSIYSDFVFLEAMYRQGFIRKQCVDHYNQVKKVTICEYLPPHVVVYVDVPVPEVQ 203
Query: 231 ENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVED 290
++K+ NP E+ YL +IE+ YK +LP++S+ E+L Y + D E VVED
Sbjct: 204 SRIQKKGNPHEMK---ITSAYLQDIENAYKGTFLPEMSEKCEVLQYSAWEAQDAEKVVED 260
Query: 291 IERIDFDHYDHFSNKMREWRQLTTKEWNNLRMLYADEKSDLMTAFNTVERYDCPELAYTG 350
IE + +D W + + LRML D+ L + ++ + PE+
Sbjct: 261 IEYLKYDK--------GPWLDQNDRNLHKLRMLVQDKLEVL--NYTSIPVF-LPEVTVGA 309
Query: 351 DDMMEIEEKLSKTPEFYYTKGFNPVKDNVW 380
++ ++ ++ P Y G+N + W
Sbjct: 310 HQSDQVFQEFTELPGRKYRAGYNEDVGDKW 339
>sp|Q54UT2|DGK_DICDI Deoxyguanosine kinase OS=Dictyostelium discoideum GN=dgk PE=1 SV=2
Length = 285
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 29/233 (12%)
Query: 60 DTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDM-IALPPANMDMFYKRGDFDWRSLD 118
+T ++ N SKII++EG I++GKT KL D L + L P + +
Sbjct: 23 NTTNKVNNFSKIIILEGNISAGKTYLSSKLGDLLGYKVFLEPTATNPYLS---------- 72
Query: 119 AEWSNENLKSYDEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCP 178
F K+P + I Q +L R++ +++AL + L QG I+ R
Sbjct: 73 --------------LFYKEPSKYALI-MQKWLLNQRYNTFLNALQYSLENEQGVILDRSV 117
Query: 179 FSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNN 238
+SD++F E G I+ Y I L + P++ ++LD+ + + ++ R
Sbjct: 118 YSDWVFAENCRSEGLISAEGFKEYNSIRDRFLSNIPIPNVTLFLDVDPKQCLQRIQNRKR 177
Query: 239 PWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDI 291
E + P+ YL +++ YK + S S +++ DW++ GD +V+ +I
Sbjct: 178 DCEQSIPL---SYLSGLDNCYKKFLIEMKSKGSNVIILDWNNFGDINLVLNEI 227
>sp|Q54YL2|DAK_DICDI Deoxyadenosine kinase OS=Dictyostelium discoideum GN=dak PE=1 SV=1
Length = 245
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 32/221 (14%)
Query: 72 IVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDE 131
I + G I +GKT L L++ +D Y
Sbjct: 24 IAISGLIGAGKTTLAVALGKVLNLPTYFEEVIDNLYL----------------------- 60
Query: 132 KTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKC 191
+ F KDPK + QI +L RF ++ +G + R + D +F + +++
Sbjct: 61 QDFYKDPKKYG-FQLQIYLLNSRFQ----QQQQIIWQARGGVQDRTIYEDSVFAKMLNES 115
Query: 192 GYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKY 251
G + R + Y ++ + + +P L+I+LD+ K E +K RN E + + +Y
Sbjct: 116 GLLDDRDYNTYCKLFQNLSNFMRRPDLIIHLDVSPEKSLERIKLRNRDCEKDVSL---EY 172
Query: 252 LHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIE 292
L + + Y + +L IS ++ +WS+ DPE + + I+
Sbjct: 173 LQNLYNAY-HEFLQDISRYIPVIRINWSEFVDPEQLAQMIK 212
>sp|P0C1G0|DGK2_LACAC Deoxyguanosine kinase OS=Lactobacillus acidophilus (strain ATCC
700396 / NCK56 / N2 / NCFM) GN=LBA1950 PE=3 SV=2
Length = 228
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 77/195 (39%), Gaps = 40/195 (20%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYD 130
+IV+ GPI +GK+ L+ L P FY+ D N L
Sbjct: 3 VIVLSGPIGAGKSSLTGILSKYL---GTKP-----FYESVD----------DNPVLP--- 41
Query: 131 EKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDK 190
F DPK + Q+ L RF +AL T ++ R + D +F +
Sbjct: 42 --LFYADPKKY-AFLLQVYFLNTRFHSIKNAL-----TQDNNVLDRSIYEDALFFQMNAD 93
Query: 191 CGYITKRHKDIYYEITRFTLPPLFK-----PHLVIYLDIPVSKVKENVKKRNNPWEVNSP 245
G T D YYE+ + L + P L++++++ + + +KKR P+E S
Sbjct: 94 IGRATSEEVDTYYELLHNMMGELDRMPKKNPDLLVHINVSYDTMIKRIKKRGRPYEQLS- 152
Query: 246 IFNDKYLHEIEDLYK 260
Y +ED YK
Sbjct: 153 -----YDSTLEDYYK 162
>sp|Q74HC2|DGK2_LACJO Deoxyguanosine kinase OS=Lactobacillus johnsonii (strain CNCM
I-12250 / La1 / NCC 533) GN=LJ_1825 PE=1 SV=3
Length = 224
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 36/188 (19%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYD 130
+IV+ GPI +GK+ L+ L + FY+ D N L
Sbjct: 3 VIVLSGPIGAGKSSLTGILSKYL--------GTNPFYESVD----------DNPVLP--- 41
Query: 131 EKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDK 190
F ++PK + Q+ L RF AL T ++ R + D +F +
Sbjct: 42 --LFYENPKKY-AFLLQVYFLNTRFRSIKSAL-----TDDNNVLDRSIYEDALFFQMNAD 93
Query: 191 CGYITKRHKDIYYEITRFTLPPLFK-----PHLVIYLDIPVSKVKENVKKRNNPWEVNS- 244
G T D YYE+ + L + P L++++D+ + + ++KR +E S
Sbjct: 94 IGRATPEEVDTYYELLHNMMSELDRMPKKNPDLLVHIDVSYDTMLKRIQKRGRNYEQLSY 153
Query: 245 -PIFNDKY 251
P D Y
Sbjct: 154 DPTLEDYY 161
>sp|P37530|DGK_BACSU Deoxyguanosine kinase OS=Bacillus subtilis (strain 168) GN=dgk PE=1
SV=1
Length = 207
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 94/244 (38%), Gaps = 68/244 (27%)
Query: 72 IVVEGPIASGKTEFCKKLADELDMIALPPAN--------MDMFYKRGDFDWRSLDAEWSN 123
I +EGPI +GKT L+ + P N +D FY
Sbjct: 7 IAIEGPIGAGKTTLATMLSQKF---GFPMINEIVEDNPYLDKFY---------------- 47
Query: 124 ENLKSYDEKTFCKDPKHFHTIAFQIRMLQL--RFSVYVDALAHMLSTGQGAIVQRCPFSD 181
+N+K + +FQ+ M L R+ D H L GQ I + +
Sbjct: 48 DNIKEW---------------SFQLEMFFLCHRYKQLEDTSDHFLKKGQPVIADYHIYKN 92
Query: 182 FIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNPWE 241
IF E + +++K IY+ +T LP KP+ +IY+ + + ++KR P+E
Sbjct: 93 VIFAERT-LSPHQLEKYKKIYHLLTD-DLP---KPNFIIYIKASLPTLLHRIEKRGRPFE 147
Query: 242 VNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFDHYDH 301
+IE +YL Q+ E+ + + DPE+ V +D D D
Sbjct: 148 -----------KKIE----TSYLEQLISDYEVAIKQLQE-ADPELTV---LTVDGDSKDF 188
Query: 302 FSNK 305
NK
Sbjct: 189 VLNK 192
>sp|Q9J579|DCK2_FOWPN Probable deoxycytidine kinase FPV151 OS=Fowlpox virus (strain NVSL)
GN=FPV151 PE=3 SV=1
Length = 235
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 63/156 (40%), Gaps = 29/156 (18%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSY 129
K I +EG I++GK+ L+D + P +W NL
Sbjct: 24 KKISIEGNISAGKSTLINILSDNGYNVVQEPL-----------------EQWRGNNLLD- 65
Query: 130 DEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIV-QRCPFSD-FIFIEA 187
KDP + FQ R Y+DAL + +G I+ +R FSD +IF A
Sbjct: 66 ---KLYKDPSRW-AYTFQSHAFWTRTKTYIDAL----NKNKGNIILERSVFSDKYIFATA 117
Query: 188 MDKCGYITKRHKDIYYEITRFTLPPL-FKPHLVIYL 222
+ GYI +IY E +++ + K +IYL
Sbjct: 118 LHDIGYIDDTEWNIYNEYSKWMTEFMDIKIDGIIYL 153
>sp|Q82WE9|SELU_NITEU tRNA 2-selenouridine synthase OS=Nitrosomonas europaea (strain ATCC
19718 / NBRC 14298) GN=selU PE=3 SV=1
Length = 385
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 45 PYETRDFKFPWTLMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADE---LDMIAL 98
P T +K + T DRF+++ K++V+ GP SGKT +++ LD+ AL
Sbjct: 120 PLITGGYKRARQFLISTIDRFSEHRKLLVITGPTGSGKTRLIHDISNSHPVLDIEAL 176
>sp|Q0AFI5|SELU_NITEC tRNA 2-selenouridine synthase OS=Nitrosomonas eutropha (strain C91)
GN=selU PE=3 SV=1
Length = 388
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 45 PYETRDFKFPWTLMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADE---LDMIAL 98
P +K + +T DRF++N ++V+ GP SGKT+ +++ + LD+ AL
Sbjct: 120 PLIIGGYKQARQFLINTIDRFSENHTLLVITGPTGSGKTQLIQEIRNSYPVLDIEAL 176
>sp|Q4FPN1|MIAA_PELUB tRNA dimethylallyltransferase OS=Pelagibacter ubique (strain
HTCC1062) GN=miaA PE=3 SV=1
Length = 313
Score = 35.8 bits (81), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 65 FNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYK 108
++ SKII++ GP ASGK+ F K+A +++ + +M ++ K
Sbjct: 1 MDKQSKIILISGPTASGKSNFAVKIAKKIEGEIINADSMQVYKK 44
>sp|Q54LE6|ABCC5_DICDI ABC transporter C family member 5 OS=Dictyostelium discoideum
GN=abcC5 PE=3 SV=1
Length = 1460
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 47 ETRDFKFPWTLMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDM 95
E ++ + ++L ++T + + +++V GP+ SGK+ FC+ L E+++
Sbjct: 565 EKKEVQVSFSL-KNTSCQVKEKGSLLMVIGPVGSGKSSFCQALLGEMEL 612
>sp|B8CX96|MIAA_HALOH tRNA dimethylallyltransferase OS=Halothermothrix orenii (strain H
168 / OCM 544 / DSM 9562) GN=miaA PE=3 SV=1
Length = 328
Score = 35.4 bits (80), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
Query: 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLK 127
NS +IV+ GP A GKT +LA +++ + +M ++ D D + A N+
Sbjct: 17 NSTLIVILGPTAVGKTSLSLQLARDINGEIISADSMQIY---KDMDIGTAKASQKERNII 73
Query: 128 SYDEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEA 187
+ K + F +Q + L + +L G G + R F+F E
Sbjct: 74 PHYMIDIIKPDQEFSVAEYQAMVDNLIPGIVYRNKVPILVGGTGLYI-RAVIEGFLFPE- 131
Query: 188 MDK 190
MDK
Sbjct: 132 MDK 134
>sp|A5GEV6|MIAA2_GEOUR tRNA dimethylallyltransferase 2 OS=Geobacter uraniireducens (strain
Rf4) GN=miaA2 PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 58 MEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMF 106
M D ED+ K+I++ GP ASGKTE +LA+ D + +M ++
Sbjct: 1 MVDGEDKI----KLIIIVGPTASGKTELAVRLAERFDGEIVNADSMQVY 45
>sp|B2TIB7|MIAA_CLOBB tRNA dimethylallyltransferase OS=Clostridium botulinum (strain
Eklund 17B / Type B) GN=miaA PE=3 SV=1
Length = 309
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYK 108
KI+V+ GP A GKTE KLA++L+ L +M ++ K
Sbjct: 4 KILVLGGPTAVGKTELSIKLAEKLNGEILSADSMQIYKK 42
>sp|B6YQT8|MIAA1_AZOPC tRNA dimethylallyltransferase 1 OS=Azobacteroides
pseudotrichonymphae genomovar. CFP2 GN=miaA1 PE=3 SV=1
Length = 306
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENL 126
Q ++I V GP ASGKT F +LA+EL+ + + ++ + LD
Sbjct: 4 QEYELITVLGPTASGKTAFATRLANELNSEIISADSRQVYRNMTIGTGKDLDNYIIEGKF 63
Query: 127 KSYDEKTFCKDPKHFHTIAFQ 147
Y C+ + ++ FQ
Sbjct: 64 IPYHLIDICQAGEKYNVFRFQ 84
>sp|Q8T191|UGGG_DICDI Probable UDP-glucose:glycoprotein glucosyltransferase A
OS=Dictyostelium discoideum GN=ggtA PE=1 SV=2
Length = 1681
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 210 LPPLFKPHLVIYLDIPVSKVKENV------KKRNNPW--EVNSPIFNDKYLHEIEDLY-K 260
L PLFK + L ++ E + K N P+ ++NS I N+KY H I + +
Sbjct: 731 LKPLFKESI---LSTTTAQYYETILTSSYWKDNNLPFLKKLNSMISNEKYSHLITNSKNR 787
Query: 261 NNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFDHYDHFSNKMREWRQLTTKEWNNL 320
N + + LL + ++ D + ++ I DFDHY+ + RQL E N
Sbjct: 788 NQEVDAQNVLKNLLYFRNNENKDEQNLLNLIVIGDFDHYNTRDISLELLRQLEKGELKNC 847
Query: 321 RMLYADEKSDLMTAFNTV 338
++ + D+ + NT
Sbjct: 848 KLTFISNPIDINSVVNTA 865
>sp|P0C1F9|DGK1_LACAC Deoxyadenosine kinase OS=Lactobacillus acidophilus (strain ATCC
700396 / NCK56 / N2 / NCFM) GN=LBA1949 PE=3 SV=2
Length = 215
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 93/236 (39%), Gaps = 40/236 (16%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSY 129
++IV+ GPI +GK+ LA+ L A FY+ D SN L Y
Sbjct: 3 QVIVLSGPIGAGKSSLTSILAEHLGTQA--------FYEGVD----------SNPVLPLY 44
Query: 130 DEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMD 189
KD K + T +L R + A+ + ++ R + D +F +
Sbjct: 45 -----YKDMKRY-TFLLNTYLLNHRLAQINQAIQE-----KNSVSDRSIYEDALFFKMNA 93
Query: 190 KCGYITKRHKDIYYEITRFTLP-----PLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNS 244
IY ++ + P KP L+IY+ + + + + +KKR +E S
Sbjct: 94 DSSVADPTEFKIYNDLLENMMEDTPGNPSKKPDLLIYIHVSLDTMLKRIKKRGRSFEQIS 153
Query: 245 --PIFNDKY---LHEIEDLYKN-NYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294
P D Y L E Y+N N P+I + + L + + EV+ E E++
Sbjct: 154 TDPSLKDYYARLLKYYEPWYENYNASPKIMINGDKLDFVTNMNAQKEVLKEIDEKL 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,522,240
Number of Sequences: 539616
Number of extensions: 7339046
Number of successful extensions: 21659
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 21606
Number of HSP's gapped (non-prelim): 45
length of query: 395
length of database: 191,569,459
effective HSP length: 120
effective length of query: 275
effective length of database: 126,815,539
effective search space: 34874273225
effective search space used: 34874273225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)