Query psy6807
Match_columns 395
No_of_seqs 291 out of 1957
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 18:52:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6807.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6807hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3877|consensus 100.0 1.6E-83 3.4E-88 599.5 26.2 359 23-386 24-388 (393)
2 cd02030 NDUO42 NADH:Ubiquinone 100.0 3.1E-33 6.8E-38 261.9 21.5 215 71-295 1-219 (219)
3 COG1428 Deoxynucleoside kinase 100.0 3.1E-29 6.8E-34 229.1 18.1 195 69-294 4-209 (216)
4 cd01673 dNK Deoxyribonucleosid 99.9 2.5E-26 5.5E-31 210.2 19.6 185 71-279 1-185 (193)
5 KOG4235|consensus 99.9 6.4E-23 1.4E-27 184.3 13.4 184 71-278 24-216 (244)
6 PRK07933 thymidylate kinase; V 99.9 1.5E-21 3.2E-26 182.4 19.3 200 70-294 1-210 (213)
7 PLN02924 thymidylate kinase 99.9 8.5E-21 1.8E-25 178.1 17.8 189 67-297 14-203 (220)
8 PRK00698 tmk thymidylate kinas 99.9 2.5E-20 5.5E-25 171.3 19.3 197 68-295 2-200 (205)
9 PF01712 dNK: Deoxynucleoside 99.9 8.3E-22 1.8E-26 173.5 8.8 124 146-279 1-127 (146)
10 PRK13976 thymidylate kinase; P 99.9 4.5E-20 9.7E-25 171.9 20.9 193 70-295 1-199 (209)
11 COG0125 Tmk Thymidylate kinase 99.9 3.1E-20 6.6E-25 172.4 18.3 198 68-297 2-203 (208)
12 PRK13973 thymidylate kinase; P 99.8 8.9E-20 1.9E-24 170.2 18.2 198 68-296 2-205 (213)
13 cd01672 TMPK Thymidine monopho 99.8 4E-19 8.6E-24 161.6 17.5 195 70-294 1-197 (200)
14 TIGR00041 DTMP_kinase thymidyl 99.8 6.1E-19 1.3E-23 161.3 17.6 192 69-291 3-195 (195)
15 PF02223 Thymidylate_kin: Thym 99.8 2.9E-19 6.4E-24 162.6 13.4 185 74-291 1-186 (186)
16 PRK13975 thymidylate kinase; P 99.8 3.3E-18 7.2E-23 156.6 18.5 188 69-297 2-190 (196)
17 PRK13974 thymidylate kinase; P 99.8 9.9E-18 2.2E-22 156.3 21.5 201 68-296 2-205 (212)
18 PHA03132 thymidine kinase; Pro 99.8 9.2E-18 2E-22 175.3 14.6 178 68-264 256-447 (580)
19 KOG3327|consensus 99.6 1.1E-14 2.4E-19 130.5 12.6 188 67-294 3-192 (208)
20 PHA03136 thymidine kinase; Pro 99.5 1E-13 2.3E-18 137.7 14.8 180 68-264 35-236 (378)
21 TIGR01359 UMP_CMP_kin_fam UMP- 99.5 1.6E-13 3.4E-18 124.2 14.1 177 71-294 1-181 (183)
22 PRK14532 adenylate kinase; Pro 99.5 1.5E-13 3.2E-18 125.3 13.8 175 71-294 2-184 (188)
23 PRK03839 putative kinase; Prov 99.5 4.7E-13 1E-17 121.2 15.7 169 70-314 1-169 (180)
24 COG1102 Cmk Cytidylate kinase 99.5 1.1E-13 2.3E-18 122.0 11.0 163 70-293 1-168 (179)
25 TIGR01360 aden_kin_iso1 adenyl 99.5 5.3E-13 1.1E-17 120.8 15.6 178 68-293 2-183 (188)
26 PRK13949 shikimate kinase; Pro 99.5 1.3E-13 2.9E-18 124.3 11.0 72 216-293 94-167 (169)
27 COG0703 AroK Shikimate kinase 99.5 1.2E-13 2.6E-18 124.0 9.1 161 69-293 2-164 (172)
28 COG1936 Predicted nucleotide k 99.5 6.3E-13 1.4E-17 118.5 12.4 91 215-315 82-173 (180)
29 KOG3354|consensus 99.5 5.5E-12 1.2E-16 110.4 17.4 168 70-295 13-186 (191)
30 PRK14531 adenylate kinase; Pro 99.4 3.5E-12 7.5E-17 116.2 16.0 174 70-294 3-181 (183)
31 PLN02200 adenylate kinase fami 99.4 3.2E-12 6.9E-17 121.2 15.7 174 68-294 42-221 (234)
32 PRK02496 adk adenylate kinase; 99.4 3.6E-12 7.8E-17 115.8 14.3 72 215-294 107-181 (184)
33 PRK13808 adenylate kinase; Pro 99.4 5.4E-12 1.2E-16 124.7 15.7 184 71-296 2-192 (333)
34 PRK06762 hypothetical protein; 99.4 6.4E-12 1.4E-16 112.1 14.3 157 69-293 2-160 (166)
35 TIGR01313 therm_gnt_kin carboh 99.4 2E-11 4.3E-16 108.6 17.2 161 72-295 1-161 (163)
36 PRK14527 adenylate kinase; Pro 99.4 1.3E-11 2.8E-16 113.1 16.1 178 67-294 4-189 (191)
37 PRK00081 coaE dephospho-CoA ki 99.4 6E-12 1.3E-16 115.9 12.7 181 69-294 2-190 (194)
38 PRK14530 adenylate kinase; Pro 99.4 3.4E-11 7.3E-16 112.4 17.1 31 69-99 3-33 (215)
39 COG4088 Predicted nucleotide k 99.4 2.7E-11 5.9E-16 110.9 15.8 168 69-296 1-172 (261)
40 PRK14730 coaE dephospho-CoA ki 99.4 1.2E-11 2.5E-16 114.2 13.6 181 70-294 2-191 (195)
41 PRK13948 shikimate kinase; Pro 99.3 5E-12 1.1E-16 115.4 10.8 159 67-296 8-174 (182)
42 COG3265 GntK Gluconate kinase 99.3 5.2E-11 1.1E-15 103.7 15.5 155 75-293 1-155 (161)
43 PRK14528 adenylate kinase; Pro 99.3 4.5E-11 9.7E-16 109.4 16.1 175 70-293 2-184 (186)
44 PRK14732 coaE dephospho-CoA ki 99.3 1.4E-11 3E-16 113.8 11.8 179 71-294 1-187 (196)
45 PRK03731 aroL shikimate kinase 99.3 2.2E-11 4.7E-16 109.2 12.6 30 70-99 3-32 (171)
46 PRK10078 ribose 1,5-bisphospho 99.3 1.6E-11 3.4E-16 112.1 11.7 173 69-296 2-175 (186)
47 PRK05057 aroK shikimate kinase 99.3 1.1E-11 2.4E-16 112.0 10.5 31 69-99 4-34 (172)
48 PLN02422 dephospho-CoA kinase 99.3 2E-11 4.3E-16 115.4 11.8 182 70-295 2-192 (232)
49 PTZ00451 dephospho-CoA kinase; 99.3 2.3E-11 5.1E-16 115.8 12.2 185 70-295 2-205 (244)
50 PRK14734 coaE dephospho-CoA ki 99.3 1.4E-11 3E-16 114.1 10.4 179 70-294 2-191 (200)
51 PRK13946 shikimate kinase; Pro 99.3 1.6E-10 3.6E-15 105.3 17.2 163 69-295 10-174 (184)
52 PRK13947 shikimate kinase; Pro 99.3 8.8E-11 1.9E-15 105.1 15.0 68 217-293 95-163 (171)
53 PRK04182 cytidylate kinase; Pr 99.3 2.7E-11 5.8E-16 108.7 11.6 30 70-99 1-30 (180)
54 PRK14733 coaE dephospho-CoA ki 99.3 2.5E-11 5.5E-16 112.6 11.6 184 68-294 5-195 (204)
55 PRK08233 hypothetical protein; 99.3 1.3E-10 2.8E-15 104.6 15.7 75 216-294 98-174 (182)
56 PRK06217 hypothetical protein; 99.3 1.9E-10 4.1E-15 104.7 16.6 30 70-99 2-31 (183)
57 TIGR01351 adk adenylate kinase 99.3 5.8E-11 1.3E-15 110.4 13.5 179 72-294 2-208 (210)
58 PRK14529 adenylate kinase; Pro 99.3 2.6E-10 5.7E-15 107.2 17.7 31 71-101 2-32 (223)
59 PLN02674 adenylate kinase 99.3 6.1E-11 1.3E-15 112.9 13.5 184 68-294 30-242 (244)
60 PRK01184 hypothetical protein; 99.3 1.5E-10 3.2E-15 105.1 15.4 74 215-295 103-176 (184)
61 PRK14731 coaE dephospho-CoA ki 99.3 3E-11 6.6E-16 112.4 10.6 184 67-294 3-199 (208)
62 TIGR03574 selen_PSTK L-seryl-t 99.3 1.7E-10 3.7E-15 110.0 16.0 164 71-294 1-166 (249)
63 PRK00279 adk adenylate kinase; 99.3 1.6E-10 3.6E-15 107.7 15.4 31 70-100 1-31 (215)
64 PRK04040 adenylate kinase; Pro 99.3 1.5E-10 3.2E-15 106.3 14.6 176 69-294 2-186 (188)
65 COG0237 CoaE Dephospho-CoA kin 99.2 4.8E-11 1E-15 110.5 11.1 181 69-295 2-190 (201)
66 PHA03138 thymidine kinase; Pro 99.2 1.9E-10 4.1E-15 113.2 15.5 174 69-260 12-208 (340)
67 TIGR00152 dephospho-CoA kinase 99.2 5.2E-11 1.1E-15 108.8 10.9 179 71-292 1-187 (188)
68 TIGR02173 cyt_kin_arch cytidyl 99.2 1.2E-10 2.6E-15 103.7 11.9 30 70-99 1-30 (171)
69 PRK14738 gmk guanylate kinase; 99.2 1.4E-10 3.1E-15 107.7 12.7 176 68-297 12-194 (206)
70 COG0563 Adk Adenylate kinase a 99.2 4.4E-10 9.6E-15 102.2 15.6 173 70-293 1-175 (178)
71 PRK00625 shikimate kinase; Pro 99.2 2.8E-10 6.1E-15 103.1 14.1 37 70-109 1-37 (173)
72 KOG3079|consensus 99.2 4.7E-10 1E-14 101.0 14.9 178 67-293 6-189 (195)
73 PF01121 CoaE: Dephospho-CoA k 99.2 2.7E-11 5.8E-16 110.5 6.9 136 70-237 1-144 (180)
74 PRK08356 hypothetical protein; 99.2 2E-09 4.3E-14 99.0 19.1 74 217-295 116-190 (195)
75 PRK13951 bifunctional shikimat 99.2 7.3E-11 1.6E-15 123.0 10.2 150 70-291 1-155 (488)
76 cd01428 ADK Adenylate kinase ( 99.2 3E-10 6.6E-15 103.3 12.8 28 72-99 2-29 (194)
77 PRK00131 aroK shikimate kinase 99.2 4.6E-10 1E-14 100.0 13.4 32 68-99 3-34 (175)
78 PF13671 AAA_33: AAA domain; P 99.2 1.3E-10 2.8E-15 100.5 9.1 121 71-241 1-123 (143)
79 cd00227 CPT Chloramphenicol (C 99.2 2.2E-09 4.8E-14 96.9 17.2 170 69-293 2-172 (175)
80 PRK08154 anaerobic benzoate ca 99.1 1.2E-09 2.7E-14 107.6 16.5 166 67-295 131-299 (309)
81 cd00464 SK Shikimate kinase (S 99.1 1E-09 2.2E-14 96.1 14.0 29 71-99 1-29 (154)
82 TIGR02322 phosphon_PhnN phosph 99.1 8.1E-10 1.8E-14 99.7 13.8 65 216-294 111-175 (179)
83 COG0572 Udk Uridine kinase [Nu 99.1 2.8E-10 6.1E-15 105.9 10.6 184 68-293 7-206 (218)
84 PLN02199 shikimate kinase 99.1 1.6E-10 3.5E-15 112.2 9.4 48 68-118 101-150 (303)
85 PLN02459 probable adenylate ki 99.1 8.6E-10 1.9E-14 105.7 14.2 32 69-100 29-60 (261)
86 PRK05480 uridine/cytidine kina 99.1 6E-10 1.3E-14 103.3 12.8 74 216-294 126-205 (209)
87 PRK08118 topology modulation p 99.1 4.5E-10 9.8E-15 101.1 11.5 29 70-98 2-30 (167)
88 PRK03333 coaE dephospho-CoA ki 99.1 2.8E-10 6.2E-15 115.8 11.1 178 70-294 2-189 (395)
89 cd02022 DPCK Dephospho-coenzym 99.1 3.5E-10 7.6E-15 102.7 10.3 134 71-237 1-143 (179)
90 PRK14021 bifunctional shikimat 99.1 9.5E-10 2.1E-14 116.3 14.6 161 69-293 6-172 (542)
91 PLN02842 nucleotide kinase 99.1 1.9E-09 4.2E-14 111.7 15.2 230 74-349 2-274 (505)
92 PHA02530 pseT polynucleotide k 99.1 2.3E-09 5E-14 104.6 15.0 155 69-277 2-164 (300)
93 PHA03134 thymidine kinase; Pro 99.1 1.7E-09 3.7E-14 106.3 12.9 176 70-262 14-206 (340)
94 PRK14526 adenylate kinase; Pro 99.1 4.4E-09 9.4E-14 98.3 15.1 30 71-100 2-31 (211)
95 cd02021 GntK Gluconate kinase 99.1 7.6E-09 1.7E-13 90.6 15.7 29 71-99 1-29 (150)
96 PHA03135 thymidine kinase; Pro 99.1 1.3E-09 2.8E-14 107.4 11.7 178 70-262 11-202 (343)
97 KOG3220|consensus 99.1 7.8E-10 1.7E-14 100.8 9.4 184 69-296 1-193 (225)
98 PRK09825 idnK D-gluconate kina 99.0 1.2E-08 2.7E-13 92.6 16.7 67 215-293 98-164 (176)
99 COG0194 Gmk Guanylate kinase [ 99.0 2.5E-09 5.5E-14 96.8 11.6 177 68-297 3-182 (191)
100 PRK06696 uridine kinase; Valid 99.0 1.2E-09 2.6E-14 102.6 9.9 54 55-108 8-63 (223)
101 PTZ00301 uridine kinase; Provi 99.0 3.6E-09 7.8E-14 98.8 12.7 57 216-277 127-188 (210)
102 PTZ00088 adenylate kinase 1; P 99.0 1.3E-08 2.9E-13 96.2 16.7 32 68-99 5-36 (229)
103 KOG3347|consensus 99.0 6.1E-09 1.3E-13 90.9 12.5 157 69-294 7-163 (176)
104 PRK13477 bifunctional pantoate 99.0 7.3E-09 1.6E-13 108.1 14.8 33 68-100 283-315 (512)
105 TIGR03263 guanyl_kin guanylate 99.0 4.3E-09 9.3E-14 94.9 10.5 176 69-296 1-179 (180)
106 PRK14737 gmk guanylate kinase; 99.0 1.1E-08 2.3E-13 93.9 12.9 178 68-297 3-184 (186)
107 PRK05541 adenylylsulfate kinas 99.0 1.1E-08 2.4E-13 92.2 12.8 30 67-96 5-34 (176)
108 PRK00023 cmk cytidylate kinase 98.9 2.1E-08 4.5E-13 94.6 14.2 33 69-101 4-36 (225)
109 COG0283 Cmk Cytidylate kinase 98.9 2.2E-08 4.8E-13 92.7 13.9 32 69-100 4-35 (222)
110 PF01202 SKI: Shikimate kinase 98.9 4.5E-09 9.8E-14 93.5 8.7 38 78-118 1-39 (158)
111 TIGR00455 apsK adenylylsulfate 98.9 6.5E-08 1.4E-12 87.9 15.8 32 63-94 12-43 (184)
112 TIGR00017 cmk cytidylate kinas 98.9 2.1E-08 4.5E-13 94.2 12.6 32 70-101 3-34 (217)
113 PRK11545 gntK gluconate kinase 98.9 1.2E-07 2.7E-12 84.9 17.0 67 215-293 90-156 (163)
114 PRK07261 topology modulation p 98.9 1.4E-08 3.1E-13 91.6 11.0 30 70-99 1-30 (171)
115 PRK06547 hypothetical protein; 98.9 4.5E-08 9.7E-13 88.6 13.9 40 67-109 13-52 (172)
116 PF08433 KTI12: Chromatin asso 98.9 3.1E-08 6.7E-13 95.9 13.6 165 70-291 2-169 (270)
117 cd02020 CMPK Cytidine monophos 98.9 5.6E-08 1.2E-12 84.1 13.9 30 71-100 1-30 (147)
118 PRK00300 gmk guanylate kinase; 98.9 2E-08 4.4E-13 92.5 11.1 28 67-94 3-30 (205)
119 TIGR01663 PNK-3'Pase polynucle 98.8 7.9E-08 1.7E-12 100.8 16.6 105 67-239 367-471 (526)
120 PRK12339 2-phosphoglycerate ki 98.8 9.8E-08 2.1E-12 88.3 14.2 31 68-98 2-32 (197)
121 COG0529 CysC Adenylylsulfate k 98.8 5.1E-08 1.1E-12 87.6 10.5 38 62-99 16-53 (197)
122 PF13238 AAA_18: AAA domain; P 98.8 1.7E-08 3.8E-13 85.0 7.1 22 72-93 1-22 (129)
123 PF00406 ADK: Adenylate kinase 98.8 1.7E-08 3.7E-13 88.8 7.0 119 74-235 1-122 (151)
124 PRK03846 adenylylsulfate kinas 98.7 1.7E-07 3.7E-12 86.4 13.6 32 63-94 18-49 (198)
125 TIGR03575 selen_PSTK_euk L-ser 98.7 1.5E-07 3.3E-12 93.7 13.9 55 215-279 154-211 (340)
126 PF00485 PRK: Phosphoribulokin 98.7 3.5E-08 7.6E-13 90.6 8.6 54 216-275 127-185 (194)
127 TIGR00235 udk uridine kinase. 98.7 2.3E-07 4.9E-12 86.1 13.4 30 66-95 3-32 (207)
128 PF13207 AAA_17: AAA domain; P 98.7 2.4E-08 5.1E-13 84.0 5.3 28 71-98 1-28 (121)
129 PHA03133 thymidine kinase; Pro 98.7 4.4E-07 9.5E-12 90.0 14.4 177 69-261 40-235 (368)
130 PRK15453 phosphoribulokinase; 98.7 4.6E-08 9.9E-13 94.6 7.1 60 215-280 146-215 (290)
131 PRK05416 glmZ(sRNA)-inactivati 98.7 6.6E-07 1.4E-11 87.4 15.1 126 216-361 86-216 (288)
132 smart00072 GuKc Guanylate kina 98.6 3.9E-07 8.3E-12 83.0 12.6 25 69-93 2-26 (184)
133 PRK00889 adenylylsulfate kinas 98.6 4.2E-07 9.1E-12 81.8 12.5 29 67-95 2-30 (175)
134 PRK12338 hypothetical protein; 98.6 1.2E-06 2.5E-11 86.6 16.4 31 68-98 3-33 (319)
135 PRK07667 uridine kinase; Provi 98.6 6.5E-07 1.4E-11 82.3 13.7 34 64-97 12-45 (193)
136 cd02024 NRK1 Nicotinamide ribo 98.6 3.2E-07 7E-12 84.1 11.6 36 71-109 1-37 (187)
137 PRK11860 bifunctional 3-phosph 98.6 1.7E-07 3.8E-12 101.5 11.4 31 69-99 442-472 (661)
138 PF00693 Herpes_TK: Thymidine 98.6 5.3E-07 1.2E-11 86.9 13.3 167 76-261 1-187 (281)
139 cd02023 UMPK Uridine monophosp 98.6 4E-07 8.6E-12 83.6 12.0 56 216-276 119-179 (198)
140 PF01583 APS_kinase: Adenylyls 98.6 7.2E-08 1.6E-12 85.8 6.7 32 68-99 1-32 (156)
141 PRK05537 bifunctional sulfate 98.6 2.7E-07 5.8E-12 98.1 11.8 29 67-95 390-418 (568)
142 PF07931 CPT: Chloramphenicol 98.6 1.9E-06 4.1E-11 78.2 14.9 169 69-293 1-171 (174)
143 PF13521 AAA_28: AAA domain; P 98.6 1.5E-06 3.2E-11 77.3 13.6 119 72-228 2-121 (163)
144 PRK09518 bifunctional cytidyla 98.6 9.4E-07 2E-11 96.6 14.5 76 214-297 153-231 (712)
145 cd02029 PRK_like Phosphoribulo 98.5 8.3E-08 1.8E-12 92.2 5.5 59 216-280 141-209 (277)
146 COG0645 Predicted kinase [Gene 98.5 1.1E-06 2.3E-11 78.7 11.8 125 70-238 2-126 (170)
147 cd02027 APSK Adenosine 5'-phos 98.5 9.3E-07 2E-11 78.0 11.3 24 71-94 1-24 (149)
148 PRK05506 bifunctional sulfate 98.5 7.9E-07 1.7E-11 95.9 12.4 32 64-95 455-486 (632)
149 TIGR03707 PPK2_P_aer polyphosp 98.5 2.4E-06 5.1E-11 80.8 13.8 170 67-282 29-207 (230)
150 PF00625 Guanylate_kin: Guanyl 98.5 2.9E-07 6.3E-12 83.6 6.9 173 68-295 1-180 (183)
151 TIGR03708 poly_P_AMP_trns poly 98.5 2E-06 4.4E-11 89.4 13.7 169 67-281 38-215 (493)
152 COG2019 AdkA Archaeal adenylat 98.4 7.6E-06 1.6E-10 73.1 14.6 75 214-294 108-185 (189)
153 PRK09270 nucleoside triphospha 98.4 4.7E-06 1E-10 78.6 13.8 41 56-96 18-60 (229)
154 TIGR03709 PPK2_rel_1 polyphosp 98.4 5E-06 1.1E-10 80.1 14.0 182 68-295 55-250 (264)
155 PLN02772 guanylate kinase 98.4 6E-06 1.3E-10 83.4 14.9 182 67-297 133-318 (398)
156 PLN02318 phosphoribulokinase/u 98.4 3.9E-06 8.4E-11 88.5 13.7 56 216-276 177-237 (656)
157 cd02028 UMPK_like Uridine mono 98.4 7.7E-07 1.7E-11 80.9 6.5 25 71-95 1-25 (179)
158 PLN02348 phosphoribulokinase 98.3 6.7E-07 1.5E-11 90.2 6.2 30 67-96 47-76 (395)
159 COG3709 Uncharacterized compon 98.3 5.6E-06 1.2E-10 73.6 9.8 171 68-296 4-181 (192)
160 cd02025 PanK Pantothenate kina 98.2 5.4E-07 1.2E-11 84.7 2.8 24 71-94 1-24 (220)
161 KOG3062|consensus 98.2 4.3E-06 9.4E-11 77.8 8.3 173 69-297 1-176 (281)
162 PRK12269 bifunctional cytidyla 98.2 1.7E-05 3.7E-10 87.8 14.3 32 68-99 33-64 (863)
163 PRK06761 hypothetical protein; 98.2 1.8E-05 3.9E-10 77.1 12.4 82 150-238 123-206 (282)
164 PRK04220 2-phosphoglycerate ki 98.2 2.7E-05 5.8E-10 76.4 13.0 191 67-298 90-291 (301)
165 PRK08099 bifunctional DNA-bind 98.2 1.6E-05 3.5E-10 81.1 11.6 35 68-102 218-252 (399)
166 PF06414 Zeta_toxin: Zeta toxi 98.1 1.9E-05 4.1E-10 72.8 10.5 27 67-93 13-39 (199)
167 PRK07429 phosphoribulokinase; 98.1 1.7E-05 3.7E-10 78.9 10.7 30 67-96 6-35 (327)
168 PLN02165 adenylate isopentenyl 98.1 3E-05 6.5E-10 77.0 12.2 38 65-102 39-76 (334)
169 PRK12337 2-phosphoglycerate ki 98.1 3.8E-05 8.3E-10 79.1 13.3 30 68-97 254-283 (475)
170 PF03976 PPK2: Polyphosphate k 98.0 3.4E-06 7.4E-11 79.7 3.9 167 68-280 30-205 (228)
171 TIGR00554 panK_bact pantothena 98.0 2.9E-05 6.3E-10 76.0 10.5 28 67-94 60-87 (290)
172 TIGR03708 poly_P_AMP_trns poly 98.0 5.7E-05 1.2E-09 78.7 13.0 171 66-282 296-475 (493)
173 cd02026 PRK Phosphoribulokinas 98.0 2.5E-05 5.4E-10 75.9 9.5 25 71-95 1-25 (273)
174 COG4639 Predicted kinase [Gene 98.0 9.6E-05 2.1E-09 65.4 12.2 58 162-238 62-119 (168)
175 COG3911 Predicted ATPase [Gene 98.0 4.8E-05 1E-09 66.8 9.9 147 69-261 9-159 (183)
176 PHA00729 NTP-binding motif con 98.0 0.0001 2.2E-09 69.5 12.5 35 60-94 7-42 (226)
177 PRK05439 pantothenate kinase; 98.0 3E-05 6.6E-10 76.5 9.3 29 67-95 84-112 (311)
178 cd00071 GMPK Guanosine monopho 97.9 1.1E-05 2.3E-10 70.2 4.6 25 71-95 1-25 (137)
179 PF08303 tRNA_lig_kinase: tRNA 97.9 0.0004 8.7E-09 62.1 14.5 29 71-99 1-30 (168)
180 PF03668 ATP_bind_2: P-loop AT 97.8 0.00045 9.8E-09 67.0 14.6 127 216-361 82-213 (284)
181 COG2074 2-phosphoglycerate kin 97.8 0.00024 5.2E-09 67.5 12.3 187 67-292 87-282 (299)
182 PF13189 Cytidylate_kin2: Cyti 97.8 8.6E-05 1.9E-09 67.5 9.1 29 71-99 1-29 (179)
183 COG2326 Uncharacterized conser 97.8 0.00014 3E-09 69.0 10.6 167 66-277 71-245 (270)
184 PF01591 6PF2K: 6-phosphofruct 97.8 0.00031 6.7E-09 66.2 12.0 37 63-99 6-42 (222)
185 TIGR01526 nadR_NMN_Atrans nico 97.6 0.00024 5.3E-09 70.7 9.6 33 69-101 162-194 (325)
186 KOG3078|consensus 97.6 0.0001 2.2E-09 69.6 6.4 33 68-100 14-46 (235)
187 PF01745 IPT: Isopentenyl tran 97.6 0.00071 1.5E-08 63.1 11.2 154 69-261 1-162 (233)
188 cd02019 NK Nucleoside/nucleoti 97.6 5.4E-05 1.2E-09 57.9 3.2 23 71-93 1-23 (69)
189 KOG0707|consensus 97.5 0.0011 2.3E-08 62.3 11.5 181 69-298 37-222 (231)
190 PTZ00322 6-phosphofructo-2-kin 97.5 0.00076 1.6E-08 73.4 11.9 32 68-99 214-245 (664)
191 PRK00091 miaA tRNA delta(2)-is 97.4 0.00034 7.4E-09 69.1 7.1 35 68-102 3-37 (307)
192 TIGR00150 HI0065_YjeE ATPase, 97.4 0.0003 6.5E-09 61.1 5.8 39 57-96 11-49 (133)
193 KOG3308|consensus 97.4 0.00034 7.4E-09 64.4 6.0 31 68-98 3-34 (225)
194 KOG0635|consensus 97.4 0.0011 2.3E-08 58.6 8.8 33 65-97 27-59 (207)
195 PF00004 AAA: ATPase family as 97.3 0.00016 3.6E-09 60.7 3.3 27 72-98 1-27 (132)
196 PF02367 UPF0079: Uncharacteri 97.2 0.00045 9.8E-09 59.1 5.0 42 59-101 6-48 (123)
197 COG1072 CoaA Panthothenate kin 97.1 0.0012 2.5E-08 63.8 7.2 31 67-97 80-110 (283)
198 smart00382 AAA ATPases associa 97.1 0.00039 8.4E-09 57.7 3.5 29 69-97 2-30 (148)
199 COG1618 Predicted nucleotide k 97.1 0.00045 9.7E-09 61.6 3.8 32 67-98 3-34 (179)
200 KOG1384|consensus 97.1 0.0052 1.1E-07 60.5 11.5 37 68-104 6-42 (348)
201 KOG0733|consensus 97.1 0.0012 2.6E-08 69.6 6.9 32 68-99 222-253 (802)
202 COG1660 Predicted P-loop-conta 97.0 0.015 3.2E-07 55.8 13.2 124 218-360 85-213 (286)
203 PRK09169 hypothetical protein; 97.0 0.0007 1.5E-08 79.8 5.1 47 69-118 2110-2157(2316)
204 PLN02840 tRNA dimethylallyltra 97.0 0.00064 1.4E-08 69.6 4.3 36 67-102 19-54 (421)
205 COG3172 NadR Predicted ATPase/ 96.9 0.0064 1.4E-07 54.3 9.4 32 69-100 8-39 (187)
206 PRK10646 ADP-binding protein; 96.9 0.0017 3.7E-08 57.7 5.3 44 57-101 17-61 (153)
207 PRK05800 cobU adenosylcobinami 96.9 0.00099 2.1E-08 60.2 3.7 27 70-96 2-28 (170)
208 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0014 3.1E-08 65.8 5.1 28 68-95 77-104 (361)
209 PLN02748 tRNA dimethylallyltra 96.8 0.00091 2E-08 69.6 3.4 39 65-103 18-56 (468)
210 PF07728 AAA_5: AAA domain (dy 96.8 0.001 2.2E-08 57.2 3.0 27 72-98 2-28 (139)
211 COG1126 GlnQ ABC-type polar am 96.8 0.0011 2.5E-08 61.8 3.3 25 67-91 26-50 (240)
212 TIGR03015 pepcterm_ATPase puta 96.7 0.0026 5.7E-08 60.7 6.0 29 66-94 40-68 (269)
213 KOG0744|consensus 96.7 0.0011 2.4E-08 65.2 3.3 29 70-98 178-206 (423)
214 KOG0730|consensus 96.7 0.0062 1.4E-07 64.8 9.1 38 62-99 460-498 (693)
215 cd00009 AAA The AAA+ (ATPases 96.7 0.0031 6.7E-08 52.8 5.4 36 59-94 8-44 (151)
216 COG0802 Predicted ATPase or ki 96.7 0.0036 7.7E-08 55.2 5.7 36 66-101 22-58 (149)
217 PF13173 AAA_14: AAA domain 96.7 0.0019 4E-08 55.2 3.8 27 68-94 1-27 (128)
218 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.0049 1.1E-07 57.2 6.7 57 38-94 6-63 (226)
219 TIGR01650 PD_CobS cobaltochela 96.6 0.006 1.3E-07 60.6 7.6 50 48-98 44-93 (327)
220 PF05729 NACHT: NACHT domain 96.6 0.0018 4E-08 56.3 3.6 29 70-98 1-29 (166)
221 cd01130 VirB11-like_ATPase Typ 96.6 0.0027 5.9E-08 57.8 4.8 33 62-94 18-50 (186)
222 TIGR02640 gas_vesic_GvpN gas v 96.6 0.0028 6E-08 61.1 5.1 41 57-98 10-50 (262)
223 PF05496 RuvB_N: Holliday junc 96.6 0.0017 3.6E-08 61.2 3.4 30 69-98 50-79 (233)
224 KOG1532|consensus 96.6 0.0075 1.6E-07 58.2 7.8 32 67-98 17-48 (366)
225 TIGR00174 miaA tRNA isopenteny 96.5 0.0015 3.1E-08 64.0 2.7 33 71-103 1-33 (287)
226 PF13401 AAA_22: AAA domain; P 96.5 0.002 4.4E-08 54.3 3.1 29 67-95 2-30 (131)
227 COG4619 ABC-type uncharacteriz 96.5 0.0023 5.1E-08 57.7 3.3 25 67-91 27-51 (223)
228 PF07726 AAA_3: ATPase family 96.4 0.0014 3.1E-08 56.4 1.8 27 72-98 2-28 (131)
229 PF13245 AAA_19: Part of AAA d 96.4 0.0038 8.1E-08 48.8 3.7 26 68-93 9-35 (76)
230 PRK10751 molybdopterin-guanine 96.4 0.0034 7.3E-08 57.0 3.9 30 68-97 5-34 (173)
231 PF00448 SRP54: SRP54-type pro 96.3 0.0035 7.5E-08 58.0 3.8 28 69-96 1-28 (196)
232 COG1136 SalX ABC-type antimicr 96.3 0.0032 6.9E-08 59.5 3.5 25 67-91 29-53 (226)
233 COG1116 TauB ABC-type nitrate/ 96.3 0.0032 7E-08 59.9 3.5 25 67-91 27-51 (248)
234 COG1855 ATPase (PilT family) [ 96.3 0.0037 8E-08 64.0 4.0 39 57-95 251-289 (604)
235 TIGR00390 hslU ATP-dependent p 96.3 0.0032 7E-08 64.5 3.6 31 69-99 47-77 (441)
236 TIGR02881 spore_V_K stage V sp 96.3 0.0037 8E-08 60.1 3.8 27 68-94 41-67 (261)
237 COG3839 MalK ABC-type sugar tr 96.3 0.0033 7.3E-08 62.7 3.5 24 67-90 27-50 (338)
238 PF03266 NTPase_1: NTPase; In 96.2 0.0039 8.5E-08 56.2 3.5 23 71-93 1-23 (168)
239 PLN02796 D-glycerate 3-kinase 96.2 0.0043 9.3E-08 62.1 4.0 28 68-95 99-126 (347)
240 cd00820 PEPCK_HprK Phosphoenol 96.2 0.0043 9.3E-08 51.8 3.4 23 68-90 14-36 (107)
241 PRK05201 hslU ATP-dependent pr 96.2 0.0042 9.1E-08 63.7 3.8 32 69-100 50-81 (443)
242 COG0324 MiaA tRNA delta(2)-iso 96.2 0.004 8.7E-08 61.3 3.5 37 68-104 2-38 (308)
243 PF13191 AAA_16: AAA ATPase do 96.2 0.0064 1.4E-07 54.1 4.5 30 67-96 22-51 (185)
244 PF03308 ArgK: ArgK protein; 96.1 0.0061 1.3E-07 58.5 4.4 39 57-96 18-56 (266)
245 PF00005 ABC_tran: ABC transpo 96.1 0.0038 8.3E-08 53.2 2.7 27 67-93 9-35 (137)
246 PF00931 NB-ARC: NB-ARC domain 96.1 0.0063 1.4E-07 58.5 4.5 38 57-94 4-44 (287)
247 PRK06526 transposase; Provisio 96.1 0.0089 1.9E-07 57.5 5.5 30 64-93 93-122 (254)
248 PRK08903 DnaA regulatory inact 96.1 0.013 2.9E-07 54.7 6.6 27 67-93 40-66 (227)
249 PF03215 Rad17: Rad17 cell cyc 96.1 0.0048 1E-07 65.2 3.9 30 69-98 45-74 (519)
250 PHA02575 1 deoxynucleoside mon 96.1 0.0042 9.1E-08 58.5 3.1 23 70-92 1-23 (227)
251 KOG2004|consensus 96.1 0.0037 8.1E-08 67.1 3.0 32 67-98 436-467 (906)
252 COG0466 Lon ATP-dependent Lon 96.1 0.0041 9E-08 66.8 3.3 32 67-98 348-379 (782)
253 PLN00020 ribulose bisphosphate 96.1 0.0081 1.8E-07 60.6 5.1 32 67-98 146-177 (413)
254 cd03116 MobB Molybdenum is an 96.1 0.0061 1.3E-07 54.5 3.8 30 69-98 1-30 (159)
255 TIGR01166 cbiO cobalt transpor 96.1 0.0053 1.1E-07 55.8 3.5 25 67-91 16-40 (190)
256 PF13555 AAA_29: P-loop contai 96.1 0.0071 1.5E-07 45.5 3.5 26 66-91 20-45 (62)
257 TIGR00960 3a0501s02 Type II (G 96.0 0.0054 1.2E-07 56.8 3.5 26 67-92 27-52 (216)
258 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.0 0.0055 1.2E-07 56.8 3.5 26 67-92 28-53 (218)
259 cd01131 PilT Pilus retraction 96.0 0.0058 1.3E-07 56.3 3.6 24 71-94 3-26 (198)
260 cd03292 ABC_FtsE_transporter F 96.0 0.0056 1.2E-07 56.6 3.5 26 67-92 25-50 (214)
261 PF10662 PduV-EutP: Ethanolami 96.0 0.0056 1.2E-07 53.8 3.1 23 69-91 1-23 (143)
262 PF03205 MobB: Molybdopterin g 96.0 0.0063 1.4E-07 53.2 3.5 28 70-97 1-28 (140)
263 COG1763 MobB Molybdopterin-gua 96.0 0.0061 1.3E-07 54.6 3.4 31 69-99 2-32 (161)
264 PRK10416 signal recognition pa 96.0 0.011 2.5E-07 58.7 5.7 27 68-94 113-139 (318)
265 cd03269 ABC_putative_ATPase Th 96.0 0.006 1.3E-07 56.3 3.5 25 67-91 24-48 (210)
266 cd03115 SRP The signal recogni 96.0 0.0066 1.4E-07 54.2 3.6 24 71-94 2-25 (173)
267 COG1120 FepC ABC-type cobalami 96.0 0.006 1.3E-07 58.7 3.5 28 67-94 26-53 (258)
268 TIGR02673 FtsE cell division A 96.0 0.0061 1.3E-07 56.4 3.5 26 67-92 26-51 (214)
269 cd03225 ABC_cobalt_CbiO_domain 96.0 0.0063 1.4E-07 56.1 3.5 26 67-92 25-50 (211)
270 COG3842 PotA ABC-type spermidi 95.9 0.0059 1.3E-07 61.3 3.5 25 67-91 29-53 (352)
271 COG5324 Uncharacterized conser 95.9 0.11 2.4E-06 53.7 12.4 31 70-100 375-405 (758)
272 PF00910 RNA_helicase: RNA hel 95.9 0.0058 1.3E-07 50.6 2.9 26 72-97 1-26 (107)
273 PRK09435 membrane ATPase/prote 95.9 0.011 2.3E-07 59.1 5.3 30 66-95 53-82 (332)
274 cd03259 ABC_Carb_Solutes_like 95.9 0.0067 1.5E-07 56.1 3.5 26 67-92 24-49 (213)
275 PRK15455 PrkA family serine pr 95.9 0.0088 1.9E-07 63.5 4.7 32 63-94 97-128 (644)
276 cd03263 ABC_subfamily_A The AB 95.9 0.0067 1.5E-07 56.3 3.5 25 67-91 26-50 (220)
277 cd03224 ABC_TM1139_LivF_branch 95.9 0.0066 1.4E-07 56.4 3.5 26 67-92 24-49 (222)
278 PRK13695 putative NTPase; Prov 95.9 0.0074 1.6E-07 54.1 3.6 25 70-94 1-25 (174)
279 cd03235 ABC_Metallic_Cations A 95.9 0.0062 1.3E-07 56.3 3.2 25 67-91 23-47 (213)
280 PHA02244 ATPase-like protein 95.9 0.013 2.8E-07 59.2 5.7 36 63-98 113-148 (383)
281 TIGR02211 LolD_lipo_ex lipopro 95.9 0.0069 1.5E-07 56.3 3.5 26 67-92 29-54 (221)
282 cd03219 ABC_Mj1267_LivG_branch 95.9 0.0063 1.4E-07 57.1 3.3 25 67-91 24-48 (236)
283 cd03261 ABC_Org_Solvent_Resist 95.9 0.0068 1.5E-07 57.0 3.5 25 67-91 24-48 (235)
284 cd03226 ABC_cobalt_CbiO_domain 95.9 0.0068 1.5E-07 55.8 3.4 25 67-91 24-48 (205)
285 cd03262 ABC_HisP_GlnQ_permease 95.9 0.007 1.5E-07 55.8 3.5 26 67-92 24-49 (213)
286 TIGR01618 phage_P_loop phage n 95.9 0.026 5.7E-07 53.1 7.4 24 67-90 10-33 (220)
287 cd03222 ABC_RNaseL_inhibitor T 95.9 0.0067 1.5E-07 55.1 3.3 26 67-92 23-48 (177)
288 TIGR02315 ABC_phnC phosphonate 95.9 0.0069 1.5E-07 57.1 3.5 26 67-92 26-51 (243)
289 cd03256 ABC_PhnC_transporter A 95.9 0.007 1.5E-07 56.9 3.5 26 67-92 25-50 (241)
290 COG1124 DppF ABC-type dipeptid 95.9 0.0071 1.5E-07 57.4 3.4 25 67-91 31-55 (252)
291 TIGR00635 ruvB Holliday juncti 95.9 0.0081 1.8E-07 58.6 4.0 29 68-96 29-57 (305)
292 cd03229 ABC_Class3 This class 95.9 0.0077 1.7E-07 54.3 3.5 25 67-91 24-48 (178)
293 cd03260 ABC_PstB_phosphate_tra 95.9 0.0074 1.6E-07 56.4 3.6 27 67-93 24-50 (227)
294 PF01695 IstB_IS21: IstB-like 95.9 0.013 2.8E-07 53.3 5.0 33 62-94 40-72 (178)
295 TIGR03608 L_ocin_972_ABC putat 95.8 0.0075 1.6E-07 55.4 3.5 26 67-92 22-47 (206)
296 cd03293 ABC_NrtD_SsuB_transpor 95.8 0.0073 1.6E-07 56.2 3.4 26 67-92 28-53 (220)
297 PLN03046 D-glycerate 3-kinase; 95.8 0.0084 1.8E-07 61.5 4.1 41 68-108 211-253 (460)
298 cd03230 ABC_DR_subfamily_A Thi 95.8 0.0078 1.7E-07 54.0 3.5 26 67-92 24-49 (173)
299 PRK09087 hypothetical protein; 95.8 0.019 4.2E-07 54.1 6.2 33 68-100 43-75 (226)
300 CHL00181 cbbX CbbX; Provisiona 95.8 0.0087 1.9E-07 58.6 3.9 27 68-94 58-84 (287)
301 TIGR03499 FlhF flagellar biosy 95.8 0.009 1.9E-07 58.3 4.0 27 68-94 193-219 (282)
302 cd03258 ABC_MetN_methionine_tr 95.8 0.008 1.7E-07 56.4 3.5 27 67-93 29-55 (233)
303 cd03257 ABC_NikE_OppD_transpor 95.8 0.0078 1.7E-07 56.1 3.4 26 67-92 29-54 (228)
304 PRK14490 putative bifunctional 95.8 0.0087 1.9E-07 60.6 4.0 30 67-96 3-32 (369)
305 PRK09183 transposase/IS protei 95.8 0.015 3.2E-07 56.1 5.3 28 66-93 99-126 (259)
306 cd03265 ABC_DrrA DrrA is the A 95.8 0.0084 1.8E-07 55.8 3.5 25 67-91 24-48 (220)
307 cd03247 ABCC_cytochrome_bd The 95.8 0.0086 1.9E-07 53.9 3.5 26 67-92 26-51 (178)
308 cd03296 ABC_CysA_sulfate_impor 95.8 0.0083 1.8E-07 56.6 3.5 26 67-92 26-51 (239)
309 cd04163 Era Era subfamily. Er 95.8 0.0087 1.9E-07 51.3 3.4 24 68-91 2-25 (168)
310 PRK15177 Vi polysaccharide exp 95.8 0.0083 1.8E-07 55.9 3.5 25 67-91 11-35 (213)
311 cd03301 ABC_MalK_N The N-termi 95.8 0.0086 1.9E-07 55.3 3.5 26 67-92 24-49 (213)
312 PRK10584 putative ABC transpor 95.8 0.0085 1.8E-07 56.0 3.5 26 67-92 34-59 (228)
313 TIGR01978 sufC FeS assembly AT 95.8 0.0082 1.8E-07 56.6 3.5 26 67-92 24-49 (243)
314 PRK14964 DNA polymerase III su 95.8 0.19 4.2E-06 52.8 13.8 30 69-98 35-64 (491)
315 TIGR03864 PQQ_ABC_ATP ABC tran 95.8 0.0085 1.8E-07 56.4 3.5 25 67-91 25-49 (236)
316 TIGR00176 mobB molybdopterin-g 95.8 0.0083 1.8E-07 53.3 3.2 27 71-97 1-27 (155)
317 cd03223 ABCD_peroxisomal_ALDP 95.8 0.009 2E-07 53.4 3.5 26 67-92 25-50 (166)
318 PRK11629 lolD lipoprotein tran 95.8 0.0085 1.8E-07 56.3 3.5 26 67-92 33-58 (233)
319 PF08477 Miro: Miro-like prote 95.8 0.0089 1.9E-07 49.4 3.3 22 72-93 2-23 (119)
320 cd03232 ABC_PDR_domain2 The pl 95.8 0.0085 1.9E-07 54.7 3.4 25 67-91 31-55 (192)
321 PRK14493 putative bifunctional 95.7 0.0091 2E-07 58.1 3.8 29 69-97 1-29 (274)
322 PRK03992 proteasome-activating 95.7 0.0078 1.7E-07 61.4 3.5 31 68-98 164-194 (389)
323 cd03246 ABCC_Protease_Secretio 95.7 0.0093 2E-07 53.5 3.6 26 67-92 26-51 (173)
324 PRK13851 type IV secretion sys 95.7 0.0097 2.1E-07 59.7 4.0 33 62-94 155-187 (344)
325 TIGR03410 urea_trans_UrtE urea 95.7 0.0085 1.8E-07 56.1 3.4 26 67-92 24-49 (230)
326 PF00437 T2SE: Type II/IV secr 95.7 0.011 2.5E-07 56.7 4.4 30 67-96 125-154 (270)
327 cd03268 ABC_BcrA_bacitracin_re 95.7 0.009 2E-07 55.0 3.5 25 67-91 24-48 (208)
328 cd03238 ABC_UvrA The excision 95.7 0.009 2E-07 54.3 3.4 24 67-90 19-42 (176)
329 PRK14729 miaA tRNA delta(2)-is 95.7 0.008 1.7E-07 59.2 3.3 35 69-104 4-38 (300)
330 PRK06620 hypothetical protein; 95.7 0.018 4E-07 53.8 5.6 30 70-99 45-74 (214)
331 cd01120 RecA-like_NTPases RecA 95.7 0.0084 1.8E-07 51.7 3.1 25 71-95 1-25 (165)
332 PRK13541 cytochrome c biogenes 95.7 0.0093 2E-07 54.5 3.5 26 67-92 24-49 (195)
333 COG1703 ArgK Putative periplas 95.7 0.013 2.9E-07 57.2 4.6 40 57-97 40-79 (323)
334 PRK11124 artP arginine transpo 95.7 0.0091 2E-07 56.4 3.5 25 67-91 26-50 (242)
335 PRK05342 clpX ATP-dependent pr 95.7 0.0089 1.9E-07 61.5 3.6 30 70-99 109-138 (412)
336 TIGR02782 TrbB_P P-type conjug 95.7 0.014 3E-07 57.5 4.9 28 67-94 130-157 (299)
337 COG1117 PstB ABC-type phosphat 95.7 0.0088 1.9E-07 56.0 3.2 26 67-92 31-56 (253)
338 cd03264 ABC_drug_resistance_li 95.7 0.0086 1.9E-07 55.3 3.2 31 59-91 17-47 (211)
339 PRK10247 putative ABC transpor 95.7 0.0095 2.1E-07 55.8 3.5 25 67-91 31-55 (225)
340 TIGR01242 26Sp45 26S proteasom 95.7 0.0095 2.1E-07 60.1 3.7 30 69-98 156-185 (364)
341 TIGR00064 ftsY signal recognit 95.7 0.011 2.4E-07 57.4 4.1 27 68-94 71-97 (272)
342 TIGR00382 clpX endopeptidase C 95.7 0.0091 2E-07 61.3 3.6 29 70-98 117-145 (413)
343 PRK00080 ruvB Holliday junctio 95.7 0.0099 2.1E-07 59.0 3.8 30 68-97 50-79 (328)
344 cd03218 ABC_YhbG The ABC trans 95.7 0.0096 2.1E-07 55.8 3.5 26 67-92 24-49 (232)
345 PRK07764 DNA polymerase III su 95.7 0.26 5.7E-06 55.0 15.2 29 69-97 37-65 (824)
346 PRK10463 hydrogenase nickel in 95.7 0.018 4E-07 56.3 5.6 32 63-94 97-129 (290)
347 cd03266 ABC_NatA_sodium_export 95.7 0.0096 2.1E-07 55.2 3.5 25 67-91 29-53 (218)
348 TIGR03771 anch_rpt_ABC anchore 95.7 0.0095 2.1E-07 55.8 3.5 26 67-92 4-29 (223)
349 PF07724 AAA_2: AAA domain (Cd 95.7 0.013 2.8E-07 53.0 4.1 26 70-95 4-29 (171)
350 TIGR00101 ureG urease accessor 95.7 0.011 2.4E-07 54.6 3.9 25 70-94 2-26 (199)
351 KOG1970|consensus 95.7 0.0094 2E-07 62.4 3.6 31 68-98 109-139 (634)
352 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.0099 2.1E-07 51.9 3.3 26 67-92 24-49 (144)
353 PRK13540 cytochrome c biogenes 95.6 0.01 2.2E-07 54.5 3.5 25 67-91 25-49 (200)
354 cd03254 ABCC_Glucan_exporter_l 95.6 0.0099 2.1E-07 55.5 3.5 26 67-92 27-52 (229)
355 PRK14247 phosphate ABC transpo 95.6 0.0098 2.1E-07 56.4 3.5 26 67-92 27-52 (250)
356 PRK14242 phosphate transporter 95.6 0.0098 2.1E-07 56.6 3.5 27 67-93 30-56 (253)
357 COG1219 ClpX ATP-dependent pro 95.6 0.01 2.2E-07 58.5 3.5 29 71-99 99-127 (408)
358 cd03234 ABCG_White The White s 95.6 0.011 2.3E-07 55.4 3.6 27 67-93 31-57 (226)
359 PRK11248 tauB taurine transpor 95.6 0.01 2.2E-07 56.8 3.5 26 67-92 25-50 (255)
360 TIGR02770 nickel_nikD nickel i 95.6 0.01 2.2E-07 55.7 3.4 26 67-92 10-35 (230)
361 cd03237 ABC_RNaseL_inhibitor_d 95.6 0.01 2.2E-07 56.6 3.5 25 68-92 24-48 (246)
362 PRK11264 putative amino-acid A 95.6 0.01 2.3E-07 56.2 3.5 26 67-92 27-52 (250)
363 PRK13833 conjugal transfer pro 95.6 0.016 3.5E-07 57.7 4.9 27 67-93 142-168 (323)
364 PRK14250 phosphate ABC transpo 95.6 0.011 2.3E-07 56.1 3.5 26 67-92 27-52 (241)
365 PRK06893 DNA replication initi 95.6 0.035 7.5E-07 52.4 7.0 25 70-94 40-64 (229)
366 cd03214 ABC_Iron-Siderophores_ 95.6 0.011 2.5E-07 53.3 3.5 25 67-91 23-47 (180)
367 PRK10908 cell division protein 95.6 0.011 2.4E-07 55.1 3.5 25 67-91 26-50 (222)
368 PRK14974 cell division protein 95.6 0.012 2.6E-07 58.9 4.0 28 68-95 139-166 (336)
369 cd03216 ABC_Carb_Monos_I This 95.6 0.011 2.5E-07 52.6 3.5 25 67-91 24-48 (163)
370 TIGR00073 hypB hydrogenase acc 95.6 0.02 4.2E-07 53.0 5.2 29 66-94 19-47 (207)
371 cd03215 ABC_Carb_Monos_II This 95.6 0.011 2.4E-07 53.5 3.4 27 67-93 24-50 (182)
372 TIGR02928 orc1/cdc6 family rep 95.6 0.014 3E-07 58.4 4.5 53 39-94 12-65 (365)
373 PRK10744 pstB phosphate transp 95.6 0.011 2.3E-07 56.7 3.5 27 67-93 37-63 (260)
374 TIGR01184 ntrCD nitrate transp 95.6 0.011 2.4E-07 55.6 3.5 26 67-92 9-34 (230)
375 PRK10895 lipopolysaccharide AB 95.6 0.011 2.4E-07 55.8 3.5 26 67-92 27-52 (241)
376 PRK13539 cytochrome c biogenes 95.6 0.011 2.4E-07 54.5 3.5 26 67-92 26-51 (207)
377 PRK13768 GTPase; Provisional 95.6 0.012 2.5E-07 56.6 3.7 27 69-95 2-28 (253)
378 cd03295 ABC_OpuCA_Osmoprotecti 95.6 0.011 2.4E-07 55.8 3.5 26 67-92 25-50 (242)
379 PTZ00454 26S protease regulato 95.6 0.011 2.3E-07 60.6 3.6 31 68-98 178-208 (398)
380 cd03245 ABCC_bacteriocin_expor 95.6 0.011 2.4E-07 54.8 3.5 26 67-92 28-53 (220)
381 cd03283 ABC_MutS-like MutS-lik 95.6 0.012 2.5E-07 54.5 3.5 23 69-91 25-47 (199)
382 TIGR02323 CP_lyasePhnK phospho 95.5 0.011 2.4E-07 56.2 3.4 26 67-92 27-52 (253)
383 cd03228 ABCC_MRP_Like The MRP 95.5 0.012 2.7E-07 52.6 3.6 26 67-92 26-51 (171)
384 PF03029 ATP_bind_1: Conserved 95.5 0.0085 1.8E-07 57.1 2.6 23 74-96 1-23 (238)
385 cd03298 ABC_ThiQ_thiamine_tran 95.5 0.012 2.6E-07 54.4 3.5 26 67-92 22-47 (211)
386 cd03252 ABCC_Hemolysin The ABC 95.5 0.011 2.5E-07 55.5 3.5 26 67-92 26-51 (237)
387 cd00544 CobU Adenosylcobinamid 95.5 0.011 2.3E-07 53.5 3.1 25 71-95 1-25 (169)
388 PRK09493 glnQ glutamine ABC tr 95.5 0.012 2.5E-07 55.6 3.5 26 67-92 25-50 (240)
389 PRK14262 phosphate ABC transpo 95.5 0.012 2.5E-07 56.0 3.5 26 67-92 27-52 (250)
390 PRK14274 phosphate ABC transpo 95.5 0.012 2.5E-07 56.3 3.5 27 67-93 36-62 (259)
391 PRK13538 cytochrome c biogenes 95.5 0.012 2.6E-07 54.2 3.5 26 67-92 25-50 (204)
392 TIGR00972 3a0107s01c2 phosphat 95.5 0.012 2.6E-07 55.8 3.5 26 67-92 25-50 (247)
393 cd03244 ABCC_MRP_domain2 Domai 95.5 0.012 2.6E-07 54.6 3.5 26 67-92 28-53 (221)
394 PRK14267 phosphate ABC transpo 95.5 0.012 2.5E-07 56.0 3.5 26 67-92 28-53 (253)
395 TIGR03005 ectoine_ehuA ectoine 95.5 0.012 2.5E-07 56.0 3.5 25 67-91 24-48 (252)
396 cd03233 ABC_PDR_domain1 The pl 95.5 0.011 2.4E-07 54.5 3.2 27 67-93 31-57 (202)
397 PRK11247 ssuB aliphatic sulfon 95.5 0.012 2.6E-07 56.6 3.5 26 67-92 36-61 (257)
398 PRK14241 phosphate transporter 95.5 0.012 2.6E-07 56.3 3.5 26 67-92 28-53 (258)
399 PRK11300 livG leucine/isoleuci 95.5 0.012 2.6E-07 56.0 3.5 26 67-92 29-54 (255)
400 PRK13764 ATPase; Provisional 95.5 0.015 3.3E-07 62.3 4.6 35 61-95 249-283 (602)
401 TIGR01189 ccmA heme ABC export 95.5 0.013 2.8E-07 53.7 3.6 26 67-92 24-49 (198)
402 PRK13894 conjugal transfer ATP 95.5 0.019 4E-07 57.2 4.9 27 67-93 146-172 (319)
403 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.5 0.012 2.6E-07 55.4 3.4 26 67-92 27-52 (238)
404 cd03253 ABCC_ATM1_transporter 95.5 0.012 2.7E-07 55.1 3.5 26 67-92 25-50 (236)
405 PF03193 DUF258: Protein of un 95.5 0.019 4.2E-07 51.4 4.5 34 58-93 26-59 (161)
406 PRK11701 phnK phosphonate C-P 95.5 0.012 2.6E-07 56.2 3.4 26 67-92 30-55 (258)
407 TIGR02324 CP_lyasePhnL phospho 95.5 0.013 2.8E-07 54.6 3.5 26 67-92 32-57 (224)
408 cd03250 ABCC_MRP_domain1 Domai 95.5 0.013 2.8E-07 53.8 3.5 26 67-92 29-54 (204)
409 COG1134 TagH ABC-type polysacc 95.5 0.064 1.4E-06 51.0 8.1 27 67-93 51-77 (249)
410 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.4 0.013 2.7E-07 55.0 3.4 25 67-91 46-70 (224)
411 PRK14255 phosphate ABC transpo 95.4 0.013 2.8E-07 55.7 3.5 25 67-91 29-53 (252)
412 TIGR02524 dot_icm_DotB Dot/Icm 95.4 0.019 4.1E-07 58.0 4.9 28 66-93 131-158 (358)
413 TIGR01277 thiQ thiamine ABC tr 95.4 0.013 2.8E-07 54.3 3.4 26 67-92 22-47 (213)
414 PRK04296 thymidine kinase; Pro 95.4 0.014 3E-07 53.5 3.6 25 69-93 2-26 (190)
415 PRK13543 cytochrome c biogenes 95.4 0.013 2.9E-07 54.3 3.5 26 67-92 35-60 (214)
416 cd03251 ABCC_MsbA MsbA is an e 95.4 0.013 2.9E-07 54.8 3.5 27 67-93 26-52 (234)
417 PRK10771 thiQ thiamine transpo 95.4 0.013 2.9E-07 55.0 3.4 26 67-92 23-48 (232)
418 PRK14722 flhF flagellar biosyn 95.4 0.015 3.2E-07 59.0 3.9 27 67-93 135-161 (374)
419 PRK10575 iron-hydroxamate tran 95.4 0.012 2.7E-07 56.5 3.2 26 67-92 35-60 (265)
420 CHL00195 ycf46 Ycf46; Provisio 95.4 0.013 2.9E-07 61.4 3.8 31 68-98 258-288 (489)
421 PRK13648 cbiO cobalt transport 95.4 0.013 2.9E-07 56.3 3.5 26 67-92 33-58 (269)
422 cd03267 ABC_NatA_like Similar 95.4 0.014 3E-07 55.2 3.5 26 67-92 45-70 (236)
423 PRK14240 phosphate transporter 95.4 0.014 3E-07 55.4 3.5 26 67-92 27-52 (250)
424 PRK08084 DNA replication initi 95.4 0.041 8.9E-07 52.1 6.7 28 68-95 44-71 (235)
425 PRK14239 phosphate transporter 95.4 0.014 3E-07 55.5 3.5 26 67-92 29-54 (252)
426 cd01129 PulE-GspE PulE/GspE Th 95.4 0.025 5.5E-07 54.7 5.3 30 65-94 76-105 (264)
427 PRK15056 manganese/iron transp 95.4 0.013 2.9E-07 56.5 3.4 26 67-92 31-56 (272)
428 PRK14256 phosphate ABC transpo 95.4 0.014 3E-07 55.5 3.5 27 67-93 28-54 (252)
429 COG3638 ABC-type phosphate/pho 95.4 0.014 3.1E-07 55.3 3.4 25 67-91 28-52 (258)
430 PRK14269 phosphate ABC transpo 95.4 0.014 3.1E-07 55.3 3.5 26 67-92 26-51 (246)
431 PRK14261 phosphate ABC transpo 95.4 0.014 3E-07 55.6 3.5 26 67-92 30-55 (253)
432 PRK14248 phosphate ABC transpo 95.4 0.014 3E-07 56.1 3.5 26 67-92 45-70 (268)
433 PRK14251 phosphate ABC transpo 95.4 0.014 3.1E-07 55.4 3.5 26 67-92 28-53 (251)
434 PRK13638 cbiO cobalt transport 95.3 0.013 2.8E-07 56.5 3.3 26 67-92 25-50 (271)
435 PRK09544 znuC high-affinity zi 95.3 0.014 3.1E-07 55.7 3.5 26 67-92 28-53 (251)
436 PRK14245 phosphate ABC transpo 95.3 0.014 3.1E-07 55.4 3.5 26 67-92 27-52 (250)
437 KOG0991|consensus 95.3 0.02 4.4E-07 54.3 4.3 36 59-94 33-73 (333)
438 cd03369 ABCC_NFT1 Domain 2 of 95.3 0.015 3.3E-07 53.5 3.5 26 67-92 32-57 (207)
439 cd01983 Fer4_NifH The Fer4_Nif 95.3 0.016 3.5E-07 45.3 3.2 25 71-95 1-25 (99)
440 PRK13645 cbiO cobalt transport 95.3 0.014 3E-07 56.9 3.4 26 67-92 35-60 (289)
441 cd03236 ABC_RNaseL_inhibitor_d 95.3 0.015 3.3E-07 55.9 3.5 26 67-92 24-49 (255)
442 cd03297 ABC_ModC_molybdenum_tr 95.3 0.015 3.2E-07 53.9 3.4 23 70-92 24-46 (214)
443 cd01394 radB RadB. The archaea 95.3 0.02 4.4E-07 53.1 4.3 27 67-93 17-43 (218)
444 cd03248 ABCC_TAP TAP, the Tran 95.3 0.015 3.3E-07 54.2 3.5 26 67-92 38-63 (226)
445 PRK14259 phosphate ABC transpo 95.3 0.015 3.2E-07 56.2 3.5 26 67-92 37-62 (269)
446 cd03294 ABC_Pro_Gly_Bertaine T 95.3 0.015 3.2E-07 56.1 3.5 26 67-92 48-73 (269)
447 TIGR02880 cbbX_cfxQ probable R 95.3 0.016 3.5E-07 56.6 3.7 27 69-95 58-84 (284)
448 PRK13649 cbiO cobalt transport 95.3 0.014 3.1E-07 56.4 3.4 26 67-92 31-56 (280)
449 PRK14235 phosphate transporter 95.3 0.015 3.3E-07 55.9 3.6 27 67-93 43-69 (267)
450 PRK11831 putative ABC transpor 95.3 0.015 3.2E-07 56.1 3.4 26 67-92 31-56 (269)
451 CHL00131 ycf16 sulfate ABC tra 95.3 0.014 3E-07 55.4 3.2 25 67-91 31-55 (252)
452 cd03290 ABCC_SUR1_N The SUR do 95.3 0.016 3.4E-07 53.9 3.5 27 67-93 25-51 (218)
453 TIGR02769 nickel_nikE nickel i 95.3 0.015 3.3E-07 55.8 3.5 26 67-92 35-60 (265)
454 PRK13632 cbiO cobalt transport 95.3 0.015 3.3E-07 56.1 3.5 26 67-92 33-58 (271)
455 cd03213 ABCG_EPDR ABCG transpo 95.3 0.016 3.4E-07 53.1 3.4 26 67-92 33-58 (194)
456 TIGR00750 lao LAO/AO transport 95.3 0.018 3.9E-07 56.6 4.0 29 67-95 32-60 (300)
457 PRK11331 5-methylcytosine-spec 95.3 0.024 5.1E-07 58.7 5.0 38 57-95 183-220 (459)
458 PRK13547 hmuV hemin importer A 95.3 0.015 3.3E-07 56.3 3.4 27 67-93 25-51 (272)
459 PRK08181 transposase; Validate 95.3 0.044 9.6E-07 53.2 6.6 30 64-93 101-130 (269)
460 COG4167 SapF ABC-type antimicr 95.2 0.015 3.3E-07 53.2 3.2 25 67-91 37-61 (267)
461 PRK14253 phosphate ABC transpo 95.2 0.016 3.6E-07 54.9 3.5 27 67-93 27-53 (249)
462 PRK09984 phosphonate/organopho 95.2 0.016 3.4E-07 55.5 3.4 26 67-92 28-53 (262)
463 PRK11614 livF leucine/isoleuci 95.2 0.015 3.3E-07 54.7 3.2 25 67-91 29-53 (237)
464 TIGR03411 urea_trans_UrtD urea 95.2 0.016 3.5E-07 54.6 3.5 26 67-92 26-51 (242)
465 PRK10419 nikE nickel transport 95.2 0.016 3.4E-07 55.9 3.4 25 67-91 36-60 (268)
466 PRK14244 phosphate ABC transpo 95.2 0.017 3.6E-07 55.0 3.5 26 67-92 29-54 (251)
467 TIGR01241 FtsH_fam ATP-depende 95.2 0.016 3.5E-07 60.9 3.7 31 69-99 88-118 (495)
468 PRK13548 hmuV hemin importer A 95.2 0.016 3.5E-07 55.5 3.4 26 67-92 26-51 (258)
469 cd03231 ABC_CcmA_heme_exporter 95.2 0.017 3.7E-07 53.1 3.5 26 67-92 24-49 (201)
470 PRK14238 phosphate transporter 95.2 0.017 3.6E-07 55.8 3.6 27 67-93 48-74 (271)
471 PRK14273 phosphate ABC transpo 95.2 0.017 3.6E-07 55.0 3.5 27 67-93 31-57 (254)
472 PRK09580 sufC cysteine desulfu 95.2 0.015 3.3E-07 54.9 3.2 26 67-92 25-50 (248)
473 COG1125 OpuBA ABC-type proline 95.2 0.017 3.6E-07 55.5 3.3 25 67-91 25-49 (309)
474 PRK14952 DNA polymerase III su 95.2 0.4 8.7E-06 51.6 14.2 28 69-96 35-62 (584)
475 PRK14270 phosphate ABC transpo 95.2 0.017 3.7E-07 54.9 3.5 26 67-92 28-53 (251)
476 PRK13647 cbiO cobalt transport 95.2 0.016 3.6E-07 56.0 3.4 26 67-92 29-54 (274)
477 PRK14268 phosphate ABC transpo 95.2 0.017 3.7E-07 55.2 3.5 26 67-92 36-61 (258)
478 COG4185 Uncharacterized protei 95.2 0.15 3.3E-06 45.7 9.1 21 70-90 3-23 (187)
479 PRK04195 replication factor C 95.2 0.016 3.4E-07 60.8 3.5 30 69-98 39-68 (482)
480 PRK14237 phosphate transporter 95.2 0.018 3.8E-07 55.5 3.6 27 67-93 44-70 (267)
481 cd03217 ABC_FeS_Assembly ABC-t 95.2 0.018 3.9E-07 52.9 3.5 26 67-92 24-49 (200)
482 PRK13342 recombination factor 95.2 0.018 3.9E-07 59.2 3.8 31 68-98 35-65 (413)
483 PF01926 MMR_HSR1: 50S ribosom 95.2 0.016 3.5E-07 48.0 2.9 20 72-91 2-21 (116)
484 PRK14249 phosphate ABC transpo 95.2 0.018 3.8E-07 54.8 3.5 27 67-93 28-54 (251)
485 PRK10619 histidine/lysine/argi 95.2 0.018 3.8E-07 55.1 3.5 26 67-92 29-54 (257)
486 PF06309 Torsin: Torsin; Inte 95.2 0.028 6.2E-07 48.3 4.4 32 66-97 50-81 (127)
487 COG0714 MoxR-like ATPases [Gen 95.2 0.016 3.4E-07 57.6 3.3 30 69-98 43-72 (329)
488 TIGR03740 galliderm_ABC gallid 95.2 0.018 4E-07 53.6 3.5 26 67-92 24-49 (223)
489 PTZ00361 26 proteosome regulat 95.1 0.018 3.9E-07 59.7 3.7 31 68-98 216-246 (438)
490 TIGR00968 3a0106s01 sulfate AB 95.1 0.019 4E-07 54.3 3.5 26 67-92 24-49 (237)
491 PRK14272 phosphate ABC transpo 95.1 0.018 4E-07 54.6 3.5 27 67-93 28-54 (252)
492 PRK13900 type IV secretion sys 95.1 0.023 5E-07 56.8 4.3 28 67-94 158-185 (332)
493 COG1122 CbiO ABC-type cobalt t 95.1 0.018 3.8E-07 54.9 3.3 25 67-91 28-52 (235)
494 PRK14260 phosphate ABC transpo 95.1 0.019 4E-07 55.0 3.5 27 67-93 31-57 (259)
495 TIGR02868 CydC thiol reductant 95.1 0.017 3.6E-07 61.0 3.5 25 67-91 359-383 (529)
496 PRK15112 antimicrobial peptide 95.1 0.019 4E-07 55.3 3.5 26 67-92 37-62 (267)
497 PRK00411 cdc6 cell division co 95.1 0.022 4.8E-07 57.6 4.2 28 67-94 53-80 (394)
498 PF06068 TIP49: TIP49 C-termin 95.1 0.03 6.4E-07 56.5 4.9 30 66-95 47-76 (398)
499 PRK14243 phosphate transporter 95.1 0.019 4.2E-07 55.1 3.6 27 67-93 34-60 (264)
500 PRK06851 hypothetical protein; 95.1 0.066 1.4E-06 54.2 7.4 26 69-94 214-239 (367)
No 1
>KOG3877|consensus
Probab=100.00 E-value=1.6e-83 Score=599.50 Aligned_cols=359 Identities=36% Similarity=0.575 Sum_probs=332.1
Q ss_pred hhhhhccccccCCCCCCCCCCCCCCCCCCchhhhHH-HHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCC
Q psy6807 23 VLSVARFISSKHNADLRRPPPYPYETRDFKFPWTLM-EDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPA 101 (395)
Q Consensus 23 ~~~~~~~i~~~~~~~~~~~~pf~~~~~~~~~~~~~~-~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~ 101 (395)
..-|.||..+++|+..++..|+|++.+.|+.+..++ |+|++||++++++|+|+|++|||||++|+.||++||+.++|+.
T Consensus 24 aa~qqRg~~~rg~~r~ps~~p~p~~~k~y~~~~~~l~Dktskrf~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~ 103 (393)
T KOG3877|consen 24 AANQQRGVVHRGLLRLPSEHPEPWDYKHYFNYIDGLKDKTSKRFHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEF 103 (393)
T ss_pred hhhhhcceeecCCccCCccCCCCcccccccchhhhhcchhhhhhcccceEEEEeCCcccCchhHHHHHHHHhCCcccccc
Confidence 344678888888664444444444444577777765 9999999999999999999999999999999999999999999
Q ss_pred cccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcc
Q psy6807 102 NMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFS 180 (395)
Q Consensus 102 ~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~S 180 (395)
.+|..|++ +|.|++.+...+ |.+|+..+...||.||++..++.+|.+++.+|+.||++||+|+|+||||||+|||++|
T Consensus 104 ~~d~iyvdsyg~D~r~l~~~~-p~~cr~~di~~Fy~dPS~dlsa~~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~S 182 (393)
T KOG3877|consen 104 RMDDIYVDSYGNDLRNLYNKF-PARCRLPDISMFYKDPSGDLSAAMQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHS 182 (393)
T ss_pred cccceeecccCccchhccccC-CcccCchhHHHhccCCCccHHHHHHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcch
Confidence 99999999 999999999999 9999999999999999888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHH
Q psy6807 181 DFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYK 260 (395)
Q Consensus 181 d~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk 260 (395)
||||++||+.+|||+.+++++|+++..+.++++++||+|||||+|...|++||++||.+.|.. .++..||+.++++|+
T Consensus 183 DFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~~v~~~Ik~rg~~~Eik--~~s~aYL~diE~~YK 260 (393)
T KOG3877|consen 183 DFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVNKVLENIKRRGNTDEIK--TVSEAYLKDIEESYK 260 (393)
T ss_pred hHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcHHHHHHHHhcCCCccee--ehhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999984 467799999999999
Q ss_pred hhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhhcccccc-ccccccccccchhHHHHHhh-hhhccchhHhhhhhcc
Q psy6807 261 NNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFDHYDHF-SNKMREWRQLTTKEWNNLRM-LYADEKSDLMTAFNTV 338 (395)
Q Consensus 261 ~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f~~~~~~-~~~~~~w~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~ 338 (395)
+.|++++++++++++||||..|+.+.|+||||+|+||+++|+ ..++.-|+...|..|.+.|. +++| |.+++||++ |
T Consensus 261 ~~fL~e~s~h~eiL~Ydwt~~gdt~~VVEDIErldfd~few~~~d~~~lw~~~~~~~~~~~r~~yv~~-K~d~~ny~~-i 338 (393)
T KOG3877|consen 261 DSFLREYSNHSEILAYDWTKPGDTDAVVEDIERLDFDFFEWHSGDVMELWNTIVDSVGWNGRRQYVTN-KYDARNYDG-I 338 (393)
T ss_pred HHHHHHHhhhhheeeeecccCCCchhHHHhhhhhccccccccccchHhhhcchhhhhhhhHHHHHHhc-cHhhhcccC-C
Confidence 999999999999999999999999999999999999999998 55666699998877777766 6666 999999999 9
Q ss_pred CCCCCCceeecchhhhHHHHHHHhCCCCcCCCCCCCCC--CcccccccCC
Q psy6807 339 ERYDCPELAYTGDDMMEIEEKLSKTPEFYYTKGFNPVK--DNVWWKTNTD 386 (395)
Q Consensus 339 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~n~~~--~~~~~~~~~~ 386 (395)
|+||+|||+++|+|.+++.++|+++||+||.||||+++ +|+|+|++..
T Consensus 339 P~f~vpEl~~~a~dt~~~lhv~r~~pg~kY~pGYna~~GD~~~~lk~~~~ 388 (393)
T KOG3877|consen 339 PKFEVPELYTNARDTGHFLHVMRKEPGKKYGPGYNAKNGDHQAGLKAWHT 388 (393)
T ss_pred cccccchheecccccchHHHHHHhccCCcCCCCcccccchhHHhhhhhhh
Confidence 99999999999999999999999999999999999999 9999998754
No 2
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=100.00 E-value=3.1e-33 Score=261.94 Aligned_cols=215 Identities=44% Similarity=0.751 Sum_probs=181.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCCCCccccc-ccc-CCCccccchhhhhhhhhhhhhhhhhcCCCC--CcccHHH
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMF-YKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPK--HFHTIAF 146 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~-~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~--~~~~~~~ 146 (395)
+|+|+|++||||||+++.|+++++..+++++..... ..+ .|..+.+. ..+...++.|+.+|. ..+++.+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~ 73 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPA-------FNGNCSLEKFYDDPKSNDGNSYRL 73 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccc-------cCCCcCHHHHhcCCcccCCcchHH
Confidence 599999999999999999999999888877632221 111 33333311 112234678898887 4678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
|++++.+|+.++.+.+.+.+..|+.||+|||++|++||+.+++++|++.+.++..|.++...+...++.||++|||++|+
T Consensus 74 q~~~~~~R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~ 153 (219)
T cd02030 74 QSWMYSSRLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPV 153 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCH
Confidence 99999999999988888888999999999999999999999999999999999999999988778888999999999999
Q ss_pred HHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 227 SKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 227 e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
+++++|+++||++.|.. ++.+|++.+++.|++++.+.+.+.++++++|+++.++++.|+++|+.++
T Consensus 154 ~~~~~Ri~~R~~~~e~~---~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~~~~~~e~i~~~I~~~~ 219 (219)
T cd02030 154 PEVQKRIKKRGDPHEMK---VTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVVEDIEYLK 219 (219)
T ss_pred HHHHHHHHHcCCchhhc---ccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCCChhhHHHHHHHHHccC
Confidence 99999999999987774 8899999999999999876555678999999888899999999998764
No 3
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.97 E-value=3.1e-29 Score=229.12 Aligned_cols=195 Identities=27% Similarity=0.410 Sum_probs=160.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQI 148 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql 148 (395)
.++|+|+|++|+||||||++||++||...+.|...++++ ++.||.+|+ ++++.+|+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~-----------------------L~~FY~d~~-~yaf~~Qi 59 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPF-----------------------LDLFYEDPE-RYAFLLQI 59 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChH-----------------------HHHHHHhHH-HhhHHHHH
Confidence 579999999999999999999999999888887665522 478999998 68999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchH-HHHHHHHhcCCCChhHHHHHHHHHHH---hCCCCC-CCCEEEEEE
Q psy6807 149 RMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDF-IFIEAMDKCGYITKRHKDIYYEITRF---TLPPLF-KPHLVIYLD 223 (395)
Q Consensus 149 ~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~-vf~~a~~~~g~i~~~~~~~y~~~~~~---~~~~l~-~PdlvIyLd 223 (395)
+|+..|+.++..+. +.+. .|+|||+|+|+ +|+...+..|.+++.+++.|.++++. ....++ .||++|||+
T Consensus 60 yFL~~Rfk~~k~~~----~~~~-~i~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd 134 (216)
T COG1428 60 YFLLNRFKKIKKAL----SDKN-NILDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLD 134 (216)
T ss_pred HHHHHHHHHHHHHh----cccc-cccCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEe
Confidence 99999999876654 4444 89999999998 99999999999999999999999996 345566 899999999
Q ss_pred CChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCC------CCCChhHHHHHHHHh
Q psy6807 224 IPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWS------DGGDPEVVVEDIERI 294 (395)
Q Consensus 224 ~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t------~~~~~e~V~edIe~l 294 (395)
|+.+++++||.+|||++|.....-..+|++.+...|+.|+... ..|+++.+|.. +.++.+.|+..|.++
T Consensus 135 ~~~e~~l~RI~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~--~~~~~l~i~~~~~D~~~~~~d~~~v~~~I~~~ 209 (216)
T COG1428 135 ASLETLLRRIAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENY--DACPVLGIDGDSIDFVNNEQDLEKVLDQILAK 209 (216)
T ss_pred CCHHHHHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHHhc--ccCCeeeeccceecccCCHHHHHHHHHHHHHH
Confidence 9999999999999999997533333579999999999998642 23677777643 333455555555553
No 4
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.95 E-value=2.5e-26 Score=210.15 Aligned_cols=185 Identities=37% Similarity=0.561 Sum_probs=151.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHHH
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIRM 150 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~~ 150 (395)
+|+|+|++||||||+++.|++.++...++|+.-.. ..+ ...++.|+.+|. ..++.+|+++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~~~---~~~----------------~~~l~~~~~~~~-~~~~~~q~~~ 60 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVEPD---VEG----------------NPFLEKFYEDPK-RWAFPFQLYF 60 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcccccccccc---CCC----------------CCCHHHHHhCHH-hccHHHHHHH
Confidence 58999999999999999999999888777763100 000 001356777765 4678999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHHH
Q psy6807 151 LQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVK 230 (395)
Q Consensus 151 ~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~~ 230 (395)
+.+|+.++.+++.+ +..|+.||+|||++|+++|+.+++.+|.+.+.+++.|.++...+....+.||++|||++|+++++
T Consensus 61 ~~~r~~~~~~~~~~-~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~ 139 (193)
T cd01673 61 LLSRLKQYKDALEH-LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCL 139 (193)
T ss_pred HHHHHHHHHHHHhh-cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHH
Confidence 99999998887765 67899999999999999999998888888888899999998877766788999999999999999
Q ss_pred HHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCC
Q psy6807 231 ENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWS 279 (395)
Q Consensus 231 eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t 279 (395)
+|+++|++..|.. .+.+|++.+++.|+.++.......++++++|++
T Consensus 140 ~Ri~~R~r~~e~~---~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~ 185 (193)
T cd01673 140 KRIKKRGRPEEQG---IPLDYLEDLHEAYEKWFLPQMYEKAPVLIIDAN 185 (193)
T ss_pred HHHHhcCcHhhhc---CCHHHHHHHHHHHHHHHhhccCCCCCEEEEECC
Confidence 9999999977753 578999999999999886422235789999954
No 5
>KOG4235|consensus
Probab=99.89 E-value=6.4e-23 Score=184.28 Aligned_cols=184 Identities=20% Similarity=0.294 Sum_probs=145.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhcc--ccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDM--IALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~--~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
+..|+|++|+||||+.+.++++... ..++||+... .+ .|.. ...++.+|.+|+ ++++.+|
T Consensus 24 ~~~iEGNIa~GKsTfl~~~~~~t~~~~ev~tEPV~kW--~nV~~~~--------------~n~L~~mY~ep~-Rws~tfQ 86 (244)
T KOG4235|consen 24 LSIIEGNIAVGKSTFLNFFLNKTYEEWEVLTEPVAKW--QNVQGAN--------------ANLLDMMYREPA-RWSYTFQ 86 (244)
T ss_pred eEEEecccccchHHHHHHHHhccCccceecCchHHHH--hcccccc--------------ccHHHHHhhchH-hheehhh
Confidence 3449999999999999988876543 2467765322 11 1111 123688999998 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeE-EEeccCcch-HHHHHHHHhcCCCChhHHHHHHHHHHHhCCCC-CCCCEEEEEEC
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGA-IVQRCPFSD-FIFIEAMDKCGYITKRHKDIYYEITRFTLPPL-FKPHLVIYLDI 224 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~V-IlDRs~~Sd-~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l-~~PdlvIyLd~ 224 (395)
.+.+..|+.+.... .+..+.| |++||+||| |+|++++++.|.+.+.++..|.+|++.+.... ..+|.+|||++
T Consensus 87 tYv~ltrL~~~~~p----~~~~kpvrimERSv~SdRyiFv~nl~esg~m~e~e~~iy~eW~d~i~~~~~v~~dgiIYLra 162 (244)
T KOG4235|consen 87 TYVFLTRLKVQLEP----FNGRKPVRIMERSVYSDRYIFVENLYESGSMNEVEYVIYQEWFDWILRSMDVSLDGIIYLRA 162 (244)
T ss_pred HHHHHHHHHHHhcC----CCCCCCeehhhhhhhhhHHHHHHHHHhcCCcccchhhhHHHHHHHHHhccccccceEEEeec
Confidence 99998887654322 1122344 999999999 79999999999999999999999999877665 67899999999
Q ss_pred ChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccC---CCCcEEEEeC
Q psy6807 225 PVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQIS---DSSELLVYDW 278 (395)
Q Consensus 225 p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~---~~~~vli~D~ 278 (395)
+|++|.+||..|+|..|+. |+++||+.++...+.|.+..-- ..++++++|+
T Consensus 163 sPetc~~Ri~~R~R~EE~g---ipL~YLe~LH~~HE~WLi~~~f~~lq~vpvLVLDa 216 (244)
T KOG4235|consen 163 SPETCYKRIYLRAREEEKG---IPLKYLEALHELHESWLIKLHFPNLQAVPVLVLDA 216 (244)
T ss_pred ChHHHHHHHHHHhhhhhcC---CcHHHHHHHHHHHHHHHHHHhhhHhhcCCeEEEec
Confidence 9999999999999999986 8999999999999998764322 3578999993
No 6
>PRK07933 thymidylate kinase; Validated
Probab=99.88 E-value=1.5e-21 Score=182.43 Aligned_cols=200 Identities=19% Similarity=0.161 Sum_probs=132.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCC-c-cccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDF-D-WRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~-d-~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
++|+|+|++||||||+++.|++.|.........+..+ ..|. . .+.+...+ . ....+. ..+....+
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P--~~~~~~~g~~ir~~l---------~-~~~~~~-~~~~~~~~ 67 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP--RYGRSVHADLAAEAL---------H-GRHGDL-ADSVYAMA 67 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC--CCCCCCccHHHHHHH---------c-CCCCcc-cCCHHHHH
Confidence 5899999999999999999999997654321111110 0010 0 01111111 1 111111 12356777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChH
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVS 227 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e 227 (395)
+.|.++|..+. ..+...+..|..||+||+++|+++|+.+....+. . .....+..........++.||++||||+|++
T Consensus 68 llf~a~R~~~~-~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e 144 (213)
T PRK07933 68 TLFALDRAGAR-DELAGLLAAHDVVILDRYVASNAAYSAARLHQDA-D-GEAVAWVAELEFGRLGLPVPDLQVLLDVPVE 144 (213)
T ss_pred HHHhhhhhhhH-HHHHHHHhCCCEEEECCccchhHHHhccCCCccc-c-hHHHHHHHHHHHhhcCCCCCCEEEEecCCHH
Confidence 88888998775 5677788899999999999999999754311111 1 1112222222222234578999999999999
Q ss_pred HHHHHHhhcCCc--------cccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 228 KVKENVKKRNNP--------WEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 228 ~~~eRI~~Rgr~--------~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
+.++|+++|++. +|. ..+|++++.+.|.+..... .+..++++| +.+++++|.++|...
T Consensus 145 ~a~~Ri~~R~~~~~~~~~d~~E~-----~~~f~~~v~~~Y~~~~~~~--~~~~~~~id--a~~~~e~v~~~i~~~ 210 (213)
T PRK07933 145 LAAERARRRAAQDADRARDAYER-----DDGLQQRTGAVYAELAAQG--WGGPWLVVD--PDVDPAALAARLAAA 210 (213)
T ss_pred HHHHHHHhhccccCCcccccccc-----cHHHHHHHHHHHHHHHHhc--CCCCeEEeC--CCCCHHHHHHHHHHH
Confidence 999999999753 332 3799999999999876432 235788899 678999999999764
No 7
>PLN02924 thymidylate kinase
Probab=99.86 E-value=8.5e-21 Score=178.05 Aligned_cols=189 Identities=20% Similarity=0.274 Sum_probs=131.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCC-ccccchhhhhhhhhhhhhhhhhcCCCCCcccHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDF-DWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIA 145 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~-d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~ 145 (395)
+.+++|+|+|++||||||+++.|++.|+..++....+.. ...+. ..+.+ ..+..+........
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~e--p~~~~~~g~~i--------------r~~l~~~~~~~~~~ 77 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRF--PDRTTSVGQMI--------------SAYLSNKSQLDDRA 77 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeC--CCCCChHHHHH--------------HHHHhCCCCCCHHH
Confidence 567899999999999999999999999877654321111 00000 01111 11121111123445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECC
Q psy6807 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIP 225 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p 225 (395)
..+.+.++|+.+. ..+...+.+|+.||+||+++|+++|+.+ .| + ..+ +.......++.||++||||+|
T Consensus 78 ~~llf~adR~~~~-~~I~pal~~g~vVI~DRy~~S~~ayq~~---~g-~---~~~----~~~~~~~~~~~PDlvi~Ld~~ 145 (220)
T PLN02924 78 IHLLFSANRWEKR-SLMERKLKSGTTLVVDRYSYSGVAFSAA---KG-L---DLE----WCKAPEVGLPAPDLVLYLDIS 145 (220)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHCCCEEEEccchhHHHHHHHh---cC-C---CHH----HHHHHHhCCCCCCEEEEEeCC
Confidence 5567788888764 6688889999999999999999999753 23 1 122 222222456789999999999
Q ss_pred hHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhhc
Q psy6807 226 VSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFD 297 (395)
Q Consensus 226 ~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f~ 297 (395)
++++++|+..++...| ..+|++++.+.|.+... ..+.++| +.+++|+|.++|..+...
T Consensus 146 ~~~a~~R~~~~~~~~E------~~~~~~rv~~~Y~~la~------~~~~vID--a~~sieeV~~~I~~~I~~ 203 (220)
T PLN02924 146 PEEAAERGGYGGERYE------KLEFQKKVAKRFQTLRD------SSWKIID--ASQSIEEVEKKIREVVLD 203 (220)
T ss_pred HHHHHHHhccCccccc------cHHHHHHHHHHHHHHhh------cCEEEEC--CCCCHHHHHHHHHHHHHH
Confidence 9999999875554444 37999999999987542 3577889 779999999999875544
No 8
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.86 E-value=2.5e-20 Score=171.28 Aligned_cols=197 Identities=18% Similarity=0.211 Sum_probs=130.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
++++|+|+|++||||||+++.|++.|+...........+ .+.. +... .+..... ...+ .......
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p---~~~~---~~~~-----~~~~~~~-~~~~---~~~~~~~ 66 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREP---GGTP---LGEK-----LRELLLD-PNEE---MDDKTEL 66 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCC---CCCh---HHHH-----HHHHHhc-cccC---CCHHHHH
Confidence 478999999999999999999999885432211111000 0000 0000 0111111 0112 2244555
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChH
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVS 227 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e 227 (395)
+.++.+|+.+....+...+..|..||+||+++|+++|+.+.. |. ..+.+..+.... ...+.||++|||++|++
T Consensus 67 ~~~~~~r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~--~~----~~~~~~~l~~~~-~~~~~pd~~i~l~~~~~ 139 (205)
T PRK00698 67 LLFYAARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGR--GL----DIDLLLALNDFA-LGGFRPDLTLYLDVPPE 139 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCC--CC----CHHHHHHHHHHH-hCCCCCCEEEEEeCCHH
Confidence 567788888887777777889999999999999999865421 21 233444443332 23367999999999999
Q ss_pred HHHHHHhhcCCc--cccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 228 KVKENVKKRNNP--WEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 228 ~~~eRI~~Rgr~--~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
++.+|+.+|+.. .+. -+.+|++.+...|+..... ....++++| +.+++++|.++|..+-
T Consensus 140 ~~~~Rl~~R~~~~~~~~----~~~~~~~~~~~~y~~~~~~---~~~~~~~Id--~~~~~e~v~~~i~~~i 200 (205)
T PRK00698 140 VGLARIRARGELDRIEQ----EGLDFFERVREGYLELAEK---EPERIVVID--ASQSLEEVHEDILAVI 200 (205)
T ss_pred HHHHHHHhcCCcchhhh----hhHHHHHHHHHHHHHHHHh---CCCeEEEEe--CCCCHHHHHHHHHHHH
Confidence 999999999842 222 2468999999888876432 234688899 6689999999997754
No 9
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=99.86 E-value=8.3e-22 Score=173.55 Aligned_cols=124 Identities=34% Similarity=0.542 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcc-hHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCC-CCEEEEEE
Q psy6807 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFS-DFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFK-PHLVIYLD 223 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~S-d~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~-PdlvIyLd 223 (395)
+|++++.+|+.++.+ ..+++++|+|||++| ++||+.++++.|++++.++..|.+++..+...++. ||++|||+
T Consensus 1 ~Q~~~l~~R~~~~~~-----~~~~~~~i~eRsi~sd~~vF~~~~~~~g~l~~~e~~~Y~~~~~~l~~~~~~~pdl~IYL~ 75 (146)
T PF01712_consen 1 FQLYFLLSRFEQYKE-----LNTKQNVIMERSIYSDDFVFAKMLFKSGYLSKEEYDLYDKLFDELIEEIPKSPDLIIYLD 75 (146)
T ss_dssp HHHHHHHHHHHHHHH-----STSSSEEEEES-HHHHHHTHHHHHHHTTSS-HHHHHHHHHHHHHHHHHCCHH-SEEEEEE
T ss_pred CcHHHHHHHHHHHHH-----HhcCCCceecCCeeechHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccCCeEEEEe
Confidence 689999999998765 468999999999999 78999999999999999999999999999899988 99999999
Q ss_pred CChHHHHHHHhhcCCccccCCCCCcHHHHHHHH-HHHHhhcccccCCCCcEEEEeCC
Q psy6807 224 IPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIE-DLYKNNYLPQISDSSELLVYDWS 279 (395)
Q Consensus 224 ~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~-~~Yk~~~l~~~~~~~~vli~D~t 279 (395)
+|+++|++||++|||+.|.+ ++.+|++.++ +.|+.|+.. ...++++++|++
T Consensus 76 ~~~e~~~~RI~kRgR~~E~~---i~~~Yl~~L~~~~y~~~~~~--~~~~~vl~id~~ 127 (146)
T PF01712_consen 76 ASPETCLERIKKRGREEEKN---IPLEYLERLHEEAYEDWLKK--YDSTPVLVIDAD 127 (146)
T ss_dssp --HHHHHHHHHHCTTGGGTT---S-HHHHHHHHHHHHCCHHSC--CTTTTGCEEEEC
T ss_pred CCHHHHHHHHHHhCCchhcC---CCHHHHHHHhHHHHHHHHHh--CCCCceEEEECC
Confidence 99999999999999999976 8999999999 899999864 235789999954
No 10
>PRK13976 thymidylate kinase; Provisional
Probab=99.86 E-value=4.5e-20 Score=171.91 Aligned_cols=193 Identities=16% Similarity=0.169 Sum_probs=129.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccc-cC-CCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMI-AL-PPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~-~~-~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
++|+|+|.+||||||+++.|++.|... .. .......+ .|..+. .. ...+..++++......-
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP---~~~~~g---~~----------ir~~l~~~~~~~~~~~~ 64 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREP---GGTSFN---EL----------VRGLLLSLKNLDKISEL 64 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCC---CCCHHH---HH----------HHHHHcCCcCCCHHHHH
Confidence 589999999999999999999998754 21 11000000 111111 11 11222222222344555
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChH
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVS 227 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e 227 (395)
+.++++|..++.+.+...++.|..||+||+++|+++|+.+. .....+.+..+.... ..+.||++|||++|++
T Consensus 65 llf~a~R~~~~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~------~g~~~~~i~~l~~~~--~~~~PDl~i~Ldv~~e 136 (209)
T PRK13976 65 LLFIAMRREHFVKVILPALLQGKIVICDRFIDSTIAYQGYG------CGVDLSLIRDLNDLV--VDKYPDITFVLDIDIE 136 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCCcCHHHHhcccc------CCCCHHHHHHHHHHh--hCCCCCEEEEEeCCHH
Confidence 67888999888777888899999999999999999997432 223344444444332 2467999999999999
Q ss_pred HHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCC-CCC---hhHHHHHHHHhh
Q psy6807 228 KVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSD-GGD---PEVVVEDIERID 295 (395)
Q Consensus 228 ~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~-~~~---~e~V~edIe~l~ 295 (395)
++++|+++|+ +|. .+.+|++++.+.|.+.+.. ....++++|.+. .++ +|+|.++|..+.
T Consensus 137 ~a~~Ri~~~~--~e~----~~~~~l~~v~~~Y~~l~~~---~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i 199 (209)
T PRK13976 137 LSLSRADKNG--YEF----MDLEFYDKVRKGFREIVIK---NPHRCHVITCIDAKDNIEDINSVHLEIVKLL 199 (209)
T ss_pred HHHHHhcccc--hhc----ccHHHHHHHHHHHHHHHHh---CCCCeEEEECCCCccCcCCHHHHHHHHHHHH
Confidence 9999997554 443 3589999999999997643 122467778543 345 999999998754
No 11
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.85 E-value=3.1e-20 Score=172.43 Aligned_cols=198 Identities=21% Similarity=0.264 Sum_probs=138.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCC-CCcccHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDP-KHFHTIAF 146 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp-~~~~~~~~ 146 (395)
++++|+|+|..||||||+++.|++.|...++....+..+ .|..+ ... .+ ....++ ........
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP---~~~~i---ge~-----iR-----~~ll~~~~~~~~~~e 65 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREP---GGTPI---GEK-----IR-----ELLLNGEEKLSPKAE 65 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC---CCChH---HHH-----HH-----HHHcCCccCCCHHHH
Confidence 589999999999999999999999998776522111110 11111 011 11 111121 22235566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
-+.|+++|..+..+.+...+..|..||+||+.+|.++|+..- .....+....+.... ...+.||++||||+||
T Consensus 66 ~lLfaadR~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~------~~~~~~~~~~l~~~~-~~~~~PD~ti~Ldv~~ 138 (208)
T COG0125 66 ALLFAADRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGG------RGLDLDWVLALNEFA-PGGLKPDLTLYLDVPP 138 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhc------cCCCHHHHHHHHHhc-cCCCCCCEEEEEeCCH
Confidence 677888999988888889999999999999999999998522 222333333333322 2345899999999999
Q ss_pred HHHHHHHhhcCCc---cccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhhc
Q psy6807 227 SKVKENVKKRNNP---WEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFD 297 (395)
Q Consensus 227 e~~~eRI~~Rgr~---~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f~ 297 (395)
+++++|+.+|+.. .|. ...+|++++.+.|.+.... ....++++| +.+++|+|.++|..+...
T Consensus 139 e~al~R~~~r~~~~~r~E~----~~~~f~~kvr~~Y~~la~~---~~~r~~vId--a~~~~e~v~~~i~~~l~~ 203 (208)
T COG0125 139 EVALERIRKRGELRDRFEK----EDDEFLEKVREGYLELAAK---FPERIIVID--ASRPLEEVHEEILKILKE 203 (208)
T ss_pred HHHHHHHHhcCCccchhhh----HHHHHHHHHHHHHHHHHhh---CCCeEEEEE--CCCCHHHHHHHHHHHHHH
Confidence 9999999999743 443 2346899999999876543 123699999 777899999999886654
No 12
>PRK13973 thymidylate kinase; Provisional
Probab=99.84 E-value=8.9e-20 Score=170.23 Aligned_cols=198 Identities=16% Similarity=0.110 Sum_probs=129.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCC-----CCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALP-----PANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFH 142 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~-----e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~ 142 (395)
++++|+|+|++||||||+++.|++.|....+. +|+.. + .|..++ ...... .+....
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~-~---~g~~ir------------~~l~~~---~~~~~~ 62 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGS-P---GAEAIR------------HVLLSG---AAELYG 62 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCC-c---hHHHHH------------HHHcCC---CccCCC
Confidence 47899999999999999999999999433222 22210 0 111111 110110 011112
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEE
Q psy6807 143 TIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYL 222 (395)
Q Consensus 143 ~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyL 222 (395)
.....+.+.+.|..+..+.+...+..|..||+||+++|+++|+.+. +.+... +...........+.||++|||
T Consensus 63 ~~~~~ll~~a~r~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~---~~~~~~----~~~~l~~~~~~~~~PD~vi~L 135 (213)
T PRK13973 63 PRMEALLFAAARDDHVEEVIRPALARGKIVLCDRFIDSTRAYQGVT---GNVDPA----LLAALERVAINGVMPDLTLIL 135 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEcchhhhHHHHcccc---cCCCHH----HHHHHHHHHhCCCCCCEEEEE
Confidence 3344466777888888777888889999999999999999997643 122211 112222222344689999999
Q ss_pred ECChHHHHHHHhhcCCccccCCCC-CcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhh
Q psy6807 223 DIPVSKVKENVKKRNNPWEVNSPI-FNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDF 296 (395)
Q Consensus 223 d~p~e~~~eRI~~Rgr~~E~~~~~-v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f 296 (395)
|+|++++.+|+.+|+...+..... -+.+|++.+...|.+.... ....++++| +.+++|+|.++|..+.-
T Consensus 136 dv~~e~~~~Rl~~R~~~~~~~~~e~~~~~~~~~~~~~y~~l~~~---~~~~~~~Id--a~~~~e~V~~~I~~~i~ 205 (213)
T PRK13973 136 DIPAEVGLERAAKRRGSDTPDRFEKEDLAFHEKRREAFLQIAAQ---EPERCVVID--ATASPEAVAAEIWAAVD 205 (213)
T ss_pred eCCHHHHHHHHHhccCCCccCchhhchHHHHHHHHHHHHHHHHh---CCCcEEEEc--CCCCHHHHHHHHHHHHH
Confidence 999999999999997432110000 1357888888888875421 123578888 78999999999988543
No 13
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.82 E-value=4e-19 Score=161.62 Aligned_cols=195 Identities=17% Similarity=0.159 Sum_probs=126.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCC--CCcccHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDP--KHFHTIAFQ 147 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp--~~~~~~~~q 147 (395)
++|+|+|++||||||+++.|++.+............+ .+.. ..+. ...++.++ .........
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~---~~~~---~~~~----------~~~~~~~~~~~~~~~~~~~ 64 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP---GGTP---IGEA----------IRELLLDPEDEKMDPRAEL 64 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC---CCCc---hHHH----------HHHHHhccCccCCCHHHHH
Confidence 5899999999999999999999995433211111110 0000 0000 12223322 111233344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChH
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVS 227 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e 227 (395)
+.+...|..+..+.+...+..|..||+||+++|+.+|+.+... +... .+..+ .......+.|+++|||++|++
T Consensus 65 ~~~~~~r~~~~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~---~~~~---~~~~l-~~~~~~~~~~~~~i~l~~~~~ 137 (200)
T cd01672 65 LLFAADRAQHVEEVIKPALARGKIVLSDRFVDSSLAYQGAGRG---LGEA---LIEAL-NDLATGGLKPDLTILLDIDPE 137 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEECCCcchHHHhCccccC---CCHH---HHHHH-HHHHhCCCCCCEEEEEeCCHH
Confidence 5556677777666666667889999999999999999754321 1122 22222 222334568999999999999
Q ss_pred HHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 228 KVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 228 ~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++.+|+.+|++..+. ...+.+|++.+...|.+..... ..+++++| +.+++|++.++|.+.
T Consensus 138 ~~~~R~~~R~~~~~~--~~~~~~~~~~~~~~y~~~~~~~---~~~~~~id--~~~~~e~i~~~i~~~ 197 (200)
T cd01672 138 VGLARIEARGRDDRD--EQEGLEFHERVREGYLELAAQE---PERIIVID--ASQPLEEVLAEILKA 197 (200)
T ss_pred HHHHHHHhcCCcchh--hhhhHHHHHHHHHHHHHHHHhC---CCeEEEEe--CCCCHHHHHHHHHHH
Confidence 999999999864332 0145789999999998755421 34688899 667899999998764
No 14
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.82 E-value=6.1e-19 Score=161.28 Aligned_cols=192 Identities=21% Similarity=0.196 Sum_probs=122.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQI 148 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql 148 (395)
+++|+|+|++||||||+++.|++.++...........+ .+..+. .. .+.+.. ...+........++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~---~~~~~~---~~-----i~~~~~---~~~~~~~~~~~~~~ 68 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREP---GGTPIG---EK-----IRELLL---NENDEPLTDKAEAL 68 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC---CCChHH---HH-----HHHHHc---CCCccCCCHHHHHH
Confidence 68999999999999999999999997543210000000 000000 00 111110 11121112223345
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHH
Q psy6807 149 RMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSK 228 (395)
Q Consensus 149 ~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~ 228 (395)
.+...|.....+.+...+..|..||+||+++|+++|.... +....+.+..+...... . +||++|||++|+++
T Consensus 69 l~~~~r~~~~~~~i~~~l~~~~~VI~DR~~~s~~ay~~~~------~~~~~~~~~~l~~~~~~-~-~~d~~i~l~~~~~~ 140 (195)
T TIGR00041 69 LFAADRHEHLEDKIKPALAEGKLVISDRYVFSSIAYQGGA------RGIDEDLVLELNEDALG-D-MPDLTIYLDIDPEV 140 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEECCcccHHHHHcccc------CCCCHHHHHHHHHHhhC-C-CCCEEEEEeCCHHH
Confidence 5666777666666777788899999999999999986422 22223344443332211 1 59999999999999
Q ss_pred HHHHHhhcCCc-cccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHH
Q psy6807 229 VKENVKKRNNP-WEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDI 291 (395)
Q Consensus 229 ~~eRI~~Rgr~-~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edI 291 (395)
+.+|+..|++. .+.. .+.+|++.+.+.|.+.+.. ...++++| +.+++|+|.++|
T Consensus 141 ~~~R~~~r~~~~~~~~---~~~~~~~~~~~~y~~~~~~----~~~~~~id--~~~~~e~v~~~i 195 (195)
T TIGR00041 141 ALERLRKRGELDREEF---EKLDFFEKVRQRYLELADK----EKSIHVID--ATNSVEEVEQDI 195 (195)
T ss_pred HHHHHHhcCCcchHHH---HHHHHHHHHHHHHHHHHcC----CCcEEEEe--CCCCHHHHHhhC
Confidence 99999999863 1111 3478999999999987643 34688889 778999998764
No 15
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.81 E-value=2.9e-19 Score=162.59 Aligned_cols=185 Identities=21% Similarity=0.240 Sum_probs=124.9
Q ss_pred EEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHHHHHH
Q psy6807 74 VEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIRMLQL 153 (395)
Q Consensus 74 i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~~~~~ 153 (395)
|+|++||||||+++.|++.|....+.. ....+ ..+.... .. ...+.....+.+.....+.+...
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~-~~~~~--~~~~~~g---~~----------ir~~l~~~~~~~~~~~~~l~~a~ 64 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKV-IITFP--PGSTPIG---EL----------IRELLRSESELSPEAEALLFAAD 64 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEE-EEEES--STSSHHH---HH----------HHHHHHTSSTCGHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcc-cccCC--CCCChHH---HH----------HHHHHhcccCCCHHHHHHHHHHH
Confidence 799999999999999999998766421 00000 0111111 00 11122222233455667778888
Q ss_pred HHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHHHHHH
Q psy6807 154 RFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENV 233 (395)
Q Consensus 154 R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~~eRI 233 (395)
|..+..+.+...+..|..||+||+++|.++|+.+. +.+. .+....+....... +||++|||++||+++.+|+
T Consensus 65 r~~~~~~~I~~~l~~g~~VI~DRy~~S~lay~~~~---~~~~---~~~~~~~~~~~~~~--~PDl~~~Ldv~pe~~~~R~ 136 (186)
T PF02223_consen 65 RAWHLARVIRPALKRGKIVICDRYIYSTLAYQGAK---GELD---IDWIWRLNKDIFLP--KPDLTFFLDVDPEEALKRI 136 (186)
T ss_dssp HHHHHHHTHHHHHHTTSEEEEESEHHHHHHHHTTT---TSST---HHHHHHHHHHHHTT--E-SEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEechhHHHHHhCccc---cCCc---chhhhHHHHHhcCC--CCCEEEEEecCHHHHHHHH
Confidence 87777777888889999999999999999998652 2122 23333333332211 8999999999999999999
Q ss_pred hhcCC-ccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHH
Q psy6807 234 KKRNN-PWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDI 291 (395)
Q Consensus 234 ~~Rgr-~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edI 291 (395)
..|+. ..+. .-..+|++.+...|.+.+. ....++++| +..++|+|.++|
T Consensus 137 ~~r~~~~~~~---~~~~~~~~~~~~~y~~l~~----~~~~~~iid--~~~~~e~v~~~I 186 (186)
T PF02223_consen 137 AKRGEKDDEE---EEDLEYLRRVREAYLELAK----DPNNWVIID--ASRSIEEVHEQI 186 (186)
T ss_dssp HHTSSTTTTT---THHHHHHHHHHHHHHHHHH----TTTTEEEEE--TTS-HHHHHHHH
T ss_pred HcCCccchHH---HHHHHHHHHHHHHHHHHHc----CCCCEEEEE--CCCCHHHHHhhC
Confidence 99987 1111 1257899999999988653 246799999 788899999987
No 16
>PRK13975 thymidylate kinase; Provisional
Probab=99.80 E-value=3.3e-18 Score=156.56 Aligned_cols=188 Identities=20% Similarity=0.222 Sum_probs=123.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQI 148 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql 148 (395)
+++|+|+|++||||||+++.|+++|+.....++. +.. .|..+ ..++... .......++
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~-~~~---~g~~i-----------------r~~~~~~-~~~~~~~~~ 59 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPT-DGK---IGKLI-----------------REILSGS-KCDKETLAL 59 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCC-CCh---HHHHH-----------------HHHHccC-CCCHHHHHH
Confidence 4799999999999999999999999864432321 110 01111 1122211 122445677
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHH
Q psy6807 149 RMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSK 228 (395)
Q Consensus 149 ~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~ 228 (395)
.+...|+.+. ..+...+.. +.||+||+++|+++|+.+. | +... ....+ ....+.|+++|||++|+++
T Consensus 60 ~f~~~r~~~~-~~i~~~~~~-~~vi~DRy~~S~~a~~~~~---g-~~~~---~~~~~----~~~~~~pd~vi~L~~~~e~ 126 (196)
T PRK13975 60 LFAADRVEHV-KEIEEDLKK-RDVVCDRYVYSSIAYQSVQ---G-IDED---FIYSI----NRYAKKPDLVFLLDVDIEE 126 (196)
T ss_pred HHHHHHHHHH-HHHHHHHcC-CEEEEECchhHHHHHhccc---C-CCHH---HHHHH----HhCCCCCCEEEEEcCCHHH
Confidence 7778887664 345554444 7899999999999998541 2 2211 11111 1223579999999999999
Q ss_pred HHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccc-cCCCCcEEEEeCCCCCChhHHHHHHHHhhhc
Q psy6807 229 VKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQ-ISDSSELLVYDWSDGGDPEVVVEDIERIDFD 297 (395)
Q Consensus 229 ~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~-~~~~~~vli~D~t~~~~~e~V~edIe~l~f~ 297 (395)
+.+|+.+|+++.-. ..+|++++.+.|.++.... ......++++|+ +..++++|.++|...--.
T Consensus 127 ~~~Rl~~r~~~~~~-----~~~~~~~~~~~y~~~~~~~~~~~~~~~~~Id~-~~~~~eev~~~I~~~i~~ 190 (196)
T PRK13975 127 ALKRMETRDKEIFE-----KKEFLKKVQEKYLELANNEKFMPKYGFIVIDT-TNKSIEEVFNEILNKIKD 190 (196)
T ss_pred HHHHHhccCccccc-----hHHHHHHHHHHHHHHHhhcccCCcCCEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 99999999854322 3688899999998876421 111235788882 357999999999775443
No 17
>PRK13974 thymidylate kinase; Provisional
Probab=99.80 E-value=9.9e-18 Score=156.34 Aligned_cols=201 Identities=18% Similarity=0.164 Sum_probs=130.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc--CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR--GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIA 145 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~--~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~ 145 (395)
.+.+|+|+|++||||||+++.|++.|................ .+.. +... .+.+....... .......
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~---~g~~-----ir~~l~~~~~~--~~~~~~~ 71 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTL---LGKS-----LRELLLDTSKD--NSPSPLA 71 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCc---hHHH-----HHHHHcCCCcc--cCCCHHH
Confidence 368999999999999999999999986443210000000000 1111 1011 11111111111 0123455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECC
Q psy6807 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIP 225 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p 225 (395)
..+.+.++|+.++.+.+.+.+..|..||.||+++|.++|+.. -+....+.+..+..... ....|+++|||++|
T Consensus 72 ~~llf~adr~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~------~r~~~~~~~~~l~~~~~-~~~~pd~~i~ld~~ 144 (212)
T PRK13974 72 ELLLYAADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGY------GRGLDLELIKNLESIAT-QGLSPDLTFFLEIS 144 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEcCchhhHHHHccc------cCCCCHHHHHHHHHHHh-CCCCCCEEEEEeCC
Confidence 667788899988877778888999999999999999998642 22223333444433222 23479999999999
Q ss_pred hHHHHHHHhhcCCc-cccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhh
Q psy6807 226 VSKVKENVKKRNNP-WEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDF 296 (395)
Q Consensus 226 ~e~~~eRI~~Rgr~-~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f 296 (395)
++++.+|+..|+.. .|. -..+|++.+...|..+.. ...++++| +.+++++|.++|..+--
T Consensus 145 ~~~~~~R~~~R~dD~~e~----~~~~y~~~v~~~y~~y~~-----~~~~~~Id--a~~~~eeV~~~I~~~l~ 205 (212)
T PRK13974 145 VEESIRRRKNRKPDRIEA----EGIEFLERVAEGFALIAE-----ERNWKVIS--ADQSIETISNEIKETLL 205 (212)
T ss_pred HHHHHHHHHhcccCchhh----hhHHHHHHHHHHHHHHHh-----cCCEEEEe--CCCCHHHHHHHHHHHHH
Confidence 99999999988643 332 246899999999985432 24688889 67899999999987543
No 18
>PHA03132 thymidine kinase; Provisional
Probab=99.75 E-value=9.2e-18 Score=175.28 Aligned_cols=178 Identities=15% Similarity=0.183 Sum_probs=113.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcc--ccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhc-CCCCCccc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDM--IALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFC-KDPKHFHT 143 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~--~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~-~dp~~~~~ 143 (395)
++++|+|+|++||||||+++.|++.+|. ..++|+.- .+.. ++..+..+...+ ...... .++. ...
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~--~W~~vy~n~l~~I~~~~--------~r~~~g~~s~~-~el 324 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMR--YWTEVYSNCLKEIYKLV--------KPGKHGKTSTS-AKL 324 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCC--chhhccccHHHHHHHHH--------hcccccCCCHH-HHH
Confidence 3789999999999999999999999833 33455521 1111 111111111100 000000 0000 112
Q ss_pred HHHHHHHH------HHHHHHHH---HHHHHHHhcCCeEEEeccCcchHH-HHHHHHhcCCCChhHHHHHHHHHHHhCCCC
Q psy6807 144 IAFQIRML------QLRFSVYV---DALAHMLSTGQGAIVQRCPFSDFI-FIEAMDKCGYITKRHKDIYYEITRFTLPPL 213 (395)
Q Consensus 144 ~~~ql~~~------~~R~~q~~---~al~~~l~tG~~VIlDRs~~Sd~v-f~~a~~~~g~i~~~~~~~y~~~~~~~~~~l 213 (395)
+..|+.|+ ++|..++. ..+...+..|..||+||+++|+++ |+.+.++.|.+... .+.++..... .
T Consensus 325 la~Ql~FA~Pfl~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~---e~~~lL~~~~--~ 399 (580)
T PHA03132 325 LACQMKFATPFRALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFS---HFIQLLSTFR--A 399 (580)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHH---HHHHHHHHhc--c
Confidence 44454443 45655543 222235578999999999999985 88887877876533 2333333221 1
Q ss_pred CCCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcc
Q psy6807 214 FKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYL 264 (395)
Q Consensus 214 ~~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l 264 (395)
..||++|||+++++++++||++|++..|.. ++.+|++++.+.|...+.
T Consensus 400 ~~PDLiIyLdv~pe~alkRIkkRgR~~E~~---IdleYL~rLre~Y~~l~~ 447 (580)
T PHA03132 400 HEGDVIVLLKLNSEENLRRVKKRGRKEEKG---INLTYLKELNWAYHAVYC 447 (580)
T ss_pred cCCCEEEEEeCCHHHHHHHHHhcCchhhhc---CCHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999988874 689999999998887653
No 19
>KOG3327|consensus
Probab=99.60 E-value=1.1e-14 Score=130.53 Aligned_cols=188 Identities=20% Similarity=0.262 Sum_probs=128.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIA 145 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~ 145 (395)
.++.+|+++|.++|||||++..|.+.+.-...+. ... .+.+ .+.....++. +..+.+ +-| .-.
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~~~-~l~-~FP~Rst~iGk~i~~---------YL~k~~-dl~----d~~ 66 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLIPGLDPA-ELL-RFPERSTSIGKLIDG---------YLRKKS-DLP----DHT 66 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHHhccChH-Hhh-hcchhcccccHHHHH---------HHHhcc-CCc----HHH
Confidence 3578999999999999999999999885443221 111 1222 2222222222 223333 222 346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECC
Q psy6807 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIP 225 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p 225 (395)
..+.|.++|+.+. ..+...++.|..+|+|||.||..+|+.|- |. + .+|-..--..+++||+|+||++|
T Consensus 67 iHLlFSAnRwe~~-~~i~e~l~kg~~~ivDRY~~SGvAyS~AK---gl-~-------~dWc~~pd~gL~KPDlvlfL~v~ 134 (208)
T KOG3327|consen 67 IHLLFSANRWEHV-SLIKEKLAKGTTLIVDRYSFSGVAYSAAK---GL-D-------LDWCKQPDVGLPKPDLVLFLDVS 134 (208)
T ss_pred HHHHhccchhhHH-HHHHHHHhcCCeEEEecceecchhhhhhc---CC-C-------cchhhCCccCCCCCCeEEEEeCC
Confidence 6677888998774 45677789999999999999999998763 31 1 12223333567899999999999
Q ss_pred hHHHHHHHhhcCC-ccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 226 VSKVKENVKKRNN-PWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 226 ~e~~~eRI~~Rgr-~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
|++ ..|...+|. .+|. .++++.+...|++... .+...+.++| +..++|.|.++|..+
T Consensus 135 p~~-~a~rggfG~Erye~------v~fqekv~~~~q~l~r---~e~~~~~~vD--As~sve~V~~~V~~i 192 (208)
T KOG3327|consen 135 PED-AARRGGFGEERYET------VAFQEKVLVFFQKLLR---KEDLNWHVVD--ASKSVEKVHQQVRSL 192 (208)
T ss_pred HHH-HHHhcCcchhHHHH------HHHHHHHHHHHHHHHh---ccCCCeEEEe--cCccHHHHHHHHHHH
Confidence 999 555555663 3443 6788888888877441 2467889999 669999999999543
No 20
>PHA03136 thymidine kinase; Provisional
Probab=99.54 E-value=1e-13 Score=137.71 Aligned_cols=180 Identities=16% Similarity=0.204 Sum_probs=111.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccc----cCCCCcccccccc-CC-Cc-cccchhhhhhhhhhhhhhhhhcC-CCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMI----ALPPANMDMFYKR-GD-FD-WRSLDAEWSNENLKSYDEKTFCK-DPK 139 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~----~~~e~~~d~~~~~-~g-~d-~~~l~~~l~p~~~~~~~~~~f~~-dp~ 139 (395)
+...|.|+|+.|+||||+++.|++.-+.. +++||. .++.+ .| .+ +..+.. ....+..++.-. +.+
T Consensus 35 ~~~rvyieG~~gvGKTT~~~~l~~~~~~~~~vl~v~EPm--~yW~~v~~~~d~i~~Iy~-----~q~r~~~G~~s~~~a~ 107 (378)
T PHA03136 35 RLVLLYLDGPFGTGKTTTAKLLMEMPDTLAARLYLAEPM--AAWRNHFGGADMIKEINE-----IQELKARGDIACRDAK 107 (378)
T ss_pred eeEEEEEECCCcCCHHHHHHHHHhccccCCCeeeecCch--HHHHhhcCcchHHHHHHH-----HHHHHhcCCcchhhhH
Confidence 35689999999999999999999842333 667762 23333 32 11 221111 001111111110 000
Q ss_pred CcccHH-HHHHHHHHHHHHHHHHHHHHHh------------cCCeEEEeccCcch-HHHHHHHHhcCCCChhHHHHHHHH
Q psy6807 140 HFHTIA-FQIRMLQLRFSVYVDALAHMLS------------TGQGAIVQRCPFSD-FIFIEAMDKCGYITKRHKDIYYEI 205 (395)
Q Consensus 140 ~~~~~~-~ql~~~~~R~~q~~~al~~~l~------------tG~~VIlDRs~~Sd-~vf~~a~~~~g~i~~~~~~~y~~~ 205 (395)
.-... .|+.|..-.. .....+...+. ....+|+||++.|. .+|..+.+..|.++..++..+.
T Consensus 108 -~~~~~~~Q~~fa~P~~-~~~~~~~~~~g~~~~~~~~~~~~pd~~~i~DRhpisA~lcFp~~~~~lG~lsy~~l~~ll-- 183 (378)
T PHA03136 108 -AIAAAELQLQFAAPLR-IFHHVASNLFGSERCYSAAARGPDDILFIIDRHPLAACLCFPAAQFLSGALEFGDLIALI-- 183 (378)
T ss_pred -HHHHHHHHHHhccHHH-HHHHHHHHhhccccccCCCCCCCCCeEEEeecCcchHhhcCCHHHHhcCCCCHHHHHHHH--
Confidence 00111 5655443211 11111211111 11356899999987 4799999999999854433322
Q ss_pred HHHhCCCCCCCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcc
Q psy6807 206 TRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYL 264 (395)
Q Consensus 206 ~~~~~~~l~~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l 264 (395)
.....++.||++|||+++++++++||++|||+.| . ++.+|++.+.+.|..++.
T Consensus 184 --~~~~~~p~pD~IIyL~l~~e~~~~RI~kRgR~~E-~---I~~~YL~~L~~~Y~~~~n 236 (378)
T PHA03136 184 --SGIPDEPHGGNIVIMDLDECEHAERIIARGRPGE-A---IDVRFLCALHNIYICFMN 236 (378)
T ss_pred --hhCcCCCCCCEEEEEeCCHHHHHHHHHHcCCCcc-C---CCHHHHHHHHHHHHHHHH
Confidence 1245677899999999999999999999999999 5 899999999999998764
No 21
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.53 E-value=1.6e-13 Score=124.20 Aligned_cols=177 Identities=17% Similarity=0.253 Sum_probs=97.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHH
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIR 149 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~ 149 (395)
+|+|.|+|||||||+|+.||+++|..++... +.+.. .. .... + ... ...+..... ....++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~---d~lr~~~~-~~~~----~-~~~-----~~~~~~~g~---~~~~~~~ 63 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAG---DLLRAEIK-SGSE----N-GEL-----IESMIKNGK---IVPSEVT 63 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECC---hHHHHHHh-cCCh----H-HHH-----HHHHHHCCC---cCCHHHH
Confidence 5899999999999999999999999888432 21111 00 0000 0 000 011111100 0000110
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHH
Q psy6807 150 MLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKV 229 (395)
Q Consensus 150 ~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~ 229 (395)
. .+ ..+++.. . .+.++|+|.+|.+- .....+.++. .....|+++|||++|++++
T Consensus 64 --~-~l--l~~~~~~-~-~~~~~vlDg~p~~~---------------~q~~~~~~~~----~~~~~~d~~i~l~~~~~~~ 117 (183)
T TIGR01359 64 --V-KL--LKNAIQA-D-GSKKFLIDGFPRNE---------------ENLEAWEKLM----DNKVNFKFVLFFDCPEEVM 117 (183)
T ss_pred --H-HH--HHHHHhc-c-CCCcEEEeCCCCCH---------------HHHHHHHHHH----hcCCCCCEEEEEECCHHHH
Confidence 0 00 0112211 1 27789999887442 1112222222 1223689999999999999
Q ss_pred HHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhccccc---CCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 230 KENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQI---SDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 230 ~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~---~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++|+.+|+...... .-+.+.++.....|++...+.. .+...++++| +.+++++|.++|..+
T Consensus 118 ~~Rl~~R~~~~~r~--dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id--~~~~~~~v~~~i~~~ 181 (183)
T TIGR01359 118 IKRLLKRGQSSGRV--DDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEIN--AEGSVEEVFEDVEKI 181 (183)
T ss_pred HHHHhcCCccCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE--CCCCHHHHHHHHHHH
Confidence 99999997531110 0134555555556665433222 2223578899 779999999999764
No 22
>PRK14532 adenylate kinase; Provisional
Probab=99.53 E-value=1.5e-13 Score=125.27 Aligned_cols=175 Identities=18% Similarity=0.236 Sum_probs=97.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc---CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR---GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~---~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
.|+|.|+|||||||+|+.||+++|..++.. ++.+.. .+.... .. ....+.... ...-..-
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~---~d~lr~~~~~~~~~~---~~----------~~~~~~~g~-~~~~~~~ 64 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST---GDMLRAAIASGSELG---QR----------VKGIMDRGE-LVSDEIV 64 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC---cHHHHHHHHcCCHHH---HH----------HHHHHHCCC-ccCHHHH
Confidence 589999999999999999999999998843 222211 010000 00 011111110 0000010
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChH
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVS 227 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e 227 (395)
..++. +.+. ....|+++|+|.+|-+- ...+.+.++.. ..-..|+++|+|++|++
T Consensus 65 ~~~~~-------~~~~-~~~~~~g~vldg~pr~~---------------~q~~~~~~~l~---~~g~~pd~vi~L~v~~~ 118 (188)
T PRK14532 65 IALIE-------ERLP-EAEAAGGAIFDGFPRTV---------------AQAEALDKMLA---SRGQKIDVVIRLKVDDE 118 (188)
T ss_pred HHHHH-------HHHh-CcCccCcEEEeCCCCCH---------------HHHHHHHHHHH---hcCCCCCEEEEEECCHH
Confidence 11111 1221 23468899999877321 11112222221 11136899999999999
Q ss_pred HHHHHHhhcCCc---cccCCCCCcHHHHHHHHHHHHhhc--ccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 228 KVKENVKKRNNP---WEVNSPIFNDKYLHEIEDLYKNNY--LPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 228 ~~~eRI~~Rgr~---~E~~~~~v~~~yl~~l~~~Yk~~~--l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++.+|+.+|... .+. -...+.+++...|++.. .+...+...++.+| +.+++++|.++|...
T Consensus 119 ~~~~Rl~~R~~~~~r~dd----~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id--~~~~~eev~~~I~~~ 184 (188)
T PRK14532 119 ALIERIVKRFEEQGRPDD----NPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVD--GMGSIEAVAASIDAA 184 (188)
T ss_pred HHHHHHHcCcCcCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE--CCCCHHHHHHHHHHH
Confidence 999999988521 111 13456677766665532 11112233577788 778999999999763
No 23
>PRK03839 putative kinase; Provisional
Probab=99.51 E-value=4.7e-13 Score=121.19 Aligned_cols=169 Identities=20% Similarity=0.253 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIR 149 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~ 149 (395)
+.|+|.|+|||||||+++.||++++.+++ ++|..+...+ + ...+.+.. ...
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~i---d~d~~~~~~~--~-----------------~~~~~~~~-------~~~ 51 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYV---DLTEFALKKG--I-----------------GEEKDDEM-------EID 51 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEE---ehhhhhhhcC--C-----------------cccCChhh-------hcC
Confidence 36999999999999999999999999887 3343221100 0 00000000 000
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHH
Q psy6807 150 MLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKV 229 (395)
Q Consensus 150 ~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~ 229 (395)
+....+.+...+ .+.++|+|... ..+..++.+|||++|++++
T Consensus 52 -----~~~l~~~~~~~~-~~~~vIidG~~--------------------------------~~l~~~~~vi~L~~~~~~~ 93 (180)
T PRK03839 52 -----FDKLAYFIEEEF-KEKNVVLDGHL--------------------------------SHLLPVDYVIVLRAHPKII 93 (180)
T ss_pred -----HHHHHHHHHHhc-cCCCEEEEecc--------------------------------ccccCCCEEEEEECCHHHH
Confidence 011111222222 35668888521 1123589999999999999
Q ss_pred HHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhhccccccccccccc
Q psy6807 230 KENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFDHYDHFSNKMREW 309 (395)
Q Consensus 230 ~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f~~~~~~~~~~~~w 309 (395)
.+|+..|+...+. ........+.+.+.... ..+...++++| ++..++++|+++|...--. .........||
T Consensus 94 ~~Rl~~R~~~~~~----~~~~~~~~~~~~~~~~~---~~~r~~~~~Id-~~~~s~eev~~~I~~~l~~-~~~~~~~~~~~ 164 (180)
T PRK03839 94 KERLKERGYSKKK----ILENVEAELVDVCLCEA---LEEKEKVIEVD-TTGKTPEEVVEEILELIKS-GKKRKVGIVDW 164 (180)
T ss_pred HHHHHHcCCCHHH----HHHHHHHHHHHHHHHHH---HHhcCCEEEEE-CCCCCHHHHHHHHHHHHhc-CCCCCCCeecc
Confidence 9999988742111 11111122222211000 11234678899 2347999999999775443 23345558999
Q ss_pred cccch
Q psy6807 310 RQLTT 314 (395)
Q Consensus 310 ~~~~~ 314 (395)
...-+
T Consensus 165 ~~~~~ 169 (180)
T PRK03839 165 SEVYD 169 (180)
T ss_pred hhhcc
Confidence 86544
No 24
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.51 E-value=1.1e-13 Score=122.00 Aligned_cols=163 Identities=22% Similarity=0.259 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQI 148 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql 148 (395)
++|+|.|+|||||||+|+.||+++|++++....+-+.+.. .|.++.++... .-+||+ +
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~-------------AE~~p~--------i 59 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRY-------------AEEDPE--------I 59 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHH-------------HhcCch--------h
Confidence 5799999999999999999999999999976554444444 56555533221 123443 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHH
Q psy6807 149 RMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSK 228 (395)
Q Consensus 149 ~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~ 228 (395)
-... +.-...+....+||++..+ +||+.+ ..+|+.|||.+|.++
T Consensus 60 D~~i-------D~rq~e~a~~~nvVlegrL------------A~Wi~k-----------------~~adlkI~L~Apl~v 103 (179)
T COG1102 60 DKEI-------DRRQKELAKEGNVVLEGRL------------AGWIVR-----------------EYADLKIWLKAPLEV 103 (179)
T ss_pred hHHH-------HHHHHHHHHcCCeEEhhhh------------HHHHhc-----------------cccceEEEEeCcHHH
Confidence 1122 2222223345678888432 233221 257999999999999
Q ss_pred HHHHHhhcC-CccccCCCCCcHHHHH--HHHHHHHhhcccccCCCC-cEEEEeCCCCCChhHHHHHHHH
Q psy6807 229 VKENVKKRN-NPWEVNSPIFNDKYLH--EIEDLYKNNYLPQISDSS-ELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 229 ~~eRI~~Rg-r~~E~~~~~v~~~yl~--~l~~~Yk~~~l~~~~~~~-~vli~D~t~~~~~e~V~edIe~ 293 (395)
..+||..|. .+.+.. ...-... .=.+.|++.|--++...+ --+++| |..-+++.|..-|..
T Consensus 104 Ra~Ria~REgi~~~~a---~~~~~~RE~se~kRY~~~YgIDidDlSiyDLVin-Ts~~~~~~v~~il~~ 168 (179)
T COG1102 104 RAERIAKREGIDVDEA---LAETVEREESEKKRYKKIYGIDIDDLSIYDLVIN-TSKWDPEEVFLILLD 168 (179)
T ss_pred HHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHhCCCCccceeeEEEEe-cccCCHHHHHHHHHH
Confidence 999999995 333321 1111111 113368888776665432 124556 445566766655543
No 25
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.50 E-value=5.3e-13 Score=120.81 Aligned_cols=178 Identities=17% Similarity=0.232 Sum_probs=99.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc--CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR--GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIA 145 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~--~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~ 145 (395)
+.++|+|+|++||||||+++.|++++|..++... ..+.. .+.. +.. + ....++.+.. ...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g---~~~~~~~~~~~---------~~~-~--~~~~~~~~~~-~~~-- 63 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTG---DLLRAEVASGS---------ERG-K--QLQAIMESGD-LVP-- 63 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHH---HHHHHHHhcCC---------HHH-H--HHHHHHHCCC-CCC--
Confidence 4579999999999999999999999998777432 11111 0000 000 0 0011111111 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECC
Q psy6807 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIP 225 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p 225 (395)
.+.. +....+++...+..|.+||+|+++-+-. ....+ . ..+..|+++|||++|
T Consensus 64 ~~~~-----~~~l~~~~~~~~~~~~~~i~dg~~~~~~------------------q~~~~-~---~~~~~~~~vi~l~~~ 116 (188)
T TIGR01360 64 LDTV-----LDLLKDAMVAALGTSKGFLIDGYPREVK------------------QGEEF-E---RRIGPPTLVLYFDCS 116 (188)
T ss_pred HHHH-----HHHHHHHHHcccCcCCeEEEeCCCCCHH------------------HHHHH-H---HcCCCCCEEEEEECC
Confidence 0110 0112233444467899999998763210 00001 1 223468999999999
Q ss_pred hHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhc--ccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 226 VSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNY--LPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 226 ~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~--l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
++++.+|+.+|+...... ..-...+.+++...|++.. .........++++| +.+++++|.++|..
T Consensus 117 ~~~~~~Rl~~R~~~~~r~-d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id--~~~~~~~v~~~i~~ 183 (188)
T TIGR01360 117 EDTMVKRLLKRAETSGRV-DDNEKTIKKRLETYYKATEPVIAYYETKGKLRKIN--AEGTVDDVFLQVCT 183 (188)
T ss_pred HHHHHHHHHcccccCCCC-CCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEE--CCCCHHHHHHHHHH
Confidence 999999999987421100 0012455566665554321 01112234677888 77999999988865
No 26
>PRK13949 shikimate kinase; Provisional
Probab=99.50 E-value=1.3e-13 Score=124.29 Aligned_cols=72 Identities=10% Similarity=0.186 Sum_probs=47.8
Q ss_pred CCEEEEEECChHHHHHHHhh--cCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 216 PHLVIYLDIPVSKVKENVKK--RNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eRI~~--Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
.+++|||++|++++.+|++. |+||..... -..++++.+.+.|+++.. .+.. ++ +++|++ ..+++++++.|..
T Consensus 94 ~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~--~~~~~~~~i~~l~~~R~~-~Y~~-ad-~~id~~-~~~~~e~~~~I~~ 167 (169)
T PRK13949 94 SGTTVYLKVSPEVLFVRLRLAKQQRPLLKGK--SDEELLDFIIEALEKRAP-FYRQ-AK-IIFNAD-KLEDESQIEQLVQ 167 (169)
T ss_pred CCeEEEEECCHHHHHHHHhcCCCCCCCCCCC--ChHHHHHHHHHHHHHHHH-HHHh-CC-EEEECC-CCCHHHHHHHHHH
Confidence 47899999999999999984 468876431 124555556666665432 2233 66 567843 4588888888753
No 27
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.48 E-value=1.2e-13 Score=123.95 Aligned_cols=161 Identities=22% Similarity=0.301 Sum_probs=97.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
.+.|+++|++||||||+++.||+.|+++|+ ++|..+.+ .|+++.++++..|.+ .| +..
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~---D~D~~Ie~~~g~sI~eIF~~~GE~--------~F----------R~~ 60 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFI---DTDQEIEKRTGMSIAEIFEEEGEE--------GF----------RRL 60 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcc---cchHHHHHHHCcCHHHHHHHHhHH--------HH----------HHH
Confidence 467999999999999999999999999999 66777777 888888777654211 11 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChH
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVS 227 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e 227 (395)
..-...++.+.- ...++||+|+|+.... ... +..-..+|||++|++
T Consensus 61 E~~vl~~l~~~~---~~ViaTGGG~v~~~en---------------------------r~~----l~~~g~vv~L~~~~e 106 (172)
T COG0703 61 ETEVLKELLEED---NAVIATGGGAVLSEEN---------------------------RNL----LKKRGIVVYLDAPFE 106 (172)
T ss_pred HHHHHHHHhhcC---CeEEECCCccccCHHH---------------------------HHH----HHhCCeEEEEeCCHH
Confidence 111111111110 1346788887765211 000 112358999999999
Q ss_pred HHHHHHh-hcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 228 KVKENVK-KRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 228 ~~~eRI~-~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
++++|++ .+.||.-.. -+. .+.+++.|++... .+.+.+++ +++ .....++++++|-.
T Consensus 107 ~l~~Rl~~~~~RPll~~---~~~--~~~l~~L~~~R~~-~Y~e~a~~-~~~--~~~~~~~v~~~i~~ 164 (172)
T COG0703 107 TLYERLQRDRKRPLLQT---EDP--REELEELLEERQP-LYREVADF-IID--TDDRSEEVVEEILE 164 (172)
T ss_pred HHHHHhccccCCCcccC---CCh--HHHHHHHHHHHHH-HHHHhCcE-Eec--CCCCcHHHHHHHHH
Confidence 9999999 556776443 112 2334444444321 22223444 555 33333777777755
No 28
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.46 E-value=6.3e-13 Score=118.53 Aligned_cols=91 Identities=19% Similarity=0.122 Sum_probs=64.0
Q ss_pred CCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHH-HHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 215 KPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIED-LYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 215 ~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~-~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
.+|+||.|+++|+++.+|+++||.+.|+-..++..+.+.-+.. +.+. +..+.++| +.+.++++++++|..
T Consensus 82 ~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~--------~~~v~evd-tt~~s~ee~~~~i~~ 152 (180)
T COG1936 82 DCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVER--------FEAVIEVD-TTNRSPEEVAEEIID 152 (180)
T ss_pred CCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh--------cCceEEEE-CCCCCHHHHHHHHHH
Confidence 3899999999999999999999998887433444454444322 2221 24688999 568899999999988
Q ss_pred hhhccccccccccccccccchh
Q psy6807 294 IDFDHYDHFSNKMREWRQLTTK 315 (395)
Q Consensus 294 l~f~~~~~~~~~~~~w~~~~~~ 315 (395)
+.-.. .....+..||....+.
T Consensus 153 ii~~~-~~~~~g~vd~~~~~~~ 173 (180)
T COG1936 153 IIGGG-RKKRVGVVDWLEELEE 173 (180)
T ss_pred HHccc-ccCCCCCcchhhhhhh
Confidence 76631 1235556777765443
No 29
>KOG3354|consensus
Probab=99.46 E-value=5.5e-12 Score=110.35 Aligned_cols=168 Identities=21% Similarity=0.275 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIR 149 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~ 149 (395)
-+|+|.|.+||||||+++.|+++|+.+|+..++. . .|++......+.-++|. +++.+.-.+
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~-----------H------p~~NveKM~~GipLnD~-DR~pWL~~i- 73 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDL-----------H------PPANVEKMTQGIPLNDD-DRWPWLKKI- 73 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcccccccC-----------C------CHHHHHHHhcCCCCCcc-cccHHHHHH-
Confidence 4899999999999999999999999999855422 1 02222233334444553 344443222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCC-----C-CCCEEEEEE
Q psy6807 150 MLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPL-----F-KPHLVIYLD 223 (395)
Q Consensus 150 ~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l-----~-~PdlvIyLd 223 (395)
...+...+..|++||+-+|. ....|+++.+...... + .--.+|||.
T Consensus 74 ---------~~~~~~~l~~~q~vVlACSa-------------------LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~ 125 (191)
T KOG3354|consen 74 ---------AVELRKALASGQGVVLACSA-------------------LKKKYRDILRHSLKDGKPGKCPESQLHFILLS 125 (191)
T ss_pred ---------HHHHHHHhhcCCeEEEEhHH-------------------HHHHHHHHHHhhcccCCccCCccceEEEeeee
Confidence 22333445689999999764 2356777776543311 1 113689999
Q ss_pred CChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 224 IPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 224 ~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
++.|++.+|+++|...+. +.+. ++..+...-+|.. +..+++.+|..+ .++|+++..|-+..
T Consensus 126 ~s~evi~~Rl~~R~gHFM------p~~l---leSQf~~LE~p~~-~e~div~isv~~-~~~e~iv~tI~k~~ 186 (191)
T KOG3354|consen 126 ASFEVILKRLKKRKGHFM------PADL---LESQFATLEAPDA-DEEDIVTISVKT-YSVEEIVDTIVKMV 186 (191)
T ss_pred ccHHHHHHHHhhcccccC------CHHH---HHHHHHhccCCCC-CccceEEEeecc-CCHHHHHHHHHHHH
Confidence 999999999999987653 3443 3445554444543 345899998433 89999998886643
No 30
>PRK14531 adenylate kinase; Provisional
Probab=99.44 E-value=3.5e-12 Score=116.18 Aligned_cols=174 Identities=15% Similarity=0.228 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc--CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR--GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~--~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
+.|+|+|+|||||||+++.||+++|..++... +.+.. .+.. .+. .........+....+ ..-
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~g---d~lr~~~~~~~--~~~----~~~~~~~~~G~~v~d-------~l~ 66 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTG---DLLRSEVAAGS--ALG----QEAEAVMNRGELVSD-------ALV 66 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecc---cHHHHHHhcCC--HHH----HHHHHHHHcCCCCCH-------HHH
Confidence 46999999999999999999999999988532 21111 0000 000 000000000111111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChH
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVS 227 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e 227 (395)
...+. +.+... .++++|+|.+|-+-. +...+.++... .-..|+.+|+|++|++
T Consensus 67 ~~~~~-------~~l~~~--~~~g~ilDGfpr~~~---------------q~~~~~~~~~~---~~~~~~~vi~l~~~~~ 119 (183)
T PRK14531 67 LAIVE-------SQLKAL--NSGGWLLDGFPRTVA---------------QAEALEPLLEE---LKQPIEAVVLLELDDA 119 (183)
T ss_pred HHHHH-------HHHhhc--cCCcEEEeCCCCCHH---------------HHHHHHHHHHH---cCCCCCeEEEEECCHH
Confidence 11111 122111 467889998875421 11112222221 1124789999999999
Q ss_pred HHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhccccc---CCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 228 KVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQI---SDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 228 ~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~---~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++.+|+..|++..+.. ....+++ +.|++...|-+ .+...++.+| +.+++++|.++|...
T Consensus 120 ~l~~Rl~~R~r~dD~~-----e~i~~Rl-~~y~~~~~pv~~~y~~~~~~~~id--~~~~~~~v~~~i~~~ 181 (183)
T PRK14531 120 VLIERLLARGRADDNE-----AVIRNRL-EVYREKTAPLIDHYRQRGLLQSVE--AQGSIEAITERIEKV 181 (183)
T ss_pred HHHHHhhcCCCCCCCH-----HHHHHHH-HHHHHHHHHHHHHHHhcCCEEEEE--CCCCHHHHHHHHHHH
Confidence 9999999998754321 1122222 22333222211 1224578888 889999999999763
No 31
>PLN02200 adenylate kinase family protein
Probab=99.43 E-value=3.2e-12 Score=121.19 Aligned_cols=174 Identities=18% Similarity=0.298 Sum_probs=98.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc--CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR--GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIA 145 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~--~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~ 145 (395)
.+++|+|.|+|||||||+|+.||+++|+.++... +.+.+ .+.. +... ....+..... ..+-.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~g---dllR~~i~~~s---------~~~~---~i~~~~~~G~-~vp~e 105 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAG---DLLRREIASNS---------EHGA---MILNTIKEGK-IVPSE 105 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEcc---HHHHHHHhccC---------hhHH---HHHHHHHcCC-CCcHH
Confidence 4679999999999999999999999999887432 21111 0000 0000 0001110000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECC
Q psy6807 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIP 225 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p 225 (395)
.-...+ .+.+.. ..++++|+|.++-+. .+...+.+.. . ..||++|+|++|
T Consensus 106 ~~~~~l-------~~~l~~--~~~~~~ILDG~Prt~---------------~q~~~l~~~~-----~-~~pd~vi~Ld~~ 155 (234)
T PLN02200 106 VTVKLI-------QKEMES--SDNNKFLIDGFPRTE---------------ENRIAFERII-----G-AEPNVVLFFDCP 155 (234)
T ss_pred HHHHHH-------HHHHhc--CCCCeEEecCCcccH---------------HHHHHHHHHh-----c-cCCCEEEEEECC
Confidence 101111 112211 135679999876321 1111111111 1 258999999999
Q ss_pred hHHHHHHHhhcCC-ccccCCCCCcHHHHHHHHHHHHhhccccc---CCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 226 VSKVKENVKKRNN-PWEVNSPIFNDKYLHEIEDLYKNNYLPQI---SDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 226 ~e~~~eRI~~Rgr-~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~---~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++++.+|+.+|+. ..+. +.+.++...+.|++...+.. .+...++.+| +.+++++|.++|..+
T Consensus 156 ~e~~~~Rl~~R~~~r~dd-----~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~ID--a~~~~eeV~~~v~~~ 221 (234)
T PLN02200 156 EEEMVKRVLNRNQGRVDD-----NIDTIKKRLKVFNALNLPVIDYYSKKGKLYTIN--AVGTVDEIFEQVRPI 221 (234)
T ss_pred HHHHHHHHHcCcCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE--CCCCHHHHHHHHHHH
Confidence 9999999999963 1222 24566666666665533311 1234688899 778999999999874
No 32
>PRK02496 adk adenylate kinase; Provisional
Probab=99.42 E-value=3.6e-12 Score=115.79 Aligned_cols=72 Identities=21% Similarity=0.340 Sum_probs=53.8
Q ss_pred CCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccc---cCCCCcEEEEeCCCCCChhHHHHHH
Q psy6807 215 KPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQ---ISDSSELLVYDWSDGGDPEVVVEDI 291 (395)
Q Consensus 215 ~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~---~~~~~~vli~D~t~~~~~e~V~edI 291 (395)
.|+++|+|++|++++.+|+..|+++.. +.+++++..+.|++...+. .++...++.+| +.+++++|.++|
T Consensus 107 ~~~~vi~l~~~~~~~~~Rl~~R~~~dd------~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Id--a~~~~~~V~~~i 178 (184)
T PRK02496 107 SGERVVNLDVPDDVVVERLLARGRKDD------TEEVIRRRLEVYREQTAPLIDYYRDRQKLLTID--GNQSVEAVTTEL 178 (184)
T ss_pred CCCEEEEEeCCHHHHHHHHhcCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE--CCCCHHHHHHHH
Confidence 589999999999999999999987533 2567777777777622211 12234578899 888999999999
Q ss_pred HHh
Q psy6807 292 ERI 294 (395)
Q Consensus 292 e~l 294 (395)
...
T Consensus 179 ~~~ 181 (184)
T PRK02496 179 KAA 181 (184)
T ss_pred HHH
Confidence 763
No 33
>PRK13808 adenylate kinase; Provisional
Probab=99.40 E-value=5.4e-12 Score=124.74 Aligned_cols=184 Identities=15% Similarity=0.141 Sum_probs=97.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHHH
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIRM 150 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~~ 150 (395)
.|+|.|+|||||||+++.|++.+|+.++...++-...+..+.... .. ...+..... .-+-.....+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g---~~----------~~~~~~~G~-lVPdeiv~~l 67 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVG---LK----------AKDIMASGG-LVPDEVVVGI 67 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhh---HH----------HHHHHHcCC-CCCHHHHHHH
Confidence 488999999999999999999999988854321110000000000 00 001111100 0011122222
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHHH
Q psy6807 151 LQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVK 230 (395)
Q Consensus 151 ~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~~ 230 (395)
+..++.+ . ....++|+|.+|-+-- +...+.+++. ..-..||++|+|++|+++++
T Consensus 68 i~e~l~~-------~-~~~~G~ILDGFPRt~~---------------QA~~L~~ll~---~~gi~PDlVI~LDVp~evll 121 (333)
T PRK13808 68 ISDRIEQ-------P-DAANGFILDGFPRTVP---------------QAEALDALLK---DKQLKLDAVVELRVNEGALL 121 (333)
T ss_pred HHHHHhc-------c-cccCCEEEeCCCCCHH---------------HHHHHHHHHH---hcCCCcCeEEEEECCHHHHH
Confidence 2233221 1 2346899998773311 1111111111 11236999999999999999
Q ss_pred HHHhhcCCc----cccCCCCCcHHHHHHHHHHHHhhcccc---cCCCCcEEEEeCCCCCChhHHHHHHHHhhh
Q psy6807 231 ENVKKRNNP----WEVNSPIFNDKYLHEIEDLYKNNYLPQ---ISDSSELLVYDWSDGGDPEVVVEDIERIDF 296 (395)
Q Consensus 231 eRI~~Rgr~----~E~~~~~v~~~yl~~l~~~Yk~~~l~~---~~~~~~vli~D~t~~~~~e~V~edIe~l~f 296 (395)
+|+..|... .+.....-+.+.+..-...|++...|. +.+...++.|| ..+++|+|.++|..+.-
T Consensus 122 ~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~ID--a~~siEEV~eeI~~~L~ 192 (333)
T PRK13808 122 ARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVD--GMMTIDEVTREIGRVLA 192 (333)
T ss_pred HHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEE--CCCCHHHHHHHHHHHHH
Confidence 999987311 000001112333333335566553221 12234588889 88999999999988543
No 34
>PRK06762 hypothetical protein; Provisional
Probab=99.40 E-value=6.4e-12 Score=112.10 Aligned_cols=157 Identities=15% Similarity=0.240 Sum_probs=87.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhc--cccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELD--MIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~--~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
+++|+|+|++||||||+|+.|++.++ ..++.. |. ++ ..+ ...+ ..+. ....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~---D~--------~r---~~l---------~~~~-~~~~---~~~~ 54 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ---DV--------VR---RDM---------LRVK-DGPG---NLSI 54 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH---HH--------HH---HHh---------cccc-CCCC---CcCH
Confidence 57999999999999999999999984 333321 11 00 000 0000 1111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
.. +.+ .....+..|..||+|...... .|.++..........|..+|||++|+
T Consensus 55 ~~------~~~---~~~~~~~~g~~vild~~~~~~-------------------~~~~~~~~l~~~~~~~~~~v~Ldap~ 106 (166)
T PRK06762 55 DL------IEQ---LVRYGLGHCEFVILEGILNSD-------------------RYGPMLKELIHLFRGNAYTYYFDLSF 106 (166)
T ss_pred HH------HHH---HHHHHHhCCCEEEEchhhccH-------------------hHHHHHHHHHHhcCCCeEEEEEeCCH
Confidence 10 111 112235678889998543211 11122222222233478999999999
Q ss_pred HHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 227 SKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 227 e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
++|.+|+.+|++... ++. +.++..|+..-.. +....++.+ +..++++|+++|-.
T Consensus 107 e~~~~R~~~R~~~~~-----~~~---~~l~~~~~~~~~~---~~~~~~~~~--~~~~~~~v~~~i~~ 160 (166)
T PRK06762 107 EETLRRHSTRPKSHE-----FGE---DDMRRWWNPHDTL---GVIGETIFT--DNLSLKDIFDAILT 160 (166)
T ss_pred HHHHHHHhccccccc-----CCH---HHHHHHHhhcCCc---CCCCeEEec--CCCCHHHHHHHHHH
Confidence 999999999976322 223 3445555443221 123455544 67899999998854
No 35
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.39 E-value=2e-11 Score=108.58 Aligned_cols=161 Identities=19% Similarity=0.130 Sum_probs=91.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHHHH
Q psy6807 72 IVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIRML 151 (395)
Q Consensus 72 I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~~~ 151 (395)
|+|.|++||||||+|+.|++.++..++.. |..... ...+ .. ..+.-+.+.. ....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~---D~~~~~--~~~~---~~---------~~~~~~~~~~--------~~~~ 55 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEG---DDLHPA--ANIE---KM---------SAGIPLNDDD--------RWPW 55 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeC---ccccCh--HHHH---HH---------HcCCCCChhh--------HHHH
Confidence 57899999999999999999999877743 221100 0000 00 0000000100 0111
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHHHH
Q psy6807 152 QLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKE 231 (395)
Q Consensus 152 ~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~~e 231 (395)
. ....+.+...+..|..+|++.+..+. .+.+... ....+..+|||++|++++.+
T Consensus 56 ~---~~~~~~~~~~l~~~~~~Vi~~t~~~~-------------------~~r~~~~----~~~~~~~~i~l~~~~e~~~~ 109 (163)
T TIGR01313 56 L---QNLNDASTAAAAKNKVGIITCSALKR-------------------HYRDILR----EAEPNLHFIYLSGDKDVILE 109 (163)
T ss_pred H---HHHHHHHHHHHhcCCCEEEEecccHH-------------------HHHHHHH----hcCCCEEEEEEeCCHHHHHH
Confidence 1 12223334456677777777553211 1122222 12234567999999999999
Q ss_pred HHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 232 NVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 232 RI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
|++.|+.. + .+. +.++..|.+...+... ..+++++| +.+++++|.++|.+.-
T Consensus 110 R~~~R~~~-~-----~~~---~~i~~~~~~~~~~~~~-e~~~~~id--~~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 110 RMKARKGH-F-----MKA---DMLESQFAALEEPLAD-ETDVLRVD--IDQPLEGVEEDCIAVV 161 (163)
T ss_pred HHHhccCC-C-----CCH---HHHHHHHHHhCCCCCC-CCceEEEE--CCCCHHHHHHHHHHHH
Confidence 99999742 1 122 3456666654444332 25789999 7888999999987643
No 36
>PRK14527 adenylate kinase; Provisional
Probab=99.39 E-value=1.3e-11 Score=113.09 Aligned_cols=178 Identities=15% Similarity=0.220 Sum_probs=97.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc---CCCccccchhhhhhhhhhhhhhhhhcCCCCCccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR---GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHT 143 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~---~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~ 143 (395)
.++++|+|.|+|||||||+|+.||++++..++... ..+.. .+.... .. ...+..... ..+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~g---d~~r~~~~~~~~~~---~~----------~~~~~~~g~-~~p 66 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTG---DILRDHVARGTELG---QR----------AKPIMEAGD-LVP 66 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCcc---HHHHHHHhcCcHHH---HH----------HHHHHHcCC-CCc
Confidence 46789999999999999999999999999887432 21111 000000 00 001111100 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEE
Q psy6807 144 IAFQIRMLQLRFSVYVDALAHMLS--TGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIY 221 (395)
Q Consensus 144 ~~~ql~~~~~R~~q~~~al~~~l~--tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIy 221 (395)
-.. ....+...+. .+.++|+|.++-+ .. +...+..+... .-..++.+|+
T Consensus 67 ~~~-----------~~~l~~~~l~~~~~~~~VlDGfpr~-~~--------------q~~~~~~~~~~---~g~~~~~vi~ 117 (191)
T PRK14527 67 DEL-----------ILALIRDELAGMEPVRVIFDGFPRT-LA--------------QAEALDRLLEE---LGARLLAVVL 117 (191)
T ss_pred HHH-----------HHHHHHHHHhcCCCCcEEEcCCCCC-HH--------------HHHHHHHHHHH---cCCCCCEEEE
Confidence 000 0111112222 2457999976522 11 11112222221 1135788999
Q ss_pred EECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhccccc---CCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 222 LDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQI---SDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 222 Ld~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~---~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
|++|.+++.+|+.+|+...-. ..-+.+.++.....|.+...|.. .+...++.+| +.+++++|.++|...
T Consensus 118 l~~~~~~~~~Rl~~R~~~~~r--~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id--~~~~~~~v~~~i~~~ 189 (191)
T PRK14527 118 LEVPDEELIRRIVERARQEGR--SDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVD--GLGTPDEVYARILKA 189 (191)
T ss_pred EECCHHHHHHHHHcCcccCCC--CCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEE--CCCCHHHHHHHHHHh
Confidence 999999999999999732100 00124444444455555433221 2234588889 889999999999763
No 37
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.37 E-value=6e-12 Score=115.89 Aligned_cols=181 Identities=16% Similarity=0.158 Sum_probs=98.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhh-------hhhhhhhhhcCCCCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNEN-------LKSYDEKTFCKDPKH 140 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~-------~~~~~~~~f~~dp~~ 140 (395)
+++|+|+|++||||||+++.|++ +|..++..+.+-+.... .+..+..+...+|++. .+.......|.+|+.
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 46899999999999999999998 89988854433222221 2222333333343221 223334445666643
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEE
Q psy6807 141 FHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVI 220 (395)
Q Consensus 141 ~~~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvI 220 (395)
.......++-...+ +....+. .......||+|- +.+++.|+. ..+|.+|
T Consensus 81 ~~~L~~i~hP~v~~--~~~~~~~-~~~~~~~vv~e~---------pll~e~~~~-------------------~~~D~vi 129 (194)
T PRK00081 81 RKKLEAILHPLIRE--EILEQLQ-EAESSPYVVLDI---------PLLFENGLE-------------------KLVDRVL 129 (194)
T ss_pred HHHHHHHHHHHHHH--HHHHHHH-HcccCCEEEEEe---------hHhhcCCch-------------------hhCCeEE
Confidence 22222223322211 1111111 111235678883 333433321 1368999
Q ss_pred EEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 221 YLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 221 yLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++++|++++.+|+.+|++-.+ .++.+.+... .-.......+++++ | |.++.+++.+++..+
T Consensus 130 ~V~a~~e~~~~Rl~~R~~~s~-------e~~~~ri~~Q---~~~~~~~~~ad~vI-~--N~g~~e~l~~qv~~i 190 (194)
T PRK00081 130 VVDAPPETQLERLMARDGLSE-------EEAEAIIASQ---MPREEKLARADDVI-D--NNGDLEELRKQVERL 190 (194)
T ss_pred EEECCHHHHHHHHHHcCCCCH-------HHHHHHHHHh---CCHHHHHHhCCEEE-E--CCCCHHHHHHHHHHH
Confidence 999999999999999864211 2333333321 11111123466544 6 678999999998875
No 38
>PRK14530 adenylate kinase; Provisional
Probab=99.36 E-value=3.4e-11 Score=112.39 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
.+.|+|.|+|||||||+|+.||+++|..++.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 3579999999999999999999999998884
No 39
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.36 E-value=2.7e-11 Score=110.87 Aligned_cols=168 Identities=24% Similarity=0.305 Sum_probs=101.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQI 148 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql 148 (395)
+++|+++|.|||||||+|+.||+.|.-.....++....|.. .+..|... ...-+.
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~-----------------------~i~~DEsl--pi~ke~ 55 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR-----------------------GILWDESL--PILKEV 55 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh-----------------------heeccccc--chHHHH
Confidence 46899999999999999999999998776654443321211 01111000 000000
Q ss_pred --HHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 149 --RMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 149 --~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
.+...+....+++ .+ ....||.|..- |+..--++.+.+.. ....++.+|||.+|+
T Consensus 56 yres~~ks~~rlldS---al-kn~~VIvDdtN--------------YyksmRrqL~ceak-----~~~tt~ciIyl~~pl 112 (261)
T COG4088 56 YRESFLKSVERLLDS---AL-KNYLVIVDDTN--------------YYKSMRRQLACEAK-----ERKTTWCIIYLRTPL 112 (261)
T ss_pred HHHHHHHHHHHHHHH---Hh-cceEEEEeccc--------------HHHHHHHHHHHHHH-----hcCCceEEEEEccCH
Confidence 0111111111111 11 25678888432 22222233333333 334689999999999
Q ss_pred HHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhccccc--CCCCcEEEEeCCCCCChhHHHHHHHHhhh
Q psy6807 227 SKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQI--SDSSELLVYDWSDGGDPEVVVEDIERIDF 296 (395)
Q Consensus 227 e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~--~~~~~vli~D~t~~~~~e~V~edIe~l~f 296 (395)
++|.+|-.+||.|++ .+-++.+.+.|++ |.- .-.++++++| ...+..+++++|+...+
T Consensus 113 Dtc~rrN~ergepip-------~Evl~qly~RfEe---Pn~~~rWDspll~id--~~d~~t~~IDfiesvl~ 172 (261)
T COG4088 113 DTCLRRNRERGEPIP-------EEVLRQLYDRFEE---PNPDRRWDSPLLVID--DSDVSTEVIDFIESVLR 172 (261)
T ss_pred HHHHHhhccCCCCCC-------HHHHHHHHHhhcC---CCCCccccCceEEEe--cccccccchhHHHHHHH
Confidence 999999988887754 5666666666653 332 2357899999 57788899999998877
No 40
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.35 E-value=1.2e-11 Score=114.18 Aligned_cols=181 Identities=16% Similarity=0.154 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhh--------hhhhhhhhhcCCCCC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNEN--------LKSYDEKTFCKDPKH 140 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~--------~~~~~~~~f~~dp~~ 140 (395)
++|+|+|++||||||+++.|++.+|..++..+.+-+.... .+.-+..+...||+.. .+....+..|.||..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 5799999999999999999999889999865443322222 2222234444443221 223344556677653
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEE
Q psy6807 141 FHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVI 220 (395)
Q Consensus 141 ~~~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvI 220 (395)
+..+...++-+..+ .....+.. ......||+| .+.+++.|+- ...|.+|
T Consensus 82 ~~~l~~i~hP~i~~--~~~~~~~~-~~~~~~vv~e---------~pll~E~~~~-------------------~~~D~ii 130 (195)
T PRK14730 82 RRWLENLIHPYVRE--RFEEELAQ-LKSNPIVVLV---------IPLLFEAKLT-------------------DLCSEIW 130 (195)
T ss_pred HHHHHHHHhHHHHH--HHHHHHHh-cCCCCEEEEE---------eHHhcCcchH-------------------hCCCEEE
Confidence 32222333322211 11112211 2224567777 2333332211 1368999
Q ss_pred EEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 221 YLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 221 yLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
+++||.+++.+|+.+|+.-.+ .++.+++.. ++-.......+++++ + |.++.+++.++++++
T Consensus 131 ~V~a~~e~r~~Rl~~R~g~s~-------e~~~~ri~~---Q~~~~~k~~~aD~vI-~--N~g~~e~l~~qv~~~ 191 (195)
T PRK14730 131 VVDCSPEQQLQRLIKRDGLTE-------EEAEARINA---QWPLEEKVKLADVVL-D--NSGDLEKLYQQVDQL 191 (195)
T ss_pred EEECCHHHHHHHHHHcCCCCH-------HHHHHHHHh---CCCHHHHHhhCCEEE-E--CCCCHHHHHHHHHHH
Confidence 999999999999999962111 223333332 221111223577755 5 788999999999875
No 41
>PRK13948 shikimate kinase; Provisional
Probab=99.35 E-value=5e-12 Score=115.40 Aligned_cols=159 Identities=16% Similarity=0.220 Sum_probs=90.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIA 145 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~ 145 (395)
+.+..|++.|++||||||+++.||+.||..++ +.|..+.+ .|..+.+++... +.. .|+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~i---D~D~~ie~~~g~si~~if~~~--------Ge~----------~fR 66 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFI---DTDRYIERVTGKSIPEIFRHL--------GEA----------YFR 66 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE---ECCHHHHHHHhCCHHHHHHHh--------CHH----------HHH
Confidence 35679999999999999999999999999998 45554444 555544333222 000 011
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCE
Q psy6807 146 FQIRMLQLRFSVYVDALAHM-------LSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHL 218 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~-------l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~Pdl 218 (395)
... ...+..+ +++|.+++++. .... .. .....
T Consensus 67 ~~E----------~~~l~~l~~~~~~VIa~GgG~v~~~--------------------~n~~----~l-------~~~g~ 105 (182)
T PRK13948 67 RCE----------AEVVRRLTRLDYAVISLGGGTFMHE--------------------ENRR----KL-------LSRGP 105 (182)
T ss_pred HHH----------HHHHHHHHhcCCeEEECCCcEEcCH--------------------HHHH----HH-------HcCCe
Confidence 100 1112222 23344433321 1111 11 12467
Q ss_pred EEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhh
Q psy6807 219 VIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDF 296 (395)
Q Consensus 219 vIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f 296 (395)
+|||++|++++.+|+..++||.-... +-.+.+.+.|++.- +.. +.+++. +| ++..+++++++.|...-.
T Consensus 106 vV~L~~~~e~l~~Rl~~~~RPll~~~-----~~~~~l~~l~~~R~-~~Y-~~a~~~-i~-t~~~~~~ei~~~i~~~l~ 174 (182)
T PRK13948 106 VVVLWASPETIYERTRPGDRPLLQVE-----DPLGRIRTLLNERE-PVY-RQATIH-VS-TDGRRSEEVVEEIVEKLW 174 (182)
T ss_pred EEEEECCHHHHHHHhcCCCCCCCCCC-----ChHHHHHHHHHHHH-HHH-HhCCEE-EE-CCCCCHHHHHHHHHHHHH
Confidence 99999999999999976666654320 11234444444321 111 124554 45 467899999999876443
No 42
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=5.2e-11 Score=103.67 Aligned_cols=155 Identities=19% Similarity=0.220 Sum_probs=100.0
Q ss_pred EcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHHHHHHH
Q psy6807 75 EGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIRMLQLR 154 (395)
Q Consensus 75 ~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~~~~~R 154 (395)
.|.+||||||+++.||++||++++..+++ . + |.+......+.-++|-. ++.+...+
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdl-----------H---p---~aNi~KM~~GiPL~DdD-R~pWL~~l------ 56 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDL-----------H---P---PANIEKMSAGIPLNDDD-RWPWLEAL------ 56 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceeccccc-----------C---C---HHHHHHHhCCCCCCcch-hhHHHHHH------
Confidence 38999999999999999999999854321 1 1 33333344455555533 44442222
Q ss_pred HHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHHHHHHh
Q psy6807 155 FSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVK 234 (395)
Q Consensus 155 ~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~~eRI~ 234 (395)
-+++......|..+|+-+|. ....|.++.+...+. -..|||+.+.+++++|++
T Consensus 57 ----~~~~~~~~~~~~~~vi~CSA-------------------LKr~YRD~LR~~~~~----~~Fv~L~g~~~~i~~Rm~ 109 (161)
T COG3265 57 ----GDAAASLAQKNKHVVIACSA-------------------LKRSYRDLLREANPG----LRFVYLDGDFDLILERMK 109 (161)
T ss_pred ----HHHHHHhhcCCCceEEecHH-------------------HHHHHHHHHhccCCC----eEEEEecCCHHHHHHHHH
Confidence 22333344567767777653 235677777654322 368999999999999999
Q ss_pred hcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 235 KRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 235 ~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
+|...+.. .+.+ ...+...-.|.. ..+++++| ..+++++|++++-.
T Consensus 110 ~R~gHFM~------~~ll---~SQfa~LE~P~~--de~vi~id--i~~~~e~vv~~~~~ 155 (161)
T COG3265 110 ARKGHFMP------ASLL---DSQFATLEEPGA--DEDVLTID--IDQPPEEVVAQALA 155 (161)
T ss_pred hcccCCCC------HHHH---HHHHHHhcCCCC--CCCEEEee--CCCCHHHHHHHHHH
Confidence 99987743 3333 334443222322 23799999 88899999998755
No 43
>PRK14528 adenylate kinase; Provisional
Probab=99.33 E-value=4.5e-11 Score=109.35 Aligned_cols=175 Identities=17% Similarity=0.228 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQI 148 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql 148 (395)
+.|+|.|+|||||||+|+.|++++|..++.. +..+.. .. ... .++.. ...+.+.-+ .-.-....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~---~~~lr~~~~-~~~----~~g~~------~~~~~~~g~-lvp~~~~~ 66 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST---GDILREAVK-NQT----AMGIE------AKRYMDAGD-LVPDSVVI 66 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC---CHHHHHHhh-cCC----HHHHH------HHHHHhCCC-ccCHHHHH
Confidence 5799999999999999999999999988743 322211 00 000 00000 011111111 00001111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHH
Q psy6807 149 RMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSK 228 (395)
Q Consensus 149 ~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~ 228 (395)
..+. +.+... ....++|+|..+.+.- +...+.++.. .....|+++|+|++|+++
T Consensus 67 ~~~~-------~~l~~~-~~~~g~viDG~Pr~~~---------------qa~~l~~~~~---~~~~~~d~vI~Ld~~~~~ 120 (186)
T PRK14528 67 GIIK-------DRIREA-DCKNGFLLDGFPRTVE---------------QADALDALLK---NEGKSIDKAINLEVPDGE 120 (186)
T ss_pred HHHH-------HHHhCc-CccCcEEEeCCCCCHH---------------HHHHHHHHHH---hcCCCCCEEEEEECCHHH
Confidence 1111 122211 2346789997764321 1111122211 112368999999999999
Q ss_pred HHHHHhhcC----CccccCCCCCcHHHHHHHHHHHHhhcccccC---CCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 229 VKENVKKRN----NPWEVNSPIFNDKYLHEIEDLYKNNYLPQIS---DSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 229 ~~eRI~~Rg----r~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~---~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
+.+|+..|. +... +.+-+.+--..|++...|-+. +..-++.+| +.+++++|.++|..
T Consensus 121 ~~~Rl~~R~~~~gr~dd------~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~--~~~~~~~v~~~~~~ 184 (186)
T PRK14528 121 LLKRLLGRAEIEGRADD------NEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVN--GVGSLEEVTSLIQK 184 (186)
T ss_pred HHHHHhcCccccCCCCC------CHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEE--CCCCHHHHHHHHHH
Confidence 999999884 3321 133333333345544443322 234688888 88899999999875
No 44
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.32 E-value=1.4e-11 Score=113.79 Aligned_cols=179 Identities=13% Similarity=0.119 Sum_probs=101.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhh-------hhhhhhhhhcCCCCCcc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNEN-------LKSYDEKTFCKDPKHFH 142 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~-------~~~~~~~~f~~dp~~~~ 142 (395)
+|+|+|++||||||+++.|++ +|..++..+.+.+...+ .+..+..+...||+.. .+....+..|.+|+...
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 489999999999999999986 68887754433332222 2223334444454332 23445566677776432
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEE
Q psy6807 143 TIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYL 222 (395)
Q Consensus 143 ~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyL 222 (395)
.....++-+..+ . ..........+..||+|- +.+++.|+. ...|.+||+
T Consensus 80 ~L~~i~hP~v~~--~-~~~~~~~~~~~~~vi~e~---------pLL~E~~~~-------------------~~~D~vi~V 128 (196)
T PRK14732 80 ALNELIHPLVRK--D-FQKILQTTAEGKLVIWEV---------PLLFETDAY-------------------TLCDATVTV 128 (196)
T ss_pred HHHHHhhHHHHH--H-HHHHHHHHhcCCcEEEEe---------eeeeEcCch-------------------hhCCEEEEE
Confidence 233333322211 1 111111122345677772 233333321 135999999
Q ss_pred ECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 223 DIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 223 d~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++|++++.+|+.+|+.-.+ .+...++.. |....+..+.+++++ + |.++.+.+..+++.+
T Consensus 129 ~a~~e~r~~RL~~R~g~s~-------e~a~~ri~~---Q~~~~~k~~~aD~vI-~--N~~~~~~l~~~v~~l 187 (196)
T PRK14732 129 DSDPEESILRTISRDGMKK-------EDVLARIAS---QLPITEKLKRADYIV-R--NDGNREGLKEECKIL 187 (196)
T ss_pred ECCHHHHHHHHHHcCCCCH-------HHHHHHHHH---cCCHHHHHHhCCEEE-E--CCCCHHHHHHHHHHH
Confidence 9999999999999963211 122223322 222222234578765 4 788999999999875
No 45
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.31 E-value=2.2e-11 Score=109.21 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
+.|+|+|++||||||+++.||+++|.+++.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d 32 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVD 32 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 568999999999999999999999998883
No 46
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.31 E-value=1.6e-11 Score=112.12 Aligned_cols=173 Identities=14% Similarity=0.179 Sum_probs=92.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
+.+|+|.|++||||||+++.|+..++..++. .+..+.. ........... ..+.|+..-+.. .+...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~ 68 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLV---AHRYITRPASAGSENHIAL---------SEQEFFTRAGQN-LFALS 68 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEE---cCEECCCccchhHHhheeE---------cHHHHHHHHHCC-chhhH
Confidence 4689999999999999999999987654331 1111111 11111111110 112222211110 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChH
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVS 227 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e 227 (395)
..+....|.... .+...++.|..||++.+- ....++.. .+..+..+|||++|.+
T Consensus 69 ~~~~g~~yg~~~-~~~~~l~~g~~VI~~G~~---------------------~~~~~~~~----~~~~~~~vi~l~~s~e 122 (186)
T PRK10078 69 WHANGLYYGVGI-EIDLWLHAGFDVLVNGSR---------------------AHLPQARA----RYQSALLPVCLQVSPE 122 (186)
T ss_pred HHHhCCccCCcH-HHHHHHhCCCEEEEeChH---------------------HHHHHHHH----HcCCCEEEEEEeCCHH
Confidence 111111122222 245566788889876431 11111222 1234568899999999
Q ss_pred HHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhh
Q psy6807 228 KVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDF 296 (395)
Q Consensus 228 ~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f 296 (395)
++.+|+..|+++.+ .+..+++... . .+ ..++++++| +++++++++++|..+-.
T Consensus 123 ~l~~RL~~R~~~~~-------~~i~~rl~r~-~-~~-----~~ad~~vi~--~~~s~ee~~~~i~~~l~ 175 (186)
T PRK10078 123 ILRQRLENRGRENA-------SEINARLARA-A-RY-----QPQDCHTLN--NDGSLRQSVDTLLTLLH 175 (186)
T ss_pred HHHHHHHHhCCCCH-------HHHHHHHHHh-h-hh-----ccCCEEEEe--CCCCHHHHHHHHHHHHh
Confidence 99999999876532 1222333221 1 01 135777777 77899999999987543
No 47
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.31 E-value=1.1e-11 Score=112.02 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
.+.|+|.|++||||||+++.||+.+++.++.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd 34 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEE
Confidence 4579999999999999999999999988873
No 48
>PLN02422 dephospho-CoA kinase
Probab=99.30 E-value=2e-11 Score=115.37 Aligned_cols=182 Identities=12% Similarity=0.145 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhh-------hhhhhhhhhcCCCCCc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNEN-------LKSYDEKTFCKDPKHF 141 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~-------~~~~~~~~f~~dp~~~ 141 (395)
++|+|+|++||||||+++.|+ ++|..+++.+.+.+.... .+..+..+...||++. .+....+..|.||+..
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 579999999999999999999 589998865443332322 2222344445554332 3445566677887643
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEE
Q psy6807 142 HTIAFQIRMLQLRFSVYVDALAHMLSTG-QGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVI 220 (395)
Q Consensus 142 ~~~~~ql~~~~~R~~q~~~al~~~l~tG-~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvI 220 (395)
......+|-...+ .....+......+ ..||+| .+.+++.|+- ...|.+|
T Consensus 81 ~~Le~IlHP~V~~--~~~~~~~~~~~~~~~~vv~e---------ipLL~E~~~~-------------------~~~D~vI 130 (232)
T PLN02422 81 QLLNRLLAPYISS--GIFWEILKLWLKGCKVIVLD---------IPLLFETKMD-------------------KWTKPVV 130 (232)
T ss_pred HHHHHHhhHHHHH--HHHHHHHHHHhcCCCEEEEE---------ehhhhhcchh-------------------hhCCEEE
Confidence 3333333322211 1111111111123 466777 3344443321 1359999
Q ss_pred EEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 221 YLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 221 yLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
+++||++++.+|+.+|++--+ .+...++.... -.......+++++ + |.++.+++..+++.+-
T Consensus 131 ~V~a~~e~ri~RL~~R~g~s~-------eea~~Ri~~Q~---~~eek~~~AD~VI-~--N~gs~e~L~~qv~~ll 192 (232)
T PLN02422 131 VVWVDPETQLERLMARDGLSE-------EQARNRINAQM---PLDWKRSKADIVI-D--NSGSLEDLKQQFQKVL 192 (232)
T ss_pred EEECCHHHHHHHHHHcCCCCH-------HHHHHHHHHcC---ChhHHHhhCCEEE-E--CCCCHHHHHHHHHHHH
Confidence 999999999999999963111 22333332211 1111123567655 5 7889999999999873
No 49
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.29 E-value=2.3e-11 Score=115.79 Aligned_cols=185 Identities=14% Similarity=0.125 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhh-------hhhhhhhhhcCCCCCc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNEN-------LKSYDEKTFCKDPKHF 141 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~-------~~~~~~~~f~~dp~~~ 141 (395)
.+|+|+|++||||||+++.|++++|.+.++.+.+.+...+ .+.....+...||... .|.......|.||+.+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 6899999999999999999999899998865443333222 2222233333332111 3444556667777543
Q ss_pred ccHHHHHHHHHHH-HHHHHHH-----HHHHHh-cC-CeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCC
Q psy6807 142 HTIAFQIRMLQLR-FSVYVDA-----LAHMLS-TG-QGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPL 213 (395)
Q Consensus 142 ~~~~~ql~~~~~R-~~q~~~a-----l~~~l~-tG-~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l 213 (395)
......++-...+ +.+.+.+ +...+. .+ ..||+| .+.+++.|...
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~e---------vPLL~E~~~~~------------------ 134 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLD---------APTLFETKTFT------------------ 134 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEE---------echhhccCchh------------------
Confidence 3333333322211 1111110 001111 22 377888 33344433110
Q ss_pred CCCCEEEEEECChHHHHHHHhhcCC-ccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCC--CChhHHHHH
Q psy6807 214 FKPHLVIYLDIPVSKVKENVKKRNN-PWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDG--GDPEVVVED 290 (395)
Q Consensus 214 ~~PdlvIyLd~p~e~~~eRI~~Rgr-~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~--~~~e~V~ed 290 (395)
...|.+|++.+|.++..+|+.+|+. +.| +..+++.. |.-..+....+++++ + |+ ++.+++..+
T Consensus 135 ~~~D~iv~V~a~~e~ri~RL~~R~g~s~e--------ea~~Ri~~---Q~~~~ek~~~aD~VI-~--N~~~g~~~~L~~~ 200 (244)
T PTZ00451 135 YFVSASVVVSCSEERQIERLRKRNGFSKE--------EALQRIGS---QMPLEEKRRLADYII-E--NDSADDLDELRGS 200 (244)
T ss_pred hcCCeEEEEECCHHHHHHHHHHcCCCCHH--------HHHHHHHh---CCCHHHHHHhCCEEE-E--CCCCCCHHHHHHH
Confidence 1259999999999999999999853 221 22222222 211112234577766 4 56 899999999
Q ss_pred HHHhh
Q psy6807 291 IERID 295 (395)
Q Consensus 291 Ie~l~ 295 (395)
|+.+.
T Consensus 201 v~~~~ 205 (244)
T PTZ00451 201 VCDCV 205 (244)
T ss_pred HHHHH
Confidence 98863
No 50
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.29 E-value=1.4e-11 Score=114.13 Aligned_cols=179 Identities=12% Similarity=0.134 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhh-------hhhhhhhhhcCCCCCc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNEN-------LKSYDEKTFCKDPKHF 141 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~-------~~~~~~~~f~~dp~~~ 141 (395)
++|+|+|++||||||+++.|++ +|..++..+.+.+.... .+.....+...+|+.. .+....+..|.||+..
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 5899999999999999999997 79988865433222333 3333444544454322 2344455667776532
Q ss_pred ccHHHHHHHHH-HHHHHHHHHHHHHHhcC-CeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEE
Q psy6807 142 HTIAFQIRMLQ-LRFSVYVDALAHMLSTG-QGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLV 219 (395)
Q Consensus 142 ~~~~~ql~~~~-~R~~q~~~al~~~l~tG-~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~Pdlv 219 (395)
......++-.. .++.+ .+......| ..|+++. ..+++.|+- ..+|.+
T Consensus 81 ~~le~i~hP~v~~~~~~---~~~~~~~~~~~~vv~e~---------plL~e~g~~-------------------~~~D~v 129 (200)
T PRK14734 81 ALLNAITHPRIAEETAR---RFNEARAQGAKVAVYDM---------PLLVEKGLD-------------------RKMDLV 129 (200)
T ss_pred HHHHHhhCHHHHHHHHH---HHHHHHhcCCCEEEEEe---------eceeEcCcc-------------------ccCCeE
Confidence 22222222221 11111 112222233 3456662 222222211 146999
Q ss_pred EEEECChHHHHHHHhhcC-CccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 220 IYLDIPVSKVKENVKKRN-NPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 220 IyLd~p~e~~~eRI~~Rg-r~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
|||++|++++.+|+.+|+ .+.| +....+....... .....++++ +| |.++.+.+.++++.+
T Consensus 130 i~V~a~~e~ri~Rl~~R~g~s~e--------~~~~ri~~Q~~~~---~k~~~ad~v-I~--N~g~~e~l~~~v~~~ 191 (200)
T PRK14734 130 VVVDVDVEERVRRLVEKRGLDED--------DARRRIAAQIPDD---VRLKAADIV-VD--NNGTREQLLAQVDGL 191 (200)
T ss_pred EEEECCHHHHHHHHHHcCCCCHH--------HHHHHHHhcCCHH---HHHHhCCEE-EE--CcCCHHHHHHHHHHH
Confidence 999999999999998884 2222 2222222211110 011346664 56 788999999999875
No 51
>PRK13946 shikimate kinase; Provisional
Probab=99.29 E-value=1.6e-10 Score=105.30 Aligned_cols=163 Identities=17% Similarity=0.236 Sum_probs=90.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
.+.|+|+|++||||||+++.||++||++++.. |..... .|..+.++...+ +.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~---D~~~~~~~g~~~~e~~~~~--------ge---------------- 62 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDA---DTEIERAARMTIAEIFAAY--------GE---------------- 62 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECc---CHHHHHHhCCCHHHHHHHH--------CH----------------
Confidence 46899999999999999999999999999843 332222 332222111110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChH
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVS 227 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e 227 (395)
.+ +... ....+..++..+..||..+.- .++.+.... ... .-.++|||++|++
T Consensus 63 ~~-~~~~---e~~~l~~l~~~~~~Vi~~ggg-------------~~~~~~~r~----~l~-------~~~~~v~L~a~~e 114 (184)
T PRK13946 63 PE-FRDL---ERRVIARLLKGGPLVLATGGG-------------AFMNEETRA----AIA-------EKGISVWLKADLD 114 (184)
T ss_pred HH-HHHH---HHHHHHHHHhcCCeEEECCCC-------------CcCCHHHHH----HHH-------cCCEEEEEECCHH
Confidence 00 0000 012233344556666665421 112211111 111 1368899999999
Q ss_pred HHHHHHhhcC-CccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 228 KVKENVKKRN-NPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 228 ~~~eRI~~Rg-r~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
++.+|+..|. +|..... -..+.++.+.+.....|. .+++.+ | ++..+++++++.|...-
T Consensus 115 ~~~~Rl~~r~~rp~~~~~--~~~~~i~~~~~~R~~~y~-----~~dl~i-~-~~~~~~~~~~~~i~~~i 174 (184)
T PRK13946 115 VLWERVSRRDTRPLLRTA--DPKETLARLMEERYPVYA-----EADLTV-A-SRDVPKEVMADEVIEAL 174 (184)
T ss_pred HHHHHhcCCCCCCcCCCC--ChHHHHHHHHHHHHHHHH-----hCCEEE-E-CCCCCHHHHHHHHHHHH
Confidence 9999999886 3432210 123444544443333221 246544 5 46779999999987643
No 52
>PRK13947 shikimate kinase; Provisional
Probab=99.29 E-value=8.8e-11 Score=105.05 Aligned_cols=68 Identities=22% Similarity=0.272 Sum_probs=43.1
Q ss_pred CEEEEEECChHHHHHHHhhcCC-ccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 217 HLVIYLDIPVSKVKENVKKRNN-PWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 217 dlvIyLd~p~e~~~eRI~~Rgr-~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
+++|||++|++++.+|+..|+. +.... .++.+.+.+.|++.- +.. +.+++ ++| ++..+++++++.|..
T Consensus 95 ~~vv~L~~~~~~l~~Rl~~r~~rp~~~~-----~~~~~~i~~~~~~r~-~~y-~~ad~-~Id-t~~~~~~~i~~~I~~ 163 (171)
T PRK13947 95 GVVICLKARPEVILRRVGKKKSRPLLMV-----GDPEERIKELLKERE-PFY-DFADY-TID-TGDMTIDEVAEEIIK 163 (171)
T ss_pred CEEEEEECCHHHHHHHhcCCCCCCCCCC-----CChHHHHHHHHHHHH-HHH-HhcCE-EEE-CCCCCHHHHHHHHHH
Confidence 5799999999999999987753 32111 223344444444321 111 12454 456 467899999999977
No 53
>PRK04182 cytidylate kinase; Provisional
Probab=99.29 E-value=2.7e-11 Score=108.71 Aligned_cols=30 Identities=37% Similarity=0.602 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
++|+|+|.+||||||+|+.||+++|++++.
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 479999999999999999999999998874
No 54
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.28 E-value=2.5e-11 Score=112.63 Aligned_cols=184 Identities=11% Similarity=0.085 Sum_probs=100.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhh------hhhhhhhhhcCCCCCc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNEN------LKSYDEKTFCKDPKHF 141 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~------~~~~~~~~f~~dp~~~ 141 (395)
++.+|+|+|++||||||+++.|++++|..++..+...+.....+..++.+...||++. .+....+.+|.||+..
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~ 84 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAK 84 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHH
Confidence 4578999999999999999999999999887443222211111112334444444332 2334455566776533
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEE
Q psy6807 142 HTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIY 221 (395)
Q Consensus 142 ~~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIy 221 (395)
..+...+|-...+ +..+.+.. .....||+| .+.+++.|+- .....|.+|+
T Consensus 85 ~~Le~i~HP~V~~--~~~~~~~~--~~~~~vv~e---------ipLL~E~~~~-----------------~~~~~D~vi~ 134 (204)
T PRK14733 85 KWLEDYLHPVINK--EIKKQVKE--SDTVMTIVD---------IPLLGPYNFR-----------------HYDYLKKVIV 134 (204)
T ss_pred HHHHhhhhHHHHH--HHHHHHHh--cCCCeEEEE---------echhhhccCc-----------------hhhhCCEEEE
Confidence 2233333322211 11111111 123456777 2333333320 0013589999
Q ss_pred EECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCC-ChhHHHHHHHHh
Q psy6807 222 LDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGG-DPEVVVEDIERI 294 (395)
Q Consensus 222 Ld~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~-~~e~V~edIe~l 294 (395)
+.||.++..+|+.+|+.-.+ .+....+.. |.-..+..+.+++++ | |++ +.+++.+++..+
T Consensus 135 V~a~~e~ri~Rl~~Rd~~s~-------~~a~~ri~~---Q~~~eek~~~aD~VI-~--N~g~~~~~l~~~~~~~ 195 (204)
T PRK14733 135 IKADLETRIRRLMERDGKNR-------QQAVAFINL---QISDKEREKIADFVI-D--NTELTDQELESKLITT 195 (204)
T ss_pred EECCHHHHHHHHHHcCCCCH-------HHHHHHHHh---CCCHHHHHHhCCEEE-E--CcCCCHHHHHHHHHHH
Confidence 99999999999999863211 122223322 211222234578755 5 677 899888888763
No 55
>PRK08233 hypothetical protein; Provisional
Probab=99.28 E-value=1.3e-10 Score=104.60 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=51.9
Q ss_pred CCEEEEEECChHHHHHHHhhcCCcc--ccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 216 PHLVIYLDIPVSKVKENVKKRNNPW--EVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eRI~~Rgr~~--E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
+|++|||++|++++++|+.+|+... .........+|++...+.|.++..+. ...+ .+++| +..+++++.++|..
T Consensus 98 ~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~-~~vId--~~~~~e~i~~~i~~ 173 (182)
T PRK08233 98 IDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTV-KPNA-DIVLD--GALSVEEIINQIEE 173 (182)
T ss_pred cCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcC-ccCC-eEEEc--CCCCHHHHHHHHHH
Confidence 6899999999999999987775311 10000123577778888888766542 2234 45678 67899999999987
Q ss_pred h
Q psy6807 294 I 294 (395)
Q Consensus 294 l 294 (395)
.
T Consensus 174 ~ 174 (182)
T PRK08233 174 E 174 (182)
T ss_pred H
Confidence 4
No 56
>PRK06217 hypothetical protein; Validated
Probab=99.27 E-value=1.9e-10 Score=104.70 Aligned_cols=30 Identities=33% Similarity=0.422 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
+.|+|.|++||||||+|+.|++.+|.+++.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~ 31 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLD 31 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEE
Confidence 579999999999999999999999988773
No 57
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.27 E-value=5.8e-11 Score=110.39 Aligned_cols=179 Identities=17% Similarity=0.219 Sum_probs=92.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHHHH
Q psy6807 72 IVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIRML 151 (395)
Q Consensus 72 I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~~~ 151 (395)
|+|.|+|||||||+|+.||+++|+.++...++-......+.. +... . ..+...-. .-.-.....++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~---~~~~-----~-----~~~~~~g~-~vp~~~~~~l~ 67 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTP---LGKK-----A-----KEYMEKGE-LVPDEIVNQLV 67 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccH---HHHH-----H-----HHHHhCCC-CCCHHHHHHHH
Confidence 889999999999999999999999988532211100000000 0000 0 00111100 00001111111
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHHHH
Q psy6807 152 QLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKE 231 (395)
Q Consensus 152 ~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~~e 231 (395)
. +++.+....+.++|+|.++-+-. +...+.+... . .|+++|+|++|.+++.+
T Consensus 68 ~-------~~i~~~~~~~~~~ilDGfPrt~~---------------Qa~~l~~~~~----~--~~~~vi~L~~~~~~~~~ 119 (210)
T TIGR01351 68 K-------ERLTQNQDNENGFILDGFPRTLS---------------QAEALDALLK----E--KIDAVIELDVPDEELVE 119 (210)
T ss_pred H-------HHHhcCcccCCcEEEeCCCCCHH---------------HHHHHHHHhc----c--CCCEEEEEECCHHHHHH
Confidence 1 22222122367899998763311 1111111111 0 58999999999999999
Q ss_pred HHhhcCCcc----------------c----c-----CCCCCcHHHHHHHHHHHHhhccccc---CCCCcEEEEeCCCCCC
Q psy6807 232 NVKKRNNPW----------------E----V-----NSPIFNDKYLHEIEDLYKNNYLPQI---SDSSELLVYDWSDGGD 283 (395)
Q Consensus 232 RI~~Rgr~~----------------E----~-----~~~~v~~~yl~~l~~~Yk~~~l~~~---~~~~~vli~D~t~~~~ 283 (395)
|+..|.... + . ....=+.+-++.-...|++...+.. .+...++.+| +.++
T Consensus 120 Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id--~~~~ 197 (210)
T TIGR01351 120 RLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQID--GNGP 197 (210)
T ss_pred HHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEE--CCCC
Confidence 999985100 0 0 0000023333333334554333221 2234588888 7889
Q ss_pred hhHHHHHHHHh
Q psy6807 284 PEVVVEDIERI 294 (395)
Q Consensus 284 ~e~V~edIe~l 294 (395)
+++|.++|...
T Consensus 198 ~~~v~~~i~~~ 208 (210)
T TIGR01351 198 IDEVWKRILEA 208 (210)
T ss_pred HHHHHHHHHHh
Confidence 99999999763
No 58
>PRK14529 adenylate kinase; Provisional
Probab=99.27 E-value=2.6e-10 Score=107.23 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=28.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCCCC
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALPPA 101 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~e~ 101 (395)
.|+|.|+|||||||+++.||+++++.+++..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~g 32 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESG 32 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccc
Confidence 5899999999999999999999999988543
No 59
>PLN02674 adenylate kinase
Probab=99.27 E-value=6.1e-11 Score=112.85 Aligned_cols=184 Identities=15% Similarity=0.136 Sum_probs=97.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
..+.|+|.|+|||||||+|+.||+++|+.++...++-+..+..+.. +|.. ...+.+.-+ .-.-..-
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~-------~g~~------i~~~~~~G~-lvpd~iv 95 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP-------LGIK------AKEAMDKGE-LVSDDLV 95 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccCh-------hhHH------HHHHHHcCC-ccCHHHH
Confidence 3577999999999999999999999999998543221110000000 0000 011111111 0000111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChH
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVS 227 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e 227 (395)
..++.. ++.+ ...++++|+|.+|-+-. ....+.++... .-..|+.+|+|++|.+
T Consensus 96 ~~lv~~-------~l~~-~~~~~g~ilDGfPRt~~---------------Qa~~l~~~l~~---~~~~~d~vi~l~v~~~ 149 (244)
T PLN02674 96 VGIIDE-------AMKK-PSCQKGFILDGFPRTVV---------------QAQKLDEMLAK---QGAKIDKVLNFAIDDA 149 (244)
T ss_pred HHHHHH-------HHhC-cCcCCcEEEeCCCCCHH---------------HHHHHHHHHHh---cCCCCCEEEEEECCHH
Confidence 111211 2221 13467899998884321 11111112111 1126899999999999
Q ss_pred HHHHHHhhcC------Ccc--------------------ccCCCCCcHHHHHHHHHHHHhhccccc---CCCCcEEEEeC
Q psy6807 228 KVKENVKKRN------NPW--------------------EVNSPIFNDKYLHEIEDLYKNNYLPQI---SDSSELLVYDW 278 (395)
Q Consensus 228 ~~~eRI~~Rg------r~~--------------------E~~~~~v~~~yl~~l~~~Yk~~~l~~~---~~~~~vli~D~ 278 (395)
++.+|+..|. +.+ ... ..=+.+-++.--+.|++...|.+ .+...++.+|
T Consensus 150 ~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~~R-~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Id- 227 (244)
T PLN02674 150 ILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQR-KDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLH- 227 (244)
T ss_pred HHHHHHhccccccccCCccccccCCCcccCcccccCCccccC-CCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEE-
Confidence 9999999883 100 000 00012323333334554433322 2234578888
Q ss_pred CCCCChhHHHHHHHHh
Q psy6807 279 SDGGDPEVVVEDIERI 294 (395)
Q Consensus 279 t~~~~~e~V~edIe~l 294 (395)
+.+++++|.++|..+
T Consensus 228 -a~~~~~eV~~~i~~~ 242 (244)
T PLN02674 228 -AEKPPKEVTAEVQKA 242 (244)
T ss_pred -CCCCHHHHHHHHHHH
Confidence 888999999999764
No 60
>PRK01184 hypothetical protein; Provisional
Probab=99.27 E-value=1.5e-10 Score=105.12 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=45.7
Q ss_pred CCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 215 KPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 215 ~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
.+..+|+|++|++++.+|+.+|+++... .+.+.+.........+-.++....+++++ | |.++.+++.++|..+
T Consensus 103 ~~~~~i~v~~~~~~~~~Rl~~R~~~~d~----~~~~~~~~r~~~q~~~~~~~~~~~ad~vI-~--N~~~~~~l~~~v~~~ 175 (184)
T PRK01184 103 EDFILIAIHAPPEVRFERLKKRGRSDDP----KSWEELEERDERELSWGIGEVIALADYMI-V--NDSTLEEFRARVRKL 175 (184)
T ss_pred cccEEEEEECCHHHHHHHHHHcCCCCCh----hhHHHHHHHHHHHhccCHHHHHHhcCEEE-e--CCCCHHHHHHHHHHH
Confidence 3678999999999999999999865221 12222222222211111122223577766 5 677999999999875
Q ss_pred h
Q psy6807 295 D 295 (395)
Q Consensus 295 ~ 295 (395)
-
T Consensus 176 ~ 176 (184)
T PRK01184 176 L 176 (184)
T ss_pred H
Confidence 3
No 61
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.26 E-value=3e-11 Score=112.42 Aligned_cols=184 Identities=11% Similarity=0.157 Sum_probs=96.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhh-----------hhhhhhhhh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNEN-----------LKSYDEKTF 134 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~-----------~~~~~~~~f 134 (395)
+...+|+|+|++||||||+++.|++ +|...++.+.+.+.... .+.....+...+|.+. .+....+..
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 4568999999999999999999997 88888754422221111 1111112222222111 111222345
Q ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCC
Q psy6807 135 CKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTG-QGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPL 213 (395)
Q Consensus 135 ~~dp~~~~~~~~ql~~~~~R~~q~~~al~~~l~tG-~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l 213 (395)
|.+|.........++-... ..+...+......| ..||+|-- .+++.++ .
T Consensus 82 f~~~~~~~~l~~i~hp~i~--~~~~~~i~~~~~~~~~vvv~e~p---------LL~e~~~-------------------~ 131 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVF--AAFQRAVDRAARRGKRILVKEAA---------ILFESGG-------------------D 131 (208)
T ss_pred hCCHHHHHHHHHHHCHHHH--HHHHHHHHHHHhcCCCEEEEEee---------eeeecCc-------------------h
Confidence 6666422112222221111 11112222222344 34555521 2222221 0
Q ss_pred CCCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 214 FKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 214 ~~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
..+|.+|++++|.+++.+|+.+|++..+ .+..+++...+.+ ....+.+++++ + |.++.|++.++|..
T Consensus 132 ~~~d~ii~V~a~~e~~~~Rl~~R~~~s~-------e~~~~Ri~~q~~~---~~~~~~ad~vI-~--N~g~~e~l~~~i~~ 198 (208)
T PRK14731 132 AGLDFIVVVAADTELRLERAVQRGMGSR-------EEIRRRIAAQWPQ---EKLIERADYVI-Y--NNGTLDELKAQTEQ 198 (208)
T ss_pred hcCCeEEEEECCHHHHHHHHHHcCCCCH-------HHHHHHHHHcCCh---HHHHHhCCEEE-E--CCCCHHHHHHHHHH
Confidence 1469999999999999999999975321 2333444332211 11112467655 4 78899999999987
Q ss_pred h
Q psy6807 294 I 294 (395)
Q Consensus 294 l 294 (395)
+
T Consensus 199 ~ 199 (208)
T PRK14731 199 L 199 (208)
T ss_pred H
Confidence 6
No 62
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.26 E-value=1.7e-10 Score=110.00 Aligned_cols=164 Identities=17% Similarity=0.247 Sum_probs=92.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHHH
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIRM 150 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~~ 150 (395)
+|+++|.|||||||+|+.|++.++...+....++. ..++ ..+ .. +.+ .+. . .
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~------D~lr---~~~----------~~-~~~-----~~e--~-~ 52 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT------DLIR---ESF----------PV-WKE-----KYE--E-F 52 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc------HHHH---HHh----------HH-hhH-----HhH--H-H
Confidence 58999999999999999999998644332111110 0011 000 00 111 000 0 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHHH
Q psy6807 151 LQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVK 230 (395)
Q Consensus 151 ~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~~ 230 (395)
. | ......+...+..|..||+|...+.. .. ..++... ......+.++|||++|.++|.
T Consensus 53 ~--~-~~~~~~i~~~l~~~~~VI~D~~~~~~---------------~~---r~~l~~~-ak~~~~~~~~I~l~~p~e~~~ 110 (249)
T TIGR03574 53 I--R-DSTLYLIKTALKNKYSVIVDDTNYYN---------------SM---RRDLINI-AKEYNKNYIIIYLKAPLDTLL 110 (249)
T ss_pred H--H-HHHHHHHHHHHhCCCeEEEeccchHH---------------HH---HHHHHHH-HHhCCCCEEEEEecCCHHHHH
Confidence 1 1 01123445567788899999653211 00 0111111 112235789999999999999
Q ss_pred HHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccC--CCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 231 ENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQIS--DSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 231 eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~--~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
+|..+|+.. ++.+.++.+...|+. |... -.+..+++|++..-+.+++.+.|-..
T Consensus 111 ~Rn~~R~~~-------~~~~~i~~l~~r~e~---p~~~~~wd~~~~~vd~~~~~~~~ei~~~i~~~ 166 (249)
T TIGR03574 111 RRNIERGEK-------IPNEVIKDMYEKFDE---PGTKYSWDLPDLTIDTTKKIDYNEILEEILEI 166 (249)
T ss_pred HHHHhCCCC-------CCHHHHHHHHHhhCC---CCCCCCccCceEEecCCCCCCHHHHHHHHHHH
Confidence 999998753 245555555555543 2221 13477888965555778999988664
No 63
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.25 E-value=1.6e-10 Score=107.74 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPP 100 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e 100 (395)
+.|+|.|+|||||||+|+.||+++|..++..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 3599999999999999999999999988853
No 64
>PRK04040 adenylate kinase; Provisional
Probab=99.25 E-value=1.5e-10 Score=106.30 Aligned_cols=176 Identities=18% Similarity=0.210 Sum_probs=96.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh--ccccCCCCcccccccc----CCCccccchhhhhhhhhhhhhhhhhcCCCCCcc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADEL--DMIALPPANMDMFYKR----GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFH 142 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l--~~~~~~e~~~d~~~~~----~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~ 142 (395)
+++|+|+|+|||||||+++.|++++ +..++. .+..+.. .|.. . ....+..-+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~---~g~~~~~~a~~~g~~-~--------------~~d~~r~l~---- 59 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN---FGDVMLEVAKEEGLV-E--------------HRDEMRKLP---- 59 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe---cchHHHHHHHHcCCC-C--------------CHHHHhhCC----
Confidence 5799999999999999999999999 666652 2322211 1100 0 001111111
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEE
Q psy6807 143 TIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYL 222 (395)
Q Consensus 143 ~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyL 222 (395)
...|..+ .+ ...+.+.. +..+..||+|.... + .-..|++....... ...+ .|+.+|||
T Consensus 60 -~~~~~~~--~~--~a~~~i~~-~~~~~~~~~~~h~~---i----~~~~g~~~~~~~~~--------~~~l-~pd~ii~l 117 (188)
T PRK04040 60 -PEEQKEL--QR--EAAERIAE-MAGEGPVIVDTHAT---I----KTPAGYLPGLPEWV--------LEEL-NPDVIVLI 117 (188)
T ss_pred -hhhhHHH--HH--HHHHHHHH-hhcCCCEEEeeeee---e----ccCCCCcCCCCHHH--------Hhhc-CCCEEEEE
Confidence 1111110 00 11122222 23556689996420 0 00123333211111 1222 78999999
Q ss_pred ECChHHHHHHHh---hcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 223 DIPVSKVKENVK---KRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 223 d~p~e~~~eRI~---~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++||+++++|.. .|+|+.|.. ...++.......|..++.. ...+.+.++. +..+.+|+.+++|..+
T Consensus 118 ~a~p~~i~~Rrl~d~~R~R~~es~---e~I~~~~~~a~~~a~~~a~--~~g~~~~iI~-N~d~~~e~a~~~i~~i 186 (188)
T PRK04040 118 EADPDEILMRRLRDETRRRDVETE---EDIEEHQEMNRAAAMAYAV--LTGATVKIVE-NREGLLEEAAEEIVEV 186 (188)
T ss_pred eCCHHHHHHHHhcccccCCCCCCH---HHHHHHHHHHHHHHHHHHH--hcCCeEEEEE-CCCCCHHHHHHHHHHH
Confidence 999999999987 477877763 3467777777777554432 1133444443 2444489888888764
No 65
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.24 E-value=4.8e-11 Score=110.50 Aligned_cols=181 Identities=18% Similarity=0.142 Sum_probs=99.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhh-------hhhhhhhhhcCCCCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNEN-------LKSYDEKTFCKDPKH 140 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~-------~~~~~~~~f~~dp~~ 140 (395)
+++|+|+|.+||||||+++.+++ +|.+.+..+..-+.... .+..+..+...+|.+. .+....+.+|.||..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 57999999999999999999999 99999865443332222 2233333333333111 234445667777754
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEE
Q psy6807 141 FHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVI 220 (395)
Q Consensus 141 ~~~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvI 220 (395)
+.......+-+..... .........+ .+++| .+.+++.+... ..|.||
T Consensus 81 ~~~Le~i~hPli~~~~---~~~~~~~~~~-~~~~e---------iplL~e~~~~~-------------------~~d~Vi 128 (201)
T COG0237 81 RLKLEKILHPLIRAEI---KVVIDGARSP-YVVLE---------IPLLFEAGGEK-------------------YFDKVI 128 (201)
T ss_pred HHHHHHhhhHHHHHHH---HHHHHHhhCC-ceEEE---------chHHHhccccc-------------------cCCEEE
Confidence 3333332332221111 0111112222 55666 33444332111 268999
Q ss_pred EEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 221 YLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 221 yLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
+++||+++.++|+.+|+...+. -.+.... .|.-..+....+++++ | ++++++...++|.++.
T Consensus 129 ~V~a~~e~r~eRl~~R~~~~~e--------~~~~~~~--~Q~~~~ek~~~ad~vi-~--n~~~i~~l~~~i~~~~ 190 (201)
T COG0237 129 VVYAPPEIRLERLMKRDGLDEE--------DAEARLA--SQRDLEEKLALADVVI-D--NDGSIENLLEQIEKLL 190 (201)
T ss_pred EEECCHHHHHHHHHhcCCCCHH--------HHHHHHH--hcCCHHHHHhhcCChh-h--cCCCHHHHHHHHHHHH
Confidence 9999999999999999832211 1111111 1110111112356544 5 8889999888887754
No 66
>PHA03138 thymidine kinase; Provisional
Probab=99.24 E-value=1.9e-10 Score=113.19 Aligned_cols=174 Identities=15% Similarity=0.190 Sum_probs=100.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhc-----cccCCCCcccccccc-CCCc-cccchhhhhhhhhhhhhhhhhc-CCCCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELD-----MIALPPANMDMFYKR-GDFD-WRSLDAEWSNENLKSYDEKTFC-KDPKH 140 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~-----~~~~~e~~~d~~~~~-~g~d-~~~l~~~l~p~~~~~~~~~~f~-~dp~~ 140 (395)
...|.|+|+.|+||||+++.+.+.+. ..+++||. .++.. .|.+ +..+.. .......++.- .|++
T Consensus 12 ~~riYleG~~GvGKTT~~~~~l~~~~~~~~~vl~vpEPm--~yWr~v~~~d~l~~iY~-----~q~r~~~G~~S~~da~- 83 (340)
T PHA03138 12 ILRIYLDGAFGIGKTTAAEAFLHGFAINPNRIFFIGEPL--MYWRNLAGDDAICGIYG-----TQTRRKNGDISDEDAQ- 83 (340)
T ss_pred EEEEEEECCCCcCHHhHHHHHHHhhhcCCCceEEeeCch--HHHHHhccccHHHHHHH-----Hhhhhhcccccccchh-
Confidence 46799999999999999987766543 34677773 23333 3321 111100 00011111111 3433
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHh----------cC-CeEEE--eccCcch-HHHHHHHHhcCCCChhHHHHHHHHH
Q psy6807 141 FHTIAFQIRMLQLRFSVYVDALAHMLS----------TG-QGAIV--QRCPFSD-FIFIEAMDKCGYITKRHKDIYYEIT 206 (395)
Q Consensus 141 ~~~~~~ql~~~~~R~~q~~~al~~~l~----------tG-~~VIl--DRs~~Sd-~vf~~a~~~~g~i~~~~~~~y~~~~ 206 (395)
+..+.+|..|..-.... ...+...+. .+ ..+++ ||+++|. ++|-.++|..|.++...+-..
T Consensus 84 ~~~a~~Q~~f~tP~~~~-~~~~~~~l~~~~~~~~~~~~~~p~~ili~DRHp~SA~vCFP~ary~~G~ls~~~l~~L---- 158 (340)
T PHA03138 84 RLTAHFQGLFCSPHAIL-HAKILALMDQNPNDLALKFFKEPVAIFLSDRHPIASNICFPISRYLVGDMSPAALPGF---- 158 (340)
T ss_pred HHHHHHHHHhhhhHHHH-HHHHHHHhccccCccccCCCCCCeEEEEeccccchhhHHHHHHHHHcCCCCHHHHHHH----
Confidence 45666888763321111 011111111 11 24455 9999997 689999999999997765544
Q ss_pred HHhCCCC-CCCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHH
Q psy6807 207 RFTLPPL-FKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYK 260 (395)
Q Consensus 207 ~~~~~~l-~~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk 260 (395)
...++.. +.-++|||+-.++| ..+|+++|+|+.|. ++..++..+...|.
T Consensus 159 ~~~~p~~~~g~nLVv~~l~~~E-~~~RL~~R~R~gE~----~D~~~l~alrnvY~ 208 (340)
T PHA03138 159 LFALPAEPEGTNLIVCTVSLPN-HLSRISKRARPGEI----IDLPFILVLRNVYI 208 (340)
T ss_pred HHhcCCCCCCCcEEEEeCCcHH-HHHHHHhcCCCccc----cchHHHHHHHHHHH
Confidence 2223333 23367887775555 99999999999997 45566666666654
No 67
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.24 E-value=5.2e-11 Score=108.79 Aligned_cols=179 Identities=15% Similarity=0.144 Sum_probs=94.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhh-------hhhhhhhhhcCCCCCcc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNEN-------LKSYDEKTFCKDPKHFH 142 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~-------~~~~~~~~f~~dp~~~~ 142 (395)
+|+|+|.+||||||+++.|++..+..++..+.+-+.+.. .+..+..+...+|++. .+......+|.+|+...
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999999877888855433222222 2222333444443222 22233445567765321
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEE
Q psy6807 143 TIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYL 222 (395)
Q Consensus 143 ~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyL 222 (395)
.....++-... ....+.+......|..||++-. .+++.++ ....|.+|+|
T Consensus 81 ~le~ilhP~i~--~~i~~~i~~~~~~~~~vvi~~p---------ll~e~~~-------------------~~~~D~vv~V 130 (188)
T TIGR00152 81 WLNNLLHPLIR--EWMKKLLAQFQSKLAYVLLDVP---------LLFENKL-------------------RSLCDRVIVV 130 (188)
T ss_pred HHHHhhCHHHH--HHHHHHHHHhhcCCCEEEEEch---------HhhhCCc-------------------HHhCCEEEEE
Confidence 11111221111 1111222222223456777722 1211110 0136899999
Q ss_pred ECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHH
Q psy6807 223 DIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIE 292 (395)
Q Consensus 223 d~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe 292 (395)
++|.+++.+|+.+|+..-+ .+..+++... .........+++++ + |.++.+++..+++
T Consensus 131 ~~~~~~~~~Rl~~R~~~s~-------~~~~~r~~~q---~~~~~~~~~ad~vI-~--N~~~~e~l~~~~~ 187 (188)
T TIGR00152 131 DVSPQLQLERLMQRDNLTE-------EEVQKRLASQ---MDIEERLARADDVI-D--NSATLADLVKQLE 187 (188)
T ss_pred ECCHHHHHHHHHHcCCCCH-------HHHHHHHHhc---CCHHHHHHhCCEEE-E--CCCCHHHHHHHHh
Confidence 9999999999999973111 1222222221 11111123467755 5 7889999988875
No 68
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.22 E-value=1.2e-10 Score=103.74 Aligned_cols=30 Identities=40% Similarity=0.618 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
++|+|.|++||||||+|+.||+++|.+++.
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 479999999999999999999999998874
No 69
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.21 E-value=1.4e-10 Score=107.71 Aligned_cols=176 Identities=13% Similarity=0.152 Sum_probs=96.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcccc-CCCCcccccccc---CCCccccchhhhhhhh-hhhhhhhhhcCCCCCcc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIA-LPPANMDMFYKR---GDFDWRSLDAEWSNEN-LKSYDEKTFCKDPKHFH 142 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~-~~e~~~d~~~~~---~g~d~~~l~~~l~p~~-~~~~~~~~f~~dp~~~~ 142 (395)
++++|+|+|++||||||+++.|++. +..+ ++.......-.. .|.++.-+. ++. ......+.|..-.+
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~-~~~~~~~~~~ttr~~r~~e~~g~~y~fv~----~~~f~~~~~~~~~le~~~--- 83 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER-KLPFHFVVTATTRPKRPGEIDGVDYHFVT----PEEFREMISQNELLEWAE--- 83 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc-CCcccccccccCCCCCCCCCCCCeeeeCC----HHHHHHHHHcCCcEEEEE---
Confidence 5789999999999999999999865 3222 222222211010 222222111 111 01111122221110
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEE
Q psy6807 143 TIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYL 222 (395)
Q Consensus 143 ~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyL 222 (395)
.....|..-..++...++.|+.||++.+. .. ...+.+. .|++++++
T Consensus 84 -------~~g~~YGt~~~~i~~~~~~g~~vi~~~~~------~g---------------~~~l~~~------~pd~~~if 129 (206)
T PRK14738 84 -------VYGNYYGVPKAPVRQALASGRDVIVKVDV------QG---------------AASIKRL------VPEAVFIF 129 (206)
T ss_pred -------EcCceecCCHHHHHHHHHcCCcEEEEcCH------HH---------------HHHHHHh------CCCeEEEE
Confidence 00111111123455567789999998543 10 0111111 37877777
Q ss_pred ECC--hHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhhc
Q psy6807 223 DIP--VSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFD 297 (395)
Q Consensus 223 d~p--~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f~ 297 (395)
.+| .+++.+|+.+|+... ..++.+++...|.+.... ...+++++| +.+++|++.++|..+--+
T Consensus 130 ~~pps~e~l~~Rl~~R~~~~-------~~~~~~Rl~~~~~e~~~~---~~~~~~iId--~~~~~e~v~~~i~~~l~~ 194 (206)
T PRK14738 130 LAPPSMDELTRRLELRRTES-------PEELERRLATAPLELEQL---PEFDYVVVN--PEDRLDEAVAQIMAIISA 194 (206)
T ss_pred EeCCCHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHHhcc---cCCCEEEEC--CCCCHHHHHHHHHHHHHH
Confidence 765 457899999998532 246778888877654321 224788888 668999999999876544
No 70
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.21 E-value=4.4e-10 Score=102.25 Aligned_cols=173 Identities=23% Similarity=0.276 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQI 148 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql 148 (395)
+.|+|.|+|||||||+|+.||++++..+++ .++.+.. .... .++. .......+.+.+..| ....
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hls---tgd~~r~~~~~~-t~lg----~~~k~~i~~g~lv~d-------~i~~ 65 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLD---TGDILRAAIAER-TELG----EEIKKYIDKGELVPD-------EIVN 65 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEc---HhHHhHhhhccC-ChHH----HHHHHHHHcCCccch-------HHHH
Confidence 468999999999999999999999999984 3333333 1000 1111 111010111111111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHH
Q psy6807 149 RMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSK 228 (395)
Q Consensus 149 ~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~ 228 (395)
..+. ..+.+.-..+ ++|+|.+|-.- ..++++ ...+.. ...+++.++.++++.+.
T Consensus 66 ~~v~-------~rl~~~d~~~-~~I~dg~PR~~-~qa~~l--------------~r~l~~---~g~~~d~v~~~~~~~~~ 119 (178)
T COG0563 66 GLVK-------ERLDEADCKA-GFILDGFPRTL-CQARAL--------------KRLLKE---LGVRLDMVIELDVPEEL 119 (178)
T ss_pred HHHH-------HHHHhhcccC-eEEEeCCCCcH-HHHHHH--------------HHHHHH---cCCCcceEEeeeCCHHH
Confidence 1122 2222221223 89999877321 111111 111111 11478999999999999
Q ss_pred HHHHHhhcC-CccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 229 VKENVKKRN-NPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 229 ~~eRI~~Rg-r~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
+.+|+..|. |... +.+.++.-...|++...|.+.-++ +.+| +.+++++|.++|..
T Consensus 120 ~~~r~~~r~~r~dd------~~~~~~~R~~~y~~~~~pli~~y~--~~id--~~~~i~~v~~~i~~ 175 (178)
T COG0563 120 LLERLLGRRVREDD------NEETVKKRLKVYHEQTAPLIEYYS--VTID--GSGEIEEVLADILK 175 (178)
T ss_pred HHHHHhCccccccC------CHHHHHHHHHHHHhcccchhhhhe--eecc--CCCCHHHHHHHHHH
Confidence 999999886 3322 134455556667776666443223 5566 88999999999876
No 71
>PRK00625 shikimate kinase; Provisional
Probab=99.21 E-value=2.8e-10 Score=103.08 Aligned_cols=37 Identities=30% Similarity=0.283 Sum_probs=31.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR 109 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~ 109 (395)
+.|+|+|++||||||+++.||++++++++ ++|..+..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~i---d~D~~I~~ 37 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFF---DTDDLIVS 37 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEE---EhhHHHHH
Confidence 46999999999999999999999999998 55554433
No 72
>KOG3079|consensus
Probab=99.20 E-value=4.7e-10 Score=101.01 Aligned_cols=178 Identities=17% Similarity=0.278 Sum_probs=96.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIA 145 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~ 145 (395)
+++.+|.|.|+|||||.|++..+++++|..+++..++ +.+ ... +.+...........+-. -..
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdL---LR~E~~~----------~gse~g~~I~~~i~~G~---iVP 69 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDL---LRAEIAS----------AGSERGALIKEIIKNGD---LVP 69 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHH---HHHHHcc----------ccChHHHHHHHHHHcCC---cCc
Confidence 4678999999999999999999999999988854322 111 000 00000000111111110 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECC
Q psy6807 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIP 225 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p 225 (395)
..+ .. .-..+++.... ...+.++|.+|-+- .....+..... . .|++++|+||+
T Consensus 70 ~ei--~~---~LL~~am~~~~-~~~~fLIDGyPR~~---------------~q~~~fe~~i~----~--~~~fvl~fdc~ 122 (195)
T KOG3079|consen 70 VEI--TL---SLLEEAMRSSG-DSNGFLIDGYPRNV---------------DQLVEFERKIQ----G--DPDFVLFFDCP 122 (195)
T ss_pred HHH--HH---HHHHHHHHhcC-CCCeEEecCCCCCh---------------HHHHHHHHHhc----C--CCCEEEEEeCC
Confidence 000 00 01112332211 22238889776221 11111111111 1 58999999999
Q ss_pred hHHHHHHHhhcCCc--cccCCCCCcHHHHHHHHHHHHhhccccc---CCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 226 VSKVKENVKKRNNP--WEVNSPIFNDKYLHEIEDLYKNNYLPQI---SDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 226 ~e~~~eRI~~Rgr~--~E~~~~~v~~~yl~~l~~~Yk~~~l~~~---~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
.|+|.+|+..||.. .... +.+-++.-.+.|.+.-.|-+ .....++.+| +.++++.|.++++.
T Consensus 123 ee~~l~Rll~R~q~~~R~DD----n~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~--a~~~~d~Vf~~v~~ 189 (195)
T KOG3079|consen 123 EETMLKRLLHRGQSNSRSDD----NEESIKKRLETYNKSTLPVIEYYEKKGKLLKIN--AERSVDDVFEEVVT 189 (195)
T ss_pred HHHHHHHHHhhcccCCCCCC----chHHHHHHHHHHHHcchHHHHHHHccCcEEEec--CCCCHHHHHHHHHH
Confidence 99999999999854 1111 12223333334444433332 2345788888 89999999999976
No 73
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.20 E-value=2.7e-11 Score=110.45 Aligned_cols=136 Identities=18% Similarity=0.224 Sum_probs=77.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhh-------hhhhhhhhhcCCCCCc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNEN-------LKSYDEKTFCKDPKHF 141 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~-------~~~~~~~~f~~dp~~~ 141 (395)
++|+|+|++||||||+++.|++ +|.+.+..+...+.+.. .+..+..+...||+.. .+.......|.||+..
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5899999999999999999999 99999854433332222 2223334545554332 2444556667777532
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEE
Q psy6807 142 HTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIY 221 (395)
Q Consensus 142 ~~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIy 221 (395)
.....-++-+. .+.+............+|+| .+.+++.|+.. ..|.+|+
T Consensus 80 ~~L~~iihP~I---~~~~~~~~~~~~~~~~~v~e---------~pLL~E~~~~~-------------------~~D~vi~ 128 (180)
T PF01121_consen 80 KKLENIIHPLI---REEIEKFIKRNKSEKVVVVE---------IPLLFESGLEK-------------------LCDEVIV 128 (180)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHCHSTSEEEEE----------TTTTTTTGGG-------------------GSSEEEE
T ss_pred HHHHHHHhHHH---HHHHHHHHHhccCCCEEEEE---------cchhhhhhHhh-------------------hhceEEE
Confidence 22222233222 11111111112223677888 33444444321 3699999
Q ss_pred EECChHHHHHHHhhcC
Q psy6807 222 LDIPVSKVKENVKKRN 237 (395)
Q Consensus 222 Ld~p~e~~~eRI~~Rg 237 (395)
+.||.++..+|+.+|+
T Consensus 129 V~a~~e~ri~Rl~~R~ 144 (180)
T PF01121_consen 129 VYAPEEIRIKRLMERD 144 (180)
T ss_dssp EE--HHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHhhC
Confidence 9999999999999884
No 74
>PRK08356 hypothetical protein; Provisional
Probab=99.19 E-value=2e-09 Score=98.98 Aligned_cols=74 Identities=15% Similarity=0.240 Sum_probs=46.9
Q ss_pred CEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcc-cccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 217 HLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYL-PQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 217 dlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l-~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
..+|||++|++++.+|+.+|+...+... -+.+.+.++..+-...+. ....+.+++++. |.++.+++.++|..+-
T Consensus 116 ~~vi~l~~~~~~~~~Rl~~R~~~~~~~~--~~~e~~~~~~~~~~~l~~~~~~~~~aD~vI~---N~~~~e~~~~~i~~~~ 190 (195)
T PRK08356 116 GKVIYVEAKPEIRFERLRRRGAEKDKGI--KSFEDFLKFDEWEEKLYHTTKLKDKADFVIV---NEGTLEELRKKVEEIL 190 (195)
T ss_pred CEEEEEECCHHHHHHHHHhcCCcccccc--ccHHHHHHHHHHHHHhhhhhhHHHhCcEEEE---CCCCHHHHHHHHHHHH
Confidence 5899999999999999999986433210 123444444332111111 122245788774 4689999999998754
No 75
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.18 E-value=7.3e-11 Score=123.00 Aligned_cols=150 Identities=20% Similarity=0.251 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQI 148 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql 148 (395)
+.|+|+|++||||||+++.||+++|..++ +.|..+.+ .|..+.++.... +... |
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~i---d~D~~i~~~~g~~i~~i~~~~--------Ge~~----------f---- 55 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFI---DMDEEIERREGRSVRRIFEED--------GEEY----------F---- 55 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEE---ECcHHHHHHcCCCHHHHHHHh--------hhHH----------H----
Confidence 36999999999999999999999999998 55554444 555544332211 1111 1
Q ss_pred HHHHHHHHHHHHHHH----HHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEEC
Q psy6807 149 RMLQLRFSVYVDALA----HMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDI 224 (395)
Q Consensus 149 ~~~~~R~~q~~~al~----~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~ 224 (395)
..+-.+.+..+. ..+++|.++|++.. ..+.+ +.+.+|||++
T Consensus 56 ---r~~E~~~l~~l~~~~~~Vis~Gggvv~~~~------------------------~r~~l--------~~~~vI~L~a 100 (488)
T PRK13951 56 ---RLKEKELLRELVERDNVVVATGGGVVIDPE------------------------NRELL--------KKEKTLFLYA 100 (488)
T ss_pred ---HHHHHHHHHHHhhcCCEEEECCCccccChH------------------------HHHHH--------hcCeEEEEEC
Confidence 111111111111 13445556555521 00111 1246999999
Q ss_pred ChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHH
Q psy6807 225 PVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDI 291 (395)
Q Consensus 225 p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edI 291 (395)
|++++.+|+..|+||.... .. +.+.+.|++.- +.. ..+.++|. +..++++++++|
T Consensus 101 s~e~l~~Rl~~~~RPLl~~----~~---e~l~~L~~~R~-~lY---~~~~~IDt-~~~s~~e~~~~i 155 (488)
T PRK13951 101 PPEVLMERVTTENRPLLRE----GK---ERIREIWERRK-QFY---TEFRGIDT-SKLNEWETTALV 155 (488)
T ss_pred CHHHHHHHhccCCCCCccc----cH---HHHHHHHHHHH-HHH---hcccEEEC-CCCCHHHHHHHH
Confidence 9999999999888875432 11 23333443321 111 12346784 456677777776
No 76
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.18 E-value=3e-10 Score=103.33 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=26.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 72 IVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 72 I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
|+|.|+|||||||+|+.||+++|..++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 8999999999999999999999998884
No 77
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.17 E-value=4.6e-10 Score=99.95 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
+++.|+|.|++||||||+|+.||+++|..++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 46799999999999999999999999998883
No 78
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.16 E-value=1.3e-10 Score=100.48 Aligned_cols=121 Identities=26% Similarity=0.457 Sum_probs=72.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCc-ccHHHHH
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHF-HTIAFQI 148 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~-~~~~~ql 148 (395)
+|+|.|+|||||||+++.|++.++..+++ .|..... .+ .++... ......-
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~---~D~~~~~~~~------------------------~~~~~~~~~~~~~~ 53 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVIS---QDEIRRRLAG------------------------EDPPSPSDYIEAEE 53 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEE---HHHHHHHHCC------------------------SSSGCCCCCHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEe---HHHHHHHHcc------------------------cccccchhHHHHHH
Confidence 68999999999999999999999976663 2221111 11 111100 0111110
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHH
Q psy6807 149 RMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSK 228 (395)
Q Consensus 149 ~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~ 228 (395)
. . .....+.+...+..|..+|+|...++ ......|.++.... ..+..+|+|++|.++
T Consensus 54 ~-~---~~~~~~~~~~~l~~g~~~vvd~~~~~---------------~~~r~~~~~~~~~~----~~~~~~v~l~~~~~~ 110 (143)
T PF13671_consen 54 R-A---YQILNAAIRKALRNGNSVVVDNTNLS---------------REERARLRELARKH----GYPVRVVYLDAPEET 110 (143)
T ss_dssp H-H---HHHHHHHHHHHHHTT-EEEEESS--S---------------HHHHHHHHHHHHHC----TEEEEEEEECHHHHH
T ss_pred H-H---HHHHHHHHHHHHHcCCCceeccCcCC---------------HHHHHHHHHHHHHc----CCeEEEEEEECCHHH
Confidence 0 0 11122344566789999999965432 23344555554432 235789999999999
Q ss_pred HHHHHhhcCCccc
Q psy6807 229 VKENVKKRNNPWE 241 (395)
Q Consensus 229 ~~eRI~~Rgr~~E 241 (395)
+.+|+.+|++..+
T Consensus 111 ~~~R~~~R~~~~~ 123 (143)
T PF13671_consen 111 LRERLAQRNREGD 123 (143)
T ss_dssp HHHHHHTTHCCCT
T ss_pred HHHHHHhcCCccc
Confidence 9999999987654
No 79
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.15 E-value=2.2e-09 Score=96.87 Aligned_cols=170 Identities=15% Similarity=0.104 Sum_probs=87.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhh-hcCCCCCcccHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKT-FCKDPKHFHTIAFQ 147 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~-f~~dp~~~~~~~~q 147 (395)
+++|++.|++||||||+|+.|++.++..++.- +.|.++.. +...+ +.......... +...|+ ..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~-~~D~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~---~~--- 66 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHF-GVDSFIEA-------LPLKC-QDAEGGIEFDGDGGVSPG---PE--- 66 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCcccc-CccHHHHh-------cChhh-cccccccccCccCCcccc---hH---
Confidence 57999999999999999999999987655421 23322111 00000 00000000000 001111 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChH
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVS 227 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e 227 (395)
....+......+..++..|..||+|-...+. . .+.+..... ...+-..|+|+||.+
T Consensus 67 ---~~~~y~~~~~~~~~~l~~G~~VIvD~~~~~~--------------~----~~r~~~~~~---~~~~~~~v~l~~~~~ 122 (175)
T cd00227 67 ---FRLLEGAWYEAVAAMARAGANVIADDVFLGR--------------A----ALQDCWRSF---VGLDVLWVGVRCPGE 122 (175)
T ss_pred ---HHHHHHHHHHHHHHHHhCCCcEEEeeeccCC--------------H----HHHHHHHHh---cCCCEEEEEEECCHH
Confidence 0011122223345567899999999543110 0 011111111 123568999999999
Q ss_pred HHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 228 KVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 228 ~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
++.+|+.+|++.. ...... .+.....+ ....+++| |...+++++++.|-.
T Consensus 123 ~l~~R~~~R~~~~--------~~~~~~---~~~~~~~~----~~~dl~iD-ts~~s~~e~a~~i~~ 172 (175)
T cd00227 123 VAEGRETARGDRV--------PGQARK---QARVVHAG----VEYDLEVD-TTHKTPIECARAIAA 172 (175)
T ss_pred HHHHHHHhcCCcc--------chHHHH---HHHHhcCC----CcceEEEE-CCCCCHHHHHHHHHH
Confidence 9999999998531 112111 12211111 12356888 345688888888754
No 80
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.15 E-value=1.2e-09 Score=107.62 Aligned_cols=166 Identities=13% Similarity=0.158 Sum_probs=92.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIA 145 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~ 145 (395)
.....|+|+|++||||||+++.||++||.+++ +.|..+.. .|..+.++.... +.+. |
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i---d~D~~i~~~~G~~i~ei~~~~--------G~~~----------f- 188 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFV---ELNREIEREAGLSVSEIFALY--------GQEG----------Y- 188 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE---eHHHHHHHHhCCCHHHHHHHH--------CHHH----------H-
Confidence 45679999999999999999999999999998 45554444 555444332211 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECC
Q psy6807 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIP 225 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p 225 (395)
...- ...+..++.....+|+.+.. ..+ ..+..+. .+ ....++|||++|
T Consensus 189 ------r~~e---~~~l~~ll~~~~~~VI~~Gg--g~v----------~~~~~~~---~l--------~~~~~~V~L~a~ 236 (309)
T PRK08154 189 ------RRLE---RRALERLIAEHEEMVLATGG--GIV----------SEPATFD---LL--------LSHCYTVWLKAS 236 (309)
T ss_pred ------HHHH---HHHHHHHHhhCCCEEEECCC--chh----------CCHHHHH---HH--------HhCCEEEEEECC
Confidence 0000 11222223333334444321 000 0001111 11 124689999999
Q ss_pred hHHHHHHHhhcC--CccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 226 VSKVKENVKKRN--NPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 226 ~e~~~eRI~~Rg--r~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
++++.+|+.+|+ ++.... + -..+.++.+......+|. .+++ ++| ++..+++++++.|..+-
T Consensus 237 ~e~~~~Rl~~r~~~rp~~~~-~-~~~e~i~~~~~~R~~~y~-----~ad~-~I~-t~~~s~ee~~~~I~~~l 299 (309)
T PRK08154 237 PEEHMARVRAQGDLRPMADN-R-EAMEDLRRILASREPLYA-----RADA-VVD-TSGLTVAQSLARLRELV 299 (309)
T ss_pred HHHHHHHHhcCCCCCCCCCC-C-ChHHHHHHHHHHHHHHHH-----hCCE-EEE-CCCCCHHHHHHHHHHHH
Confidence 999999999886 332211 0 123444444444444332 3566 456 35569999999987644
No 81
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.14 E-value=1e-09 Score=96.06 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=26.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
.|+|+|++||||||+|+.||+.+|..++.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~ 29 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVD 29 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 38999999999999999999999998884
No 82
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.14 E-value=8.1e-10 Score=99.71 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=44.7
Q ss_pred CCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 216 PHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
..++|||++|.+++.+|+..|+++.+ ....+.+.. +.. +. . ..++++++| +++++++++++|..+
T Consensus 111 ~~~~i~l~~~~~~~~~Rl~~R~~~~~-------~~~~~rl~~-~~~-~~--~-~~~~~~vi~--~~~~~ee~~~~i~~~ 175 (179)
T TIGR02322 111 NLLVVNITASPDVLAQRLAARGRESR-------EEIEERLAR-SAR-FA--A-APADVTTID--NSGSLEVAGETLLRL 175 (179)
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCCH-------HHHHHHHHH-Hhh-cc--c-ccCCEEEEe--CCCCHHHHHHHHHHH
Confidence 35899999999999999999987532 223333322 111 11 1 245777777 678999999999874
No 83
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.14 E-value=2.8e-10 Score=105.86 Aligned_cols=184 Identities=18% Similarity=0.266 Sum_probs=103.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
+..+|.|.|++||||||+|+.|.+.++...+...+.|++|.+ ...... . ....-|+.|+ ++.+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~---~----------~~~~n~d~p~---A~D~ 70 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFE---E----------RNKINYDHPE---AFDL 70 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHh---h----------cCCcCccChh---hhcH
Confidence 458999999999999999999999999765444567777765 211111 0 0112234443 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHh--cCCC-------ChhHHHHHHHHHHHhCCCCCCCC
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDK--CGYI-------TKRHKDIYYEITRFTLPPLFKPH 217 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~--~g~i-------~~~~~~~y~~~~~~~~~~l~~Pd 217 (395)
.+ +.. .| +.|..|+.|.+--+ || ....+. .-.+ -++.+-.+.+.... ..|
T Consensus 71 dL--l~~-------~L-~~L~~g~~v~~P~y---d~--~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~------~~d 129 (218)
T COG0572 71 DL--LIE-------HL-KDLKQGKPVDLPVY---DY--KTHTREPETIKVEPNDVVIVEGILLLYDERLRD------LMD 129 (218)
T ss_pred HH--HHH-------HH-HHHHcCCccccccc---ch--hcccccCCccccCCCcEEEEecccccccHHHHh------hcC
Confidence 22 111 11 12334555432211 11 110000 0000 01112222222221 358
Q ss_pred EEEEEECChHHHHHH-----HhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCC-CCCChhHHHHHH
Q psy6807 218 LVIYLDIPVSKVKEN-----VKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWS-DGGDPEVVVEDI 291 (395)
Q Consensus 218 lvIyLd~p~e~~~eR-----I~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t-~~~~~e~V~edI 291 (395)
+.|||++|.++++.| +++||+..|. +-.+|...+...|+++..| ..+.+++++--.. +.-.+..+...|
T Consensus 130 ~kIfvdtd~D~RliRri~RD~~~rg~~~e~----vi~qy~~~vkp~~~~fIep-tk~~ADiiip~~~~n~vav~~l~~~I 204 (218)
T COG0572 130 LKIFVDTDADVRLIRRIKRDVQERGRDLES----VIEQYVKTVRPMYEQFIEP-TKKYADIIIPSGGKNEVAVDLLQAKI 204 (218)
T ss_pred EEEEEeCCccHHHHHHHHHHHHHhCCCHHH----HHHHHHHhhChhhhhccCc-ccccceEEeecCCcceeehhHHHHHH
Confidence 999999999999877 4578888886 4578888999999998776 4568898774311 122444455555
Q ss_pred HH
Q psy6807 292 ER 293 (395)
Q Consensus 292 e~ 293 (395)
..
T Consensus 205 ~~ 206 (218)
T COG0572 205 AS 206 (218)
T ss_pred HH
Confidence 44
No 84
>PLN02199 shikimate kinase
Probab=99.14 E-value=1.6e-10 Score=112.15 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=36.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc--CCCccccch
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR--GDFDWRSLD 118 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~--~g~d~~~l~ 118 (395)
+++.|+|+|++||||||+++.||+.+|.+++ +.|..+.+ .|..+.+++
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fI---DtD~lIe~~~~G~sI~eIf 150 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFF---DCDTLIEQAMNGTSVAEIF 150 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEE---ehHHHHHHHhcCCCHHHHH
Confidence 4678999999999999999999999999998 44543433 244444443
No 85
>PLN02459 probable adenylate kinase
Probab=99.13 E-value=8.6e-10 Score=105.72 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPP 100 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e 100 (395)
.+.|+|.|+|||||||+|+.||+.+|+.++..
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~ 60 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIAT 60 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCcEEeC
Confidence 35688899999999999999999999998853
No 86
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.13 E-value=6e-10 Score=103.29 Aligned_cols=74 Identities=14% Similarity=0.244 Sum_probs=51.4
Q ss_pred CCEEEEEECChHHHHHHHhhcC-----CccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEe-CCCCCChhHHHH
Q psy6807 216 PHLVIYLDIPVSKVKENVKKRN-----NPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYD-WSDGGDPEVVVE 289 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eRI~~Rg-----r~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D-~t~~~~~e~V~e 289 (395)
.|++|||++|.+++++|..+|. ...|. +...|...+...|.++..+ .+..+++++-. .++.++.+.+.+
T Consensus 126 ~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~----~~~~~~~~~~~~~~~~i~~-~~~~AD~vI~~~~~~~~~~~~l~~ 200 (209)
T PRK05480 126 MDIKIFVDTPLDIRLIRRLKRDVNERGRSLES----VINQYLSTVRPMHLQFIEP-SKRYADIIIPEGGKNRVAIDILKA 200 (209)
T ss_pred hceeEEEeCChhHHHHHHHhhcchhcCCCHHH----HHHHHHHhhhhhHHhhccH-hhcceeEEecCCCcchHHHHHHHH
Confidence 5899999999999999987775 33332 2345666667777776554 34567887642 124558899999
Q ss_pred HHHHh
Q psy6807 290 DIERI 294 (395)
Q Consensus 290 dIe~l 294 (395)
+|+.+
T Consensus 201 ~i~~~ 205 (209)
T PRK05480 201 KIRQL 205 (209)
T ss_pred HHHHH
Confidence 88864
No 87
>PRK08118 topology modulation protein; Reviewed
Probab=99.13 E-value=4.5e-10 Score=101.07 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+.|+|.|++||||||+|+.|++.++.+++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~ 30 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVH 30 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCce
Confidence 57999999999999999999999999887
No 88
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.13 E-value=2.8e-10 Score=115.79 Aligned_cols=178 Identities=17% Similarity=0.185 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhh-------hhhhhhhhhcCCCCCc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNEN-------LKSYDEKTFCKDPKHF 141 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~-------~~~~~~~~f~~dp~~~ 141 (395)
+.|+|+|++||||||+++.|++ +|..+++.+.+...+.. .+..+..+...+|++. .+....+..|.|++..
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999998 89998865544333222 2223444555554331 2344455567776532
Q ss_pred ccHHHHHHHH-HHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEE
Q psy6807 142 HTIAFQIRML-QLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVI 220 (395)
Q Consensus 142 ~~~~~ql~~~-~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvI 220 (395)
......++-. ..+..+.+ .. ..++.||+.-.+ .+++.++- ...|.+|
T Consensus 81 ~~le~i~hP~I~~~i~~~i----~~-~~~~~vvv~eip--------LL~E~~~~-------------------~~~D~iI 128 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELI----AA-APEDAVVVEDIP--------LLVESGMA-------------------PLFHLVV 128 (395)
T ss_pred HHHHHhhhHHHHHHHHHHH----Hh-cCCCCEEEEEee--------eeecCCch-------------------hhCCEEE
Confidence 2222222211 11221111 11 123444443211 12221210 1358999
Q ss_pred EEECChHHHHHHHhh-cCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 221 YLDIPVSKVKENVKK-RNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 221 yLd~p~e~~~eRI~~-Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
||++|.+++.+|+.+ ||...+. ....+.. +.......+.+++++ | ++++.+++..+|..+
T Consensus 129 ~V~ap~e~ri~Rl~~rRg~s~~~--------a~~ri~~---Q~~~e~k~~~AD~vI-d--N~~s~e~l~~~v~~~ 189 (395)
T PRK03333 129 VVDADVEVRVRRLVEQRGMAEAD--------ARARIAA---QASDEQRRAVADVWL-D--NSGTPDELVEAVRAL 189 (395)
T ss_pred EEECCHHHHHHHHHhcCCCCHHH--------HHHHHHh---cCChHHHHHhCCEEE-E--CCCCHHHHHHHHHHH
Confidence 999999999999988 4543322 1112221 111111123456654 6 778899988888764
No 89
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.12 E-value=3.5e-10 Score=102.69 Aligned_cols=134 Identities=17% Similarity=0.158 Sum_probs=72.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhh-------hhhhhhhhhcCCCCCcc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNEN-------LKSYDEKTFCKDPKHFH 142 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~-------~~~~~~~~f~~dp~~~~ 142 (395)
+|+|+|++||||||+++.|++ +|..++..+.+-+.... .+.....+...+|... .+....+.+|.+|+...
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 589999999999999999999 89888754332222212 2222223333332111 22333445566654222
Q ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEE
Q psy6807 143 TIAFQIRMLQ-LRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIY 221 (395)
Q Consensus 143 ~~~~ql~~~~-~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIy 221 (395)
.....++-+. .++.+. + ........+|+|- ..+++.++- ...|.+|+
T Consensus 80 ~l~~i~hp~i~~~~~~~---~-~~~~~~~~vive~---------plL~e~~~~-------------------~~~D~vv~ 127 (179)
T cd02022 80 KLEAITHPLIRKEIEEQ---L-AEARKEKVVVLDI---------PLLFETGLE-------------------KLVDRVIV 127 (179)
T ss_pred HHHHHHHHHHHHHHHHH---H-HHccCCCEEEEEe---------hHhhcCCcH-------------------HhCCeEEE
Confidence 2222222111 111111 1 1111224667772 223332210 13689999
Q ss_pred EECChHHHHHHHhhcC
Q psy6807 222 LDIPVSKVKENVKKRN 237 (395)
Q Consensus 222 Ld~p~e~~~eRI~~Rg 237 (395)
+++|.++..+|+.+|+
T Consensus 128 V~a~~~~ri~Rl~~Rd 143 (179)
T cd02022 128 VDAPPEIQIERLMKRD 143 (179)
T ss_pred EECCHHHHHHHHHHcC
Confidence 9999999999999996
No 90
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.11 E-value=9.5e-10 Score=116.26 Aligned_cols=161 Identities=19% Similarity=0.230 Sum_probs=92.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
...|++.|++||||||+++.||+.||++++ +.|..+.+ .|.++.+++... +.+.| . ..
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fi---D~D~~ie~~~g~si~eif~~~--------Ge~~F-R---------~~ 64 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFA---DADVEIEREIGMSIPSYFEEY--------GEPAF-R---------EV 64 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCCCEE---EchHHHHHHHCcCHHHHHHHH--------HHHHH-H---------HH
Confidence 468999999999999999999999999999 66766666 887777665433 11222 1 00
Q ss_pred HHHHHHHHHHHHHHH----HHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEE
Q psy6807 148 IRMLQLRFSVYVDAL----AHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLD 223 (395)
Q Consensus 148 l~~~~~R~~q~~~al----~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd 223 (395)
. .+.+..+ ...+++|.|++++. .......++.+ ....+|||+
T Consensus 65 E-------~~~l~~~~~~~~~VIs~GGG~v~~~--------------------~n~~~L~~~~~-------~~g~vv~L~ 110 (542)
T PRK14021 65 E-------ADVVADMLEDFDGIFSLGGGAPMTP--------------------STQHALASYIA-------HGGRVVYLD 110 (542)
T ss_pred H-------HHHHHHHHhcCCeEEECCCchhCCH--------------------HHHHHHHHHHh-------cCCEEEEEE
Confidence 0 0111111 01234555554431 11111111111 235899999
Q ss_pred CChHHHHHHHhhcC-CccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 224 IPVSKVKENVKKRN-NPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 224 ~p~e~~~eRI~~Rg-r~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
+|++++.+|+..++ ||.-.. -+ .+.+.+.|++. .+...+.+++.+ | +...+++++++.|.+
T Consensus 111 ~~~~~l~~Rl~~~~~RPll~~---~~---~~~~~~l~~~R-~~~Y~~~Ad~~i-~-~~~~~~~~~~~~i~~ 172 (542)
T PRK14021 111 ADPKEAMERANRGGGRPMLNG---DA---NKRWKKLFKQR-DPVFRQVANVHV-H-TRGLTPQAAAKKLID 172 (542)
T ss_pred CCHHHHHHHHhCCCCCCCCCC---Cc---HHHHHHHHHHH-HHHHHhhCCEEE-E-CCCCCHHHHHHHHHH
Confidence 99999999997653 554321 01 13344444432 112223356644 5 456788888888765
No 91
>PLN02842 nucleotide kinase
Probab=99.08 E-value=1.9e-09 Score=111.71 Aligned_cols=230 Identities=20% Similarity=0.239 Sum_probs=117.9
Q ss_pred EEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHHHHHH
Q psy6807 74 VEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIRMLQL 153 (395)
Q Consensus 74 i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~~~~~ 153 (395)
|+|+|||||||+|+.||++++..++...++-...+..+..+ ... ...+..+-+ ..+-.....++.+
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~i---G~~----------Ire~l~~G~-lvPdeiv~~ll~d 67 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDI---GKR----------AKEFMNSGR-LVPDEIVIAMVTG 67 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHH---HHH----------HHHHHhCCC-CCcHHHHHHHHHH
Confidence 78999999999999999999998875321111000011000 000 112222111 0111222223333
Q ss_pred HHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHHHHHH
Q psy6807 154 RFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENV 233 (395)
Q Consensus 154 R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~~eRI 233 (395)
|+ .+.....+++|+|+++.+-.. +. .+.. ....||++|+||+|++++++|+
T Consensus 68 rl-------~~~~~~~~G~ILDGfPRt~~Q-a~-----------------~Le~----~~~~PDlVI~LDvpdevlleRl 118 (505)
T PLN02842 68 RL-------SREDAKEKGWLLDGYPRSFAQ-AQ-----------------SLEK----LKIRPDIFILLDVPDEILIDRC 118 (505)
T ss_pred HH-------hCccccCCcEEEeCCCCcHHH-HH-----------------HHHh----cCCCCCEEEEEeCCHHHHHHHH
Confidence 32 222123456888988855211 11 1111 1246999999999999999999
Q ss_pred hhcCCcc-------------cc--------CCCCCcHHHHHHHHHHHHhhcccccCCC-CcEEEEeCCCCCChhHHHHHH
Q psy6807 234 KKRNNPW-------------EV--------NSPIFNDKYLHEIEDLYKNNYLPQISDS-SELLVYDWSDGGDPEVVVEDI 291 (395)
Q Consensus 234 ~~Rgr~~-------------E~--------~~~~v~~~yl~~l~~~Yk~~~l~~~~~~-~~vli~D~t~~~~~e~V~edI 291 (395)
.+|.... +. ....=+.+-+++--+.|++...|....+ ..++.+| +.+++++|.++|
T Consensus 119 ~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~rl~~ID--Asqs~EeVfeeI 196 (505)
T PLN02842 119 VGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSDIMVKID--GNRPKEVVFEEI 196 (505)
T ss_pred hccccccccCCccccccCCCCccccccccccCCCCCHHHHHHHHHHHHHHhhhHHHhcCcEEEEEE--CCCCHHHHHHHH
Confidence 8874110 00 0000012222222234666554433322 3477788 788999999999
Q ss_pred HHhhhccc---------cccccccccccc------cchhHHHHHhhhhhccchhHhhhhhc------cCCCCCCceeec
Q psy6807 292 ERIDFDHY---------DHFSNKMREWRQ------LTTKEWNNLRMLYADEKSDLMTAFNT------VERYDCPELAYT 349 (395)
Q Consensus 292 e~l~f~~~---------~~~~~~~~~w~~------~~~~~~~~~r~~~~~~~~~~~~~~~~------~~~~~~~e~~~~ 349 (395)
..+--... ..+..+-..|+- +-+.+=.-++.+|.|.+.....+.+. |.. .+|||-..
T Consensus 197 ~~iL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~g~~r~~~~~-~~pel~~~ 274 (505)
T PLN02842 197 SSLLSQIQKDATKMIKTKKASPVQDKWRGIPTRLNNIPHSREIRAYFYDDVLQATQRAVNDGRTRLKVEI-NIPELNPE 274 (505)
T ss_pred HHHHHHHHhhhhhhcccccccchhhhhccCchhhcCCCChHHHHHHHHHHHHHHHHHHHhCCcceEEEEE-ecCccccc
Confidence 76443211 112233444532 11222233466777766666666542 222 37888775
No 92
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.08 E-value=2.3e-09 Score=104.59 Aligned_cols=155 Identities=14% Similarity=0.186 Sum_probs=84.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-ccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhh-hcCCCCCcccHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADEL-DMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKT-FCKDPKHFHTIAF 146 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l-~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~-f~~dp~~~~~~~~ 146 (395)
+++|++.|+|||||||+|+.|++++ +..++..+.....+ .+.. + ... .+.. . .
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~--~~~~---------~-------~~~~~~~~-~------~ 56 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSL--FGHG---------E-------WGEYKFTK-E------K 56 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHh--cCCC---------c-------ccccccCh-H------H
Confidence 4789999999999999999999999 66666332111000 0000 0 000 0100 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
+.... . ...+.+...+..|.+||+|.+..+. .....+.++.... ...-.+|||++|.
T Consensus 57 ~~~~~--~--~~~~~~~~~l~~g~~vIid~~~~~~---------------~~~~~~~~la~~~----~~~~~~v~l~~~~ 113 (300)
T PHA02530 57 EDLVT--K--AQEAAALAALKSGKSVIISDTNLNP---------------ERRRKWKELAKEL----GAEFEEKVFDVPV 113 (300)
T ss_pred HHHHH--H--HHHHHHHHHHHcCCeEEEeCCCCCH---------------HHHHHHHHHHHHc----CCeEEEEEeCCCH
Confidence 00000 0 1112334456789999999766432 2222333333221 1223479999999
Q ss_pred HHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhc---ccccC---CCCcEEEEe
Q psy6807 227 SKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNY---LPQIS---DSSELLVYD 277 (395)
Q Consensus 227 e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~---l~~~~---~~~~vli~D 277 (395)
+++.+|+.+|++.. ++.+-++.+.+.++++- .|.+. ....++++|
T Consensus 114 e~~~~R~~~R~~~~------~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D 164 (300)
T PHA02530 114 EELVKRNRKRGERA------VPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFD 164 (300)
T ss_pred HHHHHHHHccCcCC------CCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEE
Confidence 99999999996432 45566665555555432 22221 123577777
No 93
>PHA03134 thymidine kinase; Provisional
Probab=99.06 E-value=1.7e-09 Score=106.35 Aligned_cols=176 Identities=14% Similarity=0.182 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh--c--cccCCCCcccccccc-CCC-ccccchhhhhhhhhhhhhhhhhcCCCCCccc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADEL--D--MIALPPANMDMFYKR-GDF-DWRSLDAEWSNENLKSYDEKTFCKDPKHFHT 143 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l--~--~~~~~e~~~d~~~~~-~g~-d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~ 143 (395)
-.|.|+|+.|.||||.++.|++.- + .-+++|| -.++.. .+. .+..+... ...+..++.-......-.
T Consensus 14 ~rvYlDG~~GvGKTT~~~~l~~~~~~~~~vl~~pEP--M~YWr~~f~~d~i~~Iy~~-----q~r~~~G~~s~~~aa~~~ 86 (340)
T PHA03134 14 VRIYLDGAYGIGKSTTGRVMASAASGGGPTLYFPEP--MAYWRTLFETDVVSGIYDA-----QNRKQQGSLAAEDAAGIT 86 (340)
T ss_pred EEEEEeCCCcCCHHHHHHHHHHhccCCCceEEecCc--HHHHHHHhhhhHHHHHHHH-----HhHHhccCcchhHHHHHH
Confidence 468999999999999999998742 2 4667777 333333 221 22222110 011111111100000111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------C---CeEEEeccCcchH-HHHHHHHhcCCCChhHHHHHHHHHHHhCCCC
Q psy6807 144 IAFQIRMLQLRFSVYVDALAHMLST------G---QGAIVQRCPFSDF-IFIEAMDKCGYITKRHKDIYYEITRFTLPPL 213 (395)
Q Consensus 144 ~~~ql~~~~~R~~q~~~al~~~l~t------G---~~VIlDRs~~Sd~-vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l 213 (395)
...|..|..-. ......+...+.. + ..+|+||++.|.. ||-.+++..|.++...+.. +.. .+..-
T Consensus 87 a~~Q~~fatP~-~~~~~~~~~~~~~~~~~~~~~pd~~vI~DRHPlsA~vcFP~ar~~~G~ls~~~~~~---l~~-~~p~~ 161 (340)
T PHA03134 87 AHYQARFATPY-LILHDRLSTLFGPPSLARGGRPDVTLVFDRHPVASCVCFPLARYLLGDMSACALLA---LAA-TLPRE 161 (340)
T ss_pred HHHHHHhcChH-HHHHHHHHHhcCCCCCCCCCCCCeeeeeccCCCCccccchHHHHhcCCCCHHHHHH---HHH-hCCCC
Confidence 23555543321 1111122322221 2 4579999999986 7999999999999765421 111 11111
Q ss_pred CCC-CEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhh
Q psy6807 214 FKP-HLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNN 262 (395)
Q Consensus 214 ~~P-dlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~ 262 (395)
.| +.+||++.++++..+|+++|+|+.|. ++.+|+..++..|.-.
T Consensus 162 -~pG~niVl~~l~~~e~~~Rl~~R~R~gE~----id~~yL~~l~n~Y~~l 206 (340)
T PHA03134 162 -PPGGNLVVTTLNPDEHLRRLRARARIGEQ----IDAKLIAALRNVYAML 206 (340)
T ss_pred -CCCCeEEEEeCCHHHHHHHHHHcCCCccc----cCHHHHHHHHHHHHHH
Confidence 24 79999999999999999999999996 7899999999999753
No 94
>PRK14526 adenylate kinase; Provisional
Probab=99.06 E-value=4.4e-09 Score=98.30 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=27.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCCC
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALPP 100 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~e 100 (395)
.|+|.|+|||||||+++.||+.++..++..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~ 31 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIST 31 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeec
Confidence 488999999999999999999999988743
No 95
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.05 E-value=7.6e-09 Score=90.57 Aligned_cols=29 Identities=41% Similarity=0.469 Sum_probs=26.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
+|+|.|++||||||+|+.|++.++..++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 58999999999999999999999887774
No 96
>PHA03135 thymidine kinase; Provisional
Probab=99.05 E-value=1.3e-09 Score=107.38 Aligned_cols=178 Identities=16% Similarity=0.148 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh----ccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADEL----DMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTI 144 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l----~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~ 144 (395)
..|.|+|+.|+||||+++.|++.. +..+++||. .++.. ....+..+..- ....+.-.+..++.++ .-.
T Consensus 11 ~rIYlDG~~GvGKTT~~~~l~~~~~~~~~vl~vpEPM--~YWr~~f~d~i~~Iy~t--q~r~~~G~ls~~~as~---~~~ 83 (343)
T PHA03135 11 IRVYLDGPFGIGKTSMLNEMPDHSPDGVPVLKVFEPM--KYWRCYFTDLVVAVNDT--PERRRRGELSLFQSSM---IVA 83 (343)
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCCCCceEEecCcH--HHHHHHHHHHHHHHHHH--HhhhhcCCcchhhccH---HHH
Confidence 578999999999999999999853 256678873 22222 11111111000 0000000011111121 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----h----cCCeEEEeccCcchH-HHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCC
Q psy6807 145 AFQIRMLQLRFSVYVDALAHML----S----TGQGAIVQRCPFSDF-IFIEAMDKCGYITKRHKDIYYEITRFTLPPLFK 215 (395)
Q Consensus 145 ~~ql~~~~~R~~q~~~al~~~l----~----tG~~VIlDRs~~Sd~-vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~ 215 (395)
..|..|..- +.-..+.+...+ . ....+|+||++.|.. +|--+.+..|.++ +..+..+....-...+-
T Consensus 84 ~~Q~kfatP-~~~~~~~l~~~~~~~~~~~~~p~~~lIfDRHPlSA~vcFPlaryl~G~ls---~~~l~sl~~~lp~~~pG 159 (343)
T PHA03135 84 ALQAKFADP-YLVFHERLSSKCHGKIGTRGNPSLILILDRHPVSATVCFPIARHLLGDCS---LEMLISSIIRLPLEPPG 159 (343)
T ss_pred HHHHHhcch-HHHHHHHHHHHhcccCCCCCCCCceEEEecCCCCCceeeehhhcccCCCC---HHHHHHHHHhCCcCCCC
Confidence 344443221 111111111111 1 124579999999986 6776766777766 44444444433233333
Q ss_pred CCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhh
Q psy6807 216 PHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNN 262 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~ 262 (395)
..+||+...++++..+||++|+|+.|. ++.+|+..++..|.-.
T Consensus 160 ~niVl~~L~~~~E~~rRl~~R~R~gE~----~d~~yL~aL~n~Y~~l 202 (343)
T PHA03135 160 CNLVITILPDEKEHVNRLSSRNRPGET----TDRNMLRALNAVYSSL 202 (343)
T ss_pred CeEEEEECCCHHHHHHHHHHcCCCccc----cCHHHHHHHHHHHHHH
Confidence 345565555689999999999999998 4789999999999753
No 97
>KOG3220|consensus
Probab=99.05 E-value=7.8e-10 Score=100.83 Aligned_cols=184 Identities=15% Similarity=0.190 Sum_probs=115.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhh-------hhhhhhhhhcCCCCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNEN-------LKSYDEKTFCKDPKH 140 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~-------~~~~~~~~f~~dp~~ 140 (395)
+.++.++|.+||||||+++.+. .+|++.++++.+.+.... .+..++.+-+.||.+. ++...-..+|+||+.
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 3689999999999999999999 689999988777776666 5566666655555331 455555778889875
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhcCCe-EEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEE
Q psy6807 141 FHTIAFQIRMLQLRFSVYVDALAHMLSTGQG-AIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLV 219 (395)
Q Consensus 141 ~~~~~~ql~~~~~R~~q~~~al~~~l~tG~~-VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~Pdlv 219 (395)
+.......+-.. |.+. ...+...+.+|.. +|+| .+.+|+.++.. -.+.+
T Consensus 80 r~~Ln~IthP~I-r~em-~ke~~~~~l~G~r~ivlD---------iPLLFE~~~~~-------------------~~~~t 129 (225)
T KOG3220|consen 80 RQALNKITHPAI-RKEM-FKEILKLLLRGYRVIVLD---------IPLLFEAKLLK-------------------ICHKT 129 (225)
T ss_pred HHHHHhcccHHH-HHHH-HHHHHHHHhcCCeEEEEe---------chHHHHHhHHh-------------------heeeE
Confidence 433333333222 2222 2233344556665 4777 34444433221 25788
Q ss_pred EEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhh
Q psy6807 220 IYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDF 296 (395)
Q Consensus 220 IyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f 296 (395)
|-+.||.++..+|+-+|+. ++.++.++-.. .|.-+.+..+.++++ +| |++++++..++|+.+.-
T Consensus 130 vvV~cd~~~Ql~Rl~~Rd~--------lse~dAe~Rl~--sQmp~~~k~~~a~~V-i~--Nng~~~~l~~qv~~v~~ 193 (225)
T KOG3220|consen 130 VVVTCDEELQLERLVERDE--------LSEEDAENRLQ--SQMPLEKKCELADVV-ID--NNGSLEDLYEQVEKVLA 193 (225)
T ss_pred EEEEECcHHHHHHHHHhcc--------ccHHHHHHHHH--hcCCHHHHHHhhhee-ec--CCCChHHHHHHHHHHHH
Confidence 9999999999999999982 22333332211 111111222345664 46 89999999999988655
No 98
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.04 E-value=1.2e-08 Score=92.57 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=44.6
Q ss_pred CCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 215 KPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 215 ~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
.|..+|||++|++++.+|+.+|.... ++.+-++.-.+.++ +.-.+..+++++| ..++++.+++++..
T Consensus 98 ~~~~~v~l~a~~~~l~~Rl~~R~~~~------~~~~vl~~Q~~~~e----~~~~~e~~~~~~d--~~~~~~~~~~~~~~ 164 (176)
T PRK09825 98 PNVHFLWLDGDYETILARMQRRAGHF------MPPDLLQSQFDALE----RPCADEHDIARID--VNHDIENVTEQCRQ 164 (176)
T ss_pred CCEEEEEEeCCHHHHHHHHhcccCCC------CCHHHHHHHHHHcC----CCCCCcCCeEEEE--CCCCHHHHHHHHHH
Confidence 46789999999999999999997532 34554443333332 2222335799999 66677666666644
No 99
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.03 E-value=2.5e-09 Score=96.83 Aligned_cols=177 Identities=15% Similarity=0.203 Sum_probs=101.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc--CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR--GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIA 145 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~--~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~ 145 (395)
.+++|+|.||+|+||||+.++|-+..++.+.-..++..+-.. .|.++--+.. .+.......+.|.+-.+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~---~EF~~~i~~~~fLE~a~------ 73 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTE---EEFEELIERDEFLEWAE------ 73 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCH---HHHHHHHhcCCcEEEEE------
Confidence 578999999999999999999999885544322222211111 3433321111 11122333344443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECC
Q psy6807 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIP 225 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p 225 (395)
+....|......+...+..|+.||+|- ++....++...+ ++.+.|||.+|
T Consensus 74 ----~~gnyYGT~~~~ve~~~~~G~~vildI---------------------d~qGa~qvk~~~-----p~~v~IFi~pP 123 (191)
T COG0194 74 ----YHGNYYGTSREPVEQALAEGKDVILDI---------------------DVQGALQVKKKM-----PNAVSIFILPP 123 (191)
T ss_pred ----EcCCcccCcHHHHHHHHhcCCeEEEEE---------------------ehHHHHHHHHhC-----CCeEEEEEcCC
Confidence 111223333445566678999999993 223333444332 25677777764
Q ss_pred -hHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhhc
Q psy6807 226 -VSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFD 297 (395)
Q Consensus 226 -~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f~ 297 (395)
.+++.+|+..||.+.+.. -.+++..++.+.-. + ...+.++++ .+.|...++|..+.+.
T Consensus 124 s~eeL~~RL~~Rgtds~e~-------I~~Rl~~a~~Ei~~--~-~~fdyvivN----dd~e~a~~~l~~ii~a 182 (191)
T COG0194 124 SLEELERRLKGRGTDSEEV-------IARRLENAKKEISH--A-DEFDYVIVN----DDLEKALEELKSIILA 182 (191)
T ss_pred CHHHHHHHHHccCCCCHHH-------HHHHHHHHHHHHHH--H-HhCCEEEEC----ccHHHHHHHHHHHHHH
Confidence 577788899999665432 23456666554321 1 225666653 5888888888887664
No 100
>PRK06696 uridine kinase; Validated
Probab=99.02 E-value=1.2e-09 Score=102.62 Aligned_cols=54 Identities=30% Similarity=0.347 Sum_probs=38.7
Q ss_pred hhHHHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhccccCCC--Cccccccc
Q psy6807 55 WTLMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPP--ANMDMFYK 108 (395)
Q Consensus 55 ~~~~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e--~~~d~~~~ 108 (395)
..+.+.+.+.-...+.+|+|.|++||||||+|+.|++.|+....+. .++|++|.
T Consensus 8 ~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 8 KELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred HHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 4456666665456788999999999999999999999995332221 13566554
No 101
>PTZ00301 uridine kinase; Provisional
Probab=99.02 E-value=3.6e-09 Score=98.76 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=41.9
Q ss_pred CCEEEEEECChHHHHHHHhh-----cCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEe
Q psy6807 216 PHLVIYLDIPVSKVKENVKK-----RNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYD 277 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eRI~~-----Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D 277 (395)
-|+.|||++|.++++.|..+ ||+..|. +-..|.+.+...+.++..|. +..+++++.+
T Consensus 127 ~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~----v~~~~~~~v~~~~~~~I~p~-k~~ADiIi~~ 188 (210)
T PTZ00301 127 MDCLIFVDTPLDICLIRRAKRDMRERGRTFES----VIEQYEATVRPMYYAYVEPS-KVYADIIVPS 188 (210)
T ss_pred CCEEEEEeCChhHHHHHHHhhhHHhcCCCHHH----HHHHHHHhhcccHHHHcCcc-ccCCcEEEcC
Confidence 48999999999999988654 4555554 33457777788888877764 4678988854
No 102
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.02 E-value=1.3e-08 Score=96.17 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
.++.|+|.|+|||||||+|+.||+++|+.++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is 36 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHIN 36 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 34669999999999999999999999999884
No 103
>KOG3347|consensus
Probab=99.00 E-value=6.1e-09 Score=90.93 Aligned_cols=157 Identities=20% Similarity=0.278 Sum_probs=88.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQI 148 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql 148 (395)
.+.|.|+|.||+||||+|+.||+.+|++++.- .+...+ ..-....++. |+-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i---sd~vkE-n~l~~gyDE~--------------y~c----------- 57 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI---SDLVKE-NNLYEGYDEE--------------YKC----------- 57 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh---hhHHhh-hcchhccccc--------------ccC-----------
Confidence 46899999999999999999999999999842 221111 0000000000 000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHH
Q psy6807 149 RMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSK 228 (395)
Q Consensus 149 ~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~ 228 (395)
+++-. ...++.|...+.. .+.|+|-. ..+.+.+ ...|+||.|++|.++
T Consensus 58 ~i~DE--dkv~D~Le~~m~~-Gg~IVDyH------------gCd~Fpe-----------------rwfdlVvVLr~~~s~ 105 (176)
T KOG3347|consen 58 HILDE--DKVLDELEPLMIE-GGNIVDYH------------GCDFFPE-----------------RWFDLVVVLRTPNSV 105 (176)
T ss_pred ccccH--HHHHHHHHHHHhc-CCcEEeec------------ccCccch-----------------hheeEEEEEecCchH
Confidence 00111 1223445555555 45556621 1222221 135899999999999
Q ss_pred HHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 229 VKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 229 ~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
+.+|+++||-...+-..++..+-+..+.+--.+.|.+. -|... .+...|+....|.++
T Consensus 106 LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~~~-----iV~eL---~s~~~Eem~~ni~ri 163 (176)
T KOG3347|consen 106 LYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYSPK-----IVVEL---QSETKEEMESNISRI 163 (176)
T ss_pred HHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcCCc-----ceeec---CcCCHHHHHHHHHHH
Confidence 99999999965443223355666666655444444432 22222 344557776666554
No 104
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.98 E-value=7.3e-09 Score=108.12 Aligned_cols=33 Identities=27% Similarity=0.593 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPP 100 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e 100 (395)
.+++|+|.|++||||||+++.||++||..++..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~ 315 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDT 315 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecC
Confidence 568999999999999999999999999888843
No 105
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.96 E-value=4.3e-09 Score=94.89 Aligned_cols=176 Identities=14% Similarity=0.181 Sum_probs=88.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccc-ccccc--CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMD-MFYKR--GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIA 145 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d-~~~~~--~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~ 145 (395)
+++|+|.|++||||||+++.|++.++...+...... .+... .|.+..-+.. ....+....+.|..... +
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~- 72 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSK---EEFEEMIAAGEFLEWAE----V- 72 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecH---HHHHHHHHcCCcEEEEE----E-
Confidence 478999999999999999999997655433211111 11110 1111111110 00011111122211110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECC
Q psy6807 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIP 225 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p 225 (395)
....+....+.+...+..|..||+|..+.. ...+... +..+..++++.++
T Consensus 73 -----~~~~y~~~~~~i~~~~~~g~~vi~d~~~~~---------------------~~~~~~~----~~~~~~i~~~~~~ 122 (180)
T TIGR03263 73 -----HGNYYGTPKSPVEEALAAGKDVLLEIDVQG---------------------ARQVKKK----FPDAVSIFILPPS 122 (180)
T ss_pred -----CCeeeCCcHHHHHHHHHCCCeEEEECCHHH---------------------HHHHHHh----CCCcEEEEEECCC
Confidence 000111112344556778999999954311 1111221 2345566666778
Q ss_pred hHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhh
Q psy6807 226 VSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDF 296 (395)
Q Consensus 226 ~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f 296 (395)
.+++.+|+.+|+...+. ...+++...-.+ .. ....+++++++ .+.++....|..+-+
T Consensus 123 ~e~~~~Rl~~r~~~~~~-------~i~~rl~~~~~~-~~--~~~~~d~~i~n----~~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 123 LEELERRLRKRGTDSEE-------VIERRLAKAKKE-IA--HADEFDYVIVN----DDLEKAVEELKSIIL 179 (180)
T ss_pred HHHHHHHHHHcCCCCHH-------HHHHHHHHHHHH-Hh--ccccCcEEEEC----CCHHHHHHHHHHHHh
Confidence 89999999999864332 122233222111 11 12347887753 378988888887643
No 106
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.95 E-value=1.1e-08 Score=93.86 Aligned_cols=178 Identities=14% Similarity=0.128 Sum_probs=94.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc---CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR---GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTI 144 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~---~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~ 144 (395)
.+++|+|.|++|||||||++.|.+++.-.++....+.+.-.. .|.+..-+.. .+..+....+.|.+-..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~---~~F~~~i~~~~f~e~~~----- 74 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTI---EEFKKGIADGEFLEWAE----- 74 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCH---HHHHHHHHcCCeEEEEE-----
Confidence 578999999999999999999998764323322222221111 3333332211 11111112223322111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEEC
Q psy6807 145 AFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDI 224 (395)
Q Consensus 145 ~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~ 224 (395)
+....|..-.+++...++.|+.+|+|-.+ +....+... ++.+-++|||.+
T Consensus 75 -----~~g~~YGt~~~~i~~~~~~g~~~i~d~~~---------------------~g~~~l~~~----~~~~~~~Ifi~p 124 (186)
T PRK14737 75 -----VHDNYYGTPKAFIEDAFKEGRSAIMDIDV---------------------QGAKIIKEK----FPERIVTIFIEP 124 (186)
T ss_pred -----ECCeeecCcHHHHHHHHHcCCeEEEEcCH---------------------HHHHHHHHh----CCCCeEEEEEEC
Confidence 00111223334556667899999998432 111222221 112226899988
Q ss_pred C-hHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhhc
Q psy6807 225 P-VSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFD 297 (395)
Q Consensus 225 p-~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f~ 297 (395)
| .+++.+|+.+|+...+. +..+++..+-.+ ......+++++. |. +.++...++..+-..
T Consensus 125 ps~e~l~~RL~~R~~~s~e-------~i~~Rl~~~~~e---~~~~~~~D~vI~---N~-dle~a~~ql~~ii~~ 184 (186)
T PRK14737 125 PSEEEWEERLIHRGTDSEE-------SIEKRIENGIIE---LDEANEFDYKII---ND-DLEDAIADLEAIICG 184 (186)
T ss_pred CCHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHH---HhhhccCCEEEE---Cc-CHHHHHHHHHHHHhc
Confidence 5 68899999999864322 122333332211 011234677775 34 899999998876553
No 107
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.95 E-value=1.1e-08 Score=92.22 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=26.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
+++.+|+++|++||||||+++.|++++...
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~ 34 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLK 34 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999998743
No 108
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.93 E-value=2.1e-08 Score=94.60 Aligned_cols=33 Identities=33% Similarity=0.523 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPA 101 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~ 101 (395)
..+|+|.|++||||||+++.||+++|+.++...
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~ 36 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTG 36 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCc
Confidence 479999999999999999999999999888543
No 109
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.92 E-value=2.2e-08 Score=92.66 Aligned_cols=32 Identities=38% Similarity=0.593 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPP 100 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e 100 (395)
..+|+|.||.||||||+|+.||++||+.++..
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldT 35 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDT 35 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecc
Confidence 37999999999999999999999999999843
No 110
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.91 E-value=4.5e-09 Score=93.47 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=30.2
Q ss_pred CCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccch
Q psy6807 78 IASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLD 118 (395)
Q Consensus 78 ~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~ 118 (395)
+||||||+++.||+.|+.+++ +.|..+.. .|.++.++.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fi---D~D~~i~~~~g~si~~i~ 39 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFI---DLDDEIEERTGMSISEIF 39 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEE---EHHHHHHHHHTSHHHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCcc---ccCHHHHHHhCCcHHHHH
Confidence 699999999999999999999 66766555 665555443
No 111
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.89 E-value=6.5e-08 Score=87.87 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=28.8
Q ss_pred HHhccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 63 DRFNQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 63 ~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.++...+.+|+|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 12 ALNGHRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred HHhCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56667789999999999999999999999875
No 112
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.89 E-value=2.1e-08 Score=94.15 Aligned_cols=32 Identities=31% Similarity=0.566 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPA 101 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~ 101 (395)
++|+|.|++||||||+++.||++++..++...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g 34 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSG 34 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCc
Confidence 68999999999999999999999998887543
No 113
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.88 E-value=1.2e-07 Score=84.87 Aligned_cols=67 Identities=21% Similarity=0.212 Sum_probs=43.8
Q ss_pred CCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 215 KPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 215 ~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
.|-..|||++|++++.+|+.+|.... .+.+.+..-...+ .|.-.....++++| ...+++++++++..
T Consensus 90 ~~~~~v~l~a~~~~l~~Rl~~R~~~~------a~~~vl~~Q~~~~----ep~~~~e~~~~~id--~~~~~~~~~~~~~~ 156 (163)
T PRK11545 90 PNLSFIYLKGDFDVIESRLKARKGHF------FKTQMLVTQFETL----QEPGADETDVLVVD--IDQPLEGVVASTIE 156 (163)
T ss_pred CCEEEEEEECCHHHHHHHHHhccCCC------CCHHHHHHHHHHc----CCCCCCCCCEEEEe--CCCCHHHHHHHHHH
Confidence 46789999999999999999997532 2455444322222 22211123578889 55677777777754
No 114
>PRK07261 topology modulation protein; Provisional
Probab=98.88 E-value=1.4e-08 Score=91.60 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
+.|+|.|++||||||+|+.|++.++.+++.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~ 30 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLH 30 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEe
Confidence 369999999999999999999999887763
No 115
>PRK06547 hypothetical protein; Provisional
Probab=98.88 E-value=4.5e-08 Score=88.64 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=33.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR 109 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~ 109 (395)
..+++|+|.|++||||||+++.|++.++..++ ++|.+|..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~---~~d~~~~~ 52 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLV---HLDDLYPG 52 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCee---cccceecc
Confidence 56789999999999999999999999988777 45655543
No 116
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.87 E-value=3.1e-08 Score=95.90 Aligned_cols=165 Identities=19% Similarity=0.225 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIR 149 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~ 149 (395)
.+|+|+|.|||||||+|+.|++.+.........++. +.+ . ..... |.++... -
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~-------------~~~-----~-~~~~~-y~~~~~E----k--- 54 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISD-------------DSL-----G-IDRND-YADSKKE----K--- 54 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-T-------------HHH-----H--TTSS-S--GGGH----H---
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcc-------------ccc-----c-cchhh-hhchhhh----H---
Confidence 589999999999999999999987653221111110 000 0 11122 3333210 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHH
Q psy6807 150 MLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKV 229 (395)
Q Consensus 150 ~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~ 229 (395)
..... ...++...++....||+|.- .|+..--|+.|..-... .-+..+||+++|.+.|
T Consensus 55 ~~R~~---l~s~v~r~ls~~~iVI~Dd~--------------nYiKg~RYelyclAr~~-----~~~~c~i~~~~~~e~~ 112 (270)
T PF08433_consen 55 EARGS---LKSAVERALSKDTIVILDDN--------------NYIKGMRYELYCLARAY-----GTTFCVIYCDCPLETC 112 (270)
T ss_dssp HHHHH---HHHHHHHHHTT-SEEEE-S-----------------SHHHHHHHHHHHHHT-----T-EEEEEEEE--HHHH
T ss_pred HHHHH---HHHHHHHhhccCeEEEEeCC--------------chHHHHHHHHHHHHHHc-----CCCEEEEEECCCHHHH
Confidence 11111 12234445678889999942 23443345555433332 3468999999999999
Q ss_pred HHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccC--CCCcEEEEeC-CCCCChhHHHHHH
Q psy6807 230 KENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQIS--DSSELLVYDW-SDGGDPEVVVEDI 291 (395)
Q Consensus 230 ~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~--~~~~vli~D~-t~~~~~e~V~edI 291 (395)
++|=.+|+.+.. ++.+-++.+...|+. |.-. -.++.+++++ ...-+.+.|.+.|
T Consensus 113 ~~~N~~R~~~~~-----~~~e~i~~m~~RfE~---P~~~nrWD~plf~i~~~~~~~~~~~I~~~l 169 (270)
T PF08433_consen 113 LQRNSKRPEPER-----YPEETIDDMIQRFEE---PDPKNRWDSPLFTIDSSDEELPLEEIWNAL 169 (270)
T ss_dssp HHHHHHTT-S-------S-HHHHHHHHHH------TTSS-GGGS-SEEEE-TTS---HHHHHHHH
T ss_pred HHhhhccCCCCC-----CCHHHHHHHHHHhcC---CCCCCCccCCeEEEecCCCCCCHHHHHHHH
Confidence 999999986532 467777888887764 3322 2456778884 2333566666666
No 117
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.87 E-value=5.6e-08 Score=84.10 Aligned_cols=30 Identities=40% Similarity=0.628 Sum_probs=27.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCCC
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALPP 100 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~e 100 (395)
+|+|.|++||||||+|+.||+++|++++..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~ 30 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDT 30 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 589999999999999999999999988743
No 118
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.85 E-value=2e-08 Score=92.49 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=25.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+.+|+|.|++||||||+++.|+..++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5678999999999999999999999876
No 119
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.85 E-value=7.9e-08 Score=100.83 Aligned_cols=105 Identities=16% Similarity=0.279 Sum_probs=74.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
..+.+|++.|.|||||||+|+.+++..|..++.. |. + + .
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~---D~---------------l----------g----------~--- 405 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNA---DT---------------L----------G----------S--- 405 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCeEECc---HH---------------H----------H----------H---
Confidence 4568999999999999999999999887766632 21 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
+.....+....|..|..||+|... ........|.++.... ..|-.+||+++|.
T Consensus 406 --------~~~~~~~a~~~L~~G~sVVIDaTn---------------~~~~~R~~~i~lAk~~----gv~v~~i~~~~p~ 458 (526)
T TIGR01663 406 --------TQNCLTACERALDQGKRCAIDNTN---------------PDAASRAKFLQCARAA----GIPCRCFLFNAPL 458 (526)
T ss_pred --------HHHHHHHHHHHHhCCCcEEEECCC---------------CCHHHHHHHHHHHHHc----CCeEEEEEeCCCH
Confidence 011122345567899999999543 4445556666665542 2466899999999
Q ss_pred HHHHHHHhhcCCc
Q psy6807 227 SKVKENVKKRNNP 239 (395)
Q Consensus 227 e~~~eRI~~Rgr~ 239 (395)
++|++|+..|...
T Consensus 459 e~~~~Rn~~R~~~ 471 (526)
T TIGR01663 459 AQAKHNIAFRELS 471 (526)
T ss_pred HHHHHHHHhhccC
Confidence 9999999999763
No 120
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.81 E-value=9.8e-08 Score=88.30 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
++++|+|.|.|||||||+|+.||+++|..++
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 4689999999999999999999999998765
No 121
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.77 E-value=5.1e-08 Score=87.61 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=32.3
Q ss_pred HHHhccCCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 62 EDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 62 ~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
..+..+++.+|.++|.+||||||+|..|+++|-..+..
T Consensus 16 ~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~ 53 (197)
T COG0529 16 EALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYH 53 (197)
T ss_pred HHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCe
Confidence 34556788999999999999999999999999776653
No 122
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.77 E-value=1.7e-08 Score=84.96 Aligned_cols=22 Identities=45% Similarity=0.602 Sum_probs=21.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q psy6807 72 IVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 72 I~i~G~~GsGKSTlak~La~~l 93 (395)
|+|.|.+||||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 123
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.76 E-value=1.7e-08 Score=88.78 Aligned_cols=119 Identities=21% Similarity=0.335 Sum_probs=62.6
Q ss_pred EEcCCCCChHHHHHHHHHHhccccCCCCcccccccc---CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHHH
Q psy6807 74 VEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR---GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIRM 150 (395)
Q Consensus 74 i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~---~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~~ 150 (395)
|.|+|||||||+|+.||+++|..++... ..+.. .+.. +|.. ......+.+ .-+-.....+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~---~llr~~~~~~s~-------~g~~------i~~~l~~g~-~vp~~~v~~l 63 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVG---DLLREEIKSDSE-------LGKQ------IQEYLDNGE-LVPDELVIEL 63 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHH---HHHHHHHHTTSH-------HHHH------HHHHHHTTS-S--HHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechH---HHHHHHHhhhhH-------HHHH------HHHHHHhhc-cchHHHHHHH
Confidence 6799999999999999999999988422 21111 0000 0000 011111111 0011121222
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHHH
Q psy6807 151 LQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVK 230 (395)
Q Consensus 151 ~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~~ 230 (395)
+.. .+... ...+++|+|.+|-+-- ....+.++.. .....|+.+|+|++|.+++.
T Consensus 64 l~~-------~l~~~-~~~~g~ildGfPrt~~---------------Qa~~l~~~~~---~~~~~~~~vi~L~~~~~~~~ 117 (151)
T PF00406_consen 64 LKE-------RLEQP-PCNRGFILDGFPRTLE---------------QAEALEEILE---EEGIPPDLVIFLDCPDETLI 117 (151)
T ss_dssp HHH-------HHHSG-GTTTEEEEESB-SSHH---------------HHHHHHHHHH---HTTSEESEEEEEE--HHHHH
T ss_pred HHH-------HHhhh-cccceeeeeeccccHH---------------HHHHHHHHHh---hcccchheeeccccchhhhh
Confidence 222 22222 4568999998884321 1122222211 12346899999999999999
Q ss_pred HHHhh
Q psy6807 231 ENVKK 235 (395)
Q Consensus 231 eRI~~ 235 (395)
+|+.+
T Consensus 118 ~R~~~ 122 (151)
T PF00406_consen 118 ERLSQ 122 (151)
T ss_dssp HHHHT
T ss_pred hhccc
Confidence 99987
No 124
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.75 E-value=1.7e-07 Score=86.37 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=29.4
Q ss_pred HHhccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 63 DRFNQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 63 ~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.|+..++.+|+|+|.+||||||+++.|+..+.
T Consensus 18 ~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 18 QLHGHKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred HhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67878899999999999999999999999874
No 125
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.74 E-value=1.5e-07 Score=93.74 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=38.8
Q ss_pred CCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhccccc---CCCCcEEEEeCC
Q psy6807 215 KPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQI---SDSSELLVYDWS 279 (395)
Q Consensus 215 ~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~---~~~~~vli~D~t 279 (395)
.+..+||+++|++++++|..+|+.. ++.+-++.+...|+. |.. +-.++.++++++
T Consensus 154 ~~~~~V~ld~ple~~l~RN~~R~~~-------v~devie~m~~r~E~---P~~~~nrWd~pl~~v~~~ 211 (340)
T TIGR03575 154 LGFCQLFLDCPVESCLLRNKQRPVP-------LPDETIQLMGRKIEK---PNPEKNAWEHNSLVIQSS 211 (340)
T ss_pred CCEEEEEEeCCHHHHHHHHhcCCCC-------CCHHHHHHHHHHhcC---CCCCCCCCCCCeEEEecC
Confidence 4569999999999999999999743 445555555555543 442 225788899864
No 126
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.74 E-value=3.5e-08 Score=90.58 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=37.2
Q ss_pred CCEEEEEECChHHHHHHH-----hhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEE
Q psy6807 216 PHLVIYLDIPVSKVKENV-----KKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLV 275 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eRI-----~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli 275 (395)
.|+.|||+++.++++.|. ..||+..|. +-..|. .+...|..+..|. ++.+++++
T Consensus 127 ~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~----~~~~~~-~~~~~~~~~I~p~-~~~ADivi 185 (194)
T PF00485_consen 127 FDLKIFLDADEDLRLERRIQRDVAERGRSPEE----VIAQYE-RVRPGYERYIEPQ-KERADIVI 185 (194)
T ss_dssp -SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHH----HHHHHH-THHHHHHHCTGGG-GGG-SEEE
T ss_pred ceeEEEecccHHHHHHHHhhhhccccCCccee----EEEEee-cCChhhhhheecc-ccccEEEE
Confidence 589999999999988873 456777665 334554 8888999988875 45788877
No 127
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.72 E-value=2.3e-07 Score=86.10 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=26.8
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
.+++.+|+|.|++||||||+++.|+..++.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 356789999999999999999999998764
No 128
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.68 E-value=2.4e-08 Score=83.96 Aligned_cols=28 Identities=36% Similarity=0.731 Sum_probs=26.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+|+|.|++||||||+|+.||+++|+.++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i 28 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVI 28 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 6899999999999999999999999887
No 129
>PHA03133 thymidine kinase; Provisional
Probab=98.67 E-value=4.4e-07 Score=89.98 Aligned_cols=177 Identities=19% Similarity=0.214 Sum_probs=106.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhc----cccCCCCcccccccc-CC-CccccchhhhhhhhhhhhhhhhhcCCCCCcc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELD----MIALPPANMDMFYKR-GD-FDWRSLDAEWSNENLKSYDEKTFCKDPKHFH 142 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~----~~~~~e~~~d~~~~~-~g-~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~ 142 (395)
--.|.|+|+.|.||||.++.+++.++ ..+++|| -.++.. .+ ..+..+... ...+..++.-.......
T Consensus 40 ~~rvYlDG~~GvGKTTt~~~l~~a~~~~~~vl~~pEP--M~YWr~~f~sd~i~~IY~t-----q~r~~~GeiS~~~A~~~ 112 (368)
T PHA03133 40 LLRIYVDGPHGLGKTTTAAALAAALGRRDDIEYVPEP--MAYWQVLGGSETIARIFDA-----QHRLDRGEISAGEAAVA 112 (368)
T ss_pred EEEEEEeCCCcCCHHHHHHHHHHhhCCCCCeEEecCc--HHHHHHHhhhhHHHHHHHH-----HHHHhccCcchhhhhhH
Confidence 35789999999999999999988876 4577887 333333 22 112222110 11111111111111011
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH----hc--------CCeEEEeccCcch-HHHHHHHHhcCCCChhHHHHHHHHHHHh
Q psy6807 143 TIAFQIRMLQLRFSVYVDALAHML----ST--------GQGAIVQRCPFSD-FIFIEAMDKCGYITKRHKDIYYEITRFT 209 (395)
Q Consensus 143 ~~~~ql~~~~~R~~q~~~al~~~l----~t--------G~~VIlDRs~~Sd-~vf~~a~~~~g~i~~~~~~~y~~~~~~~ 209 (395)
-...|+.|..-. ......+...+ .. ...+|+||.+.|. .||--+.|..|.++-..+- .+.. +
T Consensus 113 ~~s~Q~kFatPy-~~~~~~~~~~~g~~~~~~~~~~p~~d~~lifDRHPlAa~vcFPlary~~G~ls~~~li---slla-~ 187 (368)
T PHA03133 113 MTSAQVTMSTPY-AVTEAAVAPHIGGELPPGHAPHPNIDLTLVFDRHPVAPLLCYPAARYLMGSLSLPAVL---SFAA-L 187 (368)
T ss_pred HHHHHHHhcChH-HHHHHHHHHHhccCCCCCCCCCCCCCeEEeecCCcCchhhhhhHHHHHcCCCCHHHHH---HHHH-h
Confidence 234565543321 11111111111 11 2457899999987 4788888999999854332 1221 1
Q ss_pred CCCCCCCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHh
Q psy6807 210 LPPLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKN 261 (395)
Q Consensus 210 ~~~l~~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~ 261 (395)
++..++-+.+|.++.+.++-++|+++|+|+.|. ++..|+..+...|.-
T Consensus 188 lp~~~pG~NiVl~~L~~~E~~~RL~~R~R~gE~----~D~~~l~alrnvY~~ 235 (368)
T PHA03133 188 LPPTTPGTNLVLGALPEAAHAERLAQRQRPGER----LDLAMLSAIRRVYDM 235 (368)
T ss_pred CCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccc----cCHHHHHHHHHHHHH
Confidence 222233368999999999999999999999998 688999999999864
No 130
>PRK15453 phosphoribulokinase; Provisional
Probab=98.66 E-value=4.6e-08 Score=94.65 Aligned_cols=60 Identities=23% Similarity=0.180 Sum_probs=44.5
Q ss_pred CCCEEEEEECChHHHHHH-----HhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcE-----EEEeCCC
Q psy6807 215 KPHLVIYLDIPVSKVKEN-----VKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSEL-----LVYDWSD 280 (395)
Q Consensus 215 ~PdlvIyLd~p~e~~~eR-----I~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~v-----li~D~t~ 280 (395)
..|+.||++++.+++..| +.+||++.|. |...+++++ ..|.++..|+.+ .+++ -++|+||
T Consensus 146 ~~DlkIfVdp~~dlr~irRI~RD~~ERGrs~Es----Vi~qilrrm-Pdy~~yI~PQ~~-~tdInfqrvp~vdts~ 215 (290)
T PRK15453 146 HVDLLIGVVPIVNLEWIQKIHRDTSERGYSREA----VMDTILRRM-PDYINYITPQFS-RTHINFQRVPTVDTSN 215 (290)
T ss_pred hCCeeEeeCCcHhHHHHHHHHhhhHhhCCCHHH----HHHHHHHhC-ChHhhhCCCCcc-cCcEEEEeCCccCCCC
Confidence 359999999999999755 3568998887 667888886 779998888764 3443 3456554
No 131
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.65 E-value=6.6e-07 Score=87.45 Aligned_cols=126 Identities=19% Similarity=0.152 Sum_probs=67.6
Q ss_pred CCEEEEEECChHHHHHHHhh--cCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 216 PHLVIYLDIPVSKVKENVKK--RNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eRI~~--Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
...+|||++|++++.+|++. |.+|.-.+ .+..+.+....+. +.+ +.+.+++ ++| |+..+++++++.|..
T Consensus 86 ~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~-----~~l~e~I~~eR~~-l~p-l~~~ADi-vID-Ts~ls~~el~e~I~~ 156 (288)
T PRK05416 86 DVRVLFLDASDEVLIRRYSETRRRHPLSGD-----GSLLEGIELEREL-LAP-LRERADL-VID-TSELSVHQLRERIRE 156 (288)
T ss_pred cEEEEEEECCHHHHHHHHhhcccCCCccCC-----ccHHHHHHHHHhh-hhh-HHHhCCE-EEE-CCCCCHHHHHHHHHH
Confidence 35789999999999999975 34554321 1222223332221 111 2234665 557 456789999999977
Q ss_pred hhhccccccccccccccccchhHHHHHhhhhhccchhHhh--hhhccCCCCCCcee-ecchhhhHHHHHHH
Q psy6807 294 IDFDHYDHFSNKMREWRQLTTKEWNNLRMLYADEKSDLMT--AFNTVERYDCPELA-YTGDDMMEIEEKLS 361 (395)
Q Consensus 294 l~f~~~~~~~~~~~~w~~~~~~~~~~~r~~~~~~~~~~~~--~~~~~~~~~~~e~~-~~~~~~~~~~~~~~ 361 (395)
.--. ... =....-.++...+-...| -+-|.+ ++- .|.| +|||- .++.|.+..-+++.
T Consensus 157 ~l~~----~~~----~~~i~~~SFg~k~g~p~d-ad~vfDvR~lp-NP~~-~~~lr~~tG~d~~v~~~v~~ 216 (288)
T PRK05416 157 RFGG----RER----GLTVTVESFGFKYGIPLD-ADLVFDVRFLP-NPHY-DPELRPLTGLDKPVADYVLA 216 (288)
T ss_pred HHhc----CCC----ceEEEEEeecccCCCCCC-CCEEEEeCcCC-CCCC-ChhhccCCCCCHHHHHHHHc
Confidence 4311 000 011223445555544555 233332 344 6777 88876 56666555554443
No 132
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.65 E-value=3.9e-07 Score=83.03 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+++|+|.||+||||+|+++.|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 5799999999999999999999886
No 133
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.64 E-value=4.2e-07 Score=81.81 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=26.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+++.+|+|.|++||||||+++.|+..+..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999998853
No 134
>PRK12338 hypothetical protein; Provisional
Probab=98.64 E-value=1.2e-06 Score=86.56 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
++.+|+|.|++||||||+|+.||+++|+.++
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 4689999999999999999999999998876
No 135
>PRK07667 uridine kinase; Provisional
Probab=98.63 E-value=6.5e-07 Score=82.31 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=28.2
Q ss_pred HhccCCeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 64 RFNQNSKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 64 ~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
.......+|+|+|++||||||+++.|++.++...
T Consensus 12 ~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~ 45 (193)
T PRK07667 12 KHKENRFILGIDGLSRSGKTTFVANLKENMKQEG 45 (193)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 3345568999999999999999999999986543
No 136
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.63 E-value=3.2e-07 Score=84.14 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=29.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh-ccccCCCCcccccccc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADEL-DMIALPPANMDMFYKR 109 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l-~~~~~~e~~~d~~~~~ 109 (395)
+|+|.|++||||||+|+.|++.+ +...+ ++|.+|..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i---~~Ddf~~~ 37 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVI---HQDDFFKP 37 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEE---ccccccCC
Confidence 58999999999999999999998 45555 55665544
No 137
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.63 E-value=1.7e-07 Score=101.47 Aligned_cols=31 Identities=32% Similarity=0.546 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
.++|+|.|++||||||+++.||++|+..++.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~ 472 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLD 472 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEec
Confidence 5689999999999999999999999999984
No 138
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=98.62 E-value=5.3e-07 Score=86.87 Aligned_cols=167 Identities=17% Similarity=0.264 Sum_probs=91.6
Q ss_pred cCCCCChHHHHHHHHHHhc----cccCCCCcccccccc-CCCc-cccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHH
Q psy6807 76 GPIASGKTEFCKKLADELD----MIALPPANMDMFYKR-GDFD-WRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIR 149 (395)
Q Consensus 76 G~~GsGKSTlak~La~~l~----~~~~~e~~~d~~~~~-~g~d-~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~ 149 (395)
|+.|.||||+++.|++... .-+++|| ..++.. .+.| +..+... ...+..++.-....+..-+..|..
T Consensus 1 G~~GvGKTT~~~~l~~~~~~~~~vl~~pEP--M~YWr~~f~~d~i~~Iy~~-----~~r~~~G~~s~~~as~~~~~~Q~~ 73 (281)
T PF00693_consen 1 GAMGVGKTTTLKALAEALPAGDPVLYFPEP--MAYWRTVFGTDVIKGIYEA-----QKRKDRGEISSEEASAIMASCQMK 73 (281)
T ss_dssp SSTTSSHHHHHHHHHHCCTSSCCEEEE-----HHHHHTCSSSSHHHHHHHH-----HHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHccCCCCCeEEeccc--HHHHHHHhhHHHHHHHHHH-----HhHhhccCcCccHHHHHHHHHHHH
Confidence 8999999999999999874 3567777 334444 3222 2222110 011111111000000112344555
Q ss_pred HHHHHHHHHHHHHHHHH----------hcCCeEEEeccCcchH-HHHHHHHhcCCCChhHHHHHHHHHHHhCCCC---CC
Q psy6807 150 MLQLRFSVYVDALAHML----------STGQGAIVQRCPFSDF-IFIEAMDKCGYITKRHKDIYYEITRFTLPPL---FK 215 (395)
Q Consensus 150 ~~~~R~~q~~~al~~~l----------~tG~~VIlDRs~~Sd~-vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l---~~ 215 (395)
|..- +......+.... .....+|+||.+.|.. +|--+.|..|.++-. ++...+ ..+ +.
T Consensus 74 fatP-~~~~~~~i~~~~~~~~~~~~~~~pd~~~ifDRHplAA~vcFPlary~~G~ls~~------~li~ll-a~~p~~~p 145 (281)
T PF00693_consen 74 FATP-YLALHARISRLCGPEAVPPAGPSPDVWLIFDRHPLAATVCFPLARYLLGDLSFE------DLISLL-ATFPPEPP 145 (281)
T ss_dssp HHHH-HHHHHHHHCCTSEEEEECTTSSS-SEEEEEES-THHHHTHHHHHHHHTTSS-HH------HHHHHH-TTS----T
T ss_pred hcch-HHHHHHHHHHhcCCccCCCCCCCCCeEEEEecchhHHHHHHHHHHHHhCCCCHH------HHHHHH-HhCCCCCC
Confidence 4432 111111222111 1123579999999986 788888999999843 333322 223 23
Q ss_pred CCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHh
Q psy6807 216 PHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKN 261 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~ 261 (395)
-+.+|.+++|+++-++||++|+|+.|. ++..|+..+..+|.-
T Consensus 146 G~niVl~~L~~~E~~rRl~~R~R~gE~----vd~~~l~~Lr~~Y~~ 187 (281)
T PF00693_consen 146 GTNIVLMTLPEEEHLRRLKARGRPGER----VDLNYLRALRNVYHA 187 (281)
T ss_dssp TEEEEEEE--HHHHHHHHHHTSTTT-S------HHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCccc----cCHHHHHHHHHHHHH
Confidence 357888999999999999999999996 789999999999974
No 139
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.62 E-value=4e-07 Score=83.61 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=36.3
Q ss_pred CCEEEEEECChHHHHHHHhhc-----CCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEE
Q psy6807 216 PHLVIYLDIPVSKVKENVKKR-----NNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVY 276 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eRI~~R-----gr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~ 276 (395)
.|++|||++|.+++++|...| +...|. ....+...+...|..++.+ .++.+++++-
T Consensus 119 ~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~----~~~~~~~~~~~~~~~~i~~-~~~~aD~ii~ 179 (198)
T cd02023 119 MDLKIFVDTDADVRLIRRIERDIVERGRDLES----VINQYLKFVKPMHEQFIEP-TKRYADVIIP 179 (198)
T ss_pred cCeEEEEECChhHHHHHHHHHHhhhcCCCHHH----HHHHHHHhhhhhHHHhCcc-chhceeEEEC
Confidence 589999999999988886555 333332 1234555566677666543 3456787663
No 140
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.62 E-value=7.2e-08 Score=85.80 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
++.+|+|+|.+||||||+|+.|.++|.....+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~ 32 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIK 32 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 36899999999999999999999999766553
No 141
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.61 E-value=2.7e-07 Score=98.12 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=26.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+.+.+|+|+|.+||||||+|+.||+.|+.
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 45779999999999999999999999986
No 142
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.58 E-value=1.9e-06 Score=78.17 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=80.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhh--cCCCCCcccHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTF--CKDPKHFHTIAF 146 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f--~~dp~~~~~~~~ 146 (395)
+++|++.|++.|||||+|+.|.+.+..+++.- .+|.... .+ |...... ...+ -.+..+. ...+
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l-~~D~f~~-----------~~-~~~~~~~-~~g~~~~~~~~~~-~~~~ 65 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHL-SVDTFVD-----------MM-PPGRYRP-GDGLEPAGDRPDG-GPLF 65 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEE-EHHHHHH-----------HS--GGGGTS-TTSEEEETTSEEE--HHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEE-ecChHHh-----------hc-CcccccC-CccccccccCCch-hHHH
Confidence 47999999999999999999999988765421 1222110 00 1000000 0000 0010000 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
. ..+..+..++....+.|.+||+|..+.....+ .+.+.+.+. ..|-+.|=|.||.
T Consensus 66 ~-----~~~~~~~~~iaa~a~aG~~VIvD~v~~~~~~l--------------~d~l~~~L~------~~~vl~VgV~Cpl 120 (174)
T PF07931_consen 66 R-----RLYAAMHAAIAAMARAGNNVIVDDVFLGPRWL--------------QDCLRRLLA------GLPVLFVGVRCPL 120 (174)
T ss_dssp H-----HHHHHHHHHHHHHHHTT-EEEEEE--TTTHHH--------------HHHHHHHHT------TS-EEEEEEE--H
T ss_pred H-----HHHHHHHHHHHHHHhCCCCEEEecCccCcHHH--------------HHHHHHHhC------CCceEEEEEECCH
Confidence 1 11222334555667899999999544222111 111112222 2467899999999
Q ss_pred HHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 227 SKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 227 e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
+++.+|-..||....- . ....|...... ...+ +.+| |...++++.++.|..
T Consensus 121 eil~~RE~~RgDR~~G------~-----a~~q~~~Vh~~---~~YD-leVD-Ts~~sp~ecA~~I~~ 171 (174)
T PF07931_consen 121 EILERRERARGDRPIG------L-----AAWQAEHVHEG---GRYD-LEVD-TSATSPEECAREILA 171 (174)
T ss_dssp HHHHHHHHHHTSSSTT------H-----HHHHTTGGGTT------S-EEEE-TTSS-HHHHHHHHHT
T ss_pred HHHHHHHHhcCCcchH------H-----HHHHHhhcccC---CCCC-EEEE-CCCCCHHHHHHHHHH
Confidence 9999999999964321 1 11122221111 1124 4668 556789999988853
No 143
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.56 E-value=1.5e-06 Score=77.29 Aligned_cols=119 Identities=21% Similarity=0.176 Sum_probs=56.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHHH
Q psy6807 72 IVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIRM 150 (395)
Q Consensus 72 I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~~ 150 (395)
|+|+|++||||||+++.|++. |...++|.. ..+.. .+.... ..-+.......+|..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~a--r~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 59 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYA--REIIEEGGRRDR-------------------DTLPWEDDLLAFQEGI 59 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TT--HHHHHHSSSS-T-------------------TSS-TT-THHHHHHH-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecH--HHHHHHhccccc-------------------hhhhhcchHHHHHHHH
Confidence 899999999999999999998 888887652 22221 110000 0000000123444444
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHH
Q psy6807 151 LQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSK 228 (395)
Q Consensus 151 ~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~ 228 (395)
+..+..+... ......||.||++++..+|....... .... ..+... ....|++|+|....+.
T Consensus 60 l~~~~~~~~~-----~~~~~~vi~Dr~~~d~~aY~~~~~~~---~~~~---l~~~~~-----~~~yd~v~~l~~~~~~ 121 (163)
T PF13521_consen 60 LEQQLEAEAS-----AKSSDVVICDRGPLDTLAYSEFYFGD---YPEE---LEREAR-----LSRYDLVFLLPPDPPW 121 (163)
T ss_dssp -HHHHHHHHH-----HH-SSEEEESS-HHHHHHHHHHHHS------HH---HHHHHH-----HS--SEEEEEE-----
T ss_pred HHHHHHHHHh-----hcCCCcEEEeCChHHHHHHHHHhcCc---chHH---HHHHHH-----hCCCCEEEEeCCcccc
Confidence 4333222211 14678899999999999998765421 1111 222111 1246899999876644
No 144
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.55 E-value=9.4e-07 Score=96.60 Aligned_cols=76 Identities=9% Similarity=0.035 Sum_probs=46.9
Q ss_pred CCCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHH-hh--cccccCCCCcEEEEeCCCCCChhHHHHH
Q psy6807 214 FKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYK-NN--YLPQISDSSELLVYDWSDGGDPEVVVED 290 (395)
Q Consensus 214 ~~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk-~~--~l~~~~~~~~vli~D~t~~~~~e~V~ed 290 (395)
|..++.|||+|++++..+|...+... .+ -.+-++.+...-+ .. ..| .+...+-+++| |..-++|+|++.
T Consensus 153 p~a~~K~~l~A~~~~Ra~Rr~~~~~~--~~----~~~~~~~~~~Rd~~d~R~~~p-l~~~~da~~id-ts~~~~~~v~~~ 224 (712)
T PRK09518 153 PDAEVRILLTAREEVRQARRSGQDRS--ET----PGVVLEDVAARDEADSKVTSF-LSAADGVTTLD-NSDLDFDETLDL 224 (712)
T ss_pred cCCCeEEEEECCHHHHHHHHHHhhhc--CC----HHHHHHHHHHHhhhcccccCC-CCCCCCeEEEE-CCCCCHHHHHHH
Confidence 45689999999999999998766432 11 1223333332211 11 112 12235678889 567799999999
Q ss_pred HHHhhhc
Q psy6807 291 IERIDFD 297 (395)
Q Consensus 291 Ie~l~f~ 297 (395)
|..+.-+
T Consensus 225 i~~~i~~ 231 (712)
T PRK09518 225 LIGLVED 231 (712)
T ss_pred HHHHHHh
Confidence 9776544
No 145
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.55 E-value=8.3e-08 Score=92.21 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=45.0
Q ss_pred CCEEEEEECChHHHHHH-----HhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcE-----EEEeCCC
Q psy6807 216 PHLVIYLDIPVSKVKEN-----VKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSEL-----LVYDWSD 280 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eR-----I~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~v-----li~D~t~ 280 (395)
.|+.||++++.++++.| +.+||++.|. |...|++++ ..|.++..|+.+ .+++ -++|+||
T Consensus 141 ~DlkIfVd~~~dlr~irRI~RD~~ERGrs~Es----Vi~qilrrm-pdy~~yI~PQ~~-~tDI~fqr~p~vdts~ 209 (277)
T cd02029 141 ADLLVGVVPIINLEWIQKIHRDTAERGYSAEA----VMDTILRRM-PDYINYICPQFS-RTDINFQRVPTVDTSN 209 (277)
T ss_pred CCeEEEecCcHHHHHHHHHHhhhHhhCCCHHH----HHHHHHHhC-chHHhhCCcccc-cCcEEEeccCcccCCC
Confidence 59999999999999755 3468998887 678899988 889998888754 3443 3456554
No 146
>COG0645 Predicted kinase [General function prediction only]
Probab=98.54 E-value=1.1e-06 Score=78.71 Aligned_cols=125 Identities=17% Similarity=0.265 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIR 149 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~ 149 (395)
+++++.|.+||||||+|+.|++.+|...+..+.....+ .|. |.. -..|....+...+..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L--~g~----------p~~---------~r~~~g~ys~~~~~~ 60 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRL--FGV----------PEE---------TRGPAGLYSPAATAA 60 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHh--cCC----------ccc---------ccCCCCCCcHHHHHH
Confidence 57899999999999999999999999888544322111 121 110 011111111222221
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHH
Q psy6807 150 MLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKV 229 (395)
Q Consensus 150 ~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~ 229 (395)
.| .+....-..++..|..||+|. ++.++.+...+..+... .-.+...|.+++|++++
T Consensus 61 vy----~~l~~~A~l~l~~G~~VVlDa---------------~~~r~~~R~~~~~~A~~----~gv~~~li~~~ap~~v~ 117 (170)
T COG0645 61 VY----DELLGRAELLLSSGHSVVLDA---------------TFDRPQERALARALARD----VGVAFVLIRLEAPEEVL 117 (170)
T ss_pred HH----HHHHHHHHHHHhCCCcEEEec---------------ccCCHHHHHHHHHHHhc----cCCceEEEEcCCcHHHH
Confidence 11 222222344678999999994 44555566665555543 22456789999999999
Q ss_pred HHHHhhcCC
Q psy6807 230 KENVKKRNN 238 (395)
Q Consensus 230 ~eRI~~Rgr 238 (395)
.+|+.+|..
T Consensus 118 ~~rl~aR~~ 126 (170)
T COG0645 118 RGRLAARKG 126 (170)
T ss_pred HHHHHHhCC
Confidence 999999976
No 147
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.53 E-value=9.3e-07 Score=77.97 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+|+|+|.+||||||+++.|++.+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999883
No 148
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.51 E-value=7.9e-07 Score=95.95 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=28.7
Q ss_pred HhccCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 64 RFNQNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 64 ~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+...++++|+++|.+||||||+|+.|+++|+.
T Consensus 455 ~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~ 486 (632)
T PRK05506 455 RKGQKPATVWFTGLSGSGKSTIANLVERRLHA 486 (632)
T ss_pred HhCCCcEEEEecCCCCchHHHHHHHHHHHHHH
Confidence 55667899999999999999999999999854
No 149
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=98.50 E-value=2.4e-06 Score=80.80 Aligned_cols=170 Identities=12% Similarity=0.063 Sum_probs=102.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
..+-+|+++|++||||+.+.+.|.+.++-.++..-+... |.. ..
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~-----------------pt~-------------------eE 72 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPK-----------------PSD-------------------RE 72 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCC-----------------CCH-------------------HH
Confidence 457899999999999999999999988877663222111 110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHH---hCCCCCCCCEEEEEE
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRF---TLPPLFKPHLVIYLD 223 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~---~~~~l~~PdlvIyLd 223 (395)
..+-+..|+... +=..|+..|++||-|++.+-... .|.+++.++....+-... ++..-.-.-+.+||.
T Consensus 73 ~~~p~lwRfw~~------lP~~G~i~IF~rSwY~~~lv~rv---~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflh 143 (230)
T TIGR03707 73 RTQWYFQRYVQH------LPAAGEIVLFDRSWYNRAGVERV---MGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLS 143 (230)
T ss_pred HcChHHHHHHHh------CCCCCeEEEEeCchhhhHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Confidence 011133454432 23579999999999999653332 378888776654443222 111111234789999
Q ss_pred CChHHHHHHHhhcCCccccCCCCCc-H-----HHHHHHHHHHHhhcccccCCCCcEEEEeCCCCC
Q psy6807 224 IPVSKVKENVKKRNNPWEVNSPIFN-D-----KYLHEIEDLYKNNYLPQISDSSELLVYDWSDGG 282 (395)
Q Consensus 224 ~p~e~~~eRI~~Rgr~~E~~~~~v~-~-----~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~ 282 (395)
+|.++..+|+++|-....+.= .++ . +......++|++.+..--...++..+|++++..
T Consensus 144 Isk~eQ~kRl~~r~~~p~k~W-k~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~ 207 (230)
T TIGR03707 144 VSREEQLRRFKARIDDPLKQW-KLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDDKK 207 (230)
T ss_pred CCHHHHHHHHHHHhcCCcccc-cCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHH
Confidence 999999999998864332211 122 1 223344445554443222346889999855433
No 150
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.48 E-value=2.9e-07 Score=83.65 Aligned_cols=173 Identities=17% Similarity=0.263 Sum_probs=88.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC-CCCcccccccc---CCCccccchhhhhhhh-hhhhhhhhhcCCCC-Cc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL-PPANMDMFYKR---GDFDWRSLDAEWSNEN-LKSYDEKTFCKDPK-HF 141 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~-~e~~~d~~~~~---~g~d~~~l~~~l~p~~-~~~~~~~~f~~dp~-~~ 141 (395)
+.++|+|.|++||||||+++.|.+.++..+. +...+.++-.. .|.+..-+. ++. .++...+.|..... +.
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs----~~~f~~~~~~~~fie~~~~~g 76 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVS----KEEFERMIKAGEFIEYGEYDG 76 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE------HHHHHHHHHTTHEEEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEe----echhhhhhccccEEEEeeecc
Confidence 3689999999999999999999998764331 11111211111 344433221 111 11222233322211 00
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEE
Q psy6807 142 HTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIY 221 (395)
Q Consensus 142 ~~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIy 221 (395)
+. |.....++...+..|+.+|+|-.+ +.+..+... . ..-++||
T Consensus 77 ~~-----------YGt~~~~i~~~~~~gk~~il~~~~---------------------~g~~~L~~~----~-~~~~~If 119 (183)
T PF00625_consen 77 NY-----------YGTSKSAIDKVLEEGKHCILDVDP---------------------EGVKQLKKA----G-FNPIVIF 119 (183)
T ss_dssp EE-----------EEEEHHHHHHHHHTTTEEEEEETH---------------------HHHHHHHHC----T-TTEEEEE
T ss_pred hh-----------hhhccchhhHhhhcCCcEEEEccH---------------------HHHHHHHhc----c-cCceEEE
Confidence 01 111123445566789999998543 111122221 1 1247899
Q ss_pred EECC-hHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 222 LDIP-VSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 222 Ld~p-~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
|.+| ++++.+|++.|+...+ .+..+++...-+. +.. ..+ .+.++.+ .+.++.++.|.++.
T Consensus 120 I~~~s~~~l~~~l~~r~~~~~-------~~i~~r~~~~~~~-~~~-~~~-fd~vi~n----~~le~~~~~l~~ii 180 (183)
T PF00625_consen 120 IKPPSPEVLKRRLRRRGDESE-------EEIEERLERAEKE-FEH-YNE-FDYVIVN----DDLEEAVKELKEII 180 (183)
T ss_dssp EEESSHHHHHHHHHTTTHCHH-------HHHHHHHHHHHHH-HGG-GGG-SSEEEEC----SSHHHHHHHHHHHH
T ss_pred EEccchHHHHHHHhccccccH-------HHHHHHHHHHHHH-HhH-hhc-CCEEEEC----cCHHHHHHHHHHHH
Confidence 9765 6888888888874322 2233333332221 111 111 5666643 37999999887754
No 151
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=98.47 E-value=2e-06 Score=89.39 Aligned_cols=169 Identities=18% Similarity=0.075 Sum_probs=103.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
+.+.+|+++|+.||||+++.+.|.+.++-.++....+.. |.. ..
T Consensus 38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~-----------------P~~-------------------eE 81 (493)
T TIGR03708 38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGR-----------------PSD-------------------EE 81 (493)
T ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCC-----------------CCH-------------------HH
Confidence 567899999999999999999999998877663221111 110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHH---hCCCCCCCCEEEEEE
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRF---TLPPLFKPHLVIYLD 223 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~---~~~~l~~PdlvIyLd 223 (395)
..+-+..|+... +=..|+.+|++||-|++...... .|.+++.++....+-... ++..-.-.-+.+||+
T Consensus 82 ~~~~flwRfw~~------lP~~G~I~IFdRSWY~~vlverv---~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLh 152 (493)
T TIGR03708 82 RERPPMWRFWRR------LPPKGKIGIFFGSWYTRPLIERL---EGRIDEAKLDSHIEDINRFERMLADDGALILKFWLH 152 (493)
T ss_pred hcCcHHHHHHHh------CCCCCeEEEEcCcccchhhHHHh---cCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
Confidence 011134454432 23579999999999999864443 378887776654443222 111111224789999
Q ss_pred CChHHHHHHHhhcCCccccCCCCCc------HHHHHHHHHHHHhhcccccCCCCcEEEEeCCCC
Q psy6807 224 IPVSKVKENVKKRNNPWEVNSPIFN------DKYLHEIEDLYKNNYLPQISDSSELLVYDWSDG 281 (395)
Q Consensus 224 ~p~e~~~eRI~~Rgr~~E~~~~~v~------~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~ 281 (395)
+|.++..+|+++|-....+.=+ ++ .+.......+|++.+..--.+.++..+|++++.
T Consensus 153 Isk~EQ~kRl~~r~~~P~k~WK-~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~addK 215 (493)
T TIGR03708 153 LSKKQQKERLKKLEKDPETRWR-VTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGEDD 215 (493)
T ss_pred CCHHHHHHHHHHHhcCCccccC-CCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCH
Confidence 9999999999998643332111 22 222344445555544432235689999985543
No 152
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.44 E-value=7.6e-06 Score=73.09 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=44.3
Q ss_pred CCCCEEEEEECChHHHHHHHh---hcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHH
Q psy6807 214 FKPHLVIYLDIPVSKVKENVK---KRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVED 290 (395)
Q Consensus 214 ~~PdlvIyLd~p~e~~~eRI~---~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~ed 290 (395)
..|+.+|.|.++|++++.|-. .|.|+.|.. -...-.+.+...+--.+. +-..+.+.++. +..+++|+-+.+
T Consensus 108 l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~---e~i~eHqe~nR~aA~a~A--~~~gatVkIV~-n~~~~~e~Aa~e 181 (189)
T COG2019 108 LNPDVIVLLEADPEEILERRLRDSRRDRDVESV---EEIREHQEMNRAAAMAYA--ILLGATVKIVE-NHEGDPEEAAEE 181 (189)
T ss_pred cCCCEEEEEeCCHHHHHHHHhcccccccccccH---HHHHHHHHHHHHHHHHHH--HHhCCeEEEEe-CCCCCHHHHHHH
Confidence 379999999999999988753 345666642 001111222222211111 12356777776 467889988888
Q ss_pred HHHh
Q psy6807 291 IERI 294 (395)
Q Consensus 291 Ie~l 294 (395)
|-.+
T Consensus 182 iv~~ 185 (189)
T COG2019 182 IVEL 185 (189)
T ss_pred HHHH
Confidence 8664
No 153
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.42 E-value=4.7e-06 Score=78.58 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=32.4
Q ss_pred hHHHHHHHHhc--cCCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 56 TLMEDTEDRFN--QNSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 56 ~~~~~~~~~~~--~~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
.+++++..... .++.+|+|.|++||||||+++.|+..+...
T Consensus 18 ~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 18 PLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 35566665543 456799999999999999999999988754
No 154
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=98.42 E-value=5e-06 Score=80.09 Aligned_cols=182 Identities=16% Similarity=0.180 Sum_probs=105.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
.+-+|+++|+.||||+.+.+.|.+.++-.++..-+... |.. ..+
T Consensus 55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~-----------------Pt~-------------------eE~ 98 (264)
T TIGR03709 55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKA-----------------PSA-------------------EEL 98 (264)
T ss_pred CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCC-----------------CCH-------------------HHH
Confidence 37799999999999999999999988776663221111 110 001
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHH---hCCCCCCCCEEEEEEC
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRF---TLPPLFKPHLVIYLDI 224 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~---~~~~l~~PdlvIyLd~ 224 (395)
.+-+..|+... +=..|+..|++||-|++.+-... .|.+.+.++....+-... ++..-.-.-+.+||++
T Consensus 99 ~~p~lWRfw~~------lP~~G~i~IF~RSWY~~vl~~rv---~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhI 169 (264)
T TIGR03709 99 DHDFLWRIHKA------LPERGEIGIFNRSHYEDVLVVRV---HGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHI 169 (264)
T ss_pred cCchHHHHHHh------CCCCCeEEEEcCccccchhhhhh---cCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeC
Confidence 11123344332 23579999999999999764433 377877776654443221 1111112247899999
Q ss_pred ChHHHHHHHhhcCCccccCCCCCc-HH-----HHHHHHHHHHhhcccccCCCCcEEEEeCCCCCC-----hhHHHHHHHH
Q psy6807 225 PVSKVKENVKKRNNPWEVNSPIFN-DK-----YLHEIEDLYKNNYLPQISDSSELLVYDWSDGGD-----PEVVVEDIER 293 (395)
Q Consensus 225 p~e~~~eRI~~Rgr~~E~~~~~v~-~~-----yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~-----~e~V~edIe~ 293 (395)
|.++..+|+++|-....+.= .++ .+ .......+|++.+..--...++..+|++++..- .+.|++.|+.
T Consensus 170 sk~eQ~kRl~~r~~~p~k~W-k~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l~~ 248 (264)
T TIGR03709 170 SKEEQKKRFLARLDDPTKNW-KFSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDALES 248 (264)
T ss_pred CHHHHHHHHHHHhcCCcccc-cCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999998853222210 122 11 223344445444332223468899998544332 3344455554
Q ss_pred hh
Q psy6807 294 ID 295 (395)
Q Consensus 294 l~ 295 (395)
++
T Consensus 249 ~~ 250 (264)
T TIGR03709 249 LD 250 (264)
T ss_pred cC
Confidence 43
No 155
>PLN02772 guanylate kinase
Probab=98.41 E-value=6e-06 Score=83.43 Aligned_cols=182 Identities=10% Similarity=0.113 Sum_probs=93.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccC-CCCcccccccc---CCCccccchhhhhhhhhhhhhhhhhcCCCCCcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIAL-PPANMDMFYKR---GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFH 142 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~-~e~~~d~~~~~---~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~ 142 (395)
...++|+|+||+|||||||++.|.+.+...+. ....+.+.-.. .|.++.-... .+.......+.|.+-.+
T Consensus 133 ~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~---eeFe~~i~~g~FlE~~e--- 206 (398)
T PLN02772 133 NAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTER---SVMEKEIKDGKFLEFAS--- 206 (398)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCH---HHHHHHHHhCccceeee---
Confidence 35679999999999999999999987643221 11112211111 2222210000 00111122223322211
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEE
Q psy6807 143 TIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYL 222 (395)
Q Consensus 143 ~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyL 222 (395)
+...+|..-.+++...++.|+.+|+|-.+. ....+... .+.+-+++.+
T Consensus 207 -------~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~q---------------------Gar~Lr~~----~l~~v~IFI~ 254 (398)
T PLN02772 207 -------VHGNLYGTSIEAVEVVTDSGKRCILDIDVQ---------------------GARSVRAS----SLEAIFIFIC 254 (398)
T ss_pred -------ecCccccccHHHHHHHHHhCCcEEEeCCHH---------------------HHHHHHHh----cCCeEEEEEe
Confidence 122344444566677788999999984331 11112221 1233334444
Q ss_pred ECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhhc
Q psy6807 223 DIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFD 297 (395)
Q Consensus 223 d~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f~ 297 (395)
..+.+++.+|+..|+.+.+. +..+++..+..+.-........++++++ . +.++..+++..+-+-
T Consensus 255 PPSlEeLe~RL~~RGteseE-------~I~kRL~~A~~Ei~~~~~~~~fD~vIvN---D-dLe~A~~~L~~iL~~ 318 (398)
T PLN02772 255 PPSMEELEKRLRARGTETEE-------QIQKRLRNAEAELEQGKSSGIFDHILYN---D-NLEECYKNLKKLLGL 318 (398)
T ss_pred CCCHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHHHhhccccCCCCEEEEC---C-CHHHHHHHHHHHHhh
Confidence 45689999999999976432 2334454432221000001134566653 3 888888888887653
No 156
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.40 E-value=3.9e-06 Score=88.54 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=40.3
Q ss_pred CCEEEEEECChHHHHHH-----HhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEE
Q psy6807 216 PHLVIYLDIPVSKVKEN-----VKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVY 276 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eR-----I~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~ 276 (395)
.|+.|||++|.+.++.| +..||+..|. +-..|.+.+...|+++..|. .+.+++++.
T Consensus 177 lDlkIFVDtdvDirL~RRI~RD~~eRGrs~Es----Vi~q~~~~VkP~y~~FIeP~-kk~ADIII~ 237 (656)
T PLN02318 177 LDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEE----IIHQISETVYPMYKAFIEPD-LQTAHIKIV 237 (656)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHHhCCCHHH----HHHHHHHhhcchHHHHhCcc-hhcceEEEe
Confidence 48999999886665433 3456777665 34677788899999988875 346787764
No 157
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.36 E-value=7.7e-07 Score=80.94 Aligned_cols=25 Identities=44% Similarity=0.820 Sum_probs=22.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+|+|.|++||||||+|+.|++.++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999853
No 158
>PLN02348 phosphoribulokinase
Probab=98.34 E-value=6.7e-07 Score=90.24 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=27.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
++..+|.|.|.+||||||+++.|++.|+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~ 76 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGA 76 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 456799999999999999999999999854
No 159
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.28 E-value=5.6e-06 Score=73.55 Aligned_cols=171 Identities=16% Similarity=0.243 Sum_probs=96.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcccc-CCCCcccccccc-----CCCccccchhhhhhhhhhhhhhhhhcCCCC-C
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIA-LPPANMDMFYKR-----GDFDWRSLDAEWSNENLKSYDEKTFCKDPK-H 140 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~-~~e~~~d~~~~~-----~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~-~ 140 (395)
.+++|+|.||+|+||-|+...++..+...- + ..-+.++. .|.+-..+. ..+|.+-.. .
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~---~fvrRvITRpa~ag~EdH~avs------------~~eF~~~a~~g 68 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRL---HFVRRVITRPADAGGEDHDALS------------EAEFNTRAGQG 68 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCce---EEEEEEecccCCCCcccccccC------------HHHHHHHhhcC
Confidence 478999999999999999999998875431 1 00111221 112222221 122222111 0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEE
Q psy6807 141 FHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVI 220 (395)
Q Consensus 141 ~~~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvI 220 (395)
..+...|.+ ..+|.-- ..+...+..|..||...|= .++.. ....| .--++|
T Consensus 69 ~FAlsWqAh--GL~Ygip-~eId~wl~~G~vvl~NgSR-------------a~Lp~-arrry------------~~Llvv 119 (192)
T COG3709 69 AFALSWQAH--GLSYGIP-AEIDLWLAAGDVVLVNGSR-------------AVLPQ-ARRRY------------PQLLVV 119 (192)
T ss_pred ceeEEehhc--CccccCc-hhHHHHHhCCCEEEEeccH-------------hhhHH-HHHhh------------hcceeE
Confidence 112223322 1112111 1234457789999987542 11111 01111 123689
Q ss_pred EEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhh
Q psy6807 221 YLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDF 296 (395)
Q Consensus 221 yLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f 296 (395)
-|.++|+++.+|+.+|||+-. .+-+.++...-.. .....+++++| |+|..+...+..-.+.-
T Consensus 120 ~ita~p~VLaqRL~~RGREs~-------eeI~aRL~R~a~~-----~~~~~dv~~id--NsG~l~~ag~~ll~~l~ 181 (192)
T COG3709 120 CITASPEVLAQRLAERGRESR-------EEILARLARAARY-----TAGPGDVTTID--NSGELEDAGERLLALLH 181 (192)
T ss_pred EEecCHHHHHHHHHHhccCCH-------HHHHHHHHhhccc-----ccCCCCeEEEc--CCCcHHHHHHHHHHHHH
Confidence 999999999999999998643 3444555553221 22367999999 99999988877765444
No 160
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.24 E-value=5.4e-07 Score=84.73 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+|+|.|++||||||+|+.|+..+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999885
No 161
>KOG3062|consensus
Probab=98.23 E-value=4.3e-06 Score=77.84 Aligned_cols=173 Identities=20% Similarity=0.250 Sum_probs=103.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
+.+|+|+|.|+|||||.|+.|++.|....-.- ...+++ ....+. ...-|.+..
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~---~v~ii~deslg~~---------------~ns~y~~s~-------- 54 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQ---SVRIIDDESLGIE---------------KNSNYGDSQ-------- 54 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccc---eEEEechhhcCCC---------------CcccccccH--------
Confidence 35899999999999999999999886554210 111222 100000 001111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChH
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVS 227 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e 227 (395)
-. -..|-. ...++...|++|..||+|. .+||.+--|+.|.+.+... --..||+..+|.|
T Consensus 55 ~E-K~lRg~-L~S~v~R~Lsk~~iVI~Ds--------------lNyIKGfRYeLyC~ak~~~-----tt~Cvv~t~vp~e 113 (281)
T KOG3062|consen 55 AE-KALRGK-LRSAVDRSLSKGDIVIVDS--------------LNYIKGFRYELYCEAKAAR-----TTYCVVHTAVPQE 113 (281)
T ss_pred HH-HHHHHH-HHHHHHhhcccCcEEEEec--------------ccccccceeeeeeehhccc-----eeEEEEEecCCHH
Confidence 00 011211 1234455678999999993 2555555555555544322 2478999999999
Q ss_pred HHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccC--CCCcEEEEeCCCCCChhHHHHHHHHhhhc
Q psy6807 228 KVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQIS--DSSELLVYDWSDGGDPEVVVEDIERIDFD 297 (395)
Q Consensus 228 ~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~--~~~~vli~D~t~~~~~e~V~edIe~l~f~ 297 (395)
.|.+--.+|..+.|.. .+.+-++.+...|++ |+-+ -.+++.++= ......=.++|....|+
T Consensus 114 ~~r~~Ns~~~~p~e~g---y~~e~le~L~~RyEe---P~s~NRWDsPLf~ll---~~~~~~~~~~I~~al~~ 176 (281)
T KOG3062|consen 114 LCREWNSEREDPGEDG---YDDELLEALVQRYEE---PNSRNRWDSPLFTLL---PDVITLPIDDILKALFE 176 (281)
T ss_pred HHHHhcccCCCCCCCC---CCHHHHHHHHHHhhC---CCccccccCcceEEe---cccCCCcHHHHHHHHhc
Confidence 9999988888887743 678889999988875 4322 235555542 12233335666666675
No 162
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.22 E-value=1.7e-05 Score=87.82 Aligned_cols=32 Identities=38% Similarity=0.677 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
..++|+|+|++||||||+|+.||++|++.+++
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~ 64 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLN 64 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 34699999999999999999999999998873
No 163
>PRK06761 hypothetical protein; Provisional
Probab=98.20 E-value=1.8e-05 Score=77.09 Aligned_cols=82 Identities=17% Similarity=0.273 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECC-hHH
Q psy6807 150 MLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIP-VSK 228 (395)
Q Consensus 150 ~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p-~e~ 228 (395)
.+..|..++..+. +...+..++|.|....-++ ..|...+.-...-.+++.++.+.. ..+ .-++|||+.+ ++.
T Consensus 123 R~~~rw~~f~~a~---l~~dq~~ifE~s~~~~pl~-~lm~~~~~~~~~i~~y~~~l~~~i-~~l--~p~l~yl~~~dv~~ 195 (282)
T PRK06761 123 LITDRWNDFAEIA---LEENKVYIFECCFIQNPVT-ILMIKYGAQKEKITNYVMKLAKII-ENL--NPMLFYLEQDDVEF 195 (282)
T ss_pred HHHHHHHHHHHHh---hccCceEEEeccCcCCcHH-HHHHHcCCCHHHHHHHHHHHHHHH-hcc--CcEEEEecccCHHH
Confidence 3455666655443 4578889999988777553 334333433333344555555443 322 2589999998 999
Q ss_pred HHHH-HhhcCC
Q psy6807 229 VKEN-VKKRNN 238 (395)
Q Consensus 229 ~~eR-I~~Rgr 238 (395)
+.++ +.+|+.
T Consensus 196 ~~~~~~~eR~~ 206 (282)
T PRK06761 196 SFRKALKERNP 206 (282)
T ss_pred HHHHHHHhcch
Confidence 9998 456753
No 164
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.17 E-value=2.7e-05 Score=76.36 Aligned_cols=191 Identities=14% Similarity=0.192 Sum_probs=93.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcccc-CCCCccccccccCCCccccchhhhhhhhh-hhhhhhhhcC-CCC----
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIA-LPPANMDMFYKRGDFDWRSLDAEWSNENL-KSYDEKTFCK-DPK---- 139 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~-~~e~~~d~~~~~~g~d~~~l~~~l~p~~~-~~~~~~~f~~-dp~---- 139 (395)
+.+.+|+|.|++||||||+|..||++||... +..+.+...... ..-+++. |.-. ..+..-...+ .|.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~--~~~~e~~----p~L~~S~Y~a~~~l~~~~~~~~~ 163 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRK--IISKELL----PTLHESSYTAWKSLRRPPPPEPP 163 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHH--hcchhhc----cchhhhhhhhhhcccCCCCCchh
Confidence 4678999999999999999999999999874 332222110000 0000000 1110 0111111111 111
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCC-CE
Q psy6807 140 HFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKP-HL 218 (395)
Q Consensus 140 ~~~~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~P-dl 218 (395)
....|..|...+...... .+...+..|+.+|+|.... .+. +....... .| .+
T Consensus 164 ~l~g~~~~~~~v~~gi~~---~I~~~~~~g~s~IiEGvhl---------------~P~-------~i~~~~~~--~~~~i 216 (301)
T PRK04220 164 VIYGFERHVEPVSVGVEA---VIERALKEGISVIIEGVHI---------------VPG-------FIKEKYLE--NPNVF 216 (301)
T ss_pred hhhhHHHHHHHHHHHHHH---HHHHHHHhCCcEEEecCCC---------------CHH-------HHHHhhhc--CCCEE
Confidence 123355555444433222 3345567899999996431 111 00100011 12 24
Q ss_pred EEEEEC-ChHHHHHHHhhcCCccccCCCCCcHHHHHHHHH--HHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 219 VIYLDI-PVSKVKENVKKRNNPWEVNSPIFNDKYLHEIED--LYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 219 vIyLd~-p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~--~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
.++|.+ +.+...+|...|++.. +++ ...|+..++. ..+++......+ ..+-++| +.+++..++.|-+..
T Consensus 217 ~~~l~i~~ee~h~~RF~~R~~~~--~r~--~~~y~~~~~~ir~iq~~l~~~a~~-~~ip~I~---n~~i~~s~~~~~~~i 288 (301)
T PRK04220 217 MFVLTLSDEEAHKARFYARARVS--RRP--AERYLKNFEIIREINDYIVEKAKK-HGVPVIE---NISIEETVDKILEII 288 (301)
T ss_pred EEEEEECCHHHHHHHHHHHHhhh--CCc--hhhHHHHHHHHHHHHHHHHHHHHH-hCCCeec---CccHHHHHHHHHHHH
Confidence 455554 5588899988887533 111 2334333333 233334433332 2344454 567777777766655
Q ss_pred hcc
Q psy6807 296 FDH 298 (395)
Q Consensus 296 f~~ 298 (395)
++.
T Consensus 289 ~~~ 291 (301)
T PRK04220 289 TER 291 (301)
T ss_pred HHH
Confidence 543
No 165
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.15 E-value=1.6e-05 Score=81.14 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPAN 102 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~ 102 (395)
..+.|+|.|++|||||||++.||+.+|...++|..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~ 252 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYG 252 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeecc
Confidence 46789999999999999999999999998887664
No 166
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.13 E-value=1.9e-05 Score=72.79 Aligned_cols=27 Identities=26% Similarity=0.636 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+++.+|++.|++||||||++..+.+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~ 39 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEF 39 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence 578999999999999999999999987
No 167
>PRK07429 phosphoribulokinase; Provisional
Probab=98.12 E-value=1.7e-05 Score=78.90 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=26.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
++..+|+|.|++||||||+++.|++.++..
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~ 35 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEE 35 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccC
Confidence 456799999999999999999999998843
No 168
>PLN02165 adenylate isopentenyltransferase
Probab=98.11 E-value=3e-05 Score=76.97 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=32.9
Q ss_pred hccCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCc
Q psy6807 65 FNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPAN 102 (395)
Q Consensus 65 ~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~ 102 (395)
+++++++|+|.|++||||||++..||+.++...++.++
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs 76 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDK 76 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCCh
Confidence 45678899999999999999999999999987775543
No 169
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.11 E-value=3.8e-05 Score=79.14 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
.+.+|++.|++||||||++..||+.+|+..
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ 283 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITR 283 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 578999999999999999999999999873
No 170
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=98.05 E-value=3.4e-06 Score=79.71 Aligned_cols=167 Identities=17% Similarity=0.117 Sum_probs=87.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
.+-+|+|+|+.||||+.+++.|.+.++-.++..-+... |.. ++ .
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~-----------------pt~------eE-------------~ 73 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGK-----------------PTD------EE-------------L 73 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS-------------------H------HH-------------H
T ss_pred CcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCC-----------------CCh------hH-------------c
Confidence 34789999999999999999999877665542211110 110 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCC---CCCCEEEEEEC
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPL---FKPHLVIYLDI 224 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l---~~PdlvIyLd~ 224 (395)
.+-+..|+... +=..|+.+|++||-|++.+-... .|.+++.++....+-....-..+ .-.-+.+||.+
T Consensus 74 ~~p~lwRfw~~------lP~~G~I~if~rSWY~~~l~~rv---~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhI 144 (228)
T PF03976_consen 74 RRPFLWRFWRA------LPARGQIGIFDRSWYEDVLVERV---EGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHI 144 (228)
T ss_dssp TS-TTHHHHTT------S--TT-EEEEES-GGGGGTHHHH---TTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE-
T ss_pred CCCcHHHHHHh------CCCCCEEEEEecchhhHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEe
Confidence 00122344332 23579999999999999764432 47777776665444332211111 11236899999
Q ss_pred ChHHHHHHHhhcCCccccCCCCCcHH------HHHHHHHHHHhhcccccCCCCcEEEEeCCC
Q psy6807 225 PVSKVKENVKKRNNPWEVNSPIFNDK------YLHEIEDLYKNNYLPQISDSSELLVYDWSD 280 (395)
Q Consensus 225 p~e~~~eRI~~Rgr~~E~~~~~v~~~------yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~ 280 (395)
|.++..+|+++|-...... -.++.. .......+|++.+..--...++..+|++++
T Consensus 145 sk~eQ~kRl~~~~~~p~~~-wkv~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~d 205 (228)
T PF03976_consen 145 SKKEQKKRLKEREEDPLKR-WKVSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADD 205 (228)
T ss_dssp -HHHHHHHHHHHHHSCCCG-GG--HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SS
T ss_pred CHHHHHHHHHHHhcCcccc-ccCCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCC
Confidence 9999999999884221111 012221 112333344443322123468888998443
No 171
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.05 E-value=2.9e-05 Score=75.97 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=24.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+.+|+|.|++||||||+++.|+..+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999999988775
No 172
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=98.04 E-value=5.7e-05 Score=78.75 Aligned_cols=171 Identities=15% Similarity=0.094 Sum_probs=103.4
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHH
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIA 145 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~ 145 (395)
.+.+.+|+++|++||||....+.|.+.++-.++...++.. |.. .
T Consensus 296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~-----------------Pt~-------------------~ 339 (493)
T TIGR03708 296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAA-----------------PTD-------------------E 339 (493)
T ss_pred CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCC-----------------cCH-------------------H
Confidence 4567899999999999999999999988766653221111 110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHh---CCCCCCCCEEEEE
Q psy6807 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFT---LPPLFKPHLVIYL 222 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~---~~~l~~PdlvIyL 222 (395)
...+-+..|+.+. +=..|..+|.|||-|.+.+-... .|.+++.++...++-.... +..-.-.-+.+||
T Consensus 340 E~~~~~lwRf~~~------lP~~G~i~iFdRSwY~~vlverv---~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~L 410 (493)
T TIGR03708 340 EKAQHYLWRFWRH------IPRRGRITIFDRSWYGRVLVERV---EGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWL 410 (493)
T ss_pred HHcCcHHHHHHHh------CCCCCeEEEEcCCccCCcceeee---cCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Confidence 0011234455442 23579999999999998753322 3778877766444333221 1111223478999
Q ss_pred ECChHHHHHHHhhcCCccccCCCCCcH------HHHHHHHHHHHhhcccccCCCCcEEEEeCCCCC
Q psy6807 223 DIPVSKVKENVKKRNNPWEVNSPIFND------KYLHEIEDLYKNNYLPQISDSSELLVYDWSDGG 282 (395)
Q Consensus 223 d~p~e~~~eRI~~Rgr~~E~~~~~v~~------~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~ 282 (395)
++|.++..+|+++|-...++.=+ ++. +.......+|++.+..--...++..+|.+++..
T Consensus 411 hIsk~EQ~~R~~~r~~~p~k~WK-~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~dK~ 475 (493)
T TIGR03708 411 HIDKEEQLRRFEERENTPFKRYK-ITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEANDKR 475 (493)
T ss_pred EcCHHHHHHHHHHHhcCCccCCc-CCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCChH
Confidence 99999999999998643333211 332 223344445555444322346889998854433
No 173
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.02 E-value=2.5e-05 Score=75.89 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+|+|.|++||||||+++.|+..++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~ 25 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGS 25 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5899999999999999999988753
No 174
>COG4639 Predicted kinase [General function prediction only]
Probab=98.02 E-value=9.6e-05 Score=65.40 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=41.2
Q ss_pred HHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHHHHHHhhcCC
Q psy6807 162 LAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNN 238 (395)
Q Consensus 162 l~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~~eRI~~Rgr 238 (395)
++..+.+|...|+|-+ .++......|.++.... .--..+|++|+|.+.|.+|.+.|.+
T Consensus 62 l~qrl~~Gk~tiidAt---------------n~rr~~r~~l~~La~~y----~~~~~~ivfdtp~~~c~aRNk~~~R 119 (168)
T COG4639 62 LEQRLRRGKFTIIDAT---------------NLRREDRRKLIDLAKAY----GYKIYAIVFDTPLELCLARNKLRER 119 (168)
T ss_pred HHHHHHcCCeEEEEcc---------------cCCHHHHHHHHHHHHHh----CCeEEEEEEeCCHHHHHHHhhccch
Confidence 4455689999999943 34556666666665542 1235789999999999999886554
No 175
>COG3911 Predicted ATPase [General function prediction only]
Probab=98.00 E-value=4.8e-05 Score=66.80 Aligned_cols=147 Identities=17% Similarity=0.210 Sum_probs=85.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc---CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR---GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIA 145 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~---~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~ 145 (395)
.++++++|.||+|||||...|++. |...++|+..+....+ .|.++. +.|+. .
T Consensus 9 ~~~fIltGgpGaGKTtLL~aLa~~-Gfatvee~~r~ii~~es~~gg~~lP-------------------W~D~~-----a 63 (183)
T COG3911 9 HKRFILTGGPGAGKTTLLAALARA-GFATVEEAGRDIIALESAQGGTALP-------------------WTDPG-----A 63 (183)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHc-CceeeccchhhHHHHHHhcCCCcCC-------------------ccChH-----H
Confidence 478999999999999999999985 8777777654322111 112222 33332 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHH-HHHHHHHHhCCCCCCCCEEEEEEC
Q psy6807 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKD-IYYEITRFTLPPLFKPHLVIYLDI 224 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~-~y~~~~~~~~~~l~~PdlvIyLd~ 224 (395)
+...++..++.|... ...+..|.+||++.....|..-+ .| .... ....+.+.. ..+--|||--
T Consensus 64 fael~~~~~l~q~r~-----~~~~~~vFfDR~~~da~a~l~~l--sg----a~la~~v~~~~~~~-----~Yn~rVfl~q 127 (183)
T COG3911 64 FAELVGLQRLRQTRS-----AAVGGRVFFDRGPPDALAYLRFL--SG----ALLADEVATIVREG-----RYNPRVFLVQ 127 (183)
T ss_pred HHHHHHHHHHHHhhc-----ccccCceeeccCcHHHHHHHHHh--cc----cHHHHHHHHHHHhc-----CCCCcEEecC
Confidence 222233344444322 24678899999997776655422 12 2111 112222221 2344677777
Q ss_pred ChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHh
Q psy6807 225 PVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKN 261 (395)
Q Consensus 225 p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~ 261 (395)
|...+.+--..|....+.. ..+.+.+..+|..
T Consensus 128 p~~~iyqqde~Rk~tldeA-----v~~~e~lv~aYt~ 159 (183)
T COG3911 128 PWPFIYQQDEERKITLDEA-----VAFYEVLVAAYTE 159 (183)
T ss_pred CccccccchhhcccCHHHH-----HHHHHHHHHHHHh
Confidence 8888877777776554442 4555677777865
No 176
>PHA00729 NTP-binding motif containing protein
Probab=97.99 E-value=0.0001 Score=69.54 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHhc-cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 60 DTEDRFN-QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 60 ~~~~~~~-~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
++...|. .....|+|+|+||+||||+|..|+++++
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444442 2345799999999999999999999887
No 177
>PRK05439 pantothenate kinase; Provisional
Probab=97.98 E-value=3e-05 Score=76.48 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=25.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..+.+|+|.|++||||||+|+.|++.++.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35679999999999999999999998753
No 178
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.93 E-value=1.1e-05 Score=70.21 Aligned_cols=25 Identities=40% Similarity=0.735 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+|+|.|++||||||+++.|++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCc
Confidence 4899999999999999999998654
No 179
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.93 E-value=0.0004 Score=62.14 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=24.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhc-cccCC
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELD-MIALP 99 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~-~~~~~ 99 (395)
+|+=++.+||||||++..|++-+| +.++-
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~wgHvQ 30 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGEWGHVQ 30 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCCCCccc
Confidence 356678999999999999999999 77763
No 180
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.85 E-value=0.00045 Score=67.03 Aligned_cols=127 Identities=18% Similarity=0.184 Sum_probs=73.0
Q ss_pred CCEEEEEECChHHHHHHHhhcCC--ccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 216 PHLVIYLDIPVSKVKENVKKRNN--PWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eRI~~Rgr--~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
.-.+|||+|+.+++.+|-++-.| |.... ...++.++..- ..+..+++.+++ +|| |..-++.++.+.|..
T Consensus 82 ~~~ilFLdA~d~~LirRy~eTRR~HPL~~~-----~~~le~I~~Er--~~L~~lr~~Ad~-vID-Ts~l~~~~Lr~~i~~ 152 (284)
T PF03668_consen 82 DVRILFLDASDEVLIRRYSETRRRHPLSSD-----GSLLEAIEKER--ELLEPLRERADL-VID-TSNLSVHQLRERIRE 152 (284)
T ss_pred ceEEEEEECChHHHHHHHHhccCCCCCCCC-----CCcHHHHHHHH--HHHHHHHHhCCE-EEE-CCCCCHHHHHHHHHH
Confidence 45799999999999999876443 33321 11234443321 123334556776 559 456688888888877
Q ss_pred hhhccccccccccccccccchhHHHHHhhhhhccchhHhh--hhhccCCCCCCce-eecchhhhHHHHHHH
Q psy6807 294 IDFDHYDHFSNKMREWRQLTTKEWNNLRMLYADEKSDLMT--AFNTVERYDCPEL-AYTGDDMMEIEEKLS 361 (395)
Q Consensus 294 l~f~~~~~~~~~~~~w~~~~~~~~~~~r~~~~~~~~~~~~--~~~~~~~~~~~e~-~~~~~~~~~~~~~~~ 361 (395)
.-... .... ..-.-.++...+....| -+-|.+ ++- .|.| +||| ..++.|.+..-+++.
T Consensus 153 ~~~~~---~~~~----l~v~i~SFGfK~GiP~d-AD~VfDvRfLp-NP~y-~~~Lr~lTG~D~~V~~yv~~ 213 (284)
T PF03668_consen 153 RFGGD---KESR----LTVTIQSFGFKYGIPPD-ADLVFDVRFLP-NPYY-VPELRPLTGLDKPVQDYVLS 213 (284)
T ss_pred HhccC---CCCc----eEEEEEEeccccCCCCC-CCEEEEcCcCC-CCCC-ChhhhhcCCCChHHHHHHHc
Confidence 42211 0000 11223455555555555 333332 444 7787 9999 677877776666654
No 181
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.84 E-value=0.00024 Score=67.52 Aligned_cols=187 Identities=18% Similarity=0.200 Sum_probs=97.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc--CCCccccchhhhhhhh-hhhhhhhhhcCCCCCcc-
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR--GDFDWRSLDAEWSNEN-LKSYDEKTFCKDPKHFH- 142 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~--~g~d~~~l~~~l~p~~-~~~~~~~~f~~dp~~~~- 142 (395)
+++.+|.|-|.+|+||||+|..||.+||...+-+- |. +.+ .+.--+++. |.. ..+|+.-+++.+|.+.+
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visT--D~-IREvlR~ii~~~l~----PtLh~Ssy~Awkalr~~~~~~p 159 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVIST--DS-IREVLRKIISPELL----PTLHTSSYDAWKALRDPTDENP 159 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcCCceeecc--hH-HHHHHHHhCCHHhc----chhhHhHHHHHHHhcCCCCCcc
Confidence 56889999999999999999999999999876322 21 111 111111111 211 23456667777776543
Q ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEE
Q psy6807 143 ---TIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLV 219 (395)
Q Consensus 143 ---~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~Pdlv 219 (395)
.|.-|.....--.... +...+..|..+|+|.-- +--|++++..+ ....+.
T Consensus 160 iiaGF~dqa~~V~~GI~~V---I~RAi~eG~~lIIEGvH----------lVPg~i~~~~~--------------~~n~~~ 212 (299)
T COG2074 160 IIAGFEDQASAVMVGIEAV---IERAIEEGEDLIIEGVH----------LVPGLIKEEAL--------------GNNVFM 212 (299)
T ss_pred hhhhHHHHhHHHHHHHHHH---HHHHHhcCcceEEEeee----------eccccccHhhh--------------ccceEE
Confidence 3555555443332222 33457789999999532 11244443211 022344
Q ss_pred EEEEC-ChHHHHHHHhhcCCccccCCC-CCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHH
Q psy6807 220 IYLDI-PVSKVKENVKKRNNPWEVNSP-IFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIE 292 (395)
Q Consensus 220 IyLd~-p~e~~~eRI~~Rgr~~E~~~~-~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe 292 (395)
+||-+ +.++-..|.-+|.+..-.+++ .--.+|++.+..... |+-+.+..-.+-+++ +.+.++.+..|-
T Consensus 213 ~~l~i~dee~Hr~RF~~R~~~t~~~rp~~Ryl~yf~EiR~I~D--yl~~~Are~gVPvI~---n~di~etv~~il 282 (299)
T COG2074 213 FMLYIADEELHRERFYDRIRYTHASRPGGRYLEYFKEIRTIHD--YLVERAREHGVPVIE---NDDIDETVDRIL 282 (299)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH--HHHHHHHhcCCCeec---cccHHHHHHHHH
Confidence 55555 555557777777542211111 012566666555332 222223333455555 334444444443
No 182
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.84 E-value=8.6e-05 Score=67.47 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=24.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
+|+|.|..|||++|+|+.||++||.+++.
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d 29 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYD 29 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCC
Confidence 69999999999999999999999999874
No 183
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00014 Score=69.01 Aligned_cols=167 Identities=14% Similarity=0.122 Sum_probs=102.8
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHH
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIA 145 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~ 145 (395)
+...-+|+++|.+++||.-..+.+.+.|+-.......+ ..|.+ .
T Consensus 71 ~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval--------------------------------~aPt~----~ 114 (270)
T COG2326 71 TGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVAL--------------------------------PAPTD----R 114 (270)
T ss_pred cCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeec--------------------------------CCCCh----H
Confidence 45567899999999999999999999887654422111 11211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHH---HHhCCCCCCCCEEEEE
Q psy6807 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEIT---RFTLPPLFKPHLVIYL 222 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~---~~~~~~l~~PdlvIyL 222 (395)
....-|.+|+.+ |+=+.|..||.|||-|...--... +|.+++.++..+.+.. ..++.+-.---+.+||
T Consensus 115 E~~qwY~qRy~~------~lPa~GeiviFdRSwYnr~gVeRV---mGfct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl 185 (270)
T COG2326 115 ERGQWYFQRYVA------HLPAAGEIVIFDRSWYNRAGVERV---MGFCTPKQYKRFLREIPEFERMLVESGIILVKFWL 185 (270)
T ss_pred hhccHHHHHHHH------hCCCCCeEEEechhhccccCeeec---cccCCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEE
Confidence 111124455433 445689999999999887532222 4888888665544432 2222222222467899
Q ss_pred ECChHHHHHHHhhcCCccccCCCC-----CcHHHHHHHHHHHHhhcccccCCCCcEEEEe
Q psy6807 223 DIPVSKVKENVKKRNNPWEVNSPI-----FNDKYLHEIEDLYKNNYLPQISDSSELLVYD 277 (395)
Q Consensus 223 d~p~e~~~eRI~~Rgr~~E~~~~~-----v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D 277 (395)
+++.|+.++|..+|-...+++=+. -+.+.......+|.+.+..--...++..+|-
T Consensus 186 ~Is~eeQ~~RF~~R~~dP~K~WKlSp~D~~~r~~WddYt~A~~em~~~T~T~~APW~vV~ 245 (270)
T COG2326 186 SISREEQLERFLERRNDPLKQWKLSPMDLESRDRWDDYTKAKDEMFARTSTPEAPWYVVP 245 (270)
T ss_pred eCCHHHHHHHHHHHhcCHHhccCCCHHHHHHHHhHHHHHHHHHHHHhccCCCCCCeEEEe
Confidence 999999999999986433332111 1234445555677776654334567888876
No 184
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.78 E-value=0.00031 Score=66.21 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=26.2
Q ss_pred HHhccCCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 63 DRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 63 ~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
+.++....+|++.|.||.|||++|+.|+.-|.+..+.
T Consensus 6 ~~~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~ 42 (222)
T PF01591_consen 6 RLFHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVK 42 (222)
T ss_dssp -------EEEEEESSTTSSHHHHHHHHHHHHHHTT--
T ss_pred ccCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence 3444556789999999999999999999999877664
No 185
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.65 E-value=0.00024 Score=70.69 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=30.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPA 101 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~ 101 (395)
++.|+|.|++|||||||++.|++.++..+++|.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~ 194 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEY 194 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeeh
Confidence 468999999999999999999999999888776
No 186
>KOG3078|consensus
Probab=97.64 E-value=0.0001 Score=69.60 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPP 100 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e 100 (395)
+..-.++.|++||||+|++..|++.+++.++..
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~t 46 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHIST 46 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchh
Confidence 356789999999999999999999999998743
No 187
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.60 E-value=0.00071 Score=63.09 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=68.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCC--CCcccHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDP--KHFHTIA 145 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp--~~~~~~~ 145 (395)
+++++|.|++|+|||.+|-.||+++|.+.+..+.+. .|.+ .....+.....+ +... ..|+.+- .++.
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq-~y~~l~v~Sgrp~~~el-----~~~~-RiyL~~r~l~~G~--- 70 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQ-CYPELSVGSGRPTPSEL-----KGTR-RIYLDDRPLSDGI--- 70 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGG-G-GGGTTTTT---SGGG-----TT-E-EEES----GGG-S---
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEEEeccee-cccccccccCCCCHHHH-----cccc-eeeeccccccCCC---
Confidence 468999999999999999999999999988544332 2333 222333222222 1111 1222221 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECC
Q psy6807 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIP 225 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p 225 (395)
.-...+..|+...++ . +.+++++|+|..-.| ..+.+.+......+-.-.++++.++
T Consensus 71 i~a~ea~~~Li~~v~---~-~~~~~~~IlEGGSIS--------------------Ll~~m~~~~~w~~~f~w~i~rl~l~ 126 (233)
T PF01745_consen 71 INAEEAHERLISEVN---S-YSAHGGLILEGGSIS--------------------LLNCMAQDPYWSLDFRWHIRRLRLP 126 (233)
T ss_dssp --HHHHHHHHHHHHH---T-TTTSSEEEEEE--HH--------------------HHHHHHH-TTTSSSSEEEEEE----
T ss_pred cCHHHHHHHHHHHHH---h-ccccCceEEeCchHH--------------------HHHHHHhcccccCCCeEEEEEEECC
Confidence 111123333333222 2 245889999964322 2233333222212223467788876
Q ss_pred hHHH-HHHHhhcCC----ccccCCCCCcHHHHHHHHHHHHh
Q psy6807 226 VSKV-KENVKKRNN----PWEVNSPIFNDKYLHEIEDLYKN 261 (395)
Q Consensus 226 ~e~~-~eRI~~Rgr----~~E~~~~~v~~~yl~~l~~~Yk~ 261 (395)
.+.. +.|.++|-+ +.+. ..+.++.+...++.
T Consensus 127 d~~~f~~ra~~Rv~~ML~p~~~-----~~Sll~EL~~lW~~ 162 (233)
T PF01745_consen 127 DEEVFMARAKRRVRQMLRPDSS-----GPSLLEELVALWND 162 (233)
T ss_dssp -HHHHHHHHHHHHHHHHS--SS-----S--HHHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHHhcCCCCC-----CCcHHHHHHHHHhC
Confidence 5544 677776643 3222 35777888777653
No 188
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.59 E-value=5.4e-05 Score=57.92 Aligned_cols=23 Identities=48% Similarity=0.725 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q psy6807 71 IIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l 93 (395)
+|+|+|++||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 189
>KOG0707|consensus
Probab=97.53 E-value=0.0011 Score=62.33 Aligned_cols=181 Identities=15% Similarity=0.181 Sum_probs=92.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccc--cCCCCccccccc-c-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMI--ALPPANMDMFYK-R-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTI 144 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~--~~~e~~~d~~~~-~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~ 144 (395)
.+-|+++|++|+||+|+.++|-++++.. +....++..+-. + .|.+.. + ...+.|..+.+ .+.+
T Consensus 37 ~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~-----f-------s~~~~~~s~i~-~~~f 103 (231)
T KOG0707|consen 37 FKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYH-----F-------STTEEFLSMIK-NNEF 103 (231)
T ss_pred CceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcce-----e-------ccHHHHHHHhh-hhhh
Confidence 3789999999999999999999999852 211111111100 0 222211 0 01122222211 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEE-
Q psy6807 145 AFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLD- 223 (395)
Q Consensus 145 ~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd- 223 (395)
..-+.+....+...+++++.+-..|+..|+|=- .+|-.. +..-..--+.||+.
T Consensus 104 iE~a~~~gn~yGtsi~av~~~~~~gk~~ildId------------~qg~~~--------------i~~~~~~~i~i~~~p 157 (231)
T KOG0707|consen 104 IEFATFSGNKYGTSIAAVQRLMLSGKVCILDID------------LQGVQP--------------IRATSLDAIYIFIKP 157 (231)
T ss_pred hhhhhhhcccCCchHHHHHHHHhcCCcceeehh------------hcCcee--------------eecCCCceEEEEecC
Confidence 222223333333434555555667888887711 011100 00001112456655
Q ss_pred CChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhhcc
Q psy6807 224 IPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFDH 298 (395)
Q Consensus 224 ~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f~~ 298 (395)
.+...+.+|+++||-+.| .+.++++..+..+.-..+-+...++++++ ..+.|+....+..+.+++
T Consensus 158 ps~~~~e~rl~~rgte~~-------~~l~~r~~sa~~e~~~~~~~g~~d~~~~n---s~~lee~~kel~~~~~~~ 222 (231)
T KOG0707|consen 158 PSIKILEERLRARGTETE-------ESLLKRLKSAEEEFEILENSGSFDLVIVN---SDRLEEAYKELEIFISSD 222 (231)
T ss_pred CcchhHHHHhhccCcchH-------HHHHHHHHhhhhhhccccCCccccceecC---CCchhhhhhhhhhhhhHH
Confidence 566778899999975443 34456666555543322222235665553 377888888887777663
No 190
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.51 E-value=0.00076 Score=73.41 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
...+|++.|.+|+||||+++.|++.|+..++.
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~ 245 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQ 245 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCC
Confidence 34689999999999999999999999888774
No 191
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.42 E-value=0.00034 Score=69.07 Aligned_cols=35 Identities=37% Similarity=0.561 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPAN 102 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~ 102 (395)
+.++|+|.|++||||||+|..||++++...++.++
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 35799999999999999999999999988776554
No 192
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.40 E-value=0.0003 Score=61.06 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=31.6
Q ss_pred HHHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 57 LMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 57 ~~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
+..++.+.+ +.+.+|++.|..||||||+++.+++.+|..
T Consensus 11 l~~~l~~~l-~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 11 FGKAFAKPL-DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHHhC-CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 444444444 567899999999999999999999999875
No 193
>KOG3308|consensus
Probab=97.38 E-value=0.00034 Score=64.36 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcc-ccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDM-IAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~-~~~ 98 (395)
+..+|+|.|++.|||||||+.|+..++. ..+
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lI 34 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLI 34 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeee
Confidence 4568999999999999999999998864 445
No 194
>KOG0635|consensus
Probab=97.37 E-value=0.0011 Score=58.63 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=28.5
Q ss_pred hccCCeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 65 FNQNSKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 65 ~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
+.+++.+|.|+|.+||||||+|-.|.+.|--..
T Consensus 27 ~~qkGcviWiTGLSgSGKStlACaL~q~L~qrg 59 (207)
T KOG0635|consen 27 LKQKGCVIWITGLSGSGKSTLACALSQALLQRG 59 (207)
T ss_pred hcCCCcEEEEeccCCCCchhHHHHHHHHHHhcC
Confidence 357899999999999999999999998875443
No 195
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.33 E-value=0.00016 Score=60.74 Aligned_cols=27 Identities=33% Similarity=0.578 Sum_probs=24.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 72 IVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 72 I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
|.|.|++|+||||+++.+|+.++..++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~ 27 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFI 27 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccc
Confidence 689999999999999999999986654
No 196
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.24 E-value=0.00045 Score=59.14 Aligned_cols=42 Identities=21% Similarity=0.445 Sum_probs=29.3
Q ss_pred HHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhccc-cCCCC
Q psy6807 59 EDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMI-ALPPA 101 (395)
Q Consensus 59 ~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~-~~~e~ 101 (395)
..+.+.+ +.+.+|++.|..||||||+++.+++.+|.. .+..|
T Consensus 6 ~~l~~~l-~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SP 48 (123)
T PF02367_consen 6 KKLAQIL-KPGDVILLSGDLGAGKTTFVRGLARALGIDEEVTSP 48 (123)
T ss_dssp HHHHHHH-SS-EEEEEEESTTSSHHHHHHHHHHHTT--S----T
T ss_pred HHHHHhC-CCCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCC
Confidence 3344444 678999999999999999999999999875 34444
No 197
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.15 E-value=0.0012 Score=63.75 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=26.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
+.+.+|+|.|++|+||||+|+.|+..+....
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~ 110 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSRWP 110 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhhCC
Confidence 4567999999999999999999999876543
No 198
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.14 E-value=0.00039 Score=57.70 Aligned_cols=29 Identities=38% Similarity=0.602 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
+..+.|.|++||||||+++.|+..+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 46899999999999999999999887763
No 199
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.00045 Score=61.64 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=27.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+..+.|.|+|+|||||||++..+++.|.-..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~ 34 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGY 34 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCc
Confidence 45688999999999999999999999876533
No 200
>KOG1384|consensus
Probab=97.12 E-value=0.0052 Score=60.53 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=32.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMD 104 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d 104 (395)
+-++|+|.|..|||||-|+-.||.+++...+..+.+.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQ 42 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQ 42 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeeccccee
Confidence 3589999999999999999999999999988765543
No 201
>KOG0733|consensus
Probab=97.06 E-value=0.0012 Score=69.58 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
.++=+.+-||||||||.||+.+|.+++++++.
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~ 253 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLS 253 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCceEe
Confidence 34669999999999999999999999999975
No 202
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=97.02 E-value=0.015 Score=55.78 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=66.9
Q ss_pred EEEEEECChHHHHHHHhh--cCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 218 LVIYLDIPVSKVKENVKK--RNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 218 lvIyLd~p~e~~~eRI~~--Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
-++||+++.+++.+|-+. |.-|.... ..-++.+.... + .+...++.+++ +|| |..-++-++.+.|...-
T Consensus 85 ~iLFLeA~~~~Lv~RY~etRR~HPL~~~-----~~l~~~I~~ER-e-lL~pLk~~A~~-vID-Ts~ls~~~Lr~~i~~~f 155 (286)
T COG1660 85 RVLFLEADDETLVRRYSETRRSHPLSED-----GLLLEAIAKER-E-LLAPLREIADL-VID-TSELSVHELRERIRTRF 155 (286)
T ss_pred eEEEEECchhHHHHHHhhhhhcCCCCcc-----CcHHHHHHHHH-H-HHHHHHHHhhh-Eee-cccCCHHHHHHHHHHHH
Confidence 589999999999999875 33343322 11333333322 1 22234455665 558 45668888888887632
Q ss_pred hccccccccccccccccchhHHHHHhhhhhccchhHhhh--hhccCCCCCCcee-ecchhhhHHHHHH
Q psy6807 296 FDHYDHFSNKMREWRQLTTKEWNNLRMLYADEKSDLMTA--FNTVERYDCPELA-YTGDDMMEIEEKL 360 (395)
Q Consensus 296 f~~~~~~~~~~~~w~~~~~~~~~~~r~~~~~~~~~~~~~--~~~~~~~~~~e~~-~~~~~~~~~~~~~ 360 (395)
-.. ..+ + ..-.-.+|.-......| -+.|.+. +- .|.| +|||- .++-|.+..-+++
T Consensus 156 ~~~-~~~--~----~~v~v~SFGFKyGiP~D-ADlVFDVRfLP-NP~y-~peLRp~tG~d~~V~dYv~ 213 (286)
T COG1660 156 LGK-EER--T----LTVTVESFGFKYGIPID-ADLVFDVRFLP-NPHY-DPELRPLTGLDKPVADYVM 213 (286)
T ss_pred ccC-CCc--c----eEEEEEecccccCCCCC-cceEEEecccC-CCcc-ccccCcCCCCChhHHHHHH
Confidence 211 000 0 01112345555555566 4444443 33 5666 88874 4555555544444
No 203
>PRK09169 hypothetical protein; Validated
Probab=97.01 E-value=0.0007 Score=79.81 Aligned_cols=47 Identities=11% Similarity=-0.017 Sum_probs=38.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccch
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLD 118 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~ 118 (395)
.+.|+++|.+|+||||+++.|+++|+..++ +.|..+.. .|..+..++
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~Fi---DtD~kIeks~GrkI~rIF 2157 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKP---HSVRKIAKKIGKKIARIQ 2157 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCcc---ccHHHHHHHhCCCHHHHH
Confidence 368999999999999999999999999998 55665555 777666554
No 204
>PLN02840 tRNA dimethylallyltransferase
Probab=97.01 E-value=0.00064 Score=69.63 Aligned_cols=36 Identities=28% Similarity=0.543 Sum_probs=31.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPAN 102 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~ 102 (395)
++.++|+|.|++||||||++..||++++...++.++
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 456799999999999999999999999988775544
No 205
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=96.94 E-value=0.0064 Score=54.29 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPP 100 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e 100 (395)
+|+++|.|+-.||||||+++||+.++....-|
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt~~~wE 39 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNTTSAWE 39 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCCCchhH
Confidence 58999999999999999999999999876533
No 206
>PRK10646 ADP-binding protein; Provisional
Probab=96.87 E-value=0.0017 Score=57.70 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=33.2
Q ss_pred HHHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhccc-cCCCC
Q psy6807 57 LMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMI-ALPPA 101 (395)
Q Consensus 57 ~~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~-~~~e~ 101 (395)
+..++.+ +.+.+.+|.+.|..||||||+++.|++.||.. .+..|
T Consensus 17 l~~~la~-~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SP 61 (153)
T PRK10646 17 LGARVAK-ACDGATVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSP 61 (153)
T ss_pred HHHHHHH-hCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 3344433 34667899999999999999999999999974 34444
No 207
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.85 E-value=0.00099 Score=60.19 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
++|.|.|++||||||+|..|+..++.+
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~ 28 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQ 28 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCC
Confidence 579999999999999999999988754
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.84 E-value=0.0014 Score=65.80 Aligned_cols=28 Identities=25% Similarity=0.523 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..++++|.|||||||||+|+.||+.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4588999999999999999999998875
No 209
>PLN02748 tRNA dimethylallyltransferase
Probab=96.80 E-value=0.00091 Score=69.55 Aligned_cols=39 Identities=28% Similarity=0.490 Sum_probs=33.7
Q ss_pred hccCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcc
Q psy6807 65 FNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANM 103 (395)
Q Consensus 65 ~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~ 103 (395)
+..++++|+|.|++||||||||..||+.++...+..+++
T Consensus 18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Dsm 56 (468)
T PLN02748 18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSM 56 (468)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchh
Confidence 446678999999999999999999999999888866543
No 210
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.76 E-value=0.001 Score=57.21 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=24.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 72 IVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 72 I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
|+|.|++|+|||++++.||+.++.+++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 789999999999999999999987653
No 211
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.75 E-value=0.0011 Score=61.83 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=22.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+++.+++|+||+||||||+.+.|..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4578999999999999999999973
No 212
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.75 E-value=0.0026 Score=60.67 Aligned_cols=29 Identities=31% Similarity=0.605 Sum_probs=25.2
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+...+++|.|++||||||+++.++..+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 34456899999999999999999998876
No 213
>KOG0744|consensus
Probab=96.75 E-value=0.0011 Score=65.24 Aligned_cols=29 Identities=38% Similarity=0.765 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
++|.+.||||.|||+++|.||++|..+..
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~ 206 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTN 206 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeec
Confidence 78999999999999999999999987743
No 214
>KOG0730|consensus
Probab=96.74 E-value=0.0062 Score=64.81 Aligned_cols=38 Identities=37% Similarity=0.457 Sum_probs=32.6
Q ss_pred HHHhc-cCCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 62 EDRFN-QNSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 62 ~~~~~-~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
..||. ..++=|.+.|||||||||+|+.||.+.++.++.
T Consensus 460 F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls 498 (693)
T KOG0730|consen 460 FARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS 498 (693)
T ss_pred HHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee
Confidence 34554 567889999999999999999999999998874
No 215
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.70 E-value=0.0031 Score=52.84 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=28.0
Q ss_pred HHHHHHhc-cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 59 EDTEDRFN-QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 59 ~~~~~~~~-~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
..+...+. .....+.|.|++|+||||+++.++..+.
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34444432 3567899999999999999999999874
No 216
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.67 E-value=0.0036 Score=55.22 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=30.3
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhcc-ccCCCC
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELDM-IALPPA 101 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~~-~~~~e~ 101 (395)
.+.+.+|++.|.-||||||++|.+++.||. ..+..|
T Consensus 22 l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SP 58 (149)
T COG0802 22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSP 58 (149)
T ss_pred CCCCCEEEEEcCCcCChHHHHHHHHHHcCCCCcccCC
Confidence 467889999999999999999999999995 334444
No 217
>PF13173 AAA_14: AAA domain
Probab=96.66 E-value=0.0019 Score=55.17 Aligned_cols=27 Identities=48% Similarity=0.715 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
|.++++|.|+.||||||+++.+++.+.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999998876
No 218
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.62 E-value=0.0049 Score=57.20 Aligned_cols=57 Identities=11% Similarity=0.116 Sum_probs=35.9
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHHHHHh-ccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 38 LRRPPPYPYETRDFKFPWTLMEDTEDRF-NQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 38 ~~~~~pf~~~~~~~~~~~~~~~~~~~~~-~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
-..+.++.+++...+--...+..+..-. ......|.|.|++|||||++++.++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 6 VGLPDDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CCCCCchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444554444443222222333333321 45677999999999999999999998764
No 219
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.61 E-value=0.006 Score=60.63 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=36.5
Q ss_pred CCCCchhhhHHHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 48 TRDFKFPWTLMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+-.|.+-......+..-+. ..+.|.|+|++|+||||+++.||+.++.+++
T Consensus 44 d~~y~f~~~~~~~vl~~l~-~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFA-YDRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCccCCHHHHHHHHHHHh-cCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 3345443444444555553 3567999999999999999999999998875
No 220
>PF05729 NACHT: NACHT domain
Probab=96.61 E-value=0.0018 Score=56.34 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
++++|.|.+|+||||+++.++..+.....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCc
Confidence 47999999999999999999988765543
No 221
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.61 E-value=0.0027 Score=57.79 Aligned_cols=33 Identities=24% Similarity=0.173 Sum_probs=26.5
Q ss_pred HHHhccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 62 EDRFNQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 62 ~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
....-+.+.+|+|.|++||||||+++.|...+.
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 333334578999999999999999999987653
No 222
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.60 E-value=0.0028 Score=61.08 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=31.9
Q ss_pred HHHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 57 LMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 57 ~~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+.+++..-+ ..+..|.++|++|+|||++|+.||+.+|.+++
T Consensus 10 l~~~~l~~l-~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 10 VTSRALRYL-KSGYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred HHHHHHHHH-hcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 445554443 34678889999999999999999998887665
No 223
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.60 E-value=0.0017 Score=61.24 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
..-+.+.||||+||||+|..+|++++..+.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 356899999999999999999999998764
No 224
>KOG1532|consensus
Probab=96.60 E-value=0.0075 Score=58.21 Aligned_cols=32 Identities=38% Similarity=0.481 Sum_probs=27.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+++.+|++.|+-||||||+.++|-.++....-
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ 48 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKT 48 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccC
Confidence 56789999999999999999999988865443
No 225
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.55 E-value=0.0015 Score=64.00 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=28.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCCCCcc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANM 103 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~ 103 (395)
+|+|.|++|||||+++..||++++...++.+++
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence 589999999999999999999999887765543
No 226
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.52 E-value=0.002 Score=54.28 Aligned_cols=29 Identities=45% Similarity=0.765 Sum_probs=21.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
++...++|.|++|||||++++.+++.+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35678999999999999999999998743
No 227
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.47 E-value=0.0023 Score=57.73 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+-.|+|+||+||||||+.|.+|.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHh
Confidence 3577999999999999999999996
No 228
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.45 E-value=0.0014 Score=56.42 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 72 IVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 72 I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
|.++|+||+||||+++.||+.+|..+.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 679999999999999999999997664
No 229
>PF13245 AAA_19: Part of AAA domain
Probab=96.39 E-value=0.0038 Score=48.83 Aligned_cols=26 Identities=38% Similarity=0.693 Sum_probs=19.5
Q ss_pred CCeEEEEEcCCCCChH-HHHHHHHHHh
Q psy6807 68 NSKIIVVEGPIASGKT-EFCKKLADEL 93 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKS-Tlak~La~~l 93 (395)
+..+.+|.|+|||||| |++..+++.+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678889999999999 4555555544
No 230
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.39 E-value=0.0034 Score=56.97 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
.+.+|+|.|++||||||+++.|...|....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g 34 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARG 34 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcC
Confidence 456899999999999999999998876544
No 231
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.34 E-value=0.0035 Score=57.96 Aligned_cols=28 Identities=39% Similarity=0.563 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
+++|++.|+.||||||.+.+||..+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4799999999999999999999988654
No 232
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.33 E-value=0.0032 Score=59.45 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++|||||||...|+-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999984
No 233
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.32 E-value=0.0032 Score=59.92 Aligned_cols=25 Identities=20% Similarity=0.523 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
..+-+++|.|++||||||+.+.+|-
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999999995
No 234
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.31 E-value=0.0037 Score=63.99 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=32.8
Q ss_pred HHHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 57 LMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 57 ~~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+-++...|+.+...=|.|.|+||+||||+|+.||+-+..
T Consensus 251 L~dkl~eRL~eraeGILIAG~PGaGKsTFaqAlAefy~~ 289 (604)
T COG1855 251 LSDKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYAS 289 (604)
T ss_pred CCHHHHHHHHhhhcceEEecCCCCChhHHHHHHHHHHHh
Confidence 346677777776788999999999999999999997754
No 235
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.30 E-value=0.0032 Score=64.48 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
++.|.+.|++||||||+|+.||+.++.+++.
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~ 77 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIK 77 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 4689999999999999999999999998874
No 236
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.29 E-value=0.0037 Score=60.05 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+..+++.|+||+||||+|+.+|+.+.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999763
No 237
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.27 E-value=0.0033 Score=62.70 Aligned_cols=24 Identities=25% Similarity=0.600 Sum_probs=22.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLA 90 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La 90 (395)
+.+.++++.||+||||||+.+.+|
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999999999999
No 238
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.25 E-value=0.0039 Score=56.21 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh
Q psy6807 71 IIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l 93 (395)
.|.|+|.+|+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 37899999999999999999998
No 239
>PLN02796 D-glycerate 3-kinase
Probab=96.24 E-value=0.0043 Score=62.08 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
.+.+|+|.|++||||||+++.|+..+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4578999999999999999999998864
No 240
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.24 E-value=0.0043 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLA 90 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La 90 (395)
.+.+++|.|++||||||+++.|.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 46799999999999999999987
No 241
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.21 E-value=0.0042 Score=63.70 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPP 100 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e 100 (395)
++.|.+.|++||||||+|+.||+.++.+++..
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~v 81 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheee
Confidence 46899999999999999999999999988743
No 242
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.004 Score=61.32 Aligned_cols=37 Identities=38% Similarity=0.535 Sum_probs=32.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMD 104 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d 104 (395)
.+++|+|.||.|||||.+|-.||+++|...+..+++.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQ 38 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQ 38 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhh
Confidence 3579999999999999999999999999999766654
No 243
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.17 E-value=0.0064 Score=54.13 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=21.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
..+++++|.|++|+|||++.+.+.+.+...
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456899999999999999999999887665
No 244
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.15 E-value=0.0061 Score=58.54 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=28.6
Q ss_pred HHHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 57 LMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 57 ~~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
+++++.++ ..++.+|.|+|+||+|||||...|...+...
T Consensus 18 ll~~l~~~-~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 18 LLKRLYPH-TGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHGGG-TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhh-cCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 34444433 3468899999999999999999999987644
No 245
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.14 E-value=0.0038 Score=53.24 Aligned_cols=27 Identities=37% Similarity=0.580 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|+.||||||+.+.|+..+
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 357899999999999999999998643
No 246
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.13 E-value=0.0063 Score=58.50 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=30.0
Q ss_pred HHHHHHHHhc---cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 57 LMEDTEDRFN---QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 57 ~~~~~~~~~~---~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.++++.+.+. .+..+|+|.|+.|+||||+|..+++...
T Consensus 4 ~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~ 44 (287)
T PF00931_consen 4 EIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLR 44 (287)
T ss_dssp HHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHH
T ss_pred HHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccc
Confidence 4455555553 4789999999999999999999997733
No 247
>PRK06526 transposase; Provisional
Probab=96.13 E-value=0.0089 Score=57.50 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=25.8
Q ss_pred HhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 64 RFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 64 ~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
.|-+....+++.|++|+|||+++..|+.++
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 455667889999999999999999998765
No 248
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.13 E-value=0.013 Score=54.71 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
.....++|.|++|||||++++.++..+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999876
No 249
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.12 E-value=0.0048 Score=65.18 Aligned_cols=30 Identities=37% Similarity=0.552 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.++++++||+||||||..+.||+++|..+.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 579999999999999999999999998664
No 250
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=96.12 E-value=0.0042 Score=58.48 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~ 92 (395)
++|+|+|.+||||||+++.+.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~ 23 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN 23 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc
Confidence 58999999999999999999875
No 251
>KOG2004|consensus
Probab=96.10 E-value=0.0037 Score=67.05 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=29.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
-+++++++.||||+|||++++.+|..||.+|+
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 46799999999999999999999999998876
No 252
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0041 Score=66.78 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=29.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.++.++++.||||+|||++++.+|+.+|.+|+
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence 36689999999999999999999999998886
No 253
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.08 E-value=0.0081 Score=60.63 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=29.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+-++.+.|-|++|+|||.+|+.+|+++|..++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i 177 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPI 177 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeE
Confidence 45678999999999999999999999999876
No 254
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.07 E-value=0.0061 Score=54.51 Aligned_cols=30 Identities=37% Similarity=0.376 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+++|.|.|.+||||||+++.|...+.....
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~ 30 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGL 30 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 368999999999999999999998865443
No 255
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.06 E-value=0.0053 Score=55.80 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=22.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.||||||+++.|+-
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999999984
No 256
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.06 E-value=0.0071 Score=45.49 Aligned_cols=26 Identities=19% Similarity=0.501 Sum_probs=21.9
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
++.+.+.+|.|+.||||||+...+.-
T Consensus 20 ~~~g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 20 DPRGDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44456899999999999999988864
No 257
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.03 E-value=0.0054 Score=56.83 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 258
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.03 E-value=0.0055 Score=56.81 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 259
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.03 E-value=0.0058 Score=56.33 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+|+|.|++||||||++..|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 789999999999999999887765
No 260
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.03 E-value=0.0056 Score=56.56 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999999853
No 261
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.00 E-value=0.0056 Score=53.79 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
++.|.|.|++|||||||++.|-.
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcC
Confidence 46799999999999999999976
No 262
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.00 E-value=0.0063 Score=53.17 Aligned_cols=28 Identities=39% Similarity=0.578 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
++|.|+|+.+|||||+++.|...|....
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 4799999999999999999998876443
No 263
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.99 E-value=0.0061 Score=54.63 Aligned_cols=31 Identities=32% Similarity=0.359 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
++++.|+|..+||||||++.|..+|....+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~r 32 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYR 32 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcE
Confidence 5799999999999999999999998776653
No 264
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.99 E-value=0.011 Score=58.65 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+.+|+|.|++||||||++..||..+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999998774
No 265
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.006 Score=56.27 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=23.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
..+.+++|.|+.|||||||++.|+-
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999995
No 266
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.98 E-value=0.0066 Score=54.24 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+|+++|++||||||++..|+..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 267
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.97 E-value=0.006 Score=58.71 Aligned_cols=28 Identities=36% Similarity=0.442 Sum_probs=24.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+.+++|.||.|||||||.+.|+.-+.
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4588999999999999999999997554
No 268
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.97 E-value=0.0061 Score=56.35 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+-.
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 269
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.96 E-value=0.0063 Score=56.13 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999999853
No 270
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.95 E-value=0.0059 Score=61.29 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=22.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+-++++-||+||||||+.++||-
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4568999999999999999999994
No 271
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.11 Score=53.74 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPP 100 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e 100 (395)
.+|+=+..+||||||+|+.|.+-+|.+++.-
T Consensus 375 tll~pia~igcgktt~ak~l~~lf~w~~vqn 405 (758)
T COG5324 375 TLLVPIATIGCGKTTVAKILEKLFGWPVVQN 405 (758)
T ss_pred EEEEEEEEeccCcccHHHHHHHHcCCccccc
Confidence 3677778899999999999999999988743
No 272
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.94 E-value=0.0058 Score=50.61 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=22.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 72 IVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 72 I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
|.|.|++|+|||++++.|++.+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 57899999999999999998876443
No 273
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.93 E-value=0.011 Score=59.11 Aligned_cols=30 Identities=27% Similarity=0.261 Sum_probs=26.2
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..++.+|.|+|++||||||++..|...+..
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999999887754
No 274
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.0067 Score=56.09 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+++.|+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 275
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.92 E-value=0.0088 Score=63.54 Aligned_cols=32 Identities=19% Similarity=0.568 Sum_probs=27.7
Q ss_pred HHhccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 63 DRFNQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 63 ~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.++.++.+++++.||+|+|||||++.||+.+.
T Consensus 97 ~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 97 QGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred HhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 44566778999999999999999999998764
No 276
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.91 E-value=0.0067 Score=56.32 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++|||||||++.|+-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999999985
No 277
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.91 E-value=0.0066 Score=56.37 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 278
>PRK13695 putative NTPase; Provisional
Probab=95.91 E-value=0.0074 Score=54.14 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.|+|+|.+||||||+++.++..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999987763
No 279
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.90 E-value=0.0062 Score=56.31 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++|||||||++.|+-
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILG 47 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4678999999999999999999985
No 280
>PHA02244 ATPase-like protein
Probab=95.90 E-value=0.013 Score=59.22 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=30.8
Q ss_pred HHhccCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 63 DRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 63 ~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.++-.....|.|.|++|||||++|+.||..++.+++
T Consensus 113 ~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv 148 (383)
T PHA02244 113 AKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFY 148 (383)
T ss_pred HHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 445556778999999999999999999999988776
No 281
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.90 E-value=0.0069 Score=56.29 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||.+.|+-.
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 282
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.89 E-value=0.0063 Score=57.12 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+++.|+-
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcC
Confidence 4678999999999999999999984
No 283
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.89 E-value=0.0068 Score=56.97 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.||||||+++.|+-
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999985
No 284
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.89 E-value=0.0068 Score=55.76 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.||||||+.+.|+-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999999985
No 285
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.89 E-value=0.007 Score=55.83 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+.+.|+-.
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 286
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.89 E-value=0.026 Score=53.14 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLA 90 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La 90 (395)
+.+..+.|.|.||+||||+|+.|+
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcC
Confidence 446789999999999999999997
No 287
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.88 E-value=0.0067 Score=55.14 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+.+.|+-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 46789999999999999999999853
No 288
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.88 E-value=0.0069 Score=57.12 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|++|||||||++.|+-.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 289
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.87 E-value=0.007 Score=56.94 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|++||||||+++.|+-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 290
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.87 E-value=0.0071 Score=57.43 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
..+..+.|.|.+||||||+++.|+-
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 4678999999999999999999984
No 291
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.86 E-value=0.0081 Score=58.64 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
....++|.|++|+|||++++.+|+.++..
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34568999999999999999999998754
No 292
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.86 E-value=0.0077 Score=54.31 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.||||||+++.|+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999999984
No 293
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.86 E-value=0.0074 Score=56.37 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=24.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
..+.+++|.|++|||||||++.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357899999999999999999999654
No 294
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.85 E-value=0.013 Score=53.30 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=25.0
Q ss_pred HHHhccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 62 EDRFNQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 62 ~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
...+-+++..+++.|++|+|||.+|..++.++-
T Consensus 40 ~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~ 72 (178)
T PF01695_consen 40 ALEFIENGENLILYGPPGTGKTHLAVAIANEAI 72 (178)
T ss_dssp HH-S-SC--EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhc
Confidence 344567789999999999999999999997653
No 295
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.85 E-value=0.0075 Score=55.36 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+.+.|+-.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999999853
No 296
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.0073 Score=56.20 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=23.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+-.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 297
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.84 E-value=0.0084 Score=61.47 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcccc--CCCCccccccc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIA--LPPANMDMFYK 108 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~--~~e~~~d~~~~ 108 (395)
.+.+|+|.|+.||||||+++.|...+.... +-..++|.+|.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL 253 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL 253 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence 468899999999999999999988774321 11224566554
No 298
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.0078 Score=54.00 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|++||||||+.+.|+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 299
>PRK09087 hypothetical protein; Validated
Probab=95.82 E-value=0.019 Score=54.12 Aligned_cols=33 Identities=30% Similarity=0.614 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPP 100 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e 100 (395)
....++|.|++|||||++++.+++..+..+++.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~ 75 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDALLIHP 75 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCCEEecH
Confidence 345799999999999999999999887777653
No 300
>CHL00181 cbbX CbbX; Provisional
Probab=95.81 E-value=0.0087 Score=58.59 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+..|++.|+||+||||+|+.+|+.+.
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999999764
No 301
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.80 E-value=0.009 Score=58.28 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+.+|+|.|+.||||||++..||..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998764
No 302
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.008 Score=56.40 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=23.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
..+.+++|.|+.|||||||++.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998543
No 303
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.79 E-value=0.0078 Score=56.08 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||.+.|+-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 304
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.78 E-value=0.0087 Score=60.57 Aligned_cols=30 Identities=27% Similarity=0.176 Sum_probs=27.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
.++.+|.|+|.+||||||+++.|..+|.-.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~ 32 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSER 32 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence 468899999999999999999999998754
No 305
>PRK09183 transposase/IS protein; Provisional
Probab=95.78 E-value=0.015 Score=56.13 Aligned_cols=28 Identities=32% Similarity=0.401 Sum_probs=24.2
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
-+.+..++|.|++|+|||+++..|+...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999999998654
No 306
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.78 E-value=0.0084 Score=55.79 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
..+.+++|.|+.|||||||.+.|+-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3578999999999999999999985
No 307
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.77 E-value=0.0086 Score=53.91 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999999999853
No 308
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.0083 Score=56.62 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 309
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.77 E-value=0.0087 Score=51.35 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
++..|++.|.+||||||++..|..
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhC
Confidence 357899999999999999999874
No 310
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.76 E-value=0.0083 Score=55.86 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.||||||+.+.|+.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999999985
No 311
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.76 E-value=0.0086 Score=55.29 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999954
No 312
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.76 E-value=0.0085 Score=56.01 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+-.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999999999853
No 313
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.76 E-value=0.0082 Score=56.56 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||.+.|+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999853
No 314
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.76 E-value=0.19 Score=52.84 Aligned_cols=30 Identities=20% Similarity=0.208 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+.-+.+.|++|+||||+|+.||+.+++..-
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~ 64 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCSNG 64 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCcCC
Confidence 457999999999999999999999887543
No 315
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.75 E-value=0.0085 Score=56.42 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.|||||||++.|+-
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999984
No 316
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.75 E-value=0.0083 Score=53.33 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=23.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
+|+|.|++||||||++..|.+.+....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 588999999999999999999875443
No 317
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.75 E-value=0.009 Score=53.36 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+++.|+-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999999854
No 318
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.75 E-value=0.0085 Score=56.30 Aligned_cols=26 Identities=19% Similarity=0.357 Sum_probs=23.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999999853
No 319
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.75 E-value=0.0089 Score=49.40 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHh
Q psy6807 72 IVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 72 I~i~G~~GsGKSTlak~La~~l 93 (395)
|+|.|..|||||||.+.|+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999999754
No 320
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.75 E-value=0.0085 Score=54.72 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+++.|+-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999999984
No 321
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.75 E-value=0.0091 Score=58.08 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
+++|.|.|.+|||||||+..|+..|...+
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 36899999999999999999999886543
No 322
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.74 E-value=0.0078 Score=61.39 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.++-|.+.|++|+|||++|+.+|.+++..++
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i 194 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFI 194 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEE
Confidence 4567999999999999999999999987665
No 323
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.74 E-value=0.0093 Score=53.50 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||.+.|+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999999999864
No 324
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.74 E-value=0.0097 Score=59.74 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=27.0
Q ss_pred HHHhccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 62 EDRFNQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 62 ~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
....-+..+.|+|+|+.||||||+++.|...++
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHHHHcccC
Confidence 333445678999999999999999999987654
No 325
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.74 E-value=0.0085 Score=56.09 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999954
No 326
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.73 E-value=0.011 Score=56.73 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=26.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
+....|+|+|++||||||+++.|.+.+...
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ccceEEEEECCCccccchHHHHHhhhcccc
Confidence 457899999999999999999999876544
No 327
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.73 E-value=0.009 Score=55.02 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.||||||+.+.|+-
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999999985
No 328
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.72 E-value=0.009 Score=54.27 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLA 90 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La 90 (395)
+.+.+++|.|++|||||||.+.+.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999999999885
No 329
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=95.72 E-value=0.008 Score=59.18 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMD 104 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d 104 (395)
.++|+|.||.|||||.||-.||++. ...++.+++.
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~-~eIIsaDS~Q 38 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGK-AEIINVDSIQ 38 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC-CcEEeccHHH
Confidence 4699999999999999999999994 4666655543
No 330
>PRK06620 hypothetical protein; Validated
Probab=95.72 E-value=0.018 Score=53.82 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
..+.|.|++|||||++++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 568999999999999999999887765543
No 331
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.71 E-value=0.0084 Score=51.69 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+++|.|++|+||||++..++..+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999987643
No 332
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.71 E-value=0.0093 Score=54.53 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+++.|+-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999999864
No 333
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.70 E-value=0.013 Score=57.19 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=31.1
Q ss_pred HHHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 57 LMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 57 ~~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
++..+.++ .-+..+|.|+|.||+||||+...|..+|--..
T Consensus 40 ll~~l~p~-tG~a~viGITG~PGaGKSTli~~L~~~l~~~G 79 (323)
T COG1703 40 LLRALYPR-TGNAHVIGITGVPGAGKSTLIEALGRELRERG 79 (323)
T ss_pred HHHHHhhc-CCCCcEEEecCCCCCchHHHHHHHHHHHHHCC
Confidence 44555544 35678999999999999999999998885433
No 334
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.70 E-value=0.0091 Score=56.38 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++|||||||++.|+-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999999985
No 335
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.69 E-value=0.0089 Score=61.48 Aligned_cols=30 Identities=37% Similarity=0.413 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
..|.|.|++|||||++|+.||+.++.+++.
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~ 138 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAI 138 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCcee
Confidence 569999999999999999999999887763
No 336
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.69 E-value=0.014 Score=57.47 Aligned_cols=28 Identities=36% Similarity=0.434 Sum_probs=24.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+..+.|+|+|++||||||+++.|...+.
T Consensus 130 ~~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 130 LARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999998753
No 337
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.69 E-value=0.0088 Score=55.96 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
.+.++-++.||+||||||+.+.|-.-
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhh
Confidence 34679999999999999999999763
No 338
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.0086 Score=55.28 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=24.5
Q ss_pred HHHHHHhccCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 59 EDTEDRFNQNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 59 ~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.++-.+.+ + +++|.|++||||||+++.|+-
T Consensus 17 ~~vs~~i~~-g-~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 17 DGVSLTLGP-G-MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cceeEEEcC-C-cEEEECCCCCCHHHHHHHHhC
Confidence 333444444 6 999999999999999999985
No 339
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.68 E-value=0.0095 Score=55.77 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.|||||||++.|+-
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999999985
No 340
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.68 E-value=0.0095 Score=60.05 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
++-+.|.|++|+|||++++.+|..++..++
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~ 185 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFI 185 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEE
Confidence 566999999999999999999999887654
No 341
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.67 E-value=0.011 Score=57.39 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+++|+++|++||||||.+..||..+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999998774
No 342
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.67 E-value=0.0091 Score=61.33 Aligned_cols=29 Identities=34% Similarity=0.429 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
..|.|.|++|||||++|+.||+.++.++.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~ 145 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFA 145 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeE
Confidence 47999999999999999999999987664
No 343
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.67 E-value=0.0099 Score=59.03 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
....++|.|++|+||||+|+.+|+.++..+
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 356789999999999999999999998654
No 344
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.67 E-value=0.0096 Score=55.76 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|+.|||||||.+.|+-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999999853
No 345
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.67 E-value=0.26 Score=55.02 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
...++|.|+.|+||||+++.||+.|.+..
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~ 65 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNCVE 65 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCccc
Confidence 45689999999999999999999998753
No 346
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.67 E-value=0.018 Score=56.33 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=26.5
Q ss_pred HHhc-cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 63 DRFN-QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 63 ~~~~-~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+|. ++..+|.|.|.+|||||||++.|...+.
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4453 4678999999999999999999988764
No 347
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.67 E-value=0.0096 Score=55.18 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.|||||||.+.|+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999999985
No 348
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.67 E-value=0.0095 Score=55.75 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+..
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999999964
No 349
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.66 E-value=0.013 Score=53.01 Aligned_cols=26 Identities=38% Similarity=0.544 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..+.+.||+|+|||.+|+.||+.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57899999999999999999999885
No 350
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.66 E-value=0.011 Score=54.62 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
..|+|.|++||||||+++.|.+.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999998765
No 351
>KOG1970|consensus
Probab=95.65 E-value=0.0094 Score=62.39 Aligned_cols=31 Identities=32% Similarity=0.559 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.+++..|+||+||||||..+.|++++|..++
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 4569999999999999999999999998876
No 352
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.65 E-value=0.0099 Score=51.91 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+++.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 46789999999999999999999753
No 353
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.65 E-value=0.01 Score=54.48 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+++.+++|.|++||||||+++.|+-
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999985
No 354
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.0099 Score=55.53 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|++|||||||.+.|+..
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999999854
No 355
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.64 E-value=0.0098 Score=56.44 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999999999864
No 356
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.64 E-value=0.0098 Score=56.56 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|+.||||||+++.|+-.+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999999643
No 357
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.01 Score=58.52 Aligned_cols=29 Identities=34% Similarity=0.407 Sum_probs=27.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
.|.+.||.|||||-||+.||+.|+.++.-
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFai 127 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFAI 127 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 79999999999999999999999998863
No 358
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.61 E-value=0.011 Score=55.40 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=23.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|++||||||+++.|+..+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 457899999999999999999999643
No 359
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.61 E-value=0.01 Score=56.81 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999953
No 360
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.60 E-value=0.01 Score=55.73 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+-.
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999999954
No 361
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.60 E-value=0.01 Score=56.61 Aligned_cols=25 Identities=44% Similarity=0.574 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
.+.+++|.|+.||||||+++.|+-.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999853
No 362
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.60 E-value=0.01 Score=56.19 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999999853
No 363
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.59 E-value=0.016 Score=57.67 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+..+.|+|+|++||||||+++.|...+
T Consensus 142 ~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 142 DSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999998865
No 364
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.59 E-value=0.011 Score=56.07 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|++|||||||++.|+-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999999853
No 365
>PRK06893 DNA replication initiation factor; Validated
Probab=95.59 E-value=0.035 Score=52.36 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
..+.|.|++|+|||+++..++.++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~ 64 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYL 64 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999998763
No 366
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.59 E-value=0.011 Score=53.29 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+++.|+.
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G 47 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999985
No 367
>PRK10908 cell division protein FtsE; Provisional
Probab=95.58 E-value=0.011 Score=55.09 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++|||||||.+.|+-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999984
No 368
>PRK14974 cell division protein FtsY; Provisional
Probab=95.58 E-value=0.012 Score=58.86 Aligned_cols=28 Identities=36% Similarity=0.334 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
++.+|+++|++||||||++..||..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999987643
No 369
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.58 E-value=0.011 Score=52.56 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+.+.|+-
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSG 48 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999999984
No 370
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.58 E-value=0.02 Score=53.04 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=25.4
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
....++|+|.|..||||||+.+.|.+.++
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34678999999999999999999998765
No 371
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.58 E-value=0.011 Score=53.50 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|++||||||+.+.|+-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999999543
No 372
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.58 E-value=0.014 Score=58.36 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=34.5
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHh-ccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 39 RRPPPYPYETRDFKFPWTLMEDTEDRF-NQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 39 ~~~~pf~~~~~~~~~~~~~~~~~~~~~-~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
..|+-|+.++... ..+...+.+-+ ...+..++|.|++|+|||++++.+++.+.
T Consensus 12 ~~p~~l~gRe~e~---~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 12 YVPDRIVHRDEQI---EELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CCCCCCCCcHHHH---HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455566665553 22222222222 23456899999999999999999998764
No 373
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.011 Score=56.72 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=23.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|++|||||||++.|+-.+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 468899999999999999999998643
No 374
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.57 E-value=0.011 Score=55.60 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=23.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+++.|+-.
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999999853
No 375
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.011 Score=55.82 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+-.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999953
No 376
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.57 E-value=0.011 Score=54.55 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 377
>PRK13768 GTPase; Provisional
Probab=95.56 E-value=0.012 Score=56.56 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+++|+|.|+.||||||++..++..+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~ 28 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEE 28 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHh
Confidence 578999999999999999999987744
No 378
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.011 Score=55.84 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999853
No 379
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.56 E-value=0.011 Score=60.62 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.++-|.+.|++|+|||++++.+|..++..++
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi 208 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFI 208 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4678999999999999999999999887665
No 380
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.56 E-value=0.011 Score=54.82 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+-.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999999853
No 381
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.55 E-value=0.012 Score=54.49 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+++++|+|+.||||||+.+.++-
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999985
No 382
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.54 E-value=0.011 Score=56.21 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999854
No 383
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.012 Score=52.61 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+.+.|+-.
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999999864
No 384
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.53 E-value=0.0085 Score=57.07 Aligned_cols=23 Identities=52% Similarity=0.806 Sum_probs=20.3
Q ss_pred EEcCCCCChHHHHHHHHHHhccc
Q psy6807 74 VEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 74 i~G~~GsGKSTlak~La~~l~~~ 96 (395)
|.|++||||||+++.+.+.+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999988765
No 385
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.52 E-value=0.012 Score=54.37 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+.+.|+..
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999853
No 386
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.52 E-value=0.011 Score=55.48 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999999954
No 387
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.52 E-value=0.011 Score=53.48 Aligned_cols=25 Identities=48% Similarity=0.697 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+|.|.|++|||||++|..++...+.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~ 25 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGG 25 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4789999999999999999987543
No 388
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.52 E-value=0.012 Score=55.58 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+-.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999999853
No 389
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.52 E-value=0.012 Score=55.97 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35789999999999999999999953
No 390
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.51 E-value=0.012 Score=56.34 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
..+.+++|.|++|||||||++.|+-.+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 357899999999999999999999654
No 391
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.51 E-value=0.012 Score=54.16 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+.+.|+..
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999854
No 392
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.51 E-value=0.012 Score=55.85 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46889999999999999999999853
No 393
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.50 E-value=0.012 Score=54.60 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+++.|+-.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999999853
No 394
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.50 E-value=0.012 Score=56.02 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35789999999999999999999964
No 395
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.50 E-value=0.012 Score=56.03 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++|||||||++.|+-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMT 48 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999985
No 396
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.49 E-value=0.011 Score=54.49 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|++||||||+++.|+-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 457899999999999999999998643
No 397
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.49 E-value=0.012 Score=56.57 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+..
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999999953
No 398
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.49 E-value=0.012 Score=56.25 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=23.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999999999964
No 399
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.49 E-value=0.012 Score=56.00 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999954
No 400
>PRK13764 ATPase; Provisional
Probab=95.48 E-value=0.015 Score=62.29 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=28.4
Q ss_pred HHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 61 TEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 61 ~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
...++.+..+.|+|+|++||||||+++.|++.+..
T Consensus 249 l~~~l~~~~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 249 LKERLEERAEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34445455678999999999999999999988763
No 401
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.48 E-value=0.013 Score=53.66 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|+.||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999999853
No 402
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.47 E-value=0.019 Score=57.16 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=23.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+..+.|+|.|++||||||+++.|...+
T Consensus 146 ~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 146 RAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 356899999999999999999999764
No 403
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.47 E-value=0.012 Score=55.35 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999964
No 404
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.012 Score=55.14 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+.+.|+-.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999853
No 405
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.46 E-value=0.019 Score=51.44 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=26.8
Q ss_pred HHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 58 MEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 58 ~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
++.....+. .+++++.|.+|+|||||...|....
T Consensus 26 ~~~l~~~l~--~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLK--GKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHT--TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhc--CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455555553 3899999999999999999998643
No 406
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.46 E-value=0.012 Score=56.19 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999964
No 407
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.45 E-value=0.013 Score=54.65 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 408
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.45 E-value=0.013 Score=53.84 Aligned_cols=26 Identities=27% Similarity=0.611 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+-.
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 46889999999999999999999853
No 409
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.45 E-value=0.064 Score=51.04 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=23.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
.++-.|.|.|..|||||||.+.||..+
T Consensus 51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 51 YKGERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCcc
Confidence 357899999999999999999999654
No 410
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.45 E-value=0.013 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.|||||||++.|+-
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568999999999999999999985
No 411
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.43 E-value=0.013 Score=55.73 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
..+.+++|.|++|||||||++.|+-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999999985
No 412
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.43 E-value=0.019 Score=58.00 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=24.7
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
.+...+|+|+|+.||||||+++.|...+
T Consensus 131 ~~~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 131 APQEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999999876
No 413
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.42 E-value=0.013 Score=54.25 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+-.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999854
No 414
>PRK04296 thymidine kinase; Provisional
Probab=95.42 E-value=0.014 Score=53.49 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+++++|++||||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998876
No 415
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.41 E-value=0.013 Score=54.35 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|++|||||||++.|+..
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 416
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.013 Score=54.83 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=23.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|+.||||||+++.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 357899999999999999999998643
No 417
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.40 E-value=0.013 Score=54.95 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 418
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.39 E-value=0.015 Score=59.04 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=24.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+++.+|+|.|++||||||++.+||..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999865
No 419
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.39 E-value=0.012 Score=56.46 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|++|||||||++.|+-.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35789999999999999999999853
No 420
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.39 E-value=0.013 Score=61.42 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.++-|.+.|++|+|||.+|+.+|.+++.+++
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~ 288 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLL 288 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 4577999999999999999999999998876
No 421
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.39 E-value=0.013 Score=56.33 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999853
No 422
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.38 E-value=0.014 Score=55.17 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+-.
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 423
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.38 E-value=0.014 Score=55.43 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||.+.|+-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35789999999999999999999953
No 424
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.38 E-value=0.041 Score=52.09 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
....++|.|++|||||+++..++..+..
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4468999999999999999999987653
No 425
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.37 E-value=0.014 Score=55.47 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 35789999999999999999999853
No 426
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.37 E-value=0.025 Score=54.66 Aligned_cols=30 Identities=37% Similarity=0.512 Sum_probs=24.4
Q ss_pred hccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 65 FNQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 65 ~~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.....+|+|.|++||||||+++.|...+.
T Consensus 76 ~~~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 76 LEKPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HhcCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 334556899999999999999998876653
No 427
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.37 E-value=0.013 Score=56.46 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999999853
No 428
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.37 E-value=0.014 Score=55.54 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=23.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|++|||||||++.|+-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 357899999999999999999999643
No 429
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.014 Score=55.26 Aligned_cols=25 Identities=20% Similarity=0.553 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+-+|+|.|++|||||||.+.|+.
T Consensus 28 ~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 28 NQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhc
Confidence 3577999999999999999999986
No 430
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.36 E-value=0.014 Score=55.33 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||.+.|+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35789999999999999999999853
No 431
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.36 E-value=0.014 Score=55.56 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999999999853
No 432
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.36 E-value=0.014 Score=56.13 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=23.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 46789999999999999999999864
No 433
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.35 E-value=0.014 Score=55.36 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|++||||||+++.|+-.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 35789999999999999999999964
No 434
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.35 E-value=0.013 Score=56.46 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|++|||||||++.|+-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35789999999999999999999853
No 435
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.34 E-value=0.014 Score=55.73 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+-.
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999853
No 436
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.34 E-value=0.014 Score=55.39 Aligned_cols=26 Identities=19% Similarity=0.465 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 45789999999999999999999853
No 437
>KOG0991|consensus
Probab=95.33 E-value=0.02 Score=54.28 Aligned_cols=36 Identities=39% Similarity=0.493 Sum_probs=30.5
Q ss_pred HHHHHHh-----ccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 59 EDTEDRF-----NQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 59 ~~~~~~~-----~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.|..|+ ..++..+++.||||+||||-+..||.+|=
T Consensus 33 e~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 33 EDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 6677776 35778999999999999999999998764
No 438
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.33 E-value=0.015 Score=53.52 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+-.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999999999853
No 439
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.33 E-value=0.016 Score=45.31 Aligned_cols=25 Identities=40% Similarity=0.511 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+|++.|..|+||||++..||..+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998844
No 440
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.32 E-value=0.014 Score=56.87 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+..
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999999853
No 441
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.31 E-value=0.015 Score=55.86 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999999854
No 442
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.015 Score=53.91 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~ 92 (395)
.+++|.|+.|||||||++.|+-.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCC
Confidence 89999999999999999999853
No 443
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.31 E-value=0.02 Score=53.08 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=24.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
..+.++.|.|++||||||++..+|...
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999765
No 444
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.31 E-value=0.015 Score=54.19 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+++.|+-.
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999999854
No 445
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.31 E-value=0.015 Score=56.16 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=23.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999964
No 446
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.015 Score=56.09 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+-.
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999999854
No 447
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.30 E-value=0.016 Score=56.57 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+..+++.|++|+||||+|+.+|+.+..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999987653
No 448
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.30 E-value=0.014 Score=56.41 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+-.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 449
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.30 E-value=0.015 Score=55.92 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=24.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|++|||||||++.|+-.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999999654
No 450
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.29 E-value=0.015 Score=56.08 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999954
No 451
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.29 E-value=0.014 Score=55.41 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++|||||||++.|+-
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcC
Confidence 4578999999999999999999985
No 452
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.29 E-value=0.016 Score=53.87 Aligned_cols=27 Identities=15% Similarity=0.432 Sum_probs=23.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|++|||||||.+.|+-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 357899999999999999999998543
No 453
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=95.28 E-value=0.015 Score=55.84 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||.+.|+-.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 454
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.27 E-value=0.015 Score=56.05 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999854
No 455
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.27 E-value=0.016 Score=53.09 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||.+.|+..
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999854
No 456
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.26 E-value=0.018 Score=56.57 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=25.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..+.+|+|.|++||||||++..|+..+..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999987643
No 457
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.26 E-value=0.024 Score=58.75 Aligned_cols=38 Identities=32% Similarity=0.389 Sum_probs=30.1
Q ss_pred HHHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 57 LMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 57 ~~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..+.+..++. ..+.|++.|++|+|||++|+.||..+..
T Consensus 183 ~le~l~~~L~-~~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 183 TIETILKRLT-IKKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred HHHHHHHHHh-cCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4455555554 4678899999999999999999998864
No 458
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.25 E-value=0.015 Score=56.29 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=23.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|++|||||||++.|+-.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999998543
No 459
>PRK08181 transposase; Validated
Probab=95.25 E-value=0.044 Score=53.19 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=26.1
Q ss_pred HhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 64 RFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 64 ~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
.+.++...++|.|++|+|||.++..++.++
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHHHHHHHHH
Confidence 455677889999999999999999999765
No 460
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.25 E-value=0.015 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+..++|+|..||||||+|++||-
T Consensus 37 ~~~QTlaiIG~NGSGKSTLakMlaG 61 (267)
T COG4167 37 REGQTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred cCCcEEEEEccCCCcHhHHHHHHhc
Confidence 4567899999999999999999984
No 461
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.24 E-value=0.016 Score=54.88 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|+.||||||+++.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999998643
No 462
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.24 E-value=0.016 Score=55.53 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|+.|||||||++.|+-.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 35789999999999999999999854
No 463
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.24 E-value=0.015 Score=54.72 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.||||||+.+.|+-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcC
Confidence 4578999999999999999999985
No 464
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.23 E-value=0.016 Score=54.61 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||.+.|+-.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999999953
No 465
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.23 E-value=0.016 Score=55.90 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++|||||||++.|+-
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVG 60 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4578999999999999999999984
No 466
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.23 E-value=0.017 Score=54.97 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|++|||||||++.|+-.
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35789999999999999999999964
No 467
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.22 E-value=0.016 Score=60.93 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
++-+.+.|+||+|||++++.||..++.+++.
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~ 118 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS 118 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 4569999999999999999999999887764
No 468
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.22 E-value=0.016 Score=55.50 Aligned_cols=26 Identities=23% Similarity=0.572 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||.+.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999999953
No 469
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.22 E-value=0.017 Score=53.07 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999853
No 470
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=95.22 E-value=0.017 Score=55.83 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=24.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|++|||||||++.|+-.+
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999999654
No 471
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.21 E-value=0.017 Score=55.03 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=23.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|+.|||||||.+.|+..+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 457899999999999999999998643
No 472
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.20 E-value=0.015 Score=54.95 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+..
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45789999999999999999999854
No 473
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.20 E-value=0.017 Score=55.52 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.++++.|++||||||+.+++-.
T Consensus 25 ~~gef~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 25 EEGEFLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhc
Confidence 4578999999999999999999975
No 474
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.4 Score=51.57 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
+..+.+.|++|+||||+|+.||+.+...
T Consensus 35 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 35 NHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4568999999999999999999998875
No 475
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.20 E-value=0.017 Score=54.86 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|++|||||||++.|+-.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 35789999999999999999999964
No 476
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.19 E-value=0.016 Score=55.99 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 29 PEGSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 46789999999999999999999853
No 477
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.18 E-value=0.017 Score=55.21 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+-.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999999853
No 478
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.18 E-value=0.15 Score=45.73 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=16.9
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLA 90 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La 90 (395)
++-++.|+.||||||+...+-
T Consensus 3 ~l~IvaG~NGsGKstv~~~~~ 23 (187)
T COG4185 3 RLDIVAGPNGSGKSTVYASTL 23 (187)
T ss_pred eEEEEecCCCCCceeeeeccc
Confidence 466788999999999975543
No 479
>PRK04195 replication factor C large subunit; Provisional
Probab=95.18 E-value=0.016 Score=60.82 Aligned_cols=30 Identities=27% Similarity=0.480 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.+.+.|.|++|+||||+++.||++++..++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~i 68 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVI 68 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 678999999999999999999999986554
No 480
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.18 E-value=0.018 Score=55.51 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=23.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
..+.+++|.|++|||||||++.|+-.+
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 357899999999999999999998643
No 481
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.17 E-value=0.018 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.493 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|++||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 482
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.17 E-value=0.018 Score=59.17 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
....++|.|++|+||||+|+.||+.++..++
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~ 65 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFE 65 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3457888999999999999999998876553
No 483
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.17 E-value=0.016 Score=48.05 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHH
Q psy6807 72 IVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 72 I~i~G~~GsGKSTlak~La~ 91 (395)
|+|.|.+|||||||.+.|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999985
No 484
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.17 E-value=0.018 Score=54.77 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=23.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
..+.+++|.|++|||||||++.|+-.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 28 PERQITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 357899999999999999999998643
No 485
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.16 E-value=0.018 Score=55.05 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||++.|+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999964
No 486
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.16 E-value=0.028 Score=48.28 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=26.5
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
.+++.++.+-|++|+|||.+++.||+.+=...
T Consensus 50 p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred CCCCEEEEeecCCCCcHHHHHHHHHHHHHhcc
Confidence 34667889999999999999999999853333
No 487
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.15 E-value=0.016 Score=57.63 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+.-+.++|+||+|||++++.+|+.++.+++
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 568999999999999999999999997765
No 488
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.15 E-value=0.018 Score=53.59 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||.+.|+-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999999854
No 489
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.15 E-value=0.018 Score=59.69 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.++-++|.|++|+|||++|+.+|.+++..++
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi 246 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFL 246 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 4567899999999999999999999887654
No 490
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.14 E-value=0.019 Score=54.25 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|++|||||||.+.|+-.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999999853
No 491
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.13 E-value=0.018 Score=54.57 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|++||||||+++.|+-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 457899999999999999999999643
No 492
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.12 E-value=0.023 Score=56.81 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=24.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+..+.|+|+|++||||||+.+.|.....
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999988664
No 493
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.12 E-value=0.018 Score=54.86 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+..++|.|++||||||+++.|+-
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4578999999999999999999985
No 494
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.11 E-value=0.019 Score=54.99 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|++|||||||++.|+-.+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 31 YRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457899999999999999999999644
No 495
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.11 E-value=0.017 Score=61.05 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=23.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+++..++|.|++||||||+++.|..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999999999975
No 496
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=95.10 E-value=0.019 Score=55.35 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++|||||||.+.|+-.
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 497
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.09 E-value=0.022 Score=57.60 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=24.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
..+..++|.|++|+||||+++.+++.+.
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~ 80 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELE 80 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998874
No 498
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.09 E-value=0.03 Score=56.49 Aligned_cols=30 Identities=30% Similarity=0.532 Sum_probs=24.5
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
...++.|.+.|+||+|||.+|-.+|++||-
T Consensus 47 K~aGr~iLiaGppGtGKTAlA~~ia~eLG~ 76 (398)
T PF06068_consen 47 KIAGRAILIAGPPGTGKTALAMAIAKELGE 76 (398)
T ss_dssp --TT-EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred cccCcEEEEeCCCCCCchHHHHHHHHHhCC
Confidence 346799999999999999999999999983
No 499
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=95.08 E-value=0.019 Score=55.12 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|++|||||||++.|+-.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 457899999999999999999999543
No 500
>PRK06851 hypothetical protein; Provisional
Probab=95.08 E-value=0.066 Score=54.23 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.++++|.|+||+||||+++.+++.+.
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~ 239 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAE 239 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999999873
Done!