Query psy6807
Match_columns 395
No_of_seqs 291 out of 1957
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 18:52:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hlc_A DTMP kinase, thymidylat 99.9 3.1E-23 1E-27 191.2 16.5 199 69-297 2-200 (205)
2 4edh_A DTMP kinase, thymidylat 99.9 1.5E-22 5.2E-27 187.7 16.5 196 68-295 5-204 (213)
3 2jaq_A Deoxyguanosine kinase; 99.9 7.6E-22 2.6E-26 178.2 19.3 191 70-295 1-198 (205)
4 3ld9_A DTMP kinase, thymidylat 99.9 7.7E-23 2.6E-27 190.9 12.7 192 66-294 18-212 (223)
5 4tmk_A Protein (thymidylate ki 99.9 2E-21 6.8E-26 180.2 18.9 195 68-295 2-204 (213)
6 3tmk_A Thymidylate kinase; pho 99.9 4.7E-22 1.6E-26 184.8 13.8 195 67-297 3-202 (216)
7 3v9p_A DTMP kinase, thymidylat 99.9 2.4E-22 8.3E-27 188.1 11.5 195 67-294 23-223 (227)
8 3lv8_A DTMP kinase, thymidylat 99.9 1.8E-21 6.1E-26 183.2 16.4 196 68-296 26-227 (236)
9 2ocp_A DGK, deoxyguanosine kin 99.9 1.4E-21 4.9E-26 182.9 13.8 215 68-294 1-230 (241)
10 3hjn_A DTMP kinase, thymidylat 99.8 2.5E-20 8.6E-25 170.6 16.9 191 70-297 1-191 (197)
11 4eaq_A DTMP kinase, thymidylat 99.8 6.8E-20 2.3E-24 171.3 12.6 199 67-295 24-222 (229)
12 1p5z_B DCK, deoxycytidine kina 99.8 1.1E-19 3.6E-24 172.5 13.1 215 66-294 21-255 (263)
13 2vp4_A Deoxynucleoside kinase; 99.8 3.1E-19 1.1E-23 166.3 12.2 199 67-294 18-221 (230)
14 1p6x_A Thymidine kinase; P-loo 99.8 3.1E-19 1E-23 175.7 11.1 186 68-280 6-219 (334)
15 1of1_A Thymidine kinase; trans 99.8 8.9E-19 3E-23 174.5 12.6 170 68-264 48-244 (376)
16 1e2k_A Thymidine kinase; trans 99.8 1.3E-18 4.3E-23 171.1 12.3 170 68-264 3-199 (331)
17 2z0h_A DTMP kinase, thymidylat 99.8 6.7E-18 2.3E-22 151.7 14.5 186 70-295 1-189 (197)
18 2plr_A DTMP kinase, probable t 99.8 2.2E-17 7.4E-22 149.7 17.8 191 68-294 3-204 (213)
19 3kb2_A SPBC2 prophage-derived 99.8 2.6E-17 8.8E-22 144.4 16.5 161 70-294 2-163 (173)
20 1nn5_A Similar to deoxythymidy 99.7 3.6E-17 1.2E-21 148.9 17.8 192 67-295 7-198 (215)
21 2pbr_A DTMP kinase, thymidylat 99.7 4E-17 1.4E-21 146.0 16.9 186 70-295 1-189 (195)
22 2wwf_A Thymidilate kinase, put 99.7 7.8E-17 2.7E-21 146.5 15.6 189 68-295 9-197 (212)
23 2v54_A DTMP kinase, thymidylat 99.7 6.9E-17 2.4E-21 146.0 15.1 185 68-295 3-188 (204)
24 1osn_A Thymidine kinase, VZV-T 99.7 5E-18 1.7E-22 167.4 5.4 175 67-264 10-211 (341)
25 1gtv_A TMK, thymidylate kinase 99.6 4.3E-18 1.5E-22 155.1 -2.8 199 70-295 1-211 (214)
26 1tev_A UMP-CMP kinase; ploop, 99.6 1.5E-14 5.2E-19 129.0 14.4 186 68-294 2-191 (196)
27 2rhm_A Putative kinase; P-loop 99.6 4.9E-15 1.7E-19 132.4 9.8 177 68-293 4-184 (193)
28 2c95_A Adenylate kinase 1; tra 99.5 5.4E-14 1.8E-18 125.9 11.9 175 67-294 7-190 (196)
29 3lw7_A Adenylate kinase relate 99.5 2.9E-13 1E-17 117.9 15.0 168 70-294 2-173 (179)
30 1aky_A Adenylate kinase; ATP:A 99.5 7.2E-14 2.4E-18 128.4 11.6 183 67-294 2-216 (220)
31 3t61_A Gluconokinase; PSI-biol 99.5 1.3E-13 4.3E-18 125.0 13.1 163 65-294 14-176 (202)
32 1nks_A Adenylate kinase; therm 99.5 1.2E-13 4E-18 122.9 12.4 73 215-294 115-192 (194)
33 2cdn_A Adenylate kinase; phosp 99.5 1E-13 3.5E-18 125.5 12.1 178 66-294 17-198 (201)
34 3be4_A Adenylate kinase; malar 99.5 1.2E-13 4E-18 127.1 12.7 176 68-293 4-215 (217)
35 2bwj_A Adenylate kinase 5; pho 99.5 4.5E-14 1.5E-18 126.8 9.6 177 69-294 12-193 (199)
36 3umf_A Adenylate kinase; rossm 99.5 6.6E-13 2.3E-17 123.1 16.0 178 67-294 27-210 (217)
37 3sr0_A Adenylate kinase; phosp 99.5 2.1E-13 7E-18 125.5 11.9 179 70-296 1-203 (206)
38 1ukz_A Uridylate kinase; trans 99.5 5.9E-13 2E-17 120.4 14.3 177 67-294 13-198 (203)
39 3fb4_A Adenylate kinase; psych 99.5 1.8E-13 6.1E-18 125.0 9.9 29 70-98 1-29 (216)
40 3dl0_A Adenylate kinase; phosp 99.4 1.2E-13 4E-18 126.3 8.2 30 70-99 1-30 (216)
41 3tlx_A Adenylate kinase 2; str 99.4 5.1E-13 1.7E-17 125.4 12.0 182 67-294 27-240 (243)
42 1ak2_A Adenylate kinase isoenz 99.4 4.4E-13 1.5E-17 124.6 11.2 32 67-98 14-45 (233)
43 1qf9_A UMP/CMP kinase, protein 99.4 6.7E-13 2.3E-17 118.0 11.9 177 69-294 6-188 (194)
44 2vli_A Antibiotic resistance p 99.4 2.9E-12 9.8E-17 113.5 15.5 179 68-309 4-183 (183)
45 4eun_A Thermoresistant glucoki 99.4 3E-12 1E-16 116.0 15.3 164 67-294 27-190 (200)
46 2xb4_A Adenylate kinase; ATP-b 99.4 1.4E-12 4.6E-17 120.6 12.7 29 70-98 1-29 (223)
47 3cm0_A Adenylate kinase; ATP-b 99.4 8.2E-13 2.8E-17 117.5 10.3 171 68-294 3-183 (186)
48 3a4m_A L-seryl-tRNA(SEC) kinas 99.4 2.2E-12 7.6E-17 122.1 13.7 166 68-295 3-171 (260)
49 1kht_A Adenylate kinase; phosp 99.4 3.1E-12 1.1E-16 113.6 13.8 74 215-294 114-190 (192)
50 2pt5_A Shikimate kinase, SK; a 99.4 6.5E-13 2.2E-17 116.2 9.1 67 216-294 93-160 (168)
51 1zak_A Adenylate kinase; ATP:A 99.4 2.1E-12 7.2E-17 118.7 12.4 32 68-99 4-35 (222)
52 3vaa_A Shikimate kinase, SK; s 99.4 5.2E-12 1.8E-16 114.4 14.6 165 68-294 24-192 (199)
53 4i1u_A Dephospho-COA kinase; s 99.4 1.9E-13 6.5E-18 126.1 4.7 182 67-295 7-199 (210)
54 1e4v_A Adenylate kinase; trans 99.4 4.4E-12 1.5E-16 116.0 13.7 29 70-98 1-29 (214)
55 1knq_A Gluconate kinase; ALFA/ 99.4 2.8E-11 9.5E-16 106.7 17.8 164 67-294 6-170 (175)
56 1zd8_A GTP:AMP phosphotransfer 99.3 5.5E-12 1.9E-16 116.4 12.3 31 68-98 6-36 (227)
57 3trf_A Shikimate kinase, SK; a 99.3 5.9E-12 2E-16 112.0 11.5 31 68-98 4-34 (185)
58 1ly1_A Polynucleotide kinase; 99.3 2.3E-11 7.8E-16 107.0 13.5 162 69-293 2-168 (181)
59 1e6c_A Shikimate kinase; phosp 99.3 1.9E-11 6.5E-16 107.2 11.5 30 69-98 2-31 (173)
60 1zuh_A Shikimate kinase; alpha 99.3 1E-11 3.4E-16 109.0 9.7 32 67-98 5-36 (168)
61 3iij_A Coilin-interacting nucl 99.3 6.8E-12 2.3E-16 111.3 8.6 31 68-98 10-40 (180)
62 2qt1_A Nicotinamide riboside k 99.3 5.8E-11 2E-15 107.7 13.8 74 215-294 129-202 (207)
63 3czq_A Putative polyphosphate 99.3 6.3E-12 2.1E-16 121.6 7.3 168 67-279 84-259 (304)
64 1y63_A LMAJ004144AAA protein; 99.2 2.1E-11 7.2E-16 109.1 9.5 31 68-98 9-40 (184)
65 3gmt_A Adenylate kinase; ssgci 99.2 2.4E-11 8.1E-16 113.5 9.5 32 68-99 7-38 (230)
66 2grj_A Dephospho-COA kinase; T 99.2 1.2E-11 4.1E-16 112.4 6.8 38 67-107 10-47 (192)
67 1jjv_A Dephospho-COA kinase; P 99.2 3E-11 1E-15 109.4 9.4 28 70-98 3-30 (206)
68 1uj2_A Uridine-cytidine kinase 99.2 5.7E-11 1.9E-15 111.6 11.3 73 216-295 151-231 (252)
69 1qhx_A CPT, protein (chloramph 99.2 2.7E-10 9.1E-15 100.4 14.3 30 69-98 3-32 (178)
70 1via_A Shikimate kinase; struc 99.2 3.4E-11 1.2E-15 106.4 8.5 29 70-98 5-33 (175)
71 1vht_A Dephospho-COA kinase; s 99.2 5.7E-11 1.9E-15 108.7 10.2 30 68-98 3-32 (218)
72 1m7g_A Adenylylsulfate kinase; 99.2 3E-10 1E-14 103.6 14.7 29 66-94 22-50 (211)
73 2if2_A Dephospho-COA kinase; a 99.2 1.5E-11 5E-16 111.2 5.7 66 216-295 124-189 (204)
74 2iyv_A Shikimate kinase, SK; t 99.2 1.6E-11 5.3E-16 109.2 5.5 30 69-98 2-31 (184)
75 2yvu_A Probable adenylyl-sulfa 99.2 2.5E-10 8.5E-15 101.8 12.7 31 66-96 10-40 (186)
76 2qor_A Guanylate kinase; phosp 99.1 6.4E-11 2.2E-15 107.5 8.4 27 68-94 11-37 (204)
77 1cke_A CK, MSSA, protein (cyti 99.1 5.1E-10 1.7E-14 102.4 14.4 30 69-98 5-34 (227)
78 1uf9_A TT1252 protein; P-loop, 99.1 3.4E-11 1.2E-15 108.1 6.1 34 64-98 3-36 (203)
79 4e22_A Cytidylate kinase; P-lo 99.1 2.2E-10 7.5E-15 107.9 11.9 34 65-98 23-56 (252)
80 3nwj_A ATSK2; P loop, shikimat 99.1 1.3E-10 4.3E-15 110.0 10.0 42 57-98 34-77 (250)
81 2f6r_A COA synthase, bifunctio 99.1 9E-11 3.1E-15 112.5 9.0 30 68-98 74-103 (281)
82 1kag_A SKI, shikimate kinase I 99.1 2.2E-10 7.5E-15 100.5 9.1 30 69-98 4-33 (173)
83 1q3t_A Cytidylate kinase; nucl 99.1 5E-10 1.7E-14 104.0 10.1 33 67-99 14-46 (236)
84 2h92_A Cytidylate kinase; ross 99.1 2.6E-09 9E-14 97.3 14.6 31 69-99 3-33 (219)
85 3czp_A Putative polyphosphate 99.0 3.4E-10 1.2E-14 116.8 9.4 169 67-280 41-217 (500)
86 3hdt_A Putative kinase; struct 99.0 1.4E-09 4.8E-14 101.1 11.9 32 68-99 13-44 (223)
87 3ake_A Cytidylate kinase; CMP 99.0 7.4E-09 2.5E-13 93.1 15.4 30 70-99 3-32 (208)
88 1ltq_A Polynucleotide kinase; 99.0 2E-09 7E-14 102.9 11.7 140 69-261 2-145 (301)
89 3r20_A Cytidylate kinase; stru 99.0 3.9E-09 1.3E-13 98.7 12.6 32 67-98 7-38 (233)
90 3fdi_A Uncharacterized protein 99.0 2.4E-09 8.3E-14 97.6 10.2 31 69-99 6-36 (201)
91 3czp_A Putative polyphosphate 99.0 8.7E-10 3E-14 113.7 7.9 169 67-280 298-474 (500)
92 3zvl_A Bifunctional polynucleo 98.9 6.2E-09 2.1E-13 105.1 13.5 141 67-279 256-397 (416)
93 3uie_A Adenylyl-sulfate kinase 98.9 9E-09 3.1E-13 92.9 13.1 30 65-94 21-50 (200)
94 2bbw_A Adenylate kinase 4, AK4 98.9 9.6E-09 3.3E-13 95.8 13.4 34 65-98 23-56 (246)
95 3tr0_A Guanylate kinase, GMP k 98.9 3.8E-08 1.3E-12 88.3 15.9 27 68-94 6-32 (205)
96 2pez_A Bifunctional 3'-phospho 98.9 2.1E-08 7.1E-13 88.6 14.0 27 67-93 3-29 (179)
97 1ex7_A Guanylate kinase; subst 98.9 2.8E-09 9.4E-14 96.4 7.6 177 69-296 1-183 (186)
98 1x6v_B Bifunctional 3'-phospho 98.8 3.3E-08 1.1E-12 104.5 14.0 31 68-98 51-84 (630)
99 3tau_A Guanylate kinase, GMP k 98.8 1.9E-09 6.3E-14 98.4 3.3 29 66-94 5-33 (208)
100 1gvn_B Zeta; postsegregational 98.8 1.8E-07 6.1E-12 89.8 16.3 43 56-98 14-64 (287)
101 2j41_A Guanylate kinase; GMP, 98.8 4E-08 1.4E-12 88.2 10.8 27 67-93 4-30 (207)
102 3asz_A Uridine kinase; cytidin 98.7 9.9E-08 3.4E-12 86.3 13.3 70 216-293 125-203 (211)
103 2gks_A Bifunctional SAT/APS ki 98.7 5.7E-08 1.9E-12 101.5 13.1 30 67-96 370-399 (546)
104 3rhf_A Putative polyphosphate 98.7 5.5E-09 1.9E-13 99.9 3.7 183 68-296 74-270 (289)
105 2ze6_A Isopentenyl transferase 98.7 5.3E-08 1.8E-12 91.7 10.4 32 70-101 2-33 (253)
106 2p5t_B PEZT; postsegregational 98.7 7.1E-08 2.4E-12 90.5 10.8 29 67-95 30-58 (253)
107 3a00_A Guanylate kinase, GMP k 98.6 2E-08 6.7E-13 89.8 5.1 68 217-296 115-183 (186)
108 2bdt_A BH3686; alpha-beta prot 98.6 3.1E-07 1.1E-11 81.6 12.8 27 69-95 2-28 (189)
109 2axn_A 6-phosphofructo-2-kinas 98.6 1.3E-06 4.3E-11 90.8 17.7 33 67-99 33-65 (520)
110 3a8t_A Adenylate isopentenyltr 98.6 2.3E-07 8E-12 91.1 11.3 171 67-261 38-213 (339)
111 1a7j_A Phosphoribulokinase; tr 98.5 1.7E-07 5.7E-12 90.2 9.0 28 67-94 3-30 (290)
112 1m8p_A Sulfate adenylyltransfe 98.5 4E-07 1.4E-11 95.6 10.2 29 67-95 394-422 (573)
113 1rz3_A Hypothetical protein rb 98.4 5.6E-07 1.9E-11 81.2 8.4 40 55-94 8-47 (201)
114 2jeo_A Uridine-cytidine kinase 98.4 1.3E-06 4.4E-11 81.3 10.8 38 59-97 16-53 (245)
115 1zp6_A Hypothetical protein AT 98.4 2E-06 6.7E-11 76.2 11.2 28 67-94 7-34 (191)
116 3ney_A 55 kDa erythrocyte memb 98.3 4.2E-07 1.4E-11 82.7 5.3 27 68-94 18-44 (197)
117 3lnc_A Guanylate kinase, GMP k 98.3 2.6E-06 8.8E-11 78.3 10.4 28 67-94 25-53 (231)
118 3c8u_A Fructokinase; YP_612366 98.3 2.9E-06 1E-10 76.8 10.4 38 57-94 7-47 (208)
119 1svm_A Large T antigen; AAA+ f 98.2 3.5E-09 1.2E-13 105.8 -11.3 63 201-263 283-350 (377)
120 1bif_A 6-phosphofructo-2-kinas 98.2 3.9E-05 1.3E-09 78.3 17.7 34 66-99 36-69 (469)
121 3cr8_A Sulfate adenylyltranfer 98.1 1E-05 3.5E-10 84.5 11.8 28 67-94 367-394 (552)
122 3d3q_A TRNA delta(2)-isopenten 98.0 1.5E-05 5E-10 78.4 8.8 31 70-100 8-38 (340)
123 3ch4_B Pmkase, phosphomevalona 98.0 7.5E-05 2.6E-09 68.0 12.7 29 67-95 9-37 (202)
124 3tqc_A Pantothenate kinase; bi 98.0 5.7E-06 1.9E-10 80.8 5.4 27 68-94 91-117 (321)
125 1s96_A Guanylate kinase, GMP k 98.0 3.1E-05 1.1E-09 71.3 9.8 28 67-94 14-41 (219)
126 1lvg_A Guanylate kinase, GMP k 97.9 0.00082 2.8E-08 60.2 18.0 27 68-94 3-29 (198)
127 3crm_A TRNA delta(2)-isopenten 97.8 5E-05 1.7E-09 74.1 8.3 33 69-101 5-37 (323)
128 3exa_A TRNA delta(2)-isopenten 97.6 5.7E-05 2E-09 73.4 6.5 35 68-102 2-36 (322)
129 3foz_A TRNA delta(2)-isopenten 97.5 0.00037 1.3E-08 67.5 9.3 36 68-103 9-44 (316)
130 4gp7_A Metallophosphoesterase; 97.4 0.0052 1.8E-07 53.5 15.7 24 67-90 7-30 (171)
131 3eph_A TRNA isopentenyltransfe 97.4 0.00031 1E-08 70.5 7.7 34 69-102 2-35 (409)
132 1kgd_A CASK, peripheral plasma 97.3 0.00014 4.7E-09 64.2 4.0 27 68-94 4-30 (180)
133 2ga8_A Hypothetical 39.9 kDa p 97.3 0.00011 3.8E-09 72.5 3.5 43 55-97 5-52 (359)
134 1odf_A YGR205W, hypothetical 3 97.2 0.00037 1.3E-08 66.8 5.6 29 67-95 29-57 (290)
135 1g8f_A Sulfate adenylyltransfe 97.1 0.00034 1.1E-08 72.3 4.7 29 67-95 393-421 (511)
136 1dek_A Deoxynucleoside monopho 96.9 0.00047 1.6E-08 64.5 3.9 29 70-98 2-30 (241)
137 1kjw_A Postsynaptic density pr 96.9 0.0012 4E-08 63.5 6.6 25 67-94 103-127 (295)
138 1sq5_A Pantothenate kinase; P- 96.9 0.00074 2.5E-08 65.0 5.1 28 67-94 78-105 (308)
139 1ye8_A Protein THEP1, hypothet 96.8 0.00067 2.3E-08 60.1 3.8 26 70-95 1-26 (178)
140 3t15_A Ribulose bisphosphate c 96.8 0.00065 2.2E-08 64.8 3.8 31 68-98 35-65 (293)
141 1znw_A Guanylate kinase, GMP k 96.8 0.00087 3E-08 60.3 3.9 28 67-94 18-45 (207)
142 1z6g_A Guanylate kinase; struc 96.7 0.00074 2.5E-08 61.5 3.5 34 59-93 14-47 (218)
143 3ec2_A DNA replication protein 96.7 0.00083 2.8E-08 58.7 3.4 28 67-94 36-63 (180)
144 3aez_A Pantothenate kinase; tr 96.7 0.001 3.6E-08 64.3 4.2 28 67-94 88-115 (312)
145 1jbk_A CLPB protein; beta barr 96.6 0.0026 9E-08 54.6 5.7 40 57-96 30-70 (195)
146 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.0013 4.4E-08 60.5 3.9 31 68-98 38-68 (262)
147 1htw_A HI0065; nucleotide-bind 96.5 0.0017 5.7E-08 56.6 4.1 27 67-93 31-57 (158)
148 1xjc_A MOBB protein homolog; s 96.5 0.0016 5.3E-08 57.6 3.8 29 68-96 3-31 (169)
149 3b9p_A CG5977-PA, isoform A; A 96.5 0.0016 5.4E-08 61.4 4.1 31 68-98 53-83 (297)
150 3bos_A Putative DNA replicatio 96.5 0.0041 1.4E-07 55.8 6.6 29 68-96 51-79 (242)
151 1lv7_A FTSH; alpha/beta domain 96.5 0.0017 5.6E-08 60.1 3.9 30 69-98 45-74 (257)
152 2qmh_A HPR kinase/phosphorylas 96.5 0.00099 3.4E-08 60.6 2.3 34 67-101 32-65 (205)
153 3h4m_A Proteasome-activating n 96.5 0.0016 5.4E-08 61.0 3.7 32 67-98 49-80 (285)
154 3cf0_A Transitional endoplasmi 96.4 0.0016 5.5E-08 62.1 3.7 32 67-98 47-78 (301)
155 2xkx_A Disks large homolog 4; 96.4 0.013 4.4E-07 63.0 10.7 171 68-297 530-707 (721)
156 2p65_A Hypothetical protein PF 96.4 0.0032 1.1E-07 54.1 4.8 40 57-96 30-70 (187)
157 1d2n_A N-ethylmaleimide-sensit 96.4 0.0028 9.5E-08 59.2 4.8 32 67-98 62-93 (272)
158 1njg_A DNA polymerase III subu 96.3 0.0042 1.4E-07 55.2 5.7 29 69-97 45-73 (250)
159 2ehv_A Hypothetical protein PH 96.3 0.002 6.8E-08 58.7 3.5 25 67-91 28-52 (251)
160 2x8a_A Nuclear valosin-contain 96.3 0.002 6.9E-08 60.9 3.3 27 72-98 47-73 (274)
161 3tvt_A Disks large 1 tumor sup 96.3 0.0042 1.4E-07 59.6 5.6 27 68-97 99-125 (292)
162 4a74_A DNA repair and recombin 96.3 0.0022 7.6E-08 57.6 3.4 35 59-93 15-49 (231)
163 3tif_A Uncharacterized ABC tra 96.2 0.0021 7.2E-08 59.5 3.1 25 67-91 29-53 (235)
164 1in4_A RUVB, holliday junction 96.2 0.0026 8.8E-08 61.7 3.8 29 69-97 51-79 (334)
165 1np6_A Molybdopterin-guanine d 96.2 0.0033 1.1E-07 55.6 4.0 26 69-94 6-31 (174)
166 2eyu_A Twitching motility prot 96.2 0.0032 1.1E-07 59.2 4.2 28 67-94 23-50 (261)
167 4b4t_K 26S protease regulatory 96.2 0.0027 9.2E-08 64.1 3.9 32 68-99 205-236 (428)
168 3hws_A ATP-dependent CLP prote 96.2 0.0024 8.1E-08 62.5 3.3 31 68-98 50-80 (363)
169 2kjq_A DNAA-related protein; s 96.2 0.0028 9.6E-08 54.3 3.4 27 68-94 35-61 (149)
170 4b4t_M 26S protease regulatory 96.1 0.0029 9.8E-08 64.1 3.8 33 67-99 213-245 (434)
171 2pcj_A ABC transporter, lipopr 96.1 0.0023 7.8E-08 58.8 2.8 25 67-91 28-52 (224)
172 4b4t_L 26S protease subunit RP 96.1 0.0031 1E-07 63.9 3.8 32 68-99 214-245 (437)
173 2cbz_A Multidrug resistance-as 96.1 0.0027 9.4E-08 58.7 3.1 26 67-92 29-54 (237)
174 2r62_A Cell division protease 96.1 0.0019 6.6E-08 59.9 2.1 31 69-99 44-74 (268)
175 1ofh_A ATP-dependent HSL prote 96.1 0.003 1E-07 59.4 3.4 31 68-98 49-79 (310)
176 3eie_A Vacuolar protein sortin 96.1 0.0034 1.2E-07 60.4 3.8 30 69-98 51-80 (322)
177 2i3b_A HCR-ntpase, human cance 96.1 0.0033 1.1E-07 56.3 3.5 25 70-94 2-26 (189)
178 1ixz_A ATP-dependent metallopr 96.1 0.003 1E-07 58.3 3.2 26 71-96 51-76 (254)
179 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0039 1.3E-07 55.8 3.9 27 67-93 21-47 (235)
180 1g41_A Heat shock protein HSLU 96.0 0.0029 1E-07 64.2 3.3 30 69-98 50-79 (444)
181 3d8b_A Fidgetin-like protein 1 96.0 0.0038 1.3E-07 61.1 4.1 32 67-98 115-146 (357)
182 4b4t_J 26S protease regulatory 96.0 0.0031 1E-07 63.2 3.3 32 68-99 181-212 (405)
183 1rj9_A FTSY, signal recognitio 96.0 0.004 1.4E-07 60.0 4.1 27 68-94 101-127 (304)
184 1b0u_A Histidine permease; ABC 96.0 0.0032 1.1E-07 59.2 3.1 25 67-91 30-54 (262)
185 2v9p_A Replication protein E1; 96.0 0.0041 1.4E-07 60.0 4.0 35 58-93 116-150 (305)
186 1um8_A ATP-dependent CLP prote 96.0 0.0038 1.3E-07 61.2 3.8 31 68-98 71-101 (376)
187 1mv5_A LMRA, multidrug resista 96.0 0.0033 1.1E-07 58.3 3.2 26 67-92 26-51 (243)
188 2d2e_A SUFC protein; ABC-ATPas 96.0 0.0038 1.3E-07 58.2 3.5 25 67-91 27-51 (250)
189 3b9q_A Chloroplast SRP recepto 96.0 0.0046 1.6E-07 59.5 4.2 27 68-94 99-125 (302)
190 2pze_A Cystic fibrosis transme 96.0 0.0032 1.1E-07 57.9 3.0 26 67-92 32-57 (229)
191 3gfo_A Cobalt import ATP-bindi 96.0 0.0031 1.1E-07 59.9 2.9 25 67-91 32-56 (275)
192 4g1u_C Hemin import ATP-bindin 96.0 0.0032 1.1E-07 59.4 3.0 25 67-91 35-59 (266)
193 2ff7_A Alpha-hemolysin translo 96.0 0.0033 1.1E-07 58.6 3.0 25 67-91 33-57 (247)
194 1ji0_A ABC transporter; ATP bi 96.0 0.0033 1.1E-07 58.3 3.0 25 67-91 30-54 (240)
195 2w58_A DNAI, primosome compone 96.0 0.0046 1.6E-07 54.7 3.9 26 70-95 55-80 (202)
196 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.0042 1.4E-07 60.0 3.8 31 68-98 44-75 (322)
197 1g6h_A High-affinity branched- 95.9 0.0035 1.2E-07 58.7 3.0 25 67-91 31-55 (257)
198 2olj_A Amino acid ABC transpor 95.9 0.0037 1.3E-07 59.0 3.1 25 67-91 48-72 (263)
199 3n70_A Transport activator; si 95.9 0.0063 2.2E-07 51.4 4.3 29 65-93 20-48 (145)
200 1sgw_A Putative ABC transporte 95.9 0.0031 1.1E-07 57.6 2.6 25 67-91 33-57 (214)
201 2f1r_A Molybdopterin-guanine d 95.9 0.0022 7.6E-08 56.5 1.5 28 69-96 2-29 (171)
202 3e70_C DPA, signal recognition 95.9 0.0051 1.7E-07 59.9 4.2 28 67-94 127-154 (328)
203 4b4t_H 26S protease regulatory 95.9 0.0039 1.3E-07 63.5 3.4 33 67-99 241-273 (467)
204 3upu_A ATP-dependent DNA helic 95.9 0.0097 3.3E-07 60.2 6.4 58 37-95 14-71 (459)
205 2zu0_C Probable ATP-dependent 95.9 0.0045 1.5E-07 58.3 3.6 25 67-91 44-68 (267)
206 1vma_A Cell division protein F 95.9 0.0052 1.8E-07 59.2 4.1 27 68-94 103-129 (306)
207 2ixe_A Antigen peptide transpo 95.9 0.0039 1.3E-07 58.9 3.1 25 67-91 43-67 (271)
208 2ghi_A Transport protein; mult 95.9 0.004 1.4E-07 58.5 3.1 25 67-91 44-68 (260)
209 1vpl_A ABC transporter, ATP-bi 95.9 0.004 1.4E-07 58.4 3.1 25 67-91 39-63 (256)
210 3syl_A Protein CBBX; photosynt 95.9 0.0047 1.6E-07 58.3 3.7 30 67-96 65-94 (309)
211 2cvh_A DNA repair and recombin 95.8 0.0051 1.7E-07 54.8 3.6 33 58-91 9-42 (220)
212 1l8q_A Chromosomal replication 95.8 0.0097 3.3E-07 56.9 5.8 26 68-93 36-61 (324)
213 2qp9_X Vacuolar protein sortin 95.8 0.0045 1.5E-07 60.6 3.5 30 69-98 84-113 (355)
214 1n0w_A DNA repair protein RAD5 95.8 0.0047 1.6E-07 56.0 3.3 35 58-92 13-47 (243)
215 3b85_A Phosphate starvation-in 95.8 0.0043 1.5E-07 56.4 3.0 26 67-92 20-45 (208)
216 2onk_A Molybdate/tungstate ABC 95.8 0.005 1.7E-07 57.2 3.5 23 70-92 25-47 (240)
217 2yz2_A Putative ABC transporte 95.8 0.0046 1.6E-07 58.2 3.1 25 67-91 31-55 (266)
218 1iy2_A ATP-dependent metallopr 95.8 0.0047 1.6E-07 57.9 3.2 25 71-95 75-99 (278)
219 2qi9_C Vitamin B12 import ATP- 95.8 0.0044 1.5E-07 57.9 3.0 26 67-92 24-49 (249)
220 4b4t_I 26S protease regulatory 95.7 0.0056 1.9E-07 61.8 3.9 33 67-99 214-246 (437)
221 2px0_A Flagellar biosynthesis 95.7 0.0059 2E-07 58.5 3.8 28 67-94 103-130 (296)
222 2ihy_A ABC transporter, ATP-bi 95.7 0.0046 1.6E-07 58.8 3.0 25 67-91 45-69 (279)
223 2chg_A Replication factor C sm 95.7 0.0061 2.1E-07 53.5 3.6 26 70-95 39-64 (226)
224 2wsm_A Hydrogenase expression/ 95.7 0.011 3.7E-07 52.9 5.2 36 59-94 19-55 (221)
225 2nq2_C Hypothetical ABC transp 95.7 0.0048 1.6E-07 57.7 2.9 26 67-92 29-54 (253)
226 1c9k_A COBU, adenosylcobinamid 95.7 0.0029 1E-07 56.4 1.3 22 71-92 1-22 (180)
227 3pfi_A Holliday junction ATP-d 95.7 0.0056 1.9E-07 58.7 3.4 31 68-98 54-84 (338)
228 2og2_A Putative signal recogni 95.7 0.0072 2.4E-07 59.6 4.2 27 68-94 156-182 (359)
229 3fvq_A Fe(3+) IONS import ATP- 95.6 0.0058 2E-07 60.3 3.4 26 67-92 28-53 (359)
230 3uk6_A RUVB-like 2; hexameric 95.6 0.0068 2.3E-07 58.7 3.7 27 69-95 70-96 (368)
231 3vfd_A Spastin; ATPase, microt 95.6 0.0077 2.6E-07 59.4 4.2 31 68-98 147-177 (389)
232 2orw_A Thymidine kinase; TMTK, 95.6 0.0079 2.7E-07 53.4 3.8 26 68-93 2-27 (184)
233 1cr0_A DNA primase/helicase; R 95.6 0.0075 2.6E-07 57.0 3.8 35 58-93 25-59 (296)
234 1fnn_A CDC6P, cell division co 95.5 0.01 3.6E-07 57.4 4.8 25 71-95 46-70 (389)
235 2yyz_A Sugar ABC transporter, 95.5 0.0072 2.4E-07 59.6 3.7 26 67-92 27-52 (359)
236 3rlf_A Maltose/maltodextrin im 95.5 0.0072 2.5E-07 60.1 3.6 26 67-92 27-52 (381)
237 1z47_A CYSA, putative ABC-tran 95.5 0.007 2.4E-07 59.6 3.5 25 67-91 39-63 (355)
238 1sxj_D Activator 1 41 kDa subu 95.5 0.016 5.4E-07 55.5 6.0 39 57-95 45-84 (353)
239 2it1_A 362AA long hypothetical 95.5 0.0074 2.5E-07 59.6 3.6 25 67-91 27-51 (362)
240 1sxj_A Activator 1 95 kDa subu 95.5 0.0073 2.5E-07 62.1 3.7 30 69-98 77-106 (516)
241 1lw7_A Transcriptional regulat 95.5 0.0069 2.4E-07 59.4 3.3 28 69-96 170-197 (365)
242 2v1u_A Cell division control p 95.5 0.0093 3.2E-07 57.5 4.2 27 67-93 42-68 (387)
243 2ewv_A Twitching motility prot 95.5 0.0089 3E-07 59.1 4.1 28 67-94 134-161 (372)
244 1v43_A Sugar-binding transport 95.5 0.0077 2.6E-07 59.7 3.6 25 67-91 35-59 (372)
245 2c9o_A RUVB-like 1; hexameric 95.5 0.0076 2.6E-07 61.0 3.6 26 69-94 63-88 (456)
246 2qby_B CDC6 homolog 3, cell di 95.4 0.0073 2.5E-07 58.6 3.3 27 67-93 43-69 (384)
247 2bbs_A Cystic fibrosis transme 95.4 0.0065 2.2E-07 58.1 2.9 26 67-92 62-87 (290)
248 2yhs_A FTSY, cell division pro 95.4 0.0093 3.2E-07 61.3 4.1 27 68-94 292-318 (503)
249 4fcw_A Chaperone protein CLPB; 95.4 0.01 3.6E-07 55.9 4.2 26 70-95 48-73 (311)
250 1g29_1 MALK, maltose transport 95.4 0.0082 2.8E-07 59.5 3.5 25 67-91 27-51 (372)
251 2dr3_A UPF0273 protein PH0284; 95.4 0.009 3.1E-07 54.1 3.6 27 67-93 21-47 (247)
252 1hqc_A RUVB; extended AAA-ATPa 95.4 0.0065 2.2E-07 57.7 2.7 31 68-98 37-67 (324)
253 3tui_C Methionine import ATP-b 95.4 0.0089 3.1E-07 59.1 3.6 25 67-91 52-76 (366)
254 3jvv_A Twitching mobility prot 95.4 0.0099 3.4E-07 58.5 4.0 28 67-94 121-148 (356)
255 2pjz_A Hypothetical protein ST 95.3 0.0076 2.6E-07 56.8 3.0 23 69-91 30-52 (263)
256 2b8t_A Thymidine kinase; deoxy 95.3 0.012 4.1E-07 54.2 4.2 30 65-94 8-37 (223)
257 2gza_A Type IV secretion syste 95.3 0.0057 1.9E-07 60.2 2.1 28 67-94 173-200 (361)
258 3m6a_A ATP-dependent protease 95.3 0.011 3.6E-07 61.5 4.1 31 68-98 107-137 (543)
259 2ce7_A Cell division protein F 95.3 0.0094 3.2E-07 61.0 3.6 30 69-98 49-78 (476)
260 3d31_A Sulfate/molybdate ABC t 95.2 0.0066 2.3E-07 59.6 2.3 25 67-91 24-48 (348)
261 1tue_A Replication protein E1; 95.2 0.01 3.5E-07 54.2 3.3 29 70-98 59-87 (212)
262 2qby_A CDC6 homolog 1, cell di 95.2 0.0089 3E-07 57.6 3.2 27 67-93 43-69 (386)
263 3nh6_A ATP-binding cassette SU 95.2 0.0057 2E-07 59.0 1.8 26 67-92 78-103 (306)
264 3gd7_A Fusion complex of cysti 95.2 0.0098 3.3E-07 59.3 3.4 25 67-91 45-69 (390)
265 3co5_A Putative two-component 95.2 0.0051 1.7E-07 52.0 1.1 29 66-94 24-52 (143)
266 1zu4_A FTSY; GTPase, signal re 95.1 0.013 4.6E-07 56.7 4.1 27 68-94 104-130 (320)
267 1g8p_A Magnesium-chelatase 38 95.1 0.014 4.7E-07 55.9 4.2 28 68-95 44-71 (350)
268 2bjv_A PSP operon transcriptio 95.1 0.014 4.6E-07 54.1 4.0 29 66-94 26-54 (265)
269 1p9r_A General secretion pathw 95.1 0.014 4.9E-07 58.6 4.4 29 66-94 164-192 (418)
270 2qm8_A GTPase/ATPase; G protei 95.1 0.014 4.8E-07 56.8 4.2 27 67-93 53-79 (337)
271 1nlf_A Regulatory protein REPA 95.1 0.012 4.2E-07 55.1 3.7 27 67-93 28-54 (279)
272 1w5s_A Origin recognition comp 95.1 0.015 5.1E-07 56.9 4.4 28 67-94 48-77 (412)
273 2zan_A Vacuolar protein sortin 95.1 0.012 4E-07 59.4 3.7 31 68-98 166-197 (444)
274 2lkc_A Translation initiation 95.1 0.015 5E-07 49.6 3.8 27 65-91 4-30 (178)
275 1oxx_K GLCV, glucose, ABC tran 95.1 0.0066 2.2E-07 59.7 1.6 25 67-91 29-53 (353)
276 1sxj_C Activator 1 40 kDa subu 95.1 0.014 4.9E-07 56.2 4.0 23 72-94 49-71 (340)
277 2r2a_A Uncharacterized protein 95.0 0.014 4.9E-07 52.6 3.7 24 69-92 5-28 (199)
278 1a5t_A Delta prime, HOLB; zinc 95.0 0.032 1.1E-06 53.9 6.4 47 51-97 4-52 (334)
279 3p32_A Probable GTPase RV1496/ 95.0 0.026 9E-07 55.1 5.8 28 67-94 77-104 (355)
280 1jr3_A DNA polymerase III subu 95.0 0.035 1.2E-06 53.5 6.6 28 69-96 38-65 (373)
281 1iqp_A RFCS; clamp loader, ext 94.9 0.043 1.5E-06 51.6 7.0 26 70-95 47-72 (327)
282 2r44_A Uncharacterized protein 94.9 0.0092 3.2E-07 57.2 2.3 30 69-98 46-75 (331)
283 3pvs_A Replication-associated 94.9 0.013 4.5E-07 59.3 3.5 30 69-98 50-79 (447)
284 3kl4_A SRP54, signal recogniti 94.9 0.015 5E-07 58.8 3.8 28 68-95 96-123 (433)
285 2hf9_A Probable hydrogenase ni 94.9 0.017 5.9E-07 51.6 3.9 26 68-93 37-62 (226)
286 1nij_A Hypothetical protein YJ 94.9 0.013 4.3E-07 56.5 3.1 25 68-92 3-27 (318)
287 1zj6_A ADP-ribosylation factor 94.9 0.028 9.6E-07 48.6 5.0 32 60-91 7-38 (187)
288 3sop_A Neuronal-specific septi 94.9 0.015 5.1E-07 54.9 3.4 24 70-93 3-26 (270)
289 2www_A Methylmalonic aciduria 94.8 0.016 5.5E-07 56.6 3.8 26 68-93 73-98 (349)
290 3pxg_A Negative regulator of g 94.8 0.038 1.3E-06 56.1 6.7 44 57-100 188-232 (468)
291 2wji_A Ferrous iron transport 94.8 0.017 5.8E-07 49.2 3.5 23 69-91 3-25 (165)
292 1xx6_A Thymidine kinase; NESG, 94.8 0.021 7.1E-07 51.2 4.2 28 67-94 6-33 (191)
293 3cf2_A TER ATPase, transitiona 94.8 0.012 4E-07 64.0 2.8 31 68-98 237-267 (806)
294 2ged_A SR-beta, signal recogni 94.8 0.019 6.4E-07 49.8 3.7 26 67-92 46-71 (193)
295 2dyk_A GTP-binding protein; GT 94.8 0.02 6.8E-07 47.8 3.7 23 70-92 2-24 (161)
296 1oix_A RAS-related protein RAB 94.7 0.016 5.6E-07 50.8 3.2 24 69-92 29-52 (191)
297 2npi_A Protein CLP1; CLP1-PCF1 94.7 0.013 4.6E-07 59.5 3.0 27 67-93 136-162 (460)
298 3u61_B DNA polymerase accessor 94.7 0.016 5.4E-07 55.3 3.3 31 68-98 47-77 (324)
299 2qen_A Walker-type ATPase; unk 94.7 0.029 9.9E-07 53.2 5.1 26 69-94 31-56 (350)
300 2f9l_A RAB11B, member RAS onco 94.7 0.017 5.7E-07 50.9 3.2 23 69-91 5-27 (199)
301 2fna_A Conserved hypothetical 94.7 0.03 1E-06 53.2 5.1 36 57-95 21-56 (357)
302 3kta_A Chromosome segregation 94.7 0.02 6.7E-07 49.7 3.6 25 70-94 27-51 (182)
303 2qgz_A Helicase loader, putati 94.7 0.032 1.1E-06 53.5 5.3 26 69-94 152-177 (308)
304 1tq4_A IIGP1, interferon-induc 94.6 0.026 8.7E-07 56.7 4.7 24 68-91 68-91 (413)
305 1moz_A ARL1, ADP-ribosylation 94.6 0.021 7.1E-07 48.9 3.5 33 58-90 5-39 (183)
306 3dm5_A SRP54, signal recogniti 94.6 0.021 7.3E-07 57.8 4.1 29 68-96 99-127 (443)
307 2wjg_A FEOB, ferrous iron tran 94.6 0.021 7.3E-07 49.2 3.6 23 69-91 7-29 (188)
308 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.012 4E-07 57.3 2.0 36 57-93 160-195 (330)
309 1pzn_A RAD51, DNA repair and r 94.6 0.018 6.3E-07 56.2 3.4 36 58-93 120-155 (349)
310 2chq_A Replication factor C sm 94.5 0.036 1.2E-06 52.0 5.3 24 71-94 40-63 (319)
311 3hu3_A Transitional endoplasmi 94.5 0.02 6.9E-07 58.6 3.7 32 67-98 236-267 (489)
312 1ls1_A Signal recognition part 94.5 0.025 8.5E-07 54.0 4.1 27 68-94 97-123 (295)
313 1pui_A ENGB, probable GTP-bind 94.5 0.012 4.2E-07 51.9 1.8 25 67-91 24-48 (210)
314 2dhr_A FTSH; AAA+ protein, hex 94.5 0.018 6E-07 59.3 3.2 29 70-98 65-93 (499)
315 1z2a_A RAS-related protein RAB 94.5 0.024 8.3E-07 47.5 3.6 23 69-91 5-27 (168)
316 1ypw_A Transitional endoplasmi 94.5 0.016 5.5E-07 63.0 3.0 32 67-98 236-267 (806)
317 1sxj_E Activator 1 40 kDa subu 94.5 0.018 6E-07 55.4 3.0 23 72-94 39-61 (354)
318 2gj8_A MNME, tRNA modification 94.4 0.022 7.7E-07 49.0 3.3 24 68-91 3-26 (172)
319 3kkq_A RAS-related protein M-R 94.4 0.027 9.2E-07 48.3 3.7 25 68-92 17-41 (183)
320 2ce2_X GTPase HRAS; signaling 94.3 0.027 9.1E-07 46.8 3.5 23 70-92 4-26 (166)
321 3te6_A Regulatory protein SIR3 94.3 0.018 6.3E-07 55.7 2.8 30 66-95 42-71 (318)
322 3kfv_A Tight junction protein 94.3 0.38 1.3E-05 46.2 12.0 27 68-97 144-170 (308)
323 1u8z_A RAS-related protein RAL 94.3 0.029 1E-06 46.8 3.7 24 69-92 4-27 (168)
324 1kao_A RAP2A; GTP-binding prot 94.3 0.03 1E-06 46.7 3.7 23 69-91 3-25 (167)
325 2a5y_B CED-4; apoptosis; HET: 94.2 0.034 1.1E-06 57.5 4.7 24 68-91 151-174 (549)
326 3tsz_A Tight junction protein 94.2 0.35 1.2E-05 48.0 11.9 25 68-95 231-255 (391)
327 2yv5_A YJEQ protein; hydrolase 94.2 0.026 8.9E-07 54.0 3.6 25 68-93 164-188 (302)
328 2z4s_A Chromosomal replication 94.2 0.041 1.4E-06 55.4 5.2 26 69-94 130-155 (440)
329 2p67_A LAO/AO transport system 94.2 0.031 1.1E-06 54.3 4.0 27 67-93 54-80 (341)
330 1upt_A ARL1, ADP-ribosylation 94.2 0.035 1.2E-06 46.7 3.9 25 67-91 5-29 (171)
331 2zts_A Putative uncharacterize 94.2 0.032 1.1E-06 50.4 3.9 26 67-92 28-53 (251)
332 2v3c_C SRP54, signal recogniti 94.1 0.023 7.9E-07 57.3 3.2 26 69-94 99-124 (432)
333 1nrj_B SR-beta, signal recogni 94.1 0.033 1.1E-06 49.4 3.9 26 67-92 10-35 (218)
334 2zej_A Dardarin, leucine-rich 94.1 0.024 8.1E-07 49.2 2.8 22 70-91 3-24 (184)
335 1j8m_F SRP54, signal recogniti 94.1 0.029 1E-06 53.6 3.7 26 69-94 98-123 (297)
336 2oap_1 GSPE-2, type II secreti 94.1 0.018 6.2E-07 59.3 2.3 27 67-93 258-284 (511)
337 1ky3_A GTP-binding protein YPT 94.1 0.032 1.1E-06 47.3 3.6 25 68-92 7-31 (182)
338 3b5x_A Lipid A export ATP-bind 94.1 0.026 8.9E-07 58.9 3.5 26 67-92 367-392 (582)
339 1yqt_A RNAse L inhibitor; ATP- 94.1 0.027 9.3E-07 58.3 3.6 26 67-92 45-70 (538)
340 3hr8_A Protein RECA; alpha and 94.1 0.031 1.1E-06 55.0 3.8 37 57-93 48-85 (356)
341 2fn4_A P23, RAS-related protei 94.1 0.032 1.1E-06 47.3 3.5 25 68-92 8-32 (181)
342 2vhj_A Ntpase P4, P4; non- hyd 94.0 0.036 1.2E-06 54.0 4.1 28 68-95 122-149 (331)
343 1yrb_A ATP(GTP)binding protein 94.0 0.038 1.3E-06 50.6 4.2 27 68-94 13-39 (262)
344 2rcn_A Probable GTPase ENGC; Y 94.0 0.029 1E-06 55.2 3.5 25 68-92 214-238 (358)
345 3lda_A DNA repair protein RAD5 94.0 0.026 8.8E-07 56.4 3.1 26 67-92 176-201 (400)
346 1z6t_A APAF-1, apoptotic prote 94.0 0.074 2.5E-06 54.9 6.7 36 57-92 132-170 (591)
347 2qag_B Septin-6, protein NEDD5 94.0 0.028 9.5E-07 56.7 3.3 33 58-91 30-64 (427)
348 2erx_A GTP-binding protein DI- 93.9 0.034 1.2E-06 46.6 3.4 23 69-91 3-25 (172)
349 2nzj_A GTP-binding protein REM 93.9 0.035 1.2E-06 46.9 3.5 23 69-91 4-26 (175)
350 3ozx_A RNAse L inhibitor; ATP 93.9 0.027 9.2E-07 58.4 3.2 26 67-92 23-48 (538)
351 3b60_A Lipid A export ATP-bind 93.9 0.024 8.3E-07 59.1 2.9 26 67-92 367-392 (582)
352 1m2o_B GTP-binding protein SAR 93.9 0.032 1.1E-06 48.7 3.3 25 67-91 21-45 (190)
353 1g16_A RAS-related protein SEC 93.9 0.035 1.2E-06 46.6 3.4 23 69-91 3-25 (170)
354 1c1y_A RAS-related protein RAP 93.9 0.04 1.4E-06 46.1 3.7 22 70-91 4-25 (167)
355 2j37_W Signal recognition part 93.9 0.036 1.2E-06 57.1 4.0 28 68-95 100-127 (504)
356 1ek0_A Protein (GTP-binding pr 93.9 0.034 1.2E-06 46.5 3.3 22 70-91 4-25 (170)
357 1u0l_A Probable GTPase ENGC; p 93.8 0.027 9.3E-07 53.7 2.8 25 68-92 168-192 (301)
358 3shw_A Tight junction protein 93.8 0.3 1E-05 49.7 10.6 25 68-95 223-247 (468)
359 1z08_A RAS-related protein RAB 93.8 0.036 1.2E-06 46.6 3.2 24 69-92 6-29 (170)
360 3tqf_A HPR(Ser) kinase; transf 93.8 0.036 1.2E-06 49.3 3.2 30 68-98 15-44 (181)
361 1ypw_A Transitional endoplasmi 93.8 0.021 7.3E-07 62.0 2.1 32 68-99 510-541 (806)
362 3clv_A RAB5 protein, putative; 93.7 0.046 1.6E-06 47.1 3.9 25 68-92 6-30 (208)
363 1svi_A GTP-binding protein YSX 93.7 0.039 1.3E-06 47.7 3.5 24 68-91 22-45 (195)
364 3q85_A GTP-binding protein REM 93.7 0.04 1.4E-06 46.3 3.4 22 70-91 3-24 (169)
365 2hxs_A RAB-26, RAS-related pro 93.7 0.041 1.4E-06 46.7 3.5 24 68-91 5-28 (178)
366 3ozx_A RNAse L inhibitor; ATP 93.7 0.029 9.9E-07 58.2 3.0 26 67-92 292-317 (538)
367 1z0j_A RAB-22, RAS-related pro 93.7 0.038 1.3E-06 46.3 3.2 24 69-92 6-29 (170)
368 3pxi_A Negative regulator of g 93.7 0.083 2.8E-06 56.7 6.7 43 57-99 188-231 (758)
369 2yl4_A ATP-binding cassette SU 93.7 0.025 8.7E-07 59.1 2.6 26 67-92 368-393 (595)
370 2zr9_A Protein RECA, recombina 93.7 0.038 1.3E-06 54.1 3.7 36 57-93 48-85 (349)
371 2xxa_A Signal recognition part 93.7 0.044 1.5E-06 55.3 4.2 29 68-96 99-127 (433)
372 3q72_A GTP-binding protein RAD 93.7 0.038 1.3E-06 46.3 3.2 21 70-90 3-23 (166)
373 1sxj_B Activator 1 37 kDa subu 93.7 0.037 1.3E-06 52.0 3.5 24 71-94 44-67 (323)
374 1wms_A RAB-9, RAB9, RAS-relate 93.6 0.036 1.2E-06 47.0 3.1 23 69-91 7-29 (177)
375 3j16_B RLI1P; ribosome recycli 93.6 0.036 1.2E-06 58.3 3.6 27 67-93 101-127 (608)
376 3con_A GTPase NRAS; structural 93.6 0.039 1.3E-06 47.6 3.3 24 69-92 21-44 (190)
377 3bh0_A DNAB-like replicative h 93.6 0.057 2E-06 51.8 4.7 36 58-94 58-93 (315)
378 1yqt_A RNAse L inhibitor; ATP- 93.6 0.037 1.3E-06 57.3 3.5 26 67-92 310-335 (538)
379 3k53_A Ferrous iron transport 93.5 0.042 1.4E-06 51.2 3.5 23 69-91 3-25 (271)
380 3qf4_B Uncharacterized ABC tra 93.5 0.03 1E-06 58.7 2.7 26 67-92 379-404 (598)
381 1r2q_A RAS-related protein RAB 93.5 0.04 1.4E-06 46.1 3.0 23 69-91 6-28 (170)
382 2a9k_A RAS-related protein RAL 93.5 0.048 1.6E-06 46.5 3.6 25 68-92 17-41 (187)
383 1z0f_A RAB14, member RAS oncog 93.5 0.042 1.4E-06 46.5 3.2 24 69-92 15-38 (179)
384 1f6b_A SAR1; gtpases, N-termin 93.5 0.04 1.4E-06 48.5 3.1 25 67-91 23-47 (198)
385 1zd9_A ADP-ribosylation factor 93.4 0.043 1.5E-06 47.6 3.2 24 68-91 21-44 (188)
386 1ojl_A Transcriptional regulat 93.4 0.071 2.4E-06 50.8 5.0 31 64-94 20-50 (304)
387 1r8s_A ADP-ribosylation factor 93.4 0.049 1.7E-06 45.5 3.4 22 71-92 2-23 (164)
388 3bc1_A RAS-related protein RAB 93.4 0.043 1.5E-06 47.0 3.2 23 69-91 11-33 (195)
389 2b6h_A ADP-ribosylation factor 93.4 0.047 1.6E-06 47.7 3.4 24 67-90 27-50 (192)
390 3pqc_A Probable GTP-binding pr 93.4 0.048 1.6E-06 46.9 3.4 24 69-92 23-46 (195)
391 3bk7_A ABC transporter ATP-bin 93.4 0.041 1.4E-06 57.9 3.5 26 67-92 380-405 (607)
392 2z43_A DNA repair and recombin 93.4 0.045 1.5E-06 52.7 3.5 27 67-93 105-131 (324)
393 1v5w_A DMC1, meiotic recombina 93.4 0.055 1.9E-06 52.6 4.2 26 67-92 120-145 (343)
394 4dsu_A GTPase KRAS, isoform 2B 93.3 0.045 1.5E-06 46.8 3.1 23 69-91 4-26 (189)
395 1fzq_A ADP-ribosylation factor 93.3 0.049 1.7E-06 47.1 3.4 25 67-91 14-38 (181)
396 2ffh_A Protein (FFH); SRP54, s 93.3 0.053 1.8E-06 54.6 4.1 28 68-95 97-124 (425)
397 2g6b_A RAS-related protein RAB 93.3 0.046 1.6E-06 46.5 3.1 26 67-92 8-33 (180)
398 2bov_A RAla, RAS-related prote 93.3 0.056 1.9E-06 47.1 3.7 25 68-92 13-37 (206)
399 1ksh_A ARF-like protein 2; sma 93.3 0.053 1.8E-06 46.6 3.5 25 67-91 16-40 (186)
400 3tw8_B RAS-related protein RAB 93.3 0.043 1.5E-06 46.5 2.9 24 68-91 8-31 (181)
401 2j9r_A Thymidine kinase; TK1, 93.3 0.066 2.2E-06 48.9 4.2 29 67-95 26-54 (214)
402 1m7b_A RND3/RHOE small GTP-bin 93.3 0.05 1.7E-06 46.9 3.4 24 69-92 7-30 (184)
403 2r6a_A DNAB helicase, replicat 93.3 0.068 2.3E-06 53.9 4.8 35 58-93 193-227 (454)
404 3bk7_A ABC transporter ATP-bin 93.2 0.039 1.4E-06 58.0 3.1 26 67-92 115-140 (607)
405 1u94_A RECA protein, recombina 93.2 0.055 1.9E-06 53.1 3.9 35 58-93 51-87 (356)
406 3euj_A Chromosome partition pr 93.2 0.047 1.6E-06 55.9 3.5 25 70-94 30-54 (483)
407 4a82_A Cystic fibrosis transme 93.2 0.026 8.8E-07 58.9 1.6 26 67-92 365-390 (578)
408 2y8e_A RAB-protein 6, GH09086P 93.2 0.048 1.6E-06 46.1 3.0 22 70-91 15-36 (179)
409 2x77_A ADP-ribosylation factor 93.2 0.046 1.6E-06 47.2 3.0 27 64-90 16-43 (189)
410 1z06_A RAS-related protein RAB 93.2 0.057 1.9E-06 46.7 3.6 24 68-91 19-42 (189)
411 1mh1_A RAC1; GTP-binding, GTPa 93.2 0.051 1.8E-06 46.3 3.2 23 69-91 5-27 (186)
412 2obl_A ESCN; ATPase, hydrolase 93.2 0.053 1.8E-06 53.0 3.7 28 67-94 69-96 (347)
413 1u0j_A DNA replication protein 93.1 0.075 2.6E-06 50.2 4.5 26 70-95 105-130 (267)
414 2atv_A RERG, RAS-like estrogen 93.1 0.064 2.2E-06 46.7 3.9 25 68-92 27-51 (196)
415 2dpy_A FLII, flagellum-specifi 93.1 0.055 1.9E-06 54.6 3.8 36 57-94 147-182 (438)
416 3j16_B RLI1P; ribosome recycli 93.1 0.049 1.7E-06 57.3 3.6 24 69-92 378-401 (608)
417 2oil_A CATX-8, RAS-related pro 93.1 0.051 1.7E-06 47.1 3.2 23 69-91 25-47 (193)
418 1r6b_X CLPA protein; AAA+, N-t 93.1 0.086 2.9E-06 56.5 5.5 39 57-95 194-233 (758)
419 2cxx_A Probable GTP-binding pr 93.1 0.046 1.6E-06 46.9 2.8 22 70-91 2-23 (190)
420 1vg8_A RAS-related protein RAB 93.1 0.059 2E-06 47.1 3.6 25 68-92 7-31 (207)
421 3t5g_A GTP-binding protein RHE 93.1 0.047 1.6E-06 46.6 2.9 24 68-91 5-28 (181)
422 2p5s_A RAS and EF-hand domain 93.1 0.063 2.1E-06 47.0 3.7 25 67-91 26-50 (199)
423 3k1j_A LON protease, ATP-depen 93.1 0.04 1.4E-06 57.8 2.8 29 67-95 58-86 (604)
424 2bme_A RAB4A, RAS-related prot 93.0 0.049 1.7E-06 46.6 2.9 24 69-92 10-33 (186)
425 2efe_B Small GTP-binding prote 93.0 0.054 1.9E-06 46.0 3.2 23 69-91 12-34 (181)
426 3ihw_A Centg3; RAS, centaurin, 93.0 0.066 2.2E-06 46.5 3.8 24 68-91 19-42 (184)
427 2qu8_A Putative nucleolar GTP- 93.0 0.06 2E-06 48.4 3.6 25 67-91 27-51 (228)
428 3oes_A GTPase rhebl1; small GT 93.0 0.057 1.9E-06 47.3 3.4 25 68-92 23-47 (201)
429 3nbx_X ATPase RAVA; AAA+ ATPas 93.0 0.034 1.2E-06 57.2 2.1 26 69-94 41-66 (500)
430 2gf0_A GTP-binding protein DI- 93.0 0.067 2.3E-06 46.3 3.8 24 68-91 7-30 (199)
431 3bwd_D RAC-like GTP-binding pr 93.0 0.069 2.3E-06 45.4 3.8 24 68-91 7-30 (182)
432 3lxx_A GTPase IMAP family memb 92.9 0.058 2E-06 49.0 3.4 24 68-91 28-51 (239)
433 3qf4_A ABC transporter, ATP-bi 92.9 0.034 1.2E-06 58.2 2.1 26 67-92 367-392 (587)
434 1tf7_A KAIC; homohexamer, hexa 92.9 0.05 1.7E-06 56.0 3.3 31 58-89 28-59 (525)
435 3t1o_A Gliding protein MGLA; G 92.9 0.051 1.8E-06 46.7 2.9 27 69-95 14-40 (198)
436 2xtp_A GTPase IMAP family memb 92.9 0.061 2.1E-06 49.4 3.5 25 67-91 20-44 (260)
437 3cbq_A GTP-binding protein REM 92.9 0.049 1.7E-06 47.9 2.7 23 68-90 22-44 (195)
438 2fh5_B SR-beta, signal recogni 92.9 0.065 2.2E-06 47.3 3.5 25 68-92 6-30 (214)
439 4bas_A ADP-ribosylation factor 92.8 0.063 2.1E-06 46.5 3.3 24 68-91 16-39 (199)
440 3c5c_A RAS-like protein 12; GD 92.8 0.07 2.4E-06 46.3 3.6 25 68-92 20-44 (187)
441 3tkl_A RAS-related protein RAB 92.8 0.061 2.1E-06 46.5 3.2 23 69-91 16-38 (196)
442 2cjw_A GTP-binding protein GEM 92.8 0.076 2.6E-06 46.5 3.9 25 68-92 5-29 (192)
443 2i1q_A DNA repair and recombin 92.8 0.06 2.1E-06 51.5 3.4 35 58-92 87-121 (322)
444 1f2t_A RAD50 ABC-ATPase; DNA d 92.7 0.078 2.7E-06 45.1 3.7 25 69-93 23-47 (149)
445 4a1f_A DNAB helicase, replicat 92.7 0.071 2.4E-06 52.0 3.9 35 58-93 36-70 (338)
446 2gf9_A RAS-related protein RAB 92.7 0.064 2.2E-06 46.3 3.2 23 69-91 22-44 (189)
447 3iby_A Ferrous iron transport 92.7 0.06 2E-06 50.1 3.1 23 70-92 2-24 (256)
448 3dz8_A RAS-related protein RAB 92.6 0.067 2.3E-06 46.4 3.3 25 68-92 22-46 (191)
449 3cf2_A TER ATPase, transitiona 92.6 0.042 1.4E-06 59.7 2.3 31 69-99 511-541 (806)
450 2h17_A ADP-ribosylation factor 92.6 0.064 2.2E-06 46.1 3.0 24 68-91 20-43 (181)
451 1t9h_A YLOQ, probable GTPase E 92.6 0.025 8.4E-07 54.6 0.4 25 68-92 172-196 (307)
452 2fv8_A H6, RHO-related GTP-bin 92.6 0.065 2.2E-06 47.3 3.1 23 69-91 25-47 (207)
453 2fg5_A RAB-22B, RAS-related pr 92.5 0.062 2.1E-06 46.7 2.9 24 69-92 23-46 (192)
454 3reg_A RHO-like small GTPase; 92.5 0.068 2.3E-06 46.4 3.2 25 68-92 22-46 (194)
455 4gzl_A RAS-related C3 botulinu 92.5 0.076 2.6E-06 46.8 3.5 25 67-91 28-52 (204)
456 1ega_A Protein (GTP-binding pr 92.5 0.058 2E-06 51.4 2.9 24 68-91 7-30 (301)
457 1r6b_X CLPA protein; AAA+, N-t 92.5 0.074 2.5E-06 57.0 4.0 28 71-98 490-517 (758)
458 3cph_A RAS-related protein SEC 92.5 0.084 2.9E-06 46.3 3.7 24 68-91 19-42 (213)
459 2gco_A H9, RHO-related GTP-bin 92.5 0.066 2.2E-06 47.0 3.0 24 69-92 25-48 (201)
460 3b1v_A Ferrous iron uptake tra 92.4 0.076 2.6E-06 50.0 3.5 23 69-91 3-25 (272)
461 2q3h_A RAS homolog gene family 92.4 0.082 2.8E-06 46.0 3.6 25 67-91 18-42 (201)
462 1x3s_A RAS-related protein RAB 92.4 0.075 2.6E-06 45.7 3.3 24 69-92 15-38 (195)
463 1gwn_A RHO-related GTP-binding 92.4 0.076 2.6E-06 47.1 3.4 24 68-91 27-50 (205)
464 2iwr_A Centaurin gamma 1; ANK 92.4 0.065 2.2E-06 45.6 2.8 24 69-92 7-30 (178)
465 2a5j_A RAS-related protein RAB 92.4 0.077 2.6E-06 46.0 3.3 23 69-91 21-43 (191)
466 1zbd_A Rabphilin-3A; G protein 92.3 0.07 2.4E-06 46.6 3.0 23 69-91 8-30 (203)
467 1qvr_A CLPB protein; coiled co 92.3 0.085 2.9E-06 57.5 4.2 38 57-94 178-216 (854)
468 3e1s_A Exodeoxyribonuclease V, 92.3 0.084 2.9E-06 55.1 4.0 28 68-95 203-230 (574)
469 2q6t_A DNAB replication FORK h 92.3 0.1 3.5E-06 52.5 4.4 35 58-93 190-224 (444)
470 2h57_A ADP-ribosylation factor 92.3 0.064 2.2E-06 46.4 2.6 25 68-92 20-44 (190)
471 2iw3_A Elongation factor 3A; a 92.2 0.073 2.5E-06 58.9 3.5 25 67-91 459-483 (986)
472 2bcg_Y Protein YP2, GTP-bindin 92.2 0.074 2.5E-06 46.6 2.9 23 69-91 8-30 (206)
473 2qnr_A Septin-2, protein NEDD5 92.1 0.072 2.5E-06 50.8 3.0 23 69-91 18-40 (301)
474 1wb9_A DNA mismatch repair pro 92.0 0.079 2.7E-06 57.5 3.6 26 67-92 605-630 (800)
475 2ew1_A RAS-related protein RAB 92.0 0.078 2.7E-06 47.0 2.9 24 69-92 26-49 (201)
476 3a1s_A Iron(II) transport prot 92.0 0.076 2.6E-06 49.4 3.0 23 69-91 5-27 (258)
477 1tf7_A KAIC; homohexamer, hexa 92.0 0.087 3E-06 54.1 3.7 27 67-93 279-305 (525)
478 3bgw_A DNAB-like replicative h 91.9 0.096 3.3E-06 52.9 3.8 35 58-93 187-221 (444)
479 2il1_A RAB12; G-protein, GDP, 91.9 0.081 2.8E-06 46.0 2.9 23 69-91 26-48 (192)
480 2o52_A RAS-related protein RAB 91.9 0.079 2.7E-06 46.5 2.8 23 69-91 25-47 (200)
481 2fu5_C RAS-related protein RAB 91.8 0.053 1.8E-06 46.4 1.5 23 69-91 8-30 (183)
482 2j1l_A RHO-related GTP-binding 91.8 0.096 3.3E-06 46.5 3.3 24 68-91 33-56 (214)
483 1zcb_A G alpha I/13; GTP-bindi 91.8 0.11 3.6E-06 51.2 3.8 26 67-92 31-56 (362)
484 2qtf_A Protein HFLX, GTP-bindi 91.7 0.096 3.3E-06 51.5 3.4 23 69-91 179-201 (364)
485 2atx_A Small GTP binding prote 91.6 0.095 3.2E-06 45.4 3.0 24 69-92 18-41 (194)
486 1xp8_A RECA protein, recombina 91.6 0.11 3.7E-06 51.2 3.7 35 58-93 62-98 (366)
487 1ni3_A YCHF GTPase, YCHF GTP-b 91.5 0.11 3.6E-06 51.8 3.5 25 67-91 18-42 (392)
488 3szr_A Interferon-induced GTP- 91.5 0.068 2.3E-06 56.2 2.2 22 70-91 46-67 (608)
489 2f7s_A C25KG, RAS-related prot 91.5 0.098 3.3E-06 46.2 3.0 23 69-91 25-47 (217)
490 2hup_A RAS-related protein RAB 91.5 0.097 3.3E-06 46.0 2.9 23 69-91 29-51 (201)
491 3lxw_A GTPase IMAP family memb 91.4 0.11 3.9E-06 47.7 3.4 24 68-91 20-43 (247)
492 2aka_B Dynamin-1; fusion prote 91.3 0.17 5.9E-06 47.1 4.7 23 69-91 26-48 (299)
493 3llu_A RAS-related GTP-binding 91.3 0.11 3.7E-06 45.4 3.1 26 67-92 18-43 (196)
494 3sfz_A APAF-1, apoptotic pepti 91.3 0.23 7.9E-06 55.2 6.4 37 56-92 131-170 (1249)
495 3end_A Light-independent proto 91.2 0.15 5E-06 48.2 4.1 29 67-95 39-67 (307)
496 2j0v_A RAC-like GTP-binding pr 91.2 0.13 4.3E-06 45.3 3.5 23 69-91 9-31 (212)
497 3i8s_A Ferrous iron transport 91.2 0.13 4.3E-06 48.2 3.5 24 69-92 3-26 (274)
498 2vf7_A UVRA2, excinuclease ABC 91.2 0.09 3.1E-06 57.4 2.8 19 68-86 35-53 (842)
499 2qag_C Septin-7; cell cycle, c 91.2 0.1 3.5E-06 52.4 3.0 22 70-91 32-53 (418)
500 1ewq_A DNA mismatch repair pro 91.1 0.11 3.8E-06 56.1 3.4 24 69-92 576-599 (765)
No 1
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.90 E-value=3.1e-23 Score=191.20 Aligned_cols=199 Identities=17% Similarity=0.137 Sum_probs=132.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQI 148 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql 148 (395)
+++|+|+|++||||||+++.|++.|.. ..+...+..+ .|..+ .+. ...++.++.........+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~~~eP---~~t~~---g~~----------ir~~l~~~~~~~~~~~~l 64 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREP---GGVPT---GEE----------IRKIVLEGNDMDIRTEAM 64 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEESS---TTCHH---HHH----------HHHHHHSSCCCCHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEEeeCC---CCChH---HHH----------HHHHHhcccCCCHHHHHH
Confidence 689999999999999999999999852 2211111000 11110 010 123333443333445556
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHH
Q psy6807 149 RMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSK 228 (395)
Q Consensus 149 ~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~ 228 (395)
.|+++|..++.+.+...+..|..||.||+++|+++|+.+. +....+....+.... ...+.||++||||+||++
T Consensus 65 Lf~a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~------~~~~~~~~~~l~~~~-~~~~~PDl~i~Ld~~~e~ 137 (205)
T 4hlc_A 65 LFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYA------RGIGVEEVRALNEFA-INGLYPDLTIYLNVSAEV 137 (205)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTT------TSSCHHHHHHHHHHH-HTTCCCSEEEEEECCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEecCcccchHHHHhcc------ccchHHHHHHHHHHH-hcCCCCCEEeeeCCCHHH
Confidence 6888999888888888899999999999999999996432 222233333433332 234589999999999999
Q ss_pred HHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhhc
Q psy6807 229 VKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFD 297 (395)
Q Consensus 229 ~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f~ 297 (395)
+++|+.+|++..+.- ..-+.+|++++.+.|.+.... .+..++++| +.+++|+|.++|....-.
T Consensus 138 ~~~Ri~~r~~~~dr~-e~~~~~f~~~v~~~Y~~l~~~---~~~~~~~ID--a~~~~e~V~~~i~~~i~~ 200 (205)
T 4hlc_A 138 GRERIIKNSRDQNRL-DQEDLKFHEKVIEGYQEIIHN---ESQRFKSVN--ADQPLENVVEDTYQTIIK 200 (205)
T ss_dssp HHHHHHC-------C-CHHHHHHHHHHHHHHHHHHHS---CCTTEEEEE--TTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccch-hccCHHHHHHHHHHHHHHHHh---CCCCEEEEE--CCCCHHHHHHHHHHHHHH
Confidence 999999998643210 002578999999999886542 235699999 678999999999775443
No 2
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.89 E-value=1.5e-22 Score=187.66 Aligned_cols=196 Identities=16% Similarity=0.231 Sum_probs=140.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCC--CcccHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPK--HFHTIA 145 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~--~~~~~~ 145 (395)
++++|+|+|++||||||+++.|++.|+...++...+..+ .+.. +... ...++.++. ......
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p---~~~~---~g~~----------i~~~l~~~~~~~~~~~~ 68 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREP---GGTP---LAER----------IRELLLAPSDEPMAADT 68 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESS---CSSH---HHHH----------HHHHHHSCCSSCCCHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCC---CCCH---HHHH----------HHHHHhcCCCCCCCHHH
Confidence 578999999999999999999999998665532221110 1111 1011 233344432 234566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECC
Q psy6807 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIP 225 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p 225 (395)
.++.|+++|+.++.+.+...+..|..||+||+++|+++|+.+.. | +. .+.+..+... ....+.||++|||++|
T Consensus 69 ~~llf~a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~--g-~~---~~~~~~l~~~-~~~~~~PDlvi~Ld~~ 141 (213)
T 4edh_A 69 ELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGR--G-LP---EARIAALESF-VQGDLRPDLTLVFDLP 141 (213)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTT--C-CC---HHHHHHHHHH-HHTTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhcc--C-CC---HHHHHHHHHH-HhcCCCCCEEEEEeCC
Confidence 77888899999888888888999999999999999999975421 2 22 2333333332 2346789999999999
Q ss_pred hHHHHHHHhhcCC--ccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 226 VSKVKENVKKRNN--PWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 226 ~e~~~eRI~~Rgr--~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
++++++|+.+|+. ..|. -+.+|++++.+.|.+.... ....++++| +.+++|+|.++|....
T Consensus 142 ~e~~~~Ri~~R~~~dr~E~----~~~~~~~rv~~~y~~l~~~---~~~~~~vID--a~~s~eeV~~~I~~~l 204 (213)
T 4edh_A 142 VEIGLARAAARGRLDRFEQ----EDRRFFEAVRQTYLQRAAQ---APERYQVLD--AGLPLAEVQAGLDRLL 204 (213)
T ss_dssp HHHHHHHHCCCSSCCTTTT----SCHHHHHHHHHHHHHHHHH---CTTTEEEEE--TTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcCcccc----cHHHHHHHHHHHHHHHHHH---CCCcEEEEe--CCCCHHHHHHHHHHHH
Confidence 9999999999963 4444 2579999999999886532 134699999 6789999999997744
No 3
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.89 E-value=7.6e-22 Score=178.22 Aligned_cols=191 Identities=18% Similarity=0.214 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIR 149 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~ 149 (395)
++|+|+|++||||||+++.|+++++..++.++..+.. ....|+.++. ..++..|+.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~-----------------------~~~~~~~~~~-~~~~~~~~~ 56 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENP-----------------------YFEQYYKDLK-KTVFKMQIY 56 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCT-----------------------THHHHTTCHH-HHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccH-----------------------HHHHHHhCcc-ccchhHHHH
Confidence 4799999999999999999999999877655422110 0234444433 234556666
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCC-------CCCCEEEEE
Q psy6807 150 MLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPL-------FKPHLVIYL 222 (395)
Q Consensus 150 ~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l-------~~PdlvIyL 222 (395)
++..|+.+... .+..| .||+||+++|+.+|+.++++.|.+.+.++..|.+++......+ ..|+++|||
T Consensus 57 ~~~~r~~~~~~----~~~~~-~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L 131 (205)
T 2jaq_A 57 MLTARSKQLKQ----AKNLE-NIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYL 131 (205)
T ss_dssp HHHHHHHHHC-----------CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEE
T ss_pred HHHHHHHHHHH----hhccC-CEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEE
Confidence 77777665332 23445 4999999999999999877889999999999999888766555 679999999
Q ss_pred ECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 223 DIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 223 d~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
++|++++.+|+.+|+++.+.. .+.++++.+...|.+++.. .......+++| +.+++++|+++|..+-
T Consensus 132 ~~~~e~~~~Rl~~R~r~~~~~---~~~~~~~~l~~~~~~~~~~-~~~~~~~~~Id--~~~~~~~v~~~I~~~l 198 (205)
T 2jaq_A 132 RVSTKTAISRIKKRGRSEELL---IGEEYWETLNKNYEEFYKQ-NVYDFPFFVVD--AELDVKTQIELIMNKL 198 (205)
T ss_dssp ECCHHHHHHHHHHHTCHHHHH---SCHHHHHHHHHHHHHHHHH-HTTTSCEEEEE--TTSCHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHcCChhhhc---CcHHHHHHHHHHHHHHHHH-ccccCcEEEEE--CCCCHHHHHHHHHHHH
Confidence 999999999999999887753 2357888888888875432 12134567889 4559999999997643
No 4
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.88 E-value=7.7e-23 Score=190.93 Aligned_cols=192 Identities=14% Similarity=0.150 Sum_probs=124.7
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhcc-ccCCCCc-cccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCccc
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELDM-IALPPAN-MDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHT 143 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~~-~~~~e~~-~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~ 143 (395)
..++++|+|+|++||||||+++.|++.|+. ..++... ...+ .|..+ .+. ...++.++.. .+
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP---~~t~~---g~~----------ir~~l~~~~~-~~ 80 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREP---GGTLL---NES----------VRNLLFKAQG-LD 80 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESS---CSSHH---HHH----------HHHHHHTCSS-CC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCC---CCChH---HHH----------HHHHHhCCCC-CC
Confidence 356899999999999999999999999877 4432111 1110 11111 010 1233333322 45
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEE
Q psy6807 144 IAFQI-RMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYL 222 (395)
Q Consensus 144 ~~~ql-~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyL 222 (395)
...+. .|+++|+.++.+.+...+..|..||+||+++|+++|+.+. .+...+.+.++...... ++||++|||
T Consensus 81 ~~~e~llf~a~R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~------~g~~~~~~~~l~~~~~~--~~PDl~I~L 152 (223)
T 3ld9_A 81 SLSELLFFIAMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYG------QGIDCSLIDQLNDLVID--VYPDITFII 152 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTT------TCCCHHHHHHHHHHHCS--SCCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEccchhhHHHhcccc------CCccHHHHHHHHHHhhc--CCCCeEEEE
Confidence 55554 6888999988777888899999999999999999997532 23345666666555544 799999999
Q ss_pred ECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 223 DIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 223 d~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++|++++++|+ +|++ +|. .+.+|++++.+.|.++.... ...++++| +.+++|+| ++|..+
T Consensus 153 dv~~e~~~~Ri-~rdr-~E~----~~~e~~~rv~~~y~~la~~~---~~~~~vID--a~~sieeV-~~I~~~ 212 (223)
T 3ld9_A 153 DVDINESLSRS-CKNG-YEF----ADMEFYYRVRDGFYDIAKKN---PHRCHVIT--DKSETYDI-DDINFV 212 (223)
T ss_dssp ECC----------------------CHHHHHHHHHHHHHHHHHC---TTTEEEEE--SSCSSSCC-CHHHHH
T ss_pred eCCHHHHHHHh-ccCc-ccc----chHHHHHHHHHHHHHHHHHC---CCCEEEEc--CCCCHHHH-HHHHHH
Confidence 99999999999 6665 554 25899999999999876432 35799999 67888888 887664
No 5
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.88 E-value=2e-21 Score=180.16 Aligned_cols=195 Identities=18% Similarity=0.233 Sum_probs=135.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCC-----CCc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDP-----KHF 141 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp-----~~~ 141 (395)
++++|+|+|++||||||+++.|++.|....++..... .+ .|..+ ... . ..+..++ ...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~---rep~~t~~---g~~-----i-----r~~l~~~~~~~~~~~ 65 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT---REPGGTQL---AEK-----L-----RSLLLDIKSVGDEVI 65 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE---ESSCSSHH---HHH-----H-----HHHHHSTTTTTTCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee---eCCCCCHH---HHH-----H-----HHHHhcccccccccC
Confidence 4789999999999999999999999976655211111 11 11111 111 1 1112211 112
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEE
Q psy6807 142 HTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIY 221 (395)
Q Consensus 142 ~~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIy 221 (395)
......+.|++.|..++.+.+...|+.|..||.||+++|+++|+.+-. | +.. +...++... ....+.||++||
T Consensus 66 ~~~~e~lL~~A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~--g-~~~---~~~~~l~~~-~~~~~~PDl~i~ 138 (213)
T 4tmk_A 66 TDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGR--G-IDQ---HMLATLRDA-VLGDFRPDLTLY 138 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTT--C-CCH---HHHHHHHHH-HHTTCCCSEEEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHccccc--C-CCH---HHHHHHHHH-hccCCCCCEEEE
Confidence 334556678889998887788899999999999999999999975321 2 222 222222221 234578999999
Q ss_pred EECChHHHHHHHhhcCC--ccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 222 LDIPVSKVKENVKKRNN--PWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 222 Ld~p~e~~~eRI~~Rgr--~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
|++|++++++|+.+|++ ..|. -+.+|++++.+.|.++... ...++++| +.+++|+|.++|....
T Consensus 139 Ldv~~e~~~~Ri~~R~~~dr~E~----~~~~f~~rv~~~y~~la~~----~~~~~vID--a~~s~eeV~~~I~~~l 204 (213)
T 4tmk_A 139 LDVTPEVGLKRARARGELDRIEQ----ESFDFFNRTRARYLELAAQ----DKSIHTID--ATQPLEAVMDAIRTTV 204 (213)
T ss_dssp EECCHHHHHHHHHHHSSCCTTTT----SCHHHHHHHHHHHHHHHHT----CTTEEEEE--TTSCHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHhcCCccchhh----hHHHHHHHHHHHHHHHHHH----CCcEEEEC--CCCCHHHHHHHHHHHH
Confidence 99999999999999974 3443 2589999999999886532 25789999 7889999999997743
No 6
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.87 E-value=4.7e-22 Score=184.77 Aligned_cols=195 Identities=19% Similarity=0.231 Sum_probs=139.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcccc--CCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCC-Cccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIA--LPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPK-HFHT 143 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~--~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~-~~~~ 143 (395)
.++++|+|+|++||||||+++.|++.|+... +.++. .|..+ ... ...++.++. ....
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~-------~~t~~---g~~----------ir~~l~~~~~~~~~ 62 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPE-------RSTRI---GGL----------INEYLTDDSFQLSD 62 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSC-------TTSHH---HHH----------HHHHHHCTTSCCCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecC-------CCChH---HHH----------HHHHHHhcccCCCH
Confidence 3588999999999999999999999998621 11221 01110 000 123333332 2345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEE-
Q psy6807 144 IAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYL- 222 (395)
Q Consensus 144 ~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyL- 222 (395)
...++.|+++|+. ..+.+...|+.|+.||+||+++|+++|+.+. | +....++ +........+.||++|||
T Consensus 63 ~~~~llf~a~R~~-~~~~I~paL~~g~~VI~DRy~~S~~ayq~~~---~-l~~~~~~----~l~~~~~~~~~PDlti~L~ 133 (216)
T 3tmk_A 63 QAIHLLFSANRWE-IVDKIKKDLLEGKNIVMDRYVYSGVAYSAAK---G-TNGMDLD----WCLQPDVGLLKPDLTLFLS 133 (216)
T ss_dssp HHHHHHHHHHHHT-THHHHHHHHHTTCEEEEESCHHHHHHHHHTT---C-CTTCCHH----HHHGGGTTSBCCSEEEEEE
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHcCCEEEEeccHhHHHHHHHhc---C-CCHHHHH----HHHHHhhCCCCCCEEEEEe
Confidence 6788889999987 5567788889999999999999999998641 2 3333333 333334567899999999
Q ss_pred ECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhccccc-CCCCcEEEEeCCCCCChhHHHHHHHHhhhc
Q psy6807 223 DIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQI-SDSSELLVYDWSDGGDPEVVVEDIERIDFD 297 (395)
Q Consensus 223 d~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~-~~~~~vli~D~t~~~~~e~V~edIe~l~f~ 297 (395)
|+|++++++|+..|++.+|. .+|++++.+.|.+++.... ..+..++++| ++.+++|+|.++|..+.-.
T Consensus 134 dv~pe~~~~R~~~~~dr~E~------~~f~~rvr~~Y~~la~~~~~~~~~~~~vID-~a~~s~eeV~~~I~~~i~~ 202 (216)
T 3tmk_A 134 TQDVDNNAEKSGFGDERYET------VKFQEKVKQTFMKLLDKEIRKGDESITIVD-VTNKGIQEVEALIWQIVEP 202 (216)
T ss_dssp CSCCSCGGGCCSSSCCTTCC------HHHHHHHHHHHHHHHHHHHHTTCCSEEEEE-CTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhccCcccccH------HHHHHHHHHHHHHHHHhccccCCCCEEEEe-CCCCCHHHHHHHHHHHHHH
Confidence 99999999999877766774 6999999999999764300 1346799999 3468999999999775443
No 7
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.87 E-value=2.4e-22 Score=188.07 Aligned_cols=195 Identities=15% Similarity=0.205 Sum_probs=132.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccc----cCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMI----ALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFH 142 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~----~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~ 142 (395)
.++++|+|+|++||||||+++.|++.|+.. .++...+..+ .|.. +... ...++.++. ..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep---~~t~---~g~~----------ir~~l~~~~-~~ 85 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP---GGTR---LGET----------LREILLNQP-MD 85 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS---SSSH---HHHH----------HHHHHHHSC-CC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC---CCCh---HHHH----------HHHHHHcCC-CC
Confidence 358899999999999999999999999765 3321111110 1111 0010 122233221 23
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEE
Q psy6807 143 TIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYL 222 (395)
Q Consensus 143 ~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyL 222 (395)
.....+.|+++|+.++.+.+...++.|..||+||+++|+++|+.+.. | +.. +.+.++... ....+.||++|||
T Consensus 86 ~~~~~llf~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~--g-l~~---~~~~~l~~~-~~~~~~PDl~I~L 158 (227)
T 3v9p_A 86 LETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGR--G-LPR---DKLEALERW-VQGGFQPDLTVLF 158 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTT--C-CCH---HHHHHHHHH-HHTTCCCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhcc--C-CCH---HHHHHHHHH-HhcCCCCCEEEEE
Confidence 45667888899999888778888999999999999999999985421 2 222 233333222 2346789999999
Q ss_pred ECChHHHHHHHhhcC--CccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 223 DIPVSKVKENVKKRN--NPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 223 d~p~e~~~eRI~~Rg--r~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++|++++++|+.+|+ +..|. -+.+|++++.+.|+++... ....+++|| +.+++|+|.++|...
T Consensus 159 dv~~e~~~~Ri~~R~~~dr~E~----~~~ef~~rv~~~Y~~la~~---~~~~~~vID--a~~s~eeV~~~I~~~ 223 (227)
T 3v9p_A 159 DVPPQIASARRGAVRMPDKFES----ESDAFFARTRAEYLRRAQE---APHRFVIVD--SSEPIAQIRKQLEGV 223 (227)
T ss_dssp ECCSSCGGGTTTCCCCC---CC----HHHHHHHHHHHHHHHHHHH---CTTTEEEEE--TTSCHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHhccCccchhh----hhHHHHHHHHHHHHHHHHH---hcCCEEEEe--CCCCHHHHHHHHHHH
Confidence 999999999999997 34443 1479999999999886542 235799999 678999999999763
No 8
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.87 E-value=1.8e-21 Score=183.22 Aligned_cols=196 Identities=17% Similarity=0.206 Sum_probs=131.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCc-cccccccCCCccccchhhhhhhhhhhhhhhhhc-CCCC-CcccH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPAN-MDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFC-KDPK-HFHTI 144 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~-~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~-~dp~-~~~~~ 144 (395)
++++|+|+|++||||||+++.|++.|+...++... +..+ .|..+ ...+ ..+. .++. .....
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep---~~t~~---g~~i----------r~~l~~~~~~~~~~~ 89 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP---GGTLL---AEKL----------RALVKEEHPGEELQD 89 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS---CSSHH---HHHH----------HHHHHSCCTTSCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC---CCCHH---HHHH----------HHHHhhCCCcccCCH
Confidence 47899999999999999999999999876654111 1110 11111 1111 1112 2221 11233
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEE
Q psy6807 145 AFQ-IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLD 223 (395)
Q Consensus 145 ~~q-l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd 223 (395)
..+ +.|+++|+.++.+.+...|..|..||+||+++|+++|+.+.. | +. .+.+..+.... ...+.||++|||+
T Consensus 90 ~~e~lLf~A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~r--g-l~---~~~i~~l~~~~-~~~~~PDlvi~Ld 162 (236)
T 3lv8_A 90 ITELLLVYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGR--Q-IA---PSTMQSLKQTA-LGDFKPDLTLYLD 162 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTT--C-CC---HHHHHHHHHHH-HTTCCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhcc--C-CC---HHHHHHHHHHH-hcCCCCCEEEEEe
Confidence 334 468889998888788888999999999999999999975421 2 22 23333333322 3467899999999
Q ss_pred CChHHHHHHHhhcCC--ccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhh
Q psy6807 224 IPVSKVKENVKKRNN--PWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDF 296 (395)
Q Consensus 224 ~p~e~~~eRI~~Rgr--~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f 296 (395)
+|++++++|+.+|+. ..|. -..+|++++.+.|.++... ...+++|| +.+++|+|.++|..+--
T Consensus 163 v~~e~~~~Ri~~R~~~dr~E~----~~~~~~~rv~~~y~~la~~----~~~~~vID--a~~sieeV~~~I~~~l~ 227 (236)
T 3lv8_A 163 IDPKLGLERARGRGELDRIEK----MDISFFERARERYLELANS----DDSVVMID--AAQSIEQVTADIRRALQ 227 (236)
T ss_dssp CCHHHHHHC-----CCCTTTT----SCHHHHHHHHHHHHHHHHH----CTTEEEEE--TTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCcchhhh----hHHHHHHHHHHHHHHHHHH----CCCEEEEe--CCCCHHHHHHHHHHHHH
Confidence 999999999999974 4443 2479999999999886542 12389999 77999999999987543
No 9
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.86 E-value=1.4e-21 Score=182.95 Aligned_cols=215 Identities=19% Similarity=0.219 Sum_probs=146.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-ccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADEL-DMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIA 145 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l-~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~ 145 (395)
++++|+|+|++||||||+++.|++.+ +...+.|+........ .|.... . +...+...++.|+.+|. .+++.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~~~Ep~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~-~~~~~ 73 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKA-C-----TAQSLGNLLDMMYREPA-RWSYT 73 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSEEECCCGGGTSCCC------------------CCCHHHHHHHSHH-HHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCeeeecchhhhccccccccccc-c-----ccccCCchHHHHHhCcc-cchhH
Confidence 36899999999999999999999999 5655666532110000 000000 0 00011112456666654 34678
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhcCC-eEEEeccCcch-HHHHHHHHhcCCCChhHHHHHHHHHHHhCCCC---CCCCEE
Q psy6807 146 FQIRMLQLRFSVYVDA-LAHMLSTGQ-GAIVQRCPFSD-FIFIEAMDKCGYITKRHKDIYYEITRFTLPPL---FKPHLV 219 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~a-l~~~l~tG~-~VIlDRs~~Sd-~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l---~~Pdlv 219 (395)
.|..++..|+.++..+ ..|+...+. .++.+|++.+| |+|....++.+.+++.++..|.++...+...+ +.||++
T Consensus 74 ~~~~~ll~r~~~~~~~~~~~~~~~~~~~l~~~r~vi~Dr~~~s~~~y~~~~~~~~e~~~~~~~~~~l~~~~~~~~~pd~~ 153 (241)
T 2ocp_A 74 FQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGF 153 (241)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHSCSSCEEEEESCHHHHHHTHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSHHHHCCCEE
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCceEeeeCCchhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcccccCCCEE
Confidence 8888888888774332 234434445 45889999998 78998888888888877777877776544333 379999
Q ss_pred EEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhccccc-------CCCCcEEEEeCCCCCChhHHHHHHH
Q psy6807 220 IYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQI-------SDSSELLVYDWSDGGDPEVVVEDIE 292 (395)
Q Consensus 220 IyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~-------~~~~~vli~D~t~~~~~e~V~edIe 292 (395)
|||++|++++++|+.+|+++.|.. .+.+|++.+.+.|++++.+.. ...+.++++| +.+++++|.++|+
T Consensus 154 i~l~~~~~~~~~R~~~R~r~~e~~---~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id--~~~~~~~v~~~i~ 228 (241)
T 2ocp_A 154 IYLQASPQVCLKRLYQRAREEEKG---IELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLD--VNDDFSEEVTKQE 228 (241)
T ss_dssp EEEECCHHHHHHHHHHSCCTTTTT---CCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEE--CCSCTTTCHHHHH
T ss_pred EEEECCHHHHHHHHHhcCCccccc---CCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEE--CCCChhhCHHHHH
Confidence 999999999999999999877753 468999999999998765311 1346799999 4456777666665
Q ss_pred Hh
Q psy6807 293 RI 294 (395)
Q Consensus 293 ~l 294 (395)
.+
T Consensus 229 ~i 230 (241)
T 2ocp_A 229 DL 230 (241)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 10
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.84 E-value=2.5e-20 Score=170.55 Aligned_cols=191 Identities=19% Similarity=0.205 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIR 149 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~ 149 (395)
++|+|+|++||||||+++.|++.|....++...+..+ .|.... . ..+..... .. .......+.
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP---~~t~~~---~-----~ir~~l~~-----~~-~~~~~~~ll 63 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP---GGTETG---E-----KIRKILLE-----EE-VTPKAELFL 63 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS---CSSHHH---H-----HHHHHHHH-----SC-CCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC---CCCcHH---H-----HHHHHhhc-----cc-CChHHHHHH
Confidence 5899999999999999999999997655432222111 111110 0 01111111 11 112233334
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHH
Q psy6807 150 MLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKV 229 (395)
Q Consensus 150 ~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~ 229 (395)
+.+.| .+..+.+...+..|..||.||+++|.++|+.+- .| + ..+....+.... ...+.||++||||+|++++
T Consensus 64 ~~a~r-~~~~~~I~~~L~~g~~Vi~DRy~~S~~ayq~~~--~~-~---~~~~i~~l~~~~-~~~~~PDl~i~Ld~~~e~~ 135 (197)
T 3hjn_A 64 FLASR-NLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFG--RN-L---GKEIVEELNDFA-TDGLIPDLTFYIDVDVETA 135 (197)
T ss_dssp HHHHH-HHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTT--TC-S---CHHHHHHHHHHH-HTTCCCSEEEEEECCHHHH
T ss_pred HHHHH-HHHHHHHHHHHHCCCeEEecccchHHHHHHHhc--cC-C---CHHHHHHHHhhh-hcCCCCCceeecCcChHHH
Confidence 44455 455677888899999999999999999997532 12 1 222233332222 2345799999999999999
Q ss_pred HHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhhc
Q psy6807 230 KENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFD 297 (395)
Q Consensus 230 ~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f~ 297 (395)
++|..+|++ +|. .+|++++.+.|.+.... .+..++++| +.+++|+|.++|....-.
T Consensus 136 ~~R~~~~dr-~e~------~ef~~rv~~~y~~la~~---~~~~~~~ID--a~~~~eeV~~~I~~~i~~ 191 (197)
T 3hjn_A 136 LKRKGELNR-FEK------REFLERVREGYLVLARE---HPERIVVLD--GKRSIEEIHRDVVREVKR 191 (197)
T ss_dssp HHHC---CT-TCC------HHHHHHHHHHHHHHHHH---CTTTEEEEE--TTSCHHHHHHHHHHHHSC
T ss_pred HHhCcCcCc-ccc------HHHHHHHHHHHHHHHHh---CCCCEEEEc--CCCCHHHHHHHHHHHHHH
Confidence 999877665 342 58999999999875432 234689999 778999999999775543
No 11
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.81 E-value=6.8e-20 Score=171.34 Aligned_cols=199 Identities=18% Similarity=0.128 Sum_probs=126.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
+.+++|+|+|++||||||+++.|++.++. .........+ .+.. +... ...++.++........
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p---~~~~---~g~~----------i~~~~~~~~~~~~~~~ 86 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREP---GGVP---TGEE----------IRKIVLEGNDMDIRTE 86 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTT---TTCH---HHHH----------HHHHTTC---CCHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCC---CCCc---hHHH----------HHHHHhCCCCCCHHHH
Confidence 46789999999999999999999999975 4321111100 1100 0011 1333444332223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
.+.+...|+.++.+.+...+..|..||+||+++|+++|+... ..+.........++. ...+.||++|||++|+
T Consensus 87 ~ll~~a~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~---r~~~~~~~~~l~~~~----~~~~~pd~vi~L~~~~ 159 (229)
T 4eaq_A 87 AMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYA---RGIGVEEVRALNEFA----INGLYPDLTIYLNVSA 159 (229)
T ss_dssp HHHHHHHHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCC---SCSCHHHHHHHHHHH----HTTCCCSEEEEEECCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhh---cCCCHHHHHHHHHHH----hcCCCCCEEEEEeCCH
Confidence 455667777665444556678999999999999999886321 123333333333322 2345899999999999
Q ss_pred HHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 227 SKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 227 e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
+++.+|+.+|++..+.. ..-..+|++++.+.|.+.... ....++++| +.+++|+|.++|...-
T Consensus 160 e~~~~R~~~R~~~~dr~-e~~~~~~~~rv~~~y~~l~~~---~~~~~~vID--a~~s~eev~~~I~~~l 222 (229)
T 4eaq_A 160 EVGRERIIKNSRDQNRL-DQEDLKFHEKVIEGYQEIIHN---ESQRFKSVN--ADQPLENVVEDTYQTI 222 (229)
T ss_dssp HHHHHHHHHC-----CC-CHHHHHHHHHHHHHHHHHTTT---CTTTEEEEE--TTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccch-hhhhHHHHHHHHHHHHHHHHh---CCCCEEEEe--CCCCHHHHHHHHHHHH
Confidence 99999999997542211 002478999999999886432 135688999 7889999999997743
No 12
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.81 E-value=1.1e-19 Score=172.51 Aligned_cols=215 Identities=16% Similarity=0.188 Sum_probs=130.9
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHh-ccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCccc
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADEL-DMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHT 143 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l-~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~ 143 (395)
.+++++|+|+|++||||||+++.|++.| +..+++++........ .......+...- |.+ ...++.|+.++. ..+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ep~~~~~~~~~~~~~~~~~~~~~-p~g--~~~~~~~~~~~~-~~~ 96 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQ-KNG--GNVLQMMYEKPE-RWS 96 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEECCCHHHHTSCCCC-------------CC--CCHHHHHHHCHH-HHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEecchhhhhcccccccccccccccc-ccC--CchHHHHHhCch-hcc
Confidence 3578999999999999999999999998 5666665421110000 000000000000 111 112355565543 345
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HH-------HhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCC--
Q psy6807 144 IAFQIRMLQLRFSVYVDALA-HM-------LSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPL-- 213 (395)
Q Consensus 144 ~~~ql~~~~~R~~q~~~al~-~~-------l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l-- 213 (395)
+..|.+++..|+.+..+... |+ +..|..||.||+++|.++ +..+.+...++..|.++...+....
T Consensus 97 ~~~~~~~l~~~~r~~~~~~~~~l~~~i~~~l~~g~~Vi~Dry~~s~~~-----y~~~~~~~~e~~~~~~~~~~l~~~~~~ 171 (263)
T 1p5z_B 97 FTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNL-----YESECMNETEWTIYQDWHDWMNNQFGQ 171 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSGGGGSSSCEEEEESCHHHHHHTHHHHH-----HHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhccCCCceEEecceeecHHHHHHHH-----HHcCCCCHHHHHHHHHHHHHHHHhhhc
Confidence 66777765556554322211 32 234555555555555554 4455666666666666654432222
Q ss_pred -CCCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhccc-----ccC--CCCcEEEEeCCCCCChh
Q psy6807 214 -FKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLP-----QIS--DSSELLVYDWSDGGDPE 285 (395)
Q Consensus 214 -~~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~-----~~~--~~~~vli~D~t~~~~~e 285 (395)
..||++|||++|++++.+|+.+|+++.|.. .+.+|++.+.+.|++++.. ... ....++++| +.++++
T Consensus 172 ~~~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~---~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id--~~~~~e 246 (263)
T 1p5z_B 172 SLELDGIIYLQATPETCLHRIYLRGRNEEQG---IPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLD--VNEDFK 246 (263)
T ss_dssp HHCCSEEEEEECCHHHHHHHHHHHCCGGGTT---CCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEE--CCSCHH
T ss_pred cCCCCeEEEEECCHHHHHHHHHhcCCccccC---ccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEE--CCCCHH
Confidence 369999999999999999999999987753 5689999999999887421 110 114588999 556999
Q ss_pred HHHHHHHHh
Q psy6807 286 VVVEDIERI 294 (395)
Q Consensus 286 ~V~edIe~l 294 (395)
+|.++|...
T Consensus 247 ev~~~I~~~ 255 (263)
T 1p5z_B 247 DKYESLVEK 255 (263)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999764
No 13
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.79 E-value=3.1e-19 Score=166.29 Aligned_cols=199 Identities=22% Similarity=0.302 Sum_probs=117.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcc-ccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDM-IALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTI 144 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~-~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~ 144 (395)
+.+.+|+|+|++||||||+++.|+...|. ....++... +.. .|..+ ...++.++. ..++
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~~g~v~~~~~~~~~--~~~~~~~~~----------------~~~~~~~~~-~~~~ 78 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEK--WRNVNGVNL----------------LELMYKDPK-KWAM 78 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTTTEEEECCTHHH--HTCBTTBCH----------------HHHHHHSHH-HHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhccCCeEEEecCHHH--hhcccCCCh----------------HHHHHhChH-hhhh
Confidence 46789999999999999999999975221 111111000 000 00000 112222222 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcch-HHHHHHHHhcCCCChhHHHHHHHHHHHhCC-CCCCCCEEEEE
Q psy6807 145 AFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSD-FIFIEAMDKCGYITKRHKDIYYEITRFTLP-PLFKPHLVIYL 222 (395)
Q Consensus 145 ~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd-~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~-~l~~PdlvIyL 222 (395)
.+|...+...+.+... . .-...++.+|++.|| |+|....|+.+.+....+..+.+++..+.. ..+.||++|||
T Consensus 79 ~~q~~~l~~~~~~~~~---~--~i~~~l~~~r~v~~dry~~s~~ayq~~~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~L 153 (230)
T 2vp4_A 79 PFQSYVTLTMLQSHTA---P--TNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIYL 153 (230)
T ss_dssp HHHHHHHHHHHHHHHC---C--CCSSEEEEESCHHHHHHTHHHHHHHHTSSCHHHHHHHHHHHHHHHHHBCCCCSEEEEE
T ss_pred hhHHHHHHHHHHHHHh---c--cccCceeecCCccccHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 4454433222222110 0 123456778888888 677777676677888888888877664432 24679999999
Q ss_pred ECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhccccc-CCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 223 DIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQI-SDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 223 d~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~-~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++|++++++|+.+|+++.|.. .+.+|++++...|.++..... ...++++++| +.+++++|.++|..+
T Consensus 154 d~~~e~~~~Ri~~R~r~~e~~---~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId--~~~~~eev~~~I~~~ 221 (230)
T 2vp4_A 154 RTSPEVAYERIRQRARSEESC---VPLKYLQELHELHEDWLIHQRRPQSCKVLVLD--ADLNLENIGTEYQRS 221 (230)
T ss_dssp ECCHHHHHHHHHHHCCGGGTT---CCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEE--CCC------------
T ss_pred eCCHHHHHHHHHHcCCccccc---CcHHHHHHHHHHHHHHHHHhcccCCCCEEEEE--CCCCHHHHHHHHHHH
Confidence 999999999999999876652 457899999999998753211 2356789999 678999999998764
No 14
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=99.78 E-value=3.1e-19 Score=175.73 Aligned_cols=186 Identities=12% Similarity=0.111 Sum_probs=121.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcccc----CCCCcccccccc-CC-CccccchhhhhhhhhhhhhhhhhcCCC---
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIA----LPPANMDMFYKR-GD-FDWRSLDAEWSNENLKSYDEKTFCKDP--- 138 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~----~~e~~~d~~~~~-~g-~d~~~l~~~l~p~~~~~~~~~~f~~dp--- 138 (395)
++++|+|+|++||||||+++.|++.|+... .+||.- .+.. .| ..++ .++.++
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~~~~v~~trEPg~--~w~~~~g~e~ir-----------------~~~~d~~~~ 66 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPMA--YWRTLFETDVIS-----------------GIYDTQNRK 66 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGCSSCEEEECCCHH--HHHTSSSSCHHH-----------------HHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccCCcEEEEeCCCC--ccccccchHHHH-----------------HHHHhhhhc
Confidence 468999999999999999999999987532 345421 0000 11 1121 122111
Q ss_pred -----C----CcccHHHHHHHHH---HHHHHHHHHH-----HHHHhcCCeEEEeccCcchHH-HHHHHHhcCCCChhHHH
Q psy6807 139 -----K----HFHTIAFQIRMLQ---LRFSVYVDAL-----AHMLSTGQGAIVQRCPFSDFI-FIEAMDKCGYITKRHKD 200 (395)
Q Consensus 139 -----~----~~~~~~~ql~~~~---~R~~q~~~al-----~~~l~tG~~VIlDRs~~Sd~v-f~~a~~~~g~i~~~~~~ 200 (395)
. ....+.+|+.|.. .|..+..+.+ .+.+..|..||+||+++|+.+ |+.+.++.|.++..++.
T Consensus 67 ~~~~~~~~~~e~~~~~lQLlf~a~la~ra~~~~~~i~~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~~yq~g~l~~~~i~ 146 (334)
T 1p6x_A 67 QQGNLAVDDAALITAHYQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGDMSMCALM 146 (334)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEECCCSCCSEEEEEESCTHHHHTHHHHHHHHTTSSCHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCccccCCCEEEEeCChHHHHHHHHHHHHhcCCCCHHHHH
Confidence 0 0123566666652 3433322111 134567888999999999995 88777888888765432
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccC-CCCcEEEEeCC
Q psy6807 201 IYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQIS-DSSELLVYDWS 279 (395)
Q Consensus 201 ~y~~~~~~~~~~l~~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~-~~~~vli~D~t 279 (395)
++.. .....+.||++||||+|++++++||++||++.|. ++.+|+++|.+.|.+++..-.. ..+.++.+||.
T Consensus 147 ---~l~~-~~~~~~~PDLtIyLd~~pe~~l~RI~~RgR~~Er----i~~eyl~~vr~~Y~~l~~~~~~l~~~~~~~~~w~ 218 (334)
T 1p6x_A 147 ---AMVA-TLPREPQGGNIVVTTLNVEEHIRRLRTRARIGEQ----IDITLIATLRNVYFMLVNTCHFLRSGRVWRDGWG 218 (334)
T ss_dssp ---HHHT-TCCCCCTTEEEEEEECCHHHHHHHHHHHSCTTCC----CCHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTTT
T ss_pred ---HHHH-HccCCCCCCEEEEEECCHHHHHHHHHhcCCCccc----CCHHHHHHHHHHHHHHHHHHHhhccCCceeechh
Confidence 3322 2223357999999999999999999999998775 5789999999999988643211 23445555664
Q ss_pred C
Q psy6807 280 D 280 (395)
Q Consensus 280 ~ 280 (395)
.
T Consensus 219 ~ 219 (334)
T 1p6x_A 219 E 219 (334)
T ss_dssp T
T ss_pred h
Confidence 3
No 15
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=99.78 E-value=8.9e-19 Score=174.50 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=112.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc---cccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCC----
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD---MIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPK---- 139 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~---~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~---- 139 (395)
++++|+|+|++||||||+++.|++.|+ ....+||.-. ... .|. + .+..||.+|+
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~~~gvv~trEPg~~--w~~~~gn--~--------------~Lr~~yld~~r~~~ 109 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTY--WRVLGAS--E--------------TIANIYTTQHRLDQ 109 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC----CCEEEECCCHHH--HHTTSSS--C--------------HHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhhhCCEEEEeCCCCc--cccccch--H--------------HHHHHHhChhhhcc
Confidence 456799999999999999999999875 3444555210 000 010 0 1123333321
Q ss_pred ---Ccc-c----HHHHHHHHHHHHHHHHHHHHHH----------HhcCCeEEEeccCcchH-HHHHHHHhcCCCChhHHH
Q psy6807 140 ---HFH-T----IAFQIRMLQLRFSVYVDALAHM----------LSTGQGAIVQRCPFSDF-IFIEAMDKCGYITKRHKD 200 (395)
Q Consensus 140 ---~~~-~----~~~ql~~~~~R~~q~~~al~~~----------l~tG~~VIlDRs~~Sd~-vf~~a~~~~g~i~~~~~~ 200 (395)
+.. + +..|+.|+ .|+....+.+.+. +..|+.||+||+++|+. +|+.+.+..|.++..++.
T Consensus 110 ~~~~~~ea~l~~a~~QL~fa-~r~~~~a~r~~~~i~paL~~~~al~~g~iVI~DR~~~Ss~~ayq~~~y~~g~l~~~~i~ 188 (376)
T 1of1_A 110 GEISAGDAAVVMTSAQITMG-MPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVL 188 (376)
T ss_dssp TSSCHHHHHHHHHHHHHHHH-HHHHHHHHHHGGGEEEEC-----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh-ccchHHHHHHHHHhhhhhcccccccCCCeEEEeeChhHHHHHHHHHHHhcCCCCHHHHH
Confidence 001 2 34566655 3443333333222 35688999999999998 899988888888876554
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcc
Q psy6807 201 IYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYL 264 (395)
Q Consensus 201 ~y~~~~~~~~~~l~~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l 264 (395)
... . ......+|++++++++|++++++||++||++.|. ++.+|+++|.+.|.+++.
T Consensus 189 ~l~---~-~~~~~~ppdlt~Lldl~pe~~l~RI~~RgR~~Er----i~leyl~rVr~~Y~~la~ 244 (376)
T 1of1_A 189 AFV---A-LIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGER----LDLAMLAAIRRVYGLLAN 244 (376)
T ss_dssp HHH---H-TCCCCCTTCEEEEEECCHHHHHHHHHHSCCTTCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHH---H-hcccCCCCeEEEEecCCHHHHHHHHHhcCCCccc----CCHHHHHHHHHHHHHHHH
Confidence 432 2 2333456789999999999999999999988776 579999999999987653
No 16
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=99.77 E-value=1.3e-18 Score=171.15 Aligned_cols=170 Identities=18% Similarity=0.206 Sum_probs=111.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc---cccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCC----
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD---MIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPK---- 139 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~---~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~---- 139 (395)
.+++|+|+|++||||||+++.|++.|+ ....+||.-. ... .|. + .+..||.+|+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~gv~~trEPg~~--w~~~~g~--~--------------~Lr~~yld~~r~~~ 64 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTY--WRVLGAS--E--------------TIANIYTTQHRLDQ 64 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC----CCEEEECCCHHH--HHTTSSS--C--------------HHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhhhCCEEEEeCCCCc--ccccccH--H--------------HHHHHHhChhhhcc
Confidence 367999999999999999999999876 3444555210 000 010 0 1123333321
Q ss_pred ---Ccc-c----HHHHHHHHHHHHHHHHHHHHHH----------HhcCCeEEEeccCcchH-HHHHHHHhcCCCChhHHH
Q psy6807 140 ---HFH-T----IAFQIRMLQLRFSVYVDALAHM----------LSTGQGAIVQRCPFSDF-IFIEAMDKCGYITKRHKD 200 (395)
Q Consensus 140 ---~~~-~----~~~ql~~~~~R~~q~~~al~~~----------l~tG~~VIlDRs~~Sd~-vf~~a~~~~g~i~~~~~~ 200 (395)
+.. + +..|+.+. .|+....+.+.+. +..|+.||+||+++|+. +|+.+.+..|.++..++.
T Consensus 65 ~~~~~~ea~lf~~~~qL~fa-~r~l~~a~r~~~~i~p~l~~~~~l~~g~~VI~DR~~~Ss~~~yq~~~~~~g~l~~~~~~ 143 (331)
T 1e2k_A 65 GEISAGDAAVVMTSAQITMG-MPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVL 143 (331)
T ss_dssp TSSCHHHHHHHHHHHHHHHH-HHHHHHHHHHGGGEEEECC----CCCSEEEEEECCHHHHHTHHHHHHHHTTSSCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhHHhhccccccCCCEEEEecCchHhHHHHHHHHHhcCCCCHHHHH
Confidence 000 2 34555544 3443333333332 24688999999999998 899888888888866554
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcc
Q psy6807 201 IYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYL 264 (395)
Q Consensus 201 ~y~~~~~~~~~~l~~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l 264 (395)
... .......+|++++++++|++++++||++||++.|. ++.+|+++|.+.|.+++.
T Consensus 144 ~l~----~~~~~~~ppdlt~lldl~pe~~l~RI~~Rgr~~Er----i~~~yl~rvr~~Y~~l~~ 199 (331)
T 1e2k_A 144 AFV----ALIPPTLPGTNIVLGALPEDRHIDRLAKRQRPGER----LDLAMLAAIRRVYGLLAN 199 (331)
T ss_dssp HHH----HTCCCCCTTCEEEEEECCHHHHHHHHHHSCCTTCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHH----HhcccCCCCeEEEEEcCCHHHHHHHHHhcCCCccc----CCHHHHHHHHHHHHHHHH
Confidence 432 22233456789999999999999999999987776 579999999999987643
No 17
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.76 E-value=6.7e-18 Score=151.70 Aligned_cols=186 Identities=19% Similarity=0.216 Sum_probs=114.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---ccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADEL---DMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l---~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
++|+|+|++||||||+++.|++.+ |..++ ..+.+ .+... ...+ ..++.+.. ......
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~---~~~~~---~~~~~---g~~~----------~~~~~~~~-~~~~~~ 60 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVI---LKREP---GGTET---GEKI----------RKILLEEE-VTPKAE 60 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EE---EEESS---CSSHH---HHHH----------HHHHHHSC-CCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE---EeeCC---CCCcH---HHHH----------HHHHHhcC-CCHHHH
Confidence 479999999999999999999999 66554 22111 11000 0000 11111111 123344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
.+.+...|+.+... +...+..|..||+||+++|+++|+.... .+.. ....++... ....+.||++|||++|+
T Consensus 61 ~~~~~~~r~~~~~~-i~~~l~~g~~vi~dr~~~s~~~~~~~~~---~~~~---~~~~~~~~~-~~~~~~~d~vi~l~~~~ 132 (197)
T 2z0h_A 61 LFLFLASRNLLVTE-IKQYLSEGYAVLLDRYTDSSVAYQGFGR---NLGK---EIVEELNDF-ATDGLIPDLTFYIDVDV 132 (197)
T ss_dssp HHHHHHHHHHHHHH-HTTC----CEEEEESCHHHHHHHTTTTT---CSCH---HHHHHHHHH-HHTTCCCSEEEEEECCH
T ss_pred HHHHHHHHHHHHHH-HHHHHhCCCEEEECCChhHHHHHHHhcc---CCCH---HHHHHHHHH-hcCCCCCCEEEEEeCCH
Confidence 45566777766555 6667788999999999999998864321 1222 222222221 12345799999999999
Q ss_pred HHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 227 SKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 227 e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
+++.+|+.+|++ .|. .++++++...|.+.... ....++++| +.++++++.++|..+-
T Consensus 133 e~~~~Rl~~R~~-~~~------~~~~~~~~~~~~~~~~~---~~~~~~~Id--~~~~~e~~~~~i~~~l 189 (197)
T 2z0h_A 133 ETALKRKGELNR-FEK------REFLERVREGYLVLARE---HPERIVVLD--GKRSIEEIHRDVVREV 189 (197)
T ss_dssp HHHHHHC---CC-CCC------HHHHHHHHHHHHHHHHH---CTTTEEEEE--TTSCHHHHHHHHHHHT
T ss_pred HHHHHHHhccCc-ccH------HHHHHHHHHHHHHHHHh---CCCCEEEEe--CCCCHHHHHHHHHHHH
Confidence 999999999954 222 37888888888775432 235688899 6789999999998743
No 18
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.76 E-value=2.2e-17 Score=149.74 Aligned_cols=191 Identities=17% Similarity=0.170 Sum_probs=115.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
++++|+|+|++||||||+++.|+++++..+ +....+.+ .|..++. .+ ........+ .....+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~~---~~~~i~~---~~--------~~~~~~~~~---~~~~~~ 64 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEWN---SSDWIHD---II--------KEAKKKDLL---TPLTFS 64 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEETT---CCCHHHH---HH--------HHHTTTSCC---CHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecCC---cHHHHHH---HH--------hccccccCC---CHHHHH
Confidence 468999999999999999999999998753 11111110 1111111 11 000000011 122233
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChH
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVS 227 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e 227 (395)
+.+...|+.+....+...+..|..||+||+++|.++|+ .. .| +. .+.+ ......+..|+++|||++|++
T Consensus 65 ~~~~~~r~~~~~~~i~~~l~~g~~vi~D~~~~~~~~~~-~~--~~-~~---~~~~----~~l~~~~~~~~~vi~l~~~~e 133 (213)
T 2plr_A 65 LIHATDFSDRYERYILPMLKSGFIVISDRYIYTAYARD-SV--RG-VD---IDWV----KKLYSFAIKPDITFYIRVSPD 133 (213)
T ss_dssp HHHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHH-HT--TT-CC---HHHH----HHHTTTSCCCSEEEEEECCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeCcHhHHHHHH-Hh--hC-CC---HHHH----HHHHhcCCCCCEEEEEeCCHH
Confidence 44445666555455556677899999999999988876 21 12 21 2222 222233456999999999999
Q ss_pred HHHHHHh-hcC--CccccCC-----CC-C--cHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 228 KVKENVK-KRN--NPWEVNS-----PI-F--NDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 228 ~~~eRI~-~Rg--r~~E~~~-----~~-v--~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++.+|+. +|+ ...+... .. . ..++.+++...|.++... . .++++| +.+++++|.++|..+
T Consensus 134 ~~~~Rl~~~R~~~~~~~~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~~~----~-~~~~Id--~~~~~e~v~~~I~~~ 204 (213)
T 2plr_A 134 IALERIKKSKRKIKPQEAGADIFPGLSPEEGFLKYQGLITEVYDKLVKD----E-NFIVID--GTKTPKEIQIQIRKF 204 (213)
T ss_dssp HHHHHHHHTTCCCCTTTTTTTTCTTSCHHHHHHHHHHHHHHHHHHHTTT----T-TCEEEE--TTSCHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccccccccccccchhhhHHHHHHHHHHHHHHHHhh----C-CEEEEE--CCCCHHHHHHHHHHH
Confidence 9999999 887 2211000 00 0 146777777778765421 2 577889 568999999999764
No 19
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.75 E-value=2.6e-17 Score=144.40 Aligned_cols=161 Identities=19% Similarity=0.318 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIR 149 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~ 149 (395)
++|+|+|++||||||+++.|+++++..++..+... . +. . .
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~--------------~---~~--------~-----~---------- 41 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFE--------------L---AK--------S-----G---------- 41 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHH--------------H---HT--------T-----C----------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccc--------------c---ch--------h-----H----------
Confidence 58999999999999999999999998877433110 0 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChHHH
Q psy6807 150 MLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKV 229 (395)
Q Consensus 150 ~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~ 229 (395)
....+. . ...+..|..||.||+.+|+.+|+......+.+....... ... .++.|+++|||++|++++
T Consensus 42 -~~~~~~----~-~~~l~~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~----l~~---~~~~~~~~i~l~~~~e~~ 108 (173)
T 3kb2_A 42 -NEKLFE----H-FNKLADEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRF----IED---KIKAKAKVVYLHADPSVI 108 (173)
T ss_dssp -HHHHHH----H-HHHHTTCCSEEEESCHHHHHHHTTTBTTCCCCCHHHHHH----HHH---HHTTTEEEEEEECCHHHH
T ss_pred -HHHHHH----H-HHHHHhCCCeEEeeeecchHHHHHHHHHhhHhhHHHHHH----Hhc---cCCCCCEEEEEeCCHHHH
Confidence 000111 1 123467899999999999999864322223333332222 221 124689999999999999
Q ss_pred HHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCC-CChhHHHHHHHHh
Q psy6807 230 KENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDG-GDPEVVVEDIERI 294 (395)
Q Consensus 230 ~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~-~~~e~V~edIe~l 294 (395)
.+|+.+|+++.+. .++++.+.+.|++..... ....+++| +. .++++|+++|...
T Consensus 109 ~~R~~~r~r~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~id--~~~~~~~ev~~~I~~~ 163 (173)
T 3kb2_A 109 KKRLRVRGDEYIE------GKDIDSILELYREVMSNA---GLHTYSWD--TGQWSSDEIAKDIIFL 163 (173)
T ss_dssp HHHHHHHSCSCCC------HHHHHHHHHHHHHHHHTC---SSCEEEEE--TTTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCcchh------hhHHHHHHHHHHHHHhhc---CCCEEEEE--CCCCCHHHHHHHHHHH
Confidence 9999999877653 578888999888754321 24677889 44 5999999999763
No 20
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.75 E-value=3.6e-17 Score=148.86 Aligned_cols=192 Identities=17% Similarity=0.217 Sum_probs=116.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
+++++|+|+|++||||||+++.|+++++..+++...+..+- .+.... .. ...++.+.........
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~--~~~~~~---~~----------i~~~~~~~~~~~~~~~ 71 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPE--RSTEIG---KL----------LSSYLQKKSDVEDHSV 71 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--TTSHHH---HH----------HHHHHTTSSCCCHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCC--CCCcHH---HH----------HHHHHhcCCCCCHHHH
Confidence 45789999999999999999999999987776432111100 010000 00 1112221111112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
...+...|+... +.+...+..|..||+||+.+|.++|.... .| +. .++.......+..|+++|||++|+
T Consensus 72 ~~~~~~~r~~~~-~~i~~~l~~~~~vi~dr~~~s~~~~~~~~--~~-~~-------~~~~~~l~~~~~~~d~vi~l~~~~ 140 (215)
T 1nn5_A 72 HLLFSANRWEQV-PLIKEKLSQGVTLVVDRYAFSGVAFTGAK--EN-FS-------LDWCKQPDVGLPKPDLVLFLQLQL 140 (215)
T ss_dssp HHHHHHHHHTTH-HHHHHHHHTTCEEEEESCHHHHHHHHHTS--TT-CC-------HHHHHGGGTTSBCCSEEEEEECCH
T ss_pred HHHHHHHHHHHH-HHHHHHHHCCCEEEEeCCcccHHHHHhhc--CC-CC-------HHHHHHHHhCCCCCCEEEEEeCCH
Confidence 333444454432 34555667899999999999998886431 12 11 122222223345789999999999
Q ss_pred HHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 227 SKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 227 e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
+++.+|+..|....| ..++++.+...|.++... ..++++++| +.++++++.++|..+-
T Consensus 141 e~~~~Rl~r~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~Id--~~~~~e~~~~~i~~~l 198 (215)
T 1nn5_A 141 ADAAKRGAFGHERYE------NGAFQERALRCFHQLMKD---TTLNWKMVD--ASKSIEAVHEDIRVLS 198 (215)
T ss_dssp HHHHHC-----CTTC------SHHHHHHHHHHHHHHTTC---TTSCEEEEE--TTSCHHHHHHHHHHHH
T ss_pred HHHHHHhccCccccc------hHHHHHHHHHHHHHHHHh---CCCCEEEEE--CCCCHHHHHHHHHHHH
Confidence 999999975433333 257888888888875432 135778889 5789999999997643
No 21
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.74 E-value=4e-17 Score=145.96 Aligned_cols=186 Identities=20% Similarity=0.259 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh---ccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADEL---DMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l---~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
++|+|+|++||||||+++.|++++ |..++ +.|.+ .+.. +...+ ..++.++. ......
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i---~~d~~---~~~~---~~~~i----------~~~~~~g~-~~~~~~ 60 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS---LYREP---GGTK---VGEVL----------REILLTEE-LDERTE 60 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE---EEESS---CSSH---HHHHH----------HHHHHHSC-CCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE---EEeCC---CCCc---hHHHH----------HHHHcCCC-CCHHHH
Confidence 479999999999999999999998 66555 22221 0000 00000 11121211 111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
...+...|+.+..+.+...+..|..||+||+.+|.++|.. +........+.++....... ..|+++|||++|+
T Consensus 61 ~~~~~~~~~~~l~~~i~~~l~~~~~vi~dr~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~-~~~d~vi~l~~~~ 133 (195)
T 2pbr_A 61 LLLFEASRSKLIEEKIIPDLKRDKVVILDRFVLSTIAYQG------YGKGLDVEFIKNLNEFATRG-VKPDITLLLDIPV 133 (195)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHT------TTTCCCHHHHHHHHHHHHTT-CCCSEEEEEECCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEECcchhHHHHHcc------ccCCCCHHHHHHHHHHhhcC-CCCCEEEEEeCCH
Confidence 2333445555544455566788999999999999887752 21111222233322211111 2689999999999
Q ss_pred HHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 227 SKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 227 e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
+++.+|+.+|++. + ..++++++...|++..... ..++++| +.++++++.++|..+-
T Consensus 134 e~~~~Rl~~r~~~-~------~~~~~~~~~~~~~~~~~~~----~~~~~Id--~~~~~~~~~~~i~~~l 189 (195)
T 2pbr_A 134 DIALRRLKEKNRF-E------NKEFLEKVRKGFLELAKEE----ENVVVID--ASGEEEEVFKEILRAL 189 (195)
T ss_dssp HHHHHHHHTTTCC-C------CHHHHHHHHHHHHHHHHHS----TTEEEEE--TTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhccCcc-c------hHHHHHHHHHHHHHHHhhC----CCEEEEE--CCCCHHHHHHHHHHHH
Confidence 9999999877542 2 3678888888888754321 3567889 5789999999997753
No 22
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.72 E-value=7.8e-17 Score=146.53 Aligned_cols=189 Identities=17% Similarity=0.186 Sum_probs=116.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
++++|+|+|++||||||+++.|+++++..+++...+..+ ..+... ... ...++.+..........
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~--~~~~~~---g~~----------i~~~~~~~~~~~~~~~~ 73 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFP--NRETGI---GQI----------ISKYLKMENSMSNETIH 73 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS--CTTSHH---HHH----------HHHHHTTSSCCCHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecC--CCCCcH---HHH----------HHHHHhcCCCCCHHHHH
Confidence 578999999999999999999999999877643211100 001000 000 11122221111122223
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChH
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVS 227 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e 227 (395)
..+...|.... ..+...+..|..||+|+++.|..+|+.+.. + +. .++.......+..|+++|||++|++
T Consensus 74 ~~~~~~~~~~~-~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~--~-~~-------~~~l~~~~~~~~~~d~vi~l~~~~e 142 (212)
T 2wwf_A 74 LLFSANRWEHM-NEIKSLLLKGIWVVCDRYAYSGVAYSSGAL--N-LN-------KTWCMNPDQGLIKPDVVFYLNVPPN 142 (212)
T ss_dssp HHHHHHHHTTH-HHHHHHHHHTCEEEEECCHHHHHHHHHHHS--C-CC-------HHHHHGGGTTSBCCSEEEEEECCTT
T ss_pred HHHHHHHHHHH-HHHHHHHhCCCEEEEecchhhHHHHHHhcc--C-CC-------HHHHHHHhhCCCCCCEEEEEeCCHH
Confidence 33333443322 344555678999999999998888765421 1 11 1122211233457899999999999
Q ss_pred HHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 228 KVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 228 ~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
++.+|+.+|....+ ..++++.+...|.+... ....+++| +.++++++.++|..+-
T Consensus 143 ~~~~Rl~~r~~r~~------~~~~~~~~~~~~~~~~~-----~~~~~~Id--~~~~~~~~~~~i~~~l 197 (212)
T 2wwf_A 143 YAQNRSDYGEEIYE------KVETQKKIYETYKHFAH-----EDYWINID--ATRKIEDIHNDIVKEV 197 (212)
T ss_dssp GGGGSTTTTSSTTC------SHHHHHHHHHHGGGGTT-----CTTEEEEE--CSSCHHHHHHHHHHHH
T ss_pred HHHHhhccCccccc------HHHHHHHHHHHHHHHhc-----cCCEEEEE--CCCCHHHHHHHHHHHH
Confidence 99999977633333 25778888888876432 34577889 5589999999997753
No 23
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.72 E-value=6.9e-17 Score=145.99 Aligned_cols=185 Identities=18% Similarity=0.208 Sum_probs=115.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-ccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADEL-DMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l-~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
++++|+|+|++||||||+++.|++++ |..++. ++.+. .+... ... ...++.+.........
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~---~~~~~--~~~~~---g~~----------i~~~~~~~~~~~~~~~ 64 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKY---LNFPQ--RSTVT---GKM----------IDDYLTRKKTYNDHIV 64 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEE---EESSC--TTSHH---HHH----------HHHHHTSSCCCCHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEE---EecCC--CCCcH---HHH----------HHHHHhcCCCCCHHHH
Confidence 57899999999999999999999998 455441 11110 00000 000 1122222111122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
++.+...|+... +.+...+..|..||+||+++|.++|+.+. | +. .+....+ ....+.||++|||++|+
T Consensus 65 ~~l~~~~r~~~~-~~i~~~l~~~~~vi~Dr~~~s~~~~~~~~---g-~~---~~~~~~~----~~~~~~~d~vi~l~~~~ 132 (204)
T 2v54_A 65 NLLFCANRWEFA-SFIQEQLEQGITLIVDRYAFSGVAYAAAK---G-AS---MTLSKSY----ESGLPKPDLVIFLESGS 132 (204)
T ss_dssp HHHHHHHHHTTH-HHHHHHHHTTCEEEEESCHHHHHHHHHHT---T-CC---HHHHHHH----HTTSBCCSEEEEECCCH
T ss_pred HHHHHHHHHHHH-HHHHHHHHCCCEEEEECchhhHHHHHHcc---C-CC---HHHHHHH----hcCCCCCCEEEEEeCCH
Confidence 444455665443 45555667899999999999999887531 3 22 1122221 12345799999999999
Q ss_pred HHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 227 SKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 227 e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
+++.+ +|+..... ..++++++...|.+.... ....++++| +.++++++.++|..+-
T Consensus 133 e~~~~---~R~~d~~e-----~~~~~~rl~~~y~~~~~~---~~~~~~~Id--~~~~~~~v~~~i~~~l 188 (204)
T 2v54_A 133 KEINR---NVGEEIYE-----DVTFQQKVLQEYKKMIEE---GDIHWQIIS--SEFEEDVKKELIKNIV 188 (204)
T ss_dssp HHHTT---CCSSSTTC-----CSHHHHHHHHHHHHHHTT---CSSCEEEEC--TTSCHHHHHHHHHHHH
T ss_pred HHHHh---hcCccccc-----HHHHHHHHHHHHHHHHHh---CCCcEEEEE--CCCCHHHHHHHHHHHH
Confidence 99988 56532111 247888898888875421 125778889 5689999999997754
No 24
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=99.70 E-value=5e-18 Score=167.35 Aligned_cols=175 Identities=12% Similarity=0.063 Sum_probs=108.7
Q ss_pred cCCeEEEEEcCCCCChHHHH-HHHHHHhccc----cCCCCcccccccc-CC-CccccchhhhhhhhhhhhhhhhhcCCCC
Q psy6807 67 QNSKIIVVEGPIASGKTEFC-KKLADELDMI----ALPPANMDMFYKR-GD-FDWRSLDAEWSNENLKSYDEKTFCKDPK 139 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTla-k~La~~l~~~----~~~e~~~d~~~~~-~g-~d~~~l~~~l~p~~~~~~~~~~f~~dp~ 139 (395)
.++++|+|+|++||||||++ +.|++.++.. +.+||.- +... .| ..++.+ + +...+.+..
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g~vv~trEPgg--~w~t~~g~e~lr~i---~---------l~~~~~~~~ 75 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLS--YWRNLAGEDAICGI---Y---------GTQTRRLNG 75 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCCHH--HHTTBTTBCHHHHH---H---------HHHHHHHTT
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhhCCcEEEEeCCCc--cccCcccHHHHHHH---H---------hchhhhccc
Confidence 45789999999999999999 9999988744 4555521 0001 12 112211 1 111110011
Q ss_pred Ccc-------cHHHHHHHHHHHHHHHHHHHHH------------HHhcCCeEEEeccCcchH-HHHHHHHhcCCCChhHH
Q psy6807 140 HFH-------TIAFQIRMLQLRFSVYVDALAH------------MLSTGQGAIVQRCPFSDF-IFIEAMDKCGYITKRHK 199 (395)
Q Consensus 140 ~~~-------~~~~ql~~~~~R~~q~~~al~~------------~l~tG~~VIlDRs~~Sd~-vf~~a~~~~g~i~~~~~ 199 (395)
... .+..|+.| +.++....+.+.. .+..|..||.||+++|+. +|..+.+..|.++..++
T Consensus 76 ~~s~~~a~~~~~e~ql~f-a~p~~~la~R~~~h~~~~i~~~~~pal~~g~~VI~DR~~~Ss~a~f~~~r~~~g~l~~~~~ 154 (341)
T 1osn_A 76 DVSPEDAQRLTAHFQSLF-CSPHAIMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMSPAAL 154 (341)
T ss_dssp SSCHHHHHHHHHHHHHHT-HHHHHHHHHHHHHTSCCCCSCCSCCCSSCCEEEEEESCTHHHHTHHHHHHHHHTSSCGGGH
T ss_pred ccchhhhhHHHHHHHHHH-HhHHHHHHHHHHHHHhhhhccccccccCCCCeEEEeCCccHHHHHHHhhhhhcCCCCHHHH
Confidence 011 14455554 2233333333221 235677899999999998 66667788888988766
Q ss_pred HHHHHHHHHhCCCCCCCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcc
Q psy6807 200 DIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYL 264 (395)
Q Consensus 200 ~~y~~~~~~~~~~l~~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l 264 (395)
. ++...+ ..-..||++|||++|++++++||++|||+.|. +..+|++++.+.|.+.+.
T Consensus 155 ~---~L~~~~-~~~~~PDltI~Ld~~pe~~l~RI~~RgR~~Er----ie~~yl~rvr~~Y~~l~~ 211 (341)
T 1osn_A 155 P---GLLFTL-PAEPPGTNLVVCTVSLPSHLSRVSKRARPGET----VNLPFVMVLRNVYIMLIN 211 (341)
T ss_dssp H---HHHTTC-CCCCSCCEEEEEECCHHHHHHHCC------CC----CCHHHHHHHHHHHHHHHH
T ss_pred H---HHHHhh-hcCCCCCeEEEEeCCHHHHHHHHHhhCCCccc----CCHHHHHHHHHHHHHHHH
Confidence 4 333322 33357999999999999999999999987775 568999999999988654
No 25
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.64 E-value=4.3e-18 Score=155.12 Aligned_cols=199 Identities=14% Similarity=0.090 Sum_probs=121.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCcc-ccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDW-RSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQI 148 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~-~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql 148 (395)
++|+|+|++||||||+++.|++.++...+....+..+- .+.+. ... .+....+.+...+. .....++
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~--~~~~~~~~~--------~r~~~~~~~~~~~~--~~~~~~~ 68 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPR--YGQSVAADI--------AAEALHGEHGDLAS--SVYAMAT 68 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSE--EEEEEEEEE--------HHHHEEEEEEEEEE--EHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC--CCCcchhhH--------HHHHHcccccccCC--CHhHHHH
Confidence 48999999999999999999999975433211111000 01011 000 01111112221111 2345555
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhC---CCCCCCCEEEEEECC
Q psy6807 149 RMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTL---PPLFKPHLVIYLDIP 225 (395)
Q Consensus 149 ~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~---~~l~~PdlvIyLd~p 225 (395)
.+...|+.+ .+.+...+..|..||+||+++|+++|+.+... +.+...|.++..... ..++.|+++|||++|
T Consensus 69 ~~~~~r~~~-~~~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~ 142 (214)
T 1gtv_A 69 LFALDRAGA-VHTIQGLCRGYDVVILDRYVASNAAYSAARLH-----ENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVS 142 (214)
T ss_dssp HHHHHHHEE-HHHHHHEEEEEEEEEEEEEEHHHHHHHHHHEE-----EEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEE
T ss_pred HHHHHHhhh-HHHHHHHhhCCCEEEECCCcccchhhhhcccC-----ccccHHHHHHHHhcccccccCCCCCEEEEEeCC
Confidence 566666654 44556667788999999999999998865321 111123344433321 133579999999999
Q ss_pred hHHHHHHHhhcCCc--------cccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 226 VSKVKENVKKRNNP--------WEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 226 ~e~~~eRI~~Rgr~--------~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
++++.+|+.+|+.. .|. ..+|++.+...|.+..... ...+++++| +.+++++|.++|...+
T Consensus 143 ~~~~~~R~~~R~~~~~~~~~d~~e~-----~~~~~~~~~~~~~~~~~~~--~~~~~~vId--~~~~~~~v~~~i~~~~ 211 (214)
T 1gtv_A 143 AELAGERSRGRAQRDPGRARDNYER-----DAELQQRTGAVYAELAAQG--WGGRWLVVG--ADVDPGRLAATLAPPD 211 (214)
T ss_dssp HHHHHHHHHHHHHEBBEEEEEEEEE-----EHHHHHHHHHHHHHHHHEE--EEEEEEEEE--EEEBHHHHHHHHC---
T ss_pred HHHHHHHHHcccccccccccccccc-----cHHHHHHHHHHHHHHHHhC--CCCCEEEEe--CCCCHHHHHHHhcCCC
Confidence 99999999998642 221 3689999999887754211 014678889 6789999999997654
No 26
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.59 E-value=1.5e-14 Score=128.95 Aligned_cols=186 Identities=12% Similarity=0.147 Sum_probs=97.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
++++|+|+|++||||||+|+.|++++|..++. .|..+.. .......+... ...++.+.. ......
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~---~d~~~~~~~~~~~~~~~~~----------~~~~~~~g~-~~~~~~ 67 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLS---AGELLRDERKNPDSQYGEL----------IEKYIKEGK-IVPVEI 67 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE---HHHHHHHHHHCTTSTTHHH----------HHHHHHTTC-CCCHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEe---HHHHHHHHHhccCChHHHH----------HHHHHHCCC-cCCHHH
Confidence 46899999999999999999999999988763 3322211 00000000000 011111111 001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
....+..++.+ .+ ..+..|..||+|+++.+...+. .+.... .....|+++|||++|+
T Consensus 68 ~~~~l~~~~~~---~~-~~~~~~~~vi~dg~~~~~~~~~------------------~~~~~~-~~~~~~~~~i~l~~~~ 124 (196)
T 1tev_A 68 TISLLKREMDQ---TM-AANAQKNKFLIDGFPRNQDNLQ------------------GWNKTM-DGKADVSFVLFFDCNN 124 (196)
T ss_dssp HHHHHHHHHHH---HH-HHCTTCCEEEEESCCCSHHHHH------------------HHHHHH-TTTCEEEEEEEEECCH
T ss_pred HHHHHHHHHHh---hh-ccccCCCeEEEeCCCCCHHHHH------------------HHHHHh-cccCCCCEEEEEECCH
Confidence 11111111111 11 2234578999998886643221 111111 2234578999999999
Q ss_pred HHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhccc---ccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 227 SKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLP---QISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 227 e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~---~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
+++.+|+.+|+..... +..+.+.++.....|.+...| ...+.++++++| +.+++++|.++|..+
T Consensus 125 e~~~~R~~~R~~~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id--~~~~~~~v~~~i~~~ 191 (196)
T 1tev_A 125 EICIERCLERGKSSGR--SDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKID--ASKSVDEVFDEVVQI 191 (196)
T ss_dssp HHHHHHHHHHHHTSSC--CSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEE--TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCCC--CCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEE--CCCCHHHHHHHHHHH
Confidence 9999999988521100 001234333333333332221 111235677889 558999999999764
No 27
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.57 E-value=4.9e-15 Score=132.40 Aligned_cols=177 Identities=16% Similarity=0.124 Sum_probs=96.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
.+++|+|+|++||||||+++.|++.+|..++. .|.. + ..+ ...+..++ ..+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~---~D~~--------~---~~~---------~~~~~~~~---~~~~~~ 57 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLS---KDAF--------K---EVM---------FDGLGWSD---REWSRR 57 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE---HHHH--------H---HHH---------HHHHCCCS---HHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEec---HHHH--------H---HHH---------HHhcCccc---hHHHHH
Confidence 46899999999999999999999999887663 2210 0 101 01111111 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECChH
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVS 227 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~e 227 (395)
+. ...+....+.+...++.|.+||+|++. +... ....+.++... ...|+++|||++|++
T Consensus 58 ~~--~~~~~~~~~~~~~~l~~g~~vi~d~~~-~~~~--------------~~~~~~~l~~~----~~~~~~~v~l~~~~e 116 (193)
T 2rhm_A 58 VG--ATAIMMLYHTAATILQSGQSLIMESNF-RVDL--------------DTERMQNLHTI----APFTPIQIRCVASGD 116 (193)
T ss_dssp HH--HHHHHHHHHHHHHHHHTTCCEEEEECC-CHHH--------------HHHHHHHHHHH----SCCEEEEEEEECCHH
T ss_pred hh--HHHHHHHHHHHHHHHhCCCeEEEecCC-CCHH--------------HHHHHHHHHHh----cCCeEEEEEEeCCHH
Confidence 11 112333333445567789999999876 2110 01112222221 235789999999999
Q ss_pred HHHHHHhhcCCccccCCCCCcHHHHH--HHHHHHHhhcccccCCCCcEEEEeCCCC--CChhHHHHHHHH
Q psy6807 228 KVKENVKKRNNPWEVNSPIFNDKYLH--EIEDLYKNNYLPQISDSSELLVYDWSDG--GDPEVVVEDIER 293 (395)
Q Consensus 228 ~~~eRI~~Rgr~~E~~~~~v~~~yl~--~l~~~Yk~~~l~~~~~~~~vli~D~t~~--~~~e~V~edIe~ 293 (395)
++.+|+.+|++..+........+|+. .+...|+. +.+. .....++++|++.. .+++++++.|..
T Consensus 117 ~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~Idt~~~~~~~~~~i~~~i~~ 184 (193)
T 2rhm_A 117 VLVERILSRIAQGARHPGHCDDRSPADLELVRSRGD-IPPL-PLGGPLLTVDTTFPEQIDMNAIVQWVRQ 184 (193)
T ss_dssp HHHHHHHHHHHTTCC--------CHHHHHHHHHSCC-CCCC-CCCSCEEEEECSSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCcccccCccCcchhhHHHHhc-CCCc-cCCCCEEEEeCCCCcccCHHHHHHHHHH
Confidence 99999998863211100001234555 34455544 3332 12246788895442 355667666654
No 28
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.52 E-value=5.4e-14 Score=125.93 Aligned_cols=175 Identities=17% Similarity=0.252 Sum_probs=97.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc---CCCccccchhhhhhhhhhhhhhhhhcCCCCCccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR---GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHT 143 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~---~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~ 143 (395)
.++++|+|+|++||||||+++.||+.+|..++. .|..+.. .|... ... ...++.+.+. .
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~---~d~~~~~~~~~~~~~---~~~----------i~~~~~~g~~--~ 68 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS---TGDLLRSEVSSGSAR---GKK----------LSEIMEKGQL--V 68 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEE---HHHHHHHHHHTTCHH---HHH----------HHHHHHTTCC--C
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc---HHHHHHHHHHcCChH---HHH----------HHHHHHcCCc--C
Confidence 457899999999999999999999999988773 3322211 11000 000 0111111110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEE
Q psy6807 144 IAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLD 223 (395)
Q Consensus 144 ~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd 223 (395)
+..... ....+.+...+..|.+||+|+++.+- .....+.. . +..|+++|||+
T Consensus 69 ~~~~~~------~~~~~~i~~~~~~~~~vi~d~~~~~~------------------~~~~~~~~-~---~~~~~~vi~l~ 120 (196)
T 2c95_A 69 PLETVL------DMLRDAMVAKVNTSKGFLIDGYPREV------------------QQGEEFER-R---IGQPTLLLYVD 120 (196)
T ss_dssp CHHHHH------HHHHHHHHHHTTTCSCEEEESCCCSH------------------HHHHHHHH-H---TCCCSEEEEEE
T ss_pred CHHHHH------HHHHHHHHhccccCCcEEEeCCCCCH------------------HHHHHHHH-h---cCCCCEEEEEE
Confidence 000010 11123344455688999999765321 00001111 1 24689999999
Q ss_pred CChHHHHHHHhhcCCc---cccCCCCCcHHHHHHHHHHHHhhcccc---cCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 224 IPVSKVKENVKKRNNP---WEVNSPIFNDKYLHEIEDLYKNNYLPQ---ISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 224 ~p~e~~~eRI~~Rgr~---~E~~~~~v~~~yl~~l~~~Yk~~~l~~---~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
+|++++.+|+.+|+.. .+.. ...+.+++...+.+. .+. ......++++| +.++++++.++|..+
T Consensus 121 ~~~e~~~~R~~~R~~~~~~~~~~----~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~Id--~~~~~e~v~~~i~~~ 190 (196)
T 2c95_A 121 AGPETMTQRLLKRGETSGRVDDN----EETIKKRLETYYKAT-EPVIAFYEKRGIVRKVN--AEGSVDSVFSQVCTH 190 (196)
T ss_dssp CCHHHHHHHHHHHHTSSSCGGGS----HHHHHHHHHHHHHHT-HHHHHHHHHHTCEEEEE--CCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHccCCcCCCCCCC----HHHHHHHHHHHHHHH-HHHHHHHHhcCcEEEEE--CCCCHHHHHHHHHHH
Confidence 9999999999988631 1111 234445555444332 110 01112366788 568999999999764
No 29
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.51 E-value=2.9e-13 Score=117.87 Aligned_cols=168 Identities=13% Similarity=0.118 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIR 149 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ql~ 149 (395)
++|+|+|++||||||+++.| +++|..++. .+..+.. .+.. .. .+.. .......
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~---~~~~~~~----------~~~~--------~~--~~~~---~~~~~~~ 54 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIV---MSDVVRK----------RYSI--------EA--KPGE---RLMDFAK 54 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEE---HHHHHHH----------HHHH--------HC-----C---CHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEE---HhHHHHH----------HHHh--------cC--CChh---HHHHHHH
Confidence 58999999999999999999 889988773 2321111 0000 00 0000 0000000
Q ss_pred HHHHH--HHHHHHHHHHHH--hcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECC
Q psy6807 150 MLQLR--FSVYVDALAHML--STGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIP 225 (395)
Q Consensus 150 ~~~~R--~~q~~~al~~~l--~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p 225 (395)
.+..+ .......+...+ ..+..||+|.. ........+.++. ..|+++|||++|
T Consensus 55 ~~~~~~~~~~~~~~~~~~l~~~~~~~vi~dg~----------------~~~~~~~~l~~~~-------~~~~~~i~l~~~ 111 (179)
T 3lw7_A 55 RLREIYGDGVVARLCVEELGTSNHDLVVFDGV----------------RSLAEVEEFKRLL-------GDSVYIVAVHSP 111 (179)
T ss_dssp HHHHHHCTTHHHHHHHHHHCSCCCSCEEEECC----------------CCHHHHHHHHHHH-------CSCEEEEEEECC
T ss_pred HHHhhCCHHHHHHHHHHHHHhcCCCeEEEeCC----------------CCHHHHHHHHHHh-------CCCcEEEEEECC
Confidence 00000 001112223334 57888999953 2222222222222 157899999999
Q ss_pred hHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 226 VSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 226 ~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++++.+|+.+|+++.... -..++.+.+... .++........++++ +| +.++++++.++|..+
T Consensus 112 ~~~~~~R~~~R~~~~~~~---~~~~~~~r~~~~-~~~~~~~~~~~ad~v-Id--~~~~~~~~~~~i~~~ 173 (179)
T 3lw7_A 112 PKIRYKRMIERLRSDDSK---EISELIRRDREE-LKLGIGEVIAMADYI-IT--NDSNYEEFKRRCEEV 173 (179)
T ss_dssp HHHHHHHHHTCC----CC---CHHHHHHHHHHH-HHHTHHHHHHTCSEE-EE--CCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCcc---hHHHHHHHHHhh-hccChHhHHHhCCEE-EE--CCCCHHHHHHHHHHH
Confidence 999999999998753211 123343333221 111111112245654 56 556999999999775
No 30
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.51 E-value=7.2e-14 Score=128.43 Aligned_cols=183 Identities=15% Similarity=0.124 Sum_probs=96.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc---CCCccccchhhhhhhhhhhhhhhhhcCCCCCccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR---GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHT 143 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~---~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~ 143 (395)
+.+++|+|+|++||||||+++.||++++..++ +.|..+.. .+.... .. ...++.+.. ...
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i---~~d~~~~~~~~~~~~~g-------~~------i~~~~~~g~-~~~ 64 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHL---ATGDMLRSQIAKGTQLG-------LE------AKKIMDQGG-LVS 64 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEE---EHHHHHHHHHHTTCHHH-------HH------HHHHHHTTC-CCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEE---ehhHHHHHHHHcCChHH-------HH------HHHHHHCCC-cCC
Confidence 35789999999999999999999999998877 33332211 110000 00 011111110 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEE
Q psy6807 144 IAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLD 223 (395)
Q Consensus 144 ~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd 223 (395)
-.....++ .+.+.+....|.++|+|+++.+ .. ....+.++.... -..|+++|||+
T Consensus 65 ~~~~~~~l-------~~~l~~~~~~~~~~i~dg~~~~-~~--------------~~~~l~~~l~~~---~~~~d~vi~L~ 119 (220)
T 1aky_A 65 DDIMVNMI-------KDELTNNPACKNGFILDGFPRT-IP--------------QAEKLDQMLKEQ---GTPLEKAIELK 119 (220)
T ss_dssp HHHHHHHH-------HHHHHHCGGGGSCEEEESCCCS-HH--------------HHHHHHHHHHHH---TCCCCEEEEEE
T ss_pred HHHHHHHH-------HHHHHhccccCCCeEEeCCCCC-HH--------------HHHHHHHHHHhc---CCCCCEEEEEE
Confidence 01111111 1222222346789999986532 11 011111221111 13689999999
Q ss_pred CChHHHHHHHhhcCC--------------------------ccccCCCCCcHHHHHHHHHHHHhhccc---ccCCCCcEE
Q psy6807 224 IPVSKVKENVKKRNN--------------------------PWEVNSPIFNDKYLHEIEDLYKNNYLP---QISDSSELL 274 (395)
Q Consensus 224 ~p~e~~~eRI~~Rgr--------------------------~~E~~~~~v~~~yl~~l~~~Yk~~~l~---~~~~~~~vl 274 (395)
+|++++.+|+..|+. +.......-...+.+++. .|.+...+ ...+...++
T Consensus 120 ~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l~~r~dd~~~~~~~rl~-~~~~~~~~l~~~y~~~~~~~ 198 (220)
T 1aky_A 120 VDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLA-AYHAQTEPIVDFYKKTGIWA 198 (220)
T ss_dssp CCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHH-HHHHHTTHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHhCCCccCccCCccccccCCCcccccccccccccccCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhCCCEE
Confidence 999999999998842 111110001123444553 34433222 111123578
Q ss_pred EEeCCCCCChhHHHHHHHHh
Q psy6807 275 VYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 275 i~D~t~~~~~e~V~edIe~l 294 (395)
++| +.+++++|.++|...
T Consensus 199 ~id--~~~~~~~v~~~i~~~ 216 (220)
T 1aky_A 199 GVD--ASQPPATVWADILNK 216 (220)
T ss_dssp EEE--TTSCHHHHHHHHHHH
T ss_pred EEE--CCCCHHHHHHHHHHH
Confidence 888 678999999999764
No 31
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.51 E-value=1.3e-13 Score=124.96 Aligned_cols=163 Identities=15% Similarity=0.143 Sum_probs=92.2
Q ss_pred hccCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccH
Q psy6807 65 FNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTI 144 (395)
Q Consensus 65 ~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~ 144 (395)
+...+++|+|+|++||||||+++.|++.+|..++.. |..+. +........+..+.+.
T Consensus 14 m~~~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~---d~~~~--------------~~~~~~~~~g~~~~~~------ 70 (202)
T 3t61_A 14 VRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG---DALHP--------------PENIRKMSEGIPLTDD------ 70 (202)
T ss_dssp -CCCSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG---GGGCC--------------HHHHHHHHHTCCCCHH------
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC---CcCcc--------------hhhHHHHhcCCCCCch------
Confidence 444577999999999999999999999999877632 22110 0000000001111110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEEC
Q psy6807 145 AFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDI 224 (395)
Q Consensus 145 ~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~ 224 (395)
.. ......+...+..|..||+|..... .. +.+.+.... ..|+++|||++
T Consensus 71 ~~---------~~~~~~l~~~~~~~~~vivd~~~~~---------------~~----~~~~l~~~~---~~~~~vi~l~~ 119 (202)
T 3t61_A 71 DR---------WPWLAAIGERLASREPVVVSCSALK---------------RS----YRDKLRESA---PGGLAFVFLHG 119 (202)
T ss_dssp HH---------HHHHHHHHHHHTSSSCCEEECCCCS---------------HH----HHHHHHHTS---TTCCEEEEEEC
T ss_pred hh---------HHHHHHHHHHHhcCCCEEEECCCCC---------------HH----HHHHHHHhc---CCCeEEEEEeC
Confidence 00 0111233344578889999965421 11 112222211 35689999999
Q ss_pred ChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 225 PVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 225 p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
|++++.+|+.+|+.... +.+.++ ..+... .+. ......+++| +++++++++++|..+
T Consensus 120 ~~e~~~~Rl~~R~~~~~------~~~~~~---~~~~~~-~~~-~~~~~~~~Id--~~~~~~e~~~~I~~~ 176 (202)
T 3t61_A 120 SESVLAERMHHRTGHFM------PSSLLQ---TQLETL-EDP-RGEVRTVAVD--VAQPLAEIVREALAG 176 (202)
T ss_dssp CHHHHHHHHHHHHSSCC------CHHHHH---HHHHHC-CCC-TTSTTEEEEE--SSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCC------CHHHHH---HHHHhc-CCC-CCCCCeEEEe--CCCCHHHHHHHHHHH
Confidence 99999999999874321 233333 333322 221 1223467788 448999999888653
No 32
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.50 E-value=1.2e-13 Score=122.95 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=51.9
Q ss_pred CCCEEEEEECChHHHHHH-Hhh--cCC-ccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEE-eCCCCCChhHHHH
Q psy6807 215 KPHLVIYLDIPVSKVKEN-VKK--RNN-PWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVY-DWSDGGDPEVVVE 289 (395)
Q Consensus 215 ~PdlvIyLd~p~e~~~eR-I~~--Rgr-~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~-D~t~~~~~e~V~e 289 (395)
.|+++|||++|++++++| +.. |++ +.+.. -..++.+.+...|.+..... ...+++++ | +.++++++++
T Consensus 115 ~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~I~d--~~~~~e~v~~ 187 (194)
T 1nks_A 115 NPSVIFLLEADPKIILSRQKRDTTRNRNDYSDE---SVILETINFARYAATASAVL--AGSTVKVIVN--VEGDPSIAAN 187 (194)
T ss_dssp CCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSH---HHHHHHHHHHHHHHHHHHHH--HTCEEEEEEC--CSSCHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhcccCCCCccCH---HHHHHHHHHHHHHHHHHHHh--cCCcEEEEeC--CCCCHHHHHH
Confidence 489999999999999866 778 876 43221 12466677888887754321 12467888 7 6689999999
Q ss_pred HHHHh
Q psy6807 290 DIERI 294 (395)
Q Consensus 290 dIe~l 294 (395)
+|..+
T Consensus 188 ~I~~~ 192 (194)
T 1nks_A 188 EIIRS 192 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99763
No 33
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.50 E-value=1e-13 Score=125.46 Aligned_cols=178 Identities=17% Similarity=0.229 Sum_probs=95.5
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc---CCCccccchhhhhhhhhhhhhhhhhcCCCCCcc
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR---GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFH 142 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~---~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~ 142 (395)
...+++|+|+|++||||||+|+.|++.+|..++ +.|..+.. .+.... .. ...++.+.. ..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i---~~d~~~r~~~~~~~~~g---~~----------i~~~~~~g~-~~ 79 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQI---STGELFRRNIEEGTKLG---VE----------AKRYLDAGD-LV 79 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEE---EHHHHHHHHHHTTCHHH---HH----------HHHHHHHTC-CC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEE---ehhHHHHHHHHcCChHH---HH----------HHHHHHcCC-cc
Confidence 345689999999999999999999999998776 33321111 000000 00 001111100 00
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEE
Q psy6807 143 TIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYL 222 (395)
Q Consensus 143 ~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyL 222 (395)
.......++. +.+.+ ...|.+||+|.++.+- .....+.++... .-..|+++|||
T Consensus 80 ~~~~~~~~~~-------~~~~~-~~~~~~vIldg~~~~~---------------~~~~~l~~~l~~---~~~~~~~vi~l 133 (201)
T 2cdn_A 80 PSDLTNELVD-------DRLNN-PDAANGFILDGYPRSV---------------EQAKALHEMLER---RGTDIDAVLEF 133 (201)
T ss_dssp CHHHHHHHHH-------HHTTS-GGGTTCEEEESCCCSH---------------HHHHHHHHHHHH---TTCCCCEEEEE
T ss_pred cHHHHHHHHH-------HHHhc-ccCCCeEEEECCCCCH---------------HHHHHHHHHHHh---cCCCCCEEEEE
Confidence 0001011111 11212 2467889999765321 011112222221 11358999999
Q ss_pred ECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCC-CCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 223 DIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISD-SSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 223 d~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~-~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++|++++.+|+.+|+++.+ +.+.++.....|.+...+.... ...++++| +.++++++.++|..+
T Consensus 134 ~~~~e~~~~Rl~~R~r~~~------~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id--~~~~~eev~~~I~~~ 198 (201)
T 2cdn_A 134 RVSEEVLLERLKGRGRADD------TDDVILNRMKVYRDETAPLLEYYRDQLKTVD--AVGTMDEVFARALRA 198 (201)
T ss_dssp ECCHHHHHHHHHHHCCTTC------SHHHHHHHHHHHHHHTTTHHHHTTTTEEEEE--CCSCHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHcCCCCCC------CHHHHHHHHHHHHHhhHHHHHHhcCcEEEEe--CCCCHHHHHHHHHHH
Confidence 9999999999999986532 1333333323333222111000 23567888 578999999999764
No 34
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.50 E-value=1.2e-13 Score=127.06 Aligned_cols=176 Identities=16% Similarity=0.149 Sum_probs=95.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc---CCCc-cccchhhhhhhhhhhhhhhhhcCCCCCccc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR---GDFD-WRSLDAEWSNENLKSYDEKTFCKDPKHFHT 143 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~---~g~d-~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~ 143 (395)
+++.|+|+|++||||||+|+.||+++|..++ +.|..+.. .+.. ...+ ..++.+.. ...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i---~~d~li~~~~~~~t~~g~~i--------------~~~~~~g~-~~~ 65 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHL---STGDMLREAIKNGTKIGLEA--------------KSIIESGN-FVG 65 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEE---EHHHHHHHHHHTC--CCHHH--------------HHHHHHTC-CCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEE---ehhHHHHHHHHcCCHHHHHH--------------HHHHHCCC-cCC
Confidence 4678999999999999999999999998887 33332211 1000 0000 00010000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEE
Q psy6807 144 IAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLD 223 (395)
Q Consensus 144 ~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd 223 (395)
-......+ .+++.. +..|.+||+|.++.+- .- .....++.... -..|+++|||+
T Consensus 66 ~~~~~~~i-------~~~l~~-~~~~~~~i~dg~~~~~-~~--------------~~~l~~~l~~~---~~~~d~vi~L~ 119 (217)
T 3be4_A 66 DEIVLGLV-------KEKFDL-GVCVNGFVLDGFPRTI-PQ--------------AEGLAKILSEI---GDSLTSVIYFE 119 (217)
T ss_dssp HHHHHHHH-------HHHHHT-TTTTTCEEEESCCCSH-HH--------------HHHHHHHHHHH---TCCCCEEEEEE
T ss_pred HHHHHHHH-------HHHHhc-cccCCCEEEeCCCCCH-HH--------------HHHHHHHHHhc---CCCCCEEEEEE
Confidence 00000011 112211 3468899999765331 10 11111111111 13689999999
Q ss_pred CChHHHHHHHhhcCC--------------------------ccccCCCCCcHHHHHHHHHHHHhh---cccc---cCCCC
Q psy6807 224 IPVSKVKENVKKRNN--------------------------PWEVNSPIFNDKYLHEIEDLYKNN---YLPQ---ISDSS 271 (395)
Q Consensus 224 ~p~e~~~eRI~~Rgr--------------------------~~E~~~~~v~~~yl~~l~~~Yk~~---~l~~---~~~~~ 271 (395)
+|++++.+|+..|+. +.+.. ..++.+.+.+.|..+ ..+. ..+..
T Consensus 120 ~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~~----~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~ 195 (217)
T 3be4_A 120 IDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWR----DDDNAEAVKVRLDVFHKQTAPLVKFYEDLG 195 (217)
T ss_dssp CCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCC----GGGSHHHHHHHHHHHHHHTTHHHHHHHTTT
T ss_pred CCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccccccC----CCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999998852 22221 123444444444322 1111 12234
Q ss_pred cEEEEeCCCCCChhHHHHHHHH
Q psy6807 272 ELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 272 ~vli~D~t~~~~~e~V~edIe~ 293 (395)
.++++| +.+++++|.++|..
T Consensus 196 ~~~~id--~~~~~~~v~~~i~~ 215 (217)
T 3be4_A 196 ILKRVN--AKLPPKEVTEQIKK 215 (217)
T ss_dssp CEEEEE--TTSCHHHHHHHHHH
T ss_pred CEEEEE--CCCCHHHHHHHHHh
Confidence 678889 67899999999975
No 35
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.50 E-value=4.5e-14 Score=126.75 Aligned_cols=177 Identities=16% Similarity=0.210 Sum_probs=96.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-C--CCccccchhhhhhhhhhhhhhhhhcCCCCCcccHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-G--DFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIA 145 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~--g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~ 145 (395)
+++|+|+|++||||||+|+.|++++|..++ +.|..+.. . +... +. ....++.+.... . .
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i---~~d~~~~~~~~~~~~~------------~~-~i~~~~~~g~~~-~-~ 73 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL---STGELLREELASESER------------SK-LIRDIMERGDLV-P-S 73 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE---EHHHHHHHHHHHTCHH------------HH-HHHHHHHTTCCC-C-H
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE---cHHHHHHHHHHhCCHH------------HH-HHHHHHHcCCcC-C-H
Confidence 579999999999999999999999998777 33332211 0 0000 00 001111111100 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECC
Q psy6807 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIP 225 (395)
Q Consensus 146 ~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p 225 (395)
.... ....+.+...+..|.+||+|+++.+.-- .. .+.. .+..|+++|||++|
T Consensus 74 ~~~~------~~~~~~i~~~~~~~~~vi~dg~~~~~~~---------------~~---~l~~----~~~~~~~~i~l~~~ 125 (199)
T 2bwj_A 74 GIVL------ELLKEAMVASLGDTRGFLIDGYPREVKQ---------------GE---EFGR----RIGDPQLVICMDCS 125 (199)
T ss_dssp HHHH------HHHHHHHHHHTTSCSCEEEETCCSSHHH---------------HH---HHHH----HTCCCSEEEEEECC
T ss_pred HHHH------HHHHHHHhcccccCccEEEeCCCCCHHH---------------HH---HHHH----hcCCCCEEEEEECC
Confidence 0010 0111233344457889999987754210 00 1111 12368999999999
Q ss_pred hHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcc--cccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 226 VSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYL--PQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 226 ~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l--~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++++.+|+.+|+...... .....++.+++...|.+... +.......++++| +.++++++.++|..+
T Consensus 126 ~~~~~~R~~~R~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id--~~~~~e~v~~~i~~~ 193 (199)
T 2bwj_A 126 ADTMTNRLLQMSRSSLPV-DDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKIN--AEGTPEDVFLQLCTA 193 (199)
T ss_dssp HHHHHHHHHHTCCCCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEE--TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE--CCCCHHHHHHHHHHH
Confidence 999999999997521110 00013344444443332210 0011123457888 678999999999764
No 36
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.48 E-value=6.6e-13 Score=123.13 Aligned_cols=178 Identities=14% Similarity=0.203 Sum_probs=97.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc---CCCccccchhhhhhhhhhhhhhhhhcCCCCCccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR---GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHT 143 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~---~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~ 143 (395)
+++++|+|.|+|||||||+|+.|++++|+.++... +.+.. .+.. +|-........+... |.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstG---dllR~~i~~~t~-------lg~~~~~~~~~G~lV--pd---- 90 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSG---DLLRAEVQSGSP-------KGKELKAMMERGELV--PL---- 90 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHH---HHHHHHHTTCCH-------HHHHHHHHHHHTCCC--CH----
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHH---HHHHHHHHcCCc-------hHHHHHHHHhcCCCC--CH----
Confidence 46789999999999999999999999999988432 21111 1100 000000000011111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEE
Q psy6807 144 IAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLD 223 (395)
Q Consensus 144 ~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd 223 (395)
..-..++. +++.......+++|+|.+|-+-- ....+.. .+..|+++|+|+
T Consensus 91 -e~~~~lv~-------~~l~~~~~~~~g~ilDGfPRt~~------------------Qa~~l~~----~~~~~~~vi~l~ 140 (217)
T 3umf_A 91 -EVVLALLK-------EAMIKLVDKNCHFLIDGYPRELD------------------QGIKFEK----EVCPCLCVINFD 140 (217)
T ss_dssp -HHHHHHHH-------HHHHHHTTTCSEEEEETBCSSHH------------------HHHHHHH----HTCCCSEEEEEE
T ss_pred -HHHHHHHH-------HHHhhccccccCcccccCCCcHH------------------HHHHHHH----hCCccCEEEecc
Confidence 11111222 23333345677899998874311 1111111 123689999999
Q ss_pred CChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccc---cCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 224 IPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQ---ISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 224 ~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~---~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
+|.+++.+|+..|....-.. .=+.+.++.--+.|++...|. +.+...++.+| +.+++++|.++|...
T Consensus 141 v~~e~~~~Rl~~R~~~~~R~--DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Id--g~~~~eeV~~~I~~~ 210 (217)
T 3umf_A 141 VSEEVMRKRLLKRAETSNRV--DDNEETIVKRFRTFNELTKPVIEHYKQQNKVITID--ASGTVDAIFDKVNHE 210 (217)
T ss_dssp CCHHHHHHHHSCC------C--HHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEE--TTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcccccCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE--CCCCHHHHHHHHHHH
Confidence 99999999999985311100 001222222223344433221 12345688899 778999999999773
No 37
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.47 E-value=2.1e-13 Score=125.51 Aligned_cols=179 Identities=16% Similarity=0.206 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc---CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR---GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~---~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
|+|+|.|+|||||||+|+.||+++|+.++.. .+.+.+ .+.. +|.........+... |. ..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~ist---GdllR~~i~~~t~-------lg~~~~~~~~~G~lv--pd-----~i 63 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHIST---GDILREAVQKGTP-------LGKKAKEYMERGELV--PD-----DL 63 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEH---HHHHHHHHHHTCH-------HHHHHHHHHHHTCCC--CH-----HH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcH---HHHHHHHHHhcCh-------hhhhHHHHHhcCCcC--CH-----HH
Confidence 5799999999999999999999999999842 221111 0000 000000000011110 11 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
..+.+...+....++|+|.+|-+-- ..+.+.+.... .-..++.+|+|++|.
T Consensus 64 -----------v~~lv~~~l~~~~~~ilDGfPRt~~---------------Qa~~l~~~l~~---~~~~~~~vi~l~v~~ 114 (206)
T 3sr0_A 64 -----------IIALIEEVFPKHGNVIFDGFPRTVK---------------QAEALDEMLEK---KGLKVDHVLLFEVPD 114 (206)
T ss_dssp -----------HHHHHHHHCCSSSCEEEESCCCSHH---------------HHHHHHHHHHH---TTCCCCEEEEEECCH
T ss_pred -----------HHHHHHHhhccCCceEecCCchhHH---------------HHHHHHhhHHH---hccccceeeecCCCH
Confidence 1122333456677899998874421 11111122221 123689999999999
Q ss_pred HHHHHHHhhcCCccc------------------cCCCCCcHHHHHHHHHHHHhhccccc---CCCCcEEEEeCCCCCChh
Q psy6807 227 SKVKENVKKRNNPWE------------------VNSPIFNDKYLHEIEDLYKNNYLPQI---SDSSELLVYDWSDGGDPE 285 (395)
Q Consensus 227 e~~~eRI~~Rgr~~E------------------~~~~~v~~~yl~~l~~~Yk~~~l~~~---~~~~~vli~D~t~~~~~e 285 (395)
+++.+|+..|..... .....=+.+-++.--+.|++...|.. .+...+..+| +.++++
T Consensus 115 e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Id--g~~~~~ 192 (206)
T 3sr0_A 115 EVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIID--ASKPVE 192 (206)
T ss_dssp HHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEE--TTSCHH
T ss_pred HHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE--CCCCHH
Confidence 999999998831000 00000113333333334554433322 2345678889 778999
Q ss_pred HHHHHHHHhhh
Q psy6807 286 VVVEDIERIDF 296 (395)
Q Consensus 286 ~V~edIe~l~f 296 (395)
+|.++|..+--
T Consensus 193 eV~~~I~~~l~ 203 (206)
T 3sr0_A 193 EVYRQVLEVIG 203 (206)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHc
Confidence 99999987543
No 38
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.47 E-value=5.9e-13 Score=120.36 Aligned_cols=177 Identities=14% Similarity=0.228 Sum_probs=92.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc----CCCccccchhhhhhhhhhhhhhhhhcCCCCCcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR----GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFH 142 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~----~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~ 142 (395)
.++++|+|+|++||||||+++.|++++|..++. .|..+.. .|.... .. ...++.+.. ..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~---~d~~~~~~~~~~~~~~~---~~----------i~~~~~~g~-~~ 75 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS---AGDLLRAEQGRAGSQYG---EL----------IKNCIKEGQ-IV 75 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEE---HHHHHHHHHHSTTCSCH---HH----------HHHHHHTTC-CC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEe---HHHHHHHHHhccCCHHH---HH----------HHHHHHcCC-cC
Confidence 346899999999999999999999999987773 3322111 111110 00 011111111 00
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEE
Q psy6807 143 TIAFQIRMLQLRFSVYVDALAHMLSTG-QGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIY 221 (395)
Q Consensus 143 ~~~~ql~~~~~R~~q~~~al~~~l~tG-~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIy 221 (395)
.... .+ ....+.+...+++| ..+|+|..+.+ . +.. ..+... +..|+++||
T Consensus 76 ~~~~-~~------~~l~~~i~~~l~~g~~~~i~dg~~~~-~---------------~~~---~~~~~~---~~~~~~~i~ 126 (203)
T 1ukz_A 76 PQEI-TL------ALLRNAISDNVKANKHKFLIDGFPRK-M---------------DQA---ISFERD---IVESKFILF 126 (203)
T ss_dssp CHHH-HH------HHHHHHHHHHHHTTCCEEEEETCCCS-H---------------HHH---HHHHHH---TCCCSEEEE
T ss_pred CHHH-HH------HHHHHHHHhhhccCCCeEEEeCCCCC-H---------------HHH---HHHHHh---cCCCCEEEE
Confidence 0000 11 11112233445667 57888865421 0 000 011111 235899999
Q ss_pred EECChHHHHHHHhhcCCccccCCCCCcHHHHH-HHHHHHHhhcccc---cCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 222 LDIPVSKVKENVKKRNNPWEVNSPIFNDKYLH-EIEDLYKNNYLPQ---ISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 222 Ld~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~-~l~~~Yk~~~l~~---~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
|++|++++.+|+.+|+...... .-+.+.++ ++.. |.+...+. ......++++| +.++++++.++|..+
T Consensus 127 l~~~~e~~~~Rl~~R~~~~~~~--~~~~e~~~~r~~~-~~~~~~~~~~~~~~~~~vi~id--~~~~~e~v~~~i~~~ 198 (203)
T 1ukz_A 127 FDCPEDIMLERLLERGKTSGRS--DDNIESIKKRFNT-FKETSMPVIEYFETKSKVVRVR--CDRSVEDVYKDVQDA 198 (203)
T ss_dssp EECCHHHHHHHHHHHHHHHCCT--TCSHHHHHHHHHH-HHHTTHHHHHHHHTTTCEEEEE--CSSCHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHhccccCCCC--CCCHHHHHHHHHH-HHHhhHHHHHHHHhcCcEEEEE--CCCCHHHHHHHHHHH
Confidence 9999999999998885210000 00122222 2222 22211111 11223466788 669999999999764
No 39
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.45 E-value=1.8e-13 Score=124.99 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+.|+|+|++||||||+|+.|++++|..++
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHI 29 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEe
Confidence 46899999999999999999999998877
No 40
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.45 E-value=1.2e-13 Score=126.35 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
+.|+|+|++||||||+|+.|++++|..++.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHIS 30 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 468999999999999999999999988773
No 41
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.44 E-value=5.1e-13 Score=125.37 Aligned_cols=182 Identities=13% Similarity=0.107 Sum_probs=96.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc---CCCccccchhhhhhhhhhhhhhhhhcCCCCCccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR---GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHT 143 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~---~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~ 143 (395)
..+++|+|+|+|||||||+|+.|++++|..++. .+..... .+... ...+ ...+..+.+. |
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is---~~~~~r~~~~~~~~~---g~~i----~~~~~~g~~~--~----- 89 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLS---TGDLLREAAEKKTEL---GLKI----KNIINEGKLV--D----- 89 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEE---HHHHHHHHTTSSSHH---HHHH----HHHHHTTCCC--C-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEe---cHHHHHHHHhccchH---HHHH----HHHHhcCCCC--c-----
Confidence 467899999999999999999999999988873 2221111 11000 0000 0000111111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEE
Q psy6807 144 IAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLD 223 (395)
Q Consensus 144 ~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd 223 (395)
......+ +.+.+.. ...+.++|+|+++..-. ....+.++... .-..|+.+|+|+
T Consensus 90 ~~~~~~~-------~~~~l~~-~~~~~~~ildg~p~~~~---------------q~~~l~~~l~~---~~~~~d~vi~l~ 143 (243)
T 3tlx_A 90 DQMVLSL-------VDEKLKT-PQCKKGFILDGYPRNVK---------------QAEDLNKLLQK---NQTKLDGVFYFN 143 (243)
T ss_dssp HHHHHHH-------HHHHTTS-GGGSSEEEEESCCCSHH---------------HHHHHHHHHHH---TTCCCCEEEEEE
T ss_pred HHHHHHH-------HHHHHhc-ccccCCEEecCCCCcHH---------------HHHHHHHHHHH---cCCCCceEEEEe
Confidence 0110011 1112211 23488999998664311 11111122211 123589999999
Q ss_pred CChHHHHHHHhhcCCc--------------------------cccCCCCCcHHHHHHHHHHHHhhccccc---CCCCcEE
Q psy6807 224 IPVSKVKENVKKRNNP--------------------------WEVNSPIFNDKYLHEIEDLYKNNYLPQI---SDSSELL 274 (395)
Q Consensus 224 ~p~e~~~eRI~~Rgr~--------------------------~E~~~~~v~~~yl~~l~~~Yk~~~l~~~---~~~~~vl 274 (395)
+|++++.+|+.+|+.. ... ...-+.+.++.-...|++...+.. .+...++
T Consensus 144 ~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~-r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~ 222 (243)
T 3tlx_A 144 VPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQ-REDDNEDVLKKRLTVFKSETSPLISYYKNKNLLI 222 (243)
T ss_dssp CCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBC-CGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccccccC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEE
Confidence 9999999999998621 000 000123333333333433322211 1123577
Q ss_pred EEeCCCCCChhHHHHHHHHh
Q psy6807 275 VYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 275 i~D~t~~~~~e~V~edIe~l 294 (395)
.+| +.+++++|.++|..+
T Consensus 223 ~id--~~~~~~~v~~~i~~~ 240 (243)
T 3tlx_A 223 NLD--ATQPANDLEKKISQH 240 (243)
T ss_dssp EEE--TTSCHHHHHHHHHHH
T ss_pred EEE--CCCCHHHHHHHHHHH
Confidence 888 788999999999764
No 42
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.43 E-value=4.4e-13 Score=124.58 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=29.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
..+++|+|+|++||||||+|+.||++++..++
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i 45 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHL 45 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 35679999999999999999999999998877
No 43
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.43 E-value=6.7e-13 Score=118.01 Aligned_cols=177 Identities=13% Similarity=0.203 Sum_probs=93.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc---CCCc-cccchhhhhhhhhhhhhhhhhcCCCCCcccH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR---GDFD-WRSLDAEWSNENLKSYDEKTFCKDPKHFHTI 144 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~---~g~d-~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~ 144 (395)
+++|+|+|++||||||+++.|++.+|..++. .|..+.. .|.. ...+ ..++.+... ...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~---~d~~~~~~~~~~~~~~~~i--------------~~~~~~g~~-~~~ 67 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS---AGDLLRQEQQSGSKDGEMI--------------ATMIKNGEI-VPS 67 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE---HHHHHHHHHHTTCTTHHHH--------------HHHHHTTCC-CCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee---HHHHHHHHHhcCCHHHHHH--------------HHHHHCCCC-CCH
Confidence 4789999999999999999999999988773 2221111 0100 0000 111111100 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEEC
Q psy6807 145 AFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDI 224 (395)
Q Consensus 145 ~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~ 224 (395)
.. .. ....+++.. ..|.+||+|+++.+.... ..+.+.. .....|+++|||++
T Consensus 68 ~~-~~------~~l~~~i~~--~~~~~vi~d~~~~~~~~~---------------~~~~~~~----~~~~~~~~vi~l~~ 119 (194)
T 1qf9_A 68 IV-TV------KLLKNAIDA--NQGKNFLVDGFPRNEENN---------------NSWEENM----KDFVDTKFVLFFDC 119 (194)
T ss_dssp HH-HH------HHHHHHHHT--STTCCEEEETCCCSHHHH---------------HHHHHHH----TTTCEEEEEEEEEC
T ss_pred HH-HH------HHHHHHHHh--cCCCCEEEeCcCCCHHHH---------------HHHHHHH----hccCCCCEEEEEEC
Confidence 00 00 001111211 167889999876543211 1111111 11125799999999
Q ss_pred ChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhc--ccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 225 PVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNY--LPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 225 p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~--l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
|++++.+|+.+|+...... ..-...+.+++...+++.. .........++++| ++++++++.++|..+
T Consensus 120 ~~e~~~~R~~~R~~~~~r~-~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id--~~~~~~~~~~~i~~~ 188 (194)
T 1qf9_A 120 PEEVMTQRLLKRGESSGRS-DDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIP--ANRDVNEVYNDVENL 188 (194)
T ss_dssp CHHHHHHHHHHHHTTSCCT-TCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEE--CSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccccCCCC-CCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEE--CCCCHHHHHHHHHHH
Confidence 9999999999886421110 0012445555555332211 00011123467888 568999999999764
No 44
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.43 E-value=2.9e-12 Score=113.50 Aligned_cols=179 Identities=16% Similarity=0.046 Sum_probs=86.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
++++|+|+|++||||||+++.|+++++..++..+ +. .|..++ ..+ + .+...|... . ... +
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~--~~----~g~~i~---~~~-~-----~g~~~~~~~-~---~~~-~ 63 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEP--EE----MGQALR---KLT-P-----GFSGDPQEH-P---MWI-P 63 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCT--HH----HHHHHH---HTS-T-----TCCSCGGGS-T---THH-H
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEch--hh----hHHHHH---HhC-c-----cccchhhhh-H---HHH-H
Confidence 4689999999999999999999999998776211 10 111111 111 0 000111111 1 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 148 IRMLQLRFSVYVDALAHMLST-GQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~t-G~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
...+.+...++. |..||+|.+..+.-.+ ..+.+.... .. .+-..|||++|+
T Consensus 64 ---------~~~~~i~~~l~~~g~~vi~d~~~~~~~~~---------------~~~~~~l~~--~~--~~~~~i~l~~~~ 115 (183)
T 2vli_A 64 ---------LMLDALQYASREAAGPLIVPVSISDTARH---------------RRLMSGLKD--RG--LSVHHFTLIAPL 115 (183)
T ss_dssp ---------HHHHHHHHHHHHCSSCEEEEECCCCHHHH---------------HHHHHHHHH--TT--CCCEEEEEECCH
T ss_pred ---------HHHHHHHHHHHhCCCcEEEeeeccCHHHH---------------HHHHHHHHh--cC--CceEEEEEeCCH
Confidence 011122333454 7778888655332111 111122221 11 123569999999
Q ss_pred HHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhhcccccccccc
Q psy6807 227 SKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFDHYDHFSNKM 306 (395)
Q Consensus 227 e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f~~~~~~~~~~ 306 (395)
+++.+|+.+|+... +..+.++.+...+... . .+ + ++| ++..++++++++|...--.....+...-
T Consensus 116 e~~~~R~~~R~~r~------~~~~~~~~~~~~~~~~-----~-~~-~-~Id-~~~~~~~~~~~~I~~~l~~~~~~~~~~~ 180 (183)
T 2vli_A 116 NVVLERLRRDGQPQ------VNVGTVEDRLNELRGE-----Q-FQ-T-HID-TAGLGTQQVAEQIAAQVGLTLAPPPQGA 180 (183)
T ss_dssp HHHHHHHHTC----------CCHHHHHHHHHHHTSG-----G-GC-S-EEE-CTTCCHHHHHHHHHHHHTCCCCCC----
T ss_pred HHHHHHHHhccccc------hhHHHHHHHHHhhccc-----c-cc-e-Eee-CCCCCHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999986311 1234444444444321 1 23 3 778 2347999999999875544333344455
Q ss_pred ccc
Q psy6807 307 REW 309 (395)
Q Consensus 307 ~~w 309 (395)
.+|
T Consensus 181 ~~~ 183 (183)
T 2vli_A 181 LHW 183 (183)
T ss_dssp ---
T ss_pred CCC
Confidence 555
No 45
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.42 E-value=3e-12 Score=116.02 Aligned_cols=164 Identities=16% Similarity=0.159 Sum_probs=90.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
+.+.+|+|+|++||||||+++.|++.+|..++....... +........+..+.++ ..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~-----------------~~~~~~~~~g~~~~~~------~~ 83 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHS-----------------PENIATMQRGIPLTDE------DR 83 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSC-----------------HHHHHHHHTTCCCCHH------HH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEccccccc-----------------HHHHHHHhcCCCCCCc------cc
Confidence 457899999999999999999999999877663221100 0000000001111111 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
.. .+....+.+...+..|..+|+|..... +. +.+.+ ..+..+..+|||++|+
T Consensus 84 ~~-----~~~~~~~~~~~~~~~g~~viid~~~~~---------------~~----~~~~l----~~~~~~~~vv~l~~~~ 135 (200)
T 4eun_A 84 WP-----WLRSLAEWMDARADAGVSTIITCSALK---------------RT----YRDVL----REGPPSVDFLHLDGPA 135 (200)
T ss_dssp HH-----HHHHHHHHHHHHHHTTCCEEEEECCCC---------------HH----HHHHH----TTSSSCCEEEEEECCH
T ss_pred cc-----HHHHHHHHHHHHHhcCCCEEEEchhhh---------------HH----HHHHH----HHhCCceEEEEEeCCH
Confidence 00 111111222334567888998864322 11 11111 2223467899999999
Q ss_pred HHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 227 SKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 227 e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
+++.+|+.+|+...+. .+ .+...+..+- +... ....+++| +++++++++++|...
T Consensus 136 e~l~~Rl~~R~~~~~~------~~---~l~~~~~~~~-~~~~-~~~~~~Id--~~~~~~e~~~~I~~~ 190 (200)
T 4eun_A 136 EVIKGRMSKREGHFMP------AS---LLQSQLATLE-ALEP-DESGIVLD--LRQPPEQLIERALTW 190 (200)
T ss_dssp HHHHHHHTTCSCCSSC------GG---GHHHHHHHCC-CCCT-TSCEEEEE--TTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCC------HH---HHHHHHHHhC-CCCC-CCCeEEEE--CCCCHHHHHHHHHHH
Confidence 9999999999753321 22 2333343321 2111 22466788 456999999999774
No 46
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.41 E-value=1.4e-12 Score=120.65 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
++|+|+|++||||||+++.|++.+|..++
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 47999999999999999999999998776
No 47
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.40 E-value=8.2e-13 Score=117.48 Aligned_cols=171 Identities=15% Similarity=0.172 Sum_probs=89.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc---CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR---GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTI 144 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~---~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~ 144 (395)
.+++|+|+|++||||||+++.|++++|..++. .|..+.. .|... +. ....++.+... ..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~---~d~~~~~~~~~~~~~------------~~-~i~~~~~~g~~--~~ 64 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLS---TGDILRDHVARGTPL------------GE-RVRPIMERGDL--VP 64 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEEC---HHHHHHHHHHTTCHH------------HH-HHHHHHHTTCC--CC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHHcCChH------------HH-HHHHHHHcCCc--CC
Confidence 46899999999999999999999999988773 2221111 00000 00 00111111100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEEC
Q psy6807 145 AFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDI 224 (395)
Q Consensus 145 ~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~ 224 (395)
.... ...+...+.. ++|+|+++.+-. ....+..+.... -..|+++|||++
T Consensus 65 ~~~~----------~~~~~~~l~~--~~i~dg~~~~~~---------------~~~~l~~~l~~~---~~~~~~vi~l~~ 114 (186)
T 3cm0_A 65 DDLI----------LELIREELAE--RVIFDGFPRTLA---------------QAEALDRLLSET---GTRLLGVVLVEV 114 (186)
T ss_dssp HHHH----------HHHHHHHCCS--EEEEESCCCSHH---------------HHHHHHHHHHHT---TEEEEEEEEEEC
T ss_pred HHHH----------HHHHHHHhcC--CEEEeCCCCCHH---------------HHHHHHHHHHhc---CCCCCEEEEEeC
Confidence 0000 0112222333 489997653310 011112222210 124789999999
Q ss_pred ChHHHHHHHhhcC----CccccCCCCCcHHHHHHHHHHHHhhccc---ccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 225 PVSKVKENVKKRN----NPWEVNSPIFNDKYLHEIEDLYKNNYLP---QISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 225 p~e~~~eRI~~Rg----r~~E~~~~~v~~~yl~~l~~~Yk~~~l~---~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
|++++.+|+.+|+ +. +.+ ...+.+++...+.+ ..+ .......++++| +.+++++|.++|..+
T Consensus 115 ~~e~~~~R~~~R~~~~~r~-~~~----~~~~~~r~~~~~~~-~~~l~~~~~~~~~~~~id--~~~~~~~v~~~i~~~ 183 (186)
T 3cm0_A 115 PEEELVRRILRRAELEGRS-DDN----EETVRRRLEVYREK-TEPLVGYYEARGVLKRVD--GLGTPDEVYARIRAA 183 (186)
T ss_dssp CHHHHHHHHHHHHHHHTCS-SCC----HHHHHHHHHHHHHH-HHHHHHHHHHTTCEEEEE--CCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccccCCCC-CCC----HHHHHHHHHHHHHH-HHHHHHHHHhcCcEEEEE--CCCCHHHHHHHHHHH
Confidence 9999999999884 32 211 23333444432222 111 011112367888 668999999999763
No 48
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.40 E-value=2.2e-12 Score=122.09 Aligned_cols=166 Identities=14% Similarity=0.209 Sum_probs=94.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH---hccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE---LDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTI 144 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~---l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~ 144 (395)
++++|+|+|++||||||+|+.|++. +|..++.- +.|. +.. .+ .. |.. .
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~-~~D~-~~~----------~l----------~~-~~~-~----- 53 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL-GSDL-IRE----------SF----------PV-WKE-K----- 53 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE-CTHH-HHT----------TS----------SS-CCG-G-----
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE-CchH-HHH----------HH----------hh-hhH-H-----
Confidence 4689999999999999999999998 45444300 1111 000 00 00 111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEEC
Q psy6807 145 AFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDI 224 (395)
Q Consensus 145 ~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~ 224 (395)
.+..+.... ...+...+.. ..||+|++++.. .....+.++.. ....|+++|||++
T Consensus 54 -~e~~~~~~~----~~~i~~~l~~-~~vIiD~~~~~~---------------~~~~~l~~~a~----~~~~~~~vi~l~~ 108 (260)
T 3a4m_A 54 -YEEFIKKST----YRLIDSALKN-YWVIVDDTNYYN---------------SMRRDLINIAK----KYNKNYAIIYLKA 108 (260)
T ss_dssp -GHHHHHHHH----HHHHHHHHTT-SEEEECSCCCSH---------------HHHHHHHHHHH----HTTCEEEEEEEEC
T ss_pred -HHHHHHHHH----HHHHHHHhhC-CEEEEeCCcccH---------------HHHHHHHHHHH----HcCCCEEEEEEeC
Confidence 000111100 1223334455 889999865432 11112222222 1235799999999
Q ss_pred ChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 225 PVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 225 p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
|++++.+|+.+|+++ ++.+.++.+...|+... +........+++|++...++++|++.|....
T Consensus 109 ~~e~~~~R~~~R~~~-------~~~~~l~~~~~~~e~~~-~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l 171 (260)
T 3a4m_A 109 SLDVLIRRNIERGEK-------IPNEVIKKMYEKFDEPG-KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKS 171 (260)
T ss_dssp CHHHHHHHHHHTTCS-------SCHHHHHHHHHHCCCTT-SSCGGGCCSEEEETTSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-------CCHHHHHHHHHHhcCcc-ccCCCCCCEEEEeCCCCCCHHHHHHHHHhcc
Confidence 999999999999843 34566666655554321 1111023567889665458999999997643
No 49
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.40 E-value=3.1e-12 Score=113.64 Aligned_cols=74 Identities=11% Similarity=0.188 Sum_probs=46.6
Q ss_pred CCCEEEEEECChHHHHH-HHhh--cCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHH
Q psy6807 215 KPHLVIYLDIPVSKVKE-NVKK--RNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDI 291 (395)
Q Consensus 215 ~PdlvIyLd~p~e~~~e-RI~~--Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edI 291 (395)
.|+++|||++|++++.+ |+.+ |+++.+.. -...+.+.+...|.+.+.. .. ...+++++ +..++++++++.|
T Consensus 114 ~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~---~~~~~~~~~~~~~~~~~~~-~~-~~~~~~i~-~~~~~~e~~~~~i 187 (192)
T 1kht_A 114 NPDLIIVVETTGDEILMRRMSDETRVRDLDTA---STIEQHQFMNRCAAMSYGV-LT-GATVKIVQ-NRNGLLDQAVEEL 187 (192)
T ss_dssp CCSEEEEEECCHHHHHHHHHTSSSCSSSCCCH---HHHHHHHHHHHHHHHHHHH-HH-CCEEEEEE-CCTTCHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHhhhcccCCCcCCH---HHHHHHHHHHHHHHHHHHH-hc-CCcEEEEe-CCCCCHHHHHHHH
Confidence 47899999999999996 9988 88754431 1123344455555443321 11 23455554 2446799999998
Q ss_pred HHh
Q psy6807 292 ERI 294 (395)
Q Consensus 292 e~l 294 (395)
..+
T Consensus 188 ~~~ 190 (192)
T 1kht_A 188 TNV 190 (192)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 50
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.40 E-value=6.5e-13 Score=116.22 Aligned_cols=67 Identities=25% Similarity=0.392 Sum_probs=43.7
Q ss_pred CCEEEEEECChHHHHHHHhhcC-CccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 216 PHLVIYLDIPVSKVKENVKKRN-NPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eRI~~Rg-r~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++++|||++|++++.+|+.+|+ ++... ++.+.+.+.|.+.. +.... +++++ + +.++++++.++|..+
T Consensus 93 ~~~~i~l~~~~e~~~~R~~~r~~r~~~~-------~~~~~i~~~~~~~~-~~~~~-~~~~i-~--~~~~~~~~~~~i~~~ 160 (168)
T 2pt5_A 93 RGTTVFIDIPFEVFLERCKDSKERPLLK-------RPLDEIKNLFEERR-KIYSK-ADIKV-K--GEKPPEEVVKEILLS 160 (168)
T ss_dssp TSEEEEEECCHHHHHHHCBCTTCCBGGG-------SCGGGTHHHHHHHH-HHHTT-SSEEE-E--CSSCHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHhCCCCCCCCc-------chHHHHHHHHHHHH-HHHHh-CCEEE-C--CCCCHHHHHHHHHHH
Confidence 6899999999999999998875 33211 11223333333221 11123 67777 6 678999999999774
No 51
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.39 E-value=2.1e-12 Score=118.73 Aligned_cols=32 Identities=19% Similarity=0.426 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
.+++|+|+|++||||||+++.||++++..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 46789999999999999999999999988873
No 52
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=5.2e-12 Score=114.37 Aligned_cols=165 Identities=13% Similarity=0.183 Sum_probs=89.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
.+++|+|+|++||||||+++.||+.+|..++ +.|..+.. .|..+..+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i---~~d~~~~~~~g~~i~~~~~~~------------------------- 75 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFI---DLDWYIEERFHKTVGELFTER------------------------- 75 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEE---EHHHHHHHHHTSCHHHHHHHH-------------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEE---cchHHHHHHhCCcHHHHHHhc-------------------------
Confidence 4679999999999999999999999998887 33432222 222221111000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCC-ChhHHHHHHHHHHHhCCCCCCCCEEEEEECC
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYI-TKRHKDIYYEITRFTLPPLFKPHLVIYLDIP 225 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i-~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p 225 (395)
-. ..+......+...+..+..+|++.+. |.. ..... +... .++.+|||++|
T Consensus 76 -~~---~~~~~~e~~~l~~l~~~~~~vi~~gg-------------g~~~~~~~~----~~l~-------~~~~vi~L~~~ 127 (199)
T 3vaa_A 76 -GE---AGFRELERNMLHEVAEFENVVISTGG-------------GAPCFYDNM----EFMN-------RTGKTVFLNVH 127 (199)
T ss_dssp -HH---HHHHHHHHHHHHHHTTCSSEEEECCT-------------TGGGSTTHH----HHHH-------HHSEEEEEECC
T ss_pred -Ch---HHHHHHHHHHHHHHhhcCCcEEECCC-------------cEEccHHHH----HHHH-------cCCEEEEEECC
Confidence 00 00111111122223345566666321 000 00111 1111 25899999999
Q ss_pred hHHHHHHHh-hc-CCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 226 VSKVKENVK-KR-NNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 226 ~e~~~eRI~-~R-gr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++++.+|+. .| +|+.... .-..++.+.+...|.+.. +.... +++ ++| ++..++++++++|...
T Consensus 128 ~e~l~~Rl~~~~~~Rp~~~~--~~~~~~~~~i~~~~~~r~-~~y~~-ad~-~Id-t~~~s~ee~~~~I~~~ 192 (199)
T 3vaa_A 128 PDVLFRRLRIAKQQRPILQG--KEDDELMDFIIQALEKRA-PFYTQ-AQY-IFN-ADELEDRWQIESSVQR 192 (199)
T ss_dssp HHHHHHHHHHTGGGCGGGTT--CCHHHHHHHHHHHHHHHH-HHHTT-SSE-EEE-CCCCSSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCcCC--CChhhHHHHHHHHHHHHH-HHHhh-CCE-EEE-CCCCCHHHHHHHHHHH
Confidence 999999998 44 4554332 012344555555555432 11122 454 567 3345899999998764
No 53
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.38 E-value=1.9e-13 Score=126.13 Aligned_cols=182 Identities=12% Similarity=0.073 Sum_probs=102.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc-CCCccccchhhhhhhh-------hhhhhhhhhcCCC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNEN-------LKSYDEKTFCKDP 138 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~-------~~~~~~~~f~~dp 138 (395)
..+.-|+|+|++||||||+++.|++ +|.++++.+.+.+.+.. .+..+..+...+|++. +|.......|.||
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~ 85 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDE 85 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCH
Confidence 3466899999999999999999998 99999854433333333 4555666666665432 2333334445555
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHh-cCCCChhHHHHHHHHHHHhCCCCCCCC
Q psy6807 139 KHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDK-CGYITKRHKDIYYEITRFTLPPLFKPH 217 (395)
Q Consensus 139 ~~~~~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~-~g~i~~~~~~~y~~~~~~~~~~l~~Pd 217 (395)
+.+......++-...+ ...+.+.. ..+..||+|-.+ +++ .| + .. ..|
T Consensus 86 ~~~~~L~~i~HP~I~~--~~~~~~~~--~~~~~vv~d~pL---------L~E~~~------~------~~-------~~D 133 (210)
T 4i1u_A 86 DARRRLEAITHPLIRA--ETEREARD--AQGPYVIFVVPL---------LVESRN------W------KA-------RCD 133 (210)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHT--CCSSSEEEECTT---------CTTCHH------H------HH-------HCS
T ss_pred HHHHHHHHHhhHHHHH--HHHHHHHh--cCCCEEEEEEec---------ccccCC------c------cc-------cCC
Confidence 4222222222221111 11111111 133467888322 222 11 0 01 269
Q ss_pred EEEEEECChHHHHHHHhhcC-CccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCC-CChhHHHHHHHHhh
Q psy6807 218 LVIYLDIPVSKVKENVKKRN-NPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDG-GDPEVVVEDIERID 295 (395)
Q Consensus 218 lvIyLd~p~e~~~eRI~~Rg-r~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~-~~~e~V~edIe~l~ 295 (395)
.+|+|+||+++..+|+.+|+ .+.|. ..+.+.. |.-..+..+.+++++ | |+ ++.+++.++|+.+-
T Consensus 134 ~vi~V~ap~e~r~~Rl~~Rdg~s~ee--------a~~ri~~---Q~~~eek~~~AD~VI-d--N~~gsle~l~~qV~~l~ 199 (210)
T 4i1u_A 134 RVLVVDCPVDTQIARVMQRNGFTREQ--------VEAIIAR---QATREARLAAADDVI-V--NDAATPDALAVQVDALH 199 (210)
T ss_dssp EEEEEECCHHHHHHHHHHHHCCCHHH--------HHHHHHH---SCCHHHHHHTCSEEE-E--CSSCCHHHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHhcCCCCHHH--------HHHHHHH---cCChHHHHHhCCEEE-E--CCCCCHHHHHHHHHHHH
Confidence 99999999999999999994 33221 1222221 211111123577755 6 67 89999999998754
No 54
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.38 E-value=4.4e-12 Score=116.05 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+.|+|+|++||||||+++.|++++|..++
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i 29 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQI 29 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 36899999999999999999999998776
No 55
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.37 E-value=2.8e-11 Score=106.71 Aligned_cols=164 Identities=20% Similarity=0.240 Sum_probs=87.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
+.+.+|+|+|++||||||+++.|++.+|..++.. |... . . ..+.. ..+.....+ ...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~---d~~~-~---~-~~~~~------------~~~g~~~~~---~~~ 62 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDG---DFLH-P---R-RNIEK------------MASGEPLND---DDR 62 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEG---GGGC-C---H-HHHHH------------HHTTCCCCH---HHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC---cccc-c---h-HHHHH------------hhcCcCCCc---ccc
Confidence 3578999999999999999999999998777632 2110 0 0 00000 000001110 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCC-EEEEEECC
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPH-LVIYLDIP 225 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~Pd-lvIyLd~p 225 (395)
..+ +....+.+...+..|..+|+|.+... +. +.+.+.. . .++ .+|||++|
T Consensus 63 ~~~-----~~~~~~~~~~~~~~~~~~vi~~~~~~---------------~~----~~~~l~~----~-~~~~~vv~l~~~ 113 (175)
T 1knq_A 63 KPW-----LQALNDAAFAMQRTNKVSLIVCSALK---------------KH----YRDLLRE----G-NPNLSFIYLKGD 113 (175)
T ss_dssp HHH-----HHHHHHHHHHHHHHCSEEEEECCCCS---------------HH----HHHHHHT----T-CTTEEEEEEECC
T ss_pred ccH-----HHHHHHHHHHHHhcCCcEEEEeCchH---------------HH----HHHHHHh----c-CCCEEEEEEECC
Confidence 001 11111223344556888999864321 11 1111211 1 134 79999999
Q ss_pred hHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 226 VSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 226 ~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
++++.+|+.+|+.... +.+.++ ..+.. +.+........+++| +.+++++++++|...
T Consensus 114 ~e~~~~R~~~R~~~~~------~~~~~~---~~~~~-~~~~~~~~~~~~~Id--~~~~~~~~~~~i~~~ 170 (175)
T 1knq_A 114 FDVIESRLKARKGHFF------KTQMLV---TQFET-LQEPGADETDVLVVD--IDQPLEGVVASTIEV 170 (175)
T ss_dssp HHHHHHHHHTSTTCCC------CHHHHH---HHHHH-CCCCCTTCTTEEEEE--CSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCC------chHHHH---HHHHh-hhCcccCCCCeEEEe--CCCCHHHHHHHHHHH
Confidence 9999999999974321 122222 22222 222101122356778 448999999999764
No 56
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.34 E-value=5.5e-12 Score=116.44 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
++++|+|+|++||||||+++.||+++|..++
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i 36 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHL 36 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 4689999999999999999999999998877
No 57
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.34 E-value=5.9e-12 Score=111.96 Aligned_cols=31 Identities=29% Similarity=0.281 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.+++|+|+|++||||||+++.||+++|..++
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4678999999999999999999999999887
No 58
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.31 E-value=2.3e-11 Score=106.99 Aligned_cols=162 Identities=14% Similarity=0.138 Sum_probs=81.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH-HhccccCCCCcccccccc-CCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD-ELDMIALPPANMDMFYKR-GDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~-~l~~~~~~e~~~d~~~~~-~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
+++|+|+|++||||||+++.|++ .++..++.. |..... .+.. . + + ..+ .....
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~---d~~r~~~~~~~----------~-------~-~-~~~---~~~~~ 56 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR---DDYRQSIMAHE----------E-------R-D-EYK---YTKKK 56 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECH---HHHHHHHTTSC----------C-------G-G-GCC---CCHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecH---HHHHHHhhCCC----------c-------c-c-hhh---hchhh
Confidence 46899999999999999999999 577776632 211000 0000 0 0 0 000 00011
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEE
Q psy6807 147 QIRMLQLRFSVYVDALAHML---STGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLD 223 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l---~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd 223 (395)
...+ . ....+.+...+ ..|.+||+|++..+.. ....+.++.... ..+..+|||+
T Consensus 57 ~~~~-~---~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~---------------~~~~l~~~~~~~----~~~~~~i~l~ 113 (181)
T 1ly1_A 57 EGIV-T---GMQFDTAKSILYGGDSVKGVIISDTNLNPE---------------RRLAWETFAKEY----GWKVEHKVFD 113 (181)
T ss_dssp HHHH-H---HHHHHHHHHHHTSCSSCCEEEECSCCCSHH---------------HHHHHHHHHHHH----TCEEEEEECC
T ss_pred hhHH-H---HHHHHHHHHHHhhccCCCeEEEeCCCCCHH---------------HHHHHHHHHHHc----CCCEEEEEEe
Confidence 1111 0 11123344556 7899999998775531 111222222211 1245899999
Q ss_pred CChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHH
Q psy6807 224 IPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293 (395)
Q Consensus 224 ~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~ 293 (395)
+|++++.+|+.+|+... ++.+.++.+.+.|+.... .+.+++| ... ++.|+.+|..
T Consensus 114 ~~~~~~~~R~~~R~~~~------~~~~~i~~~~~~~~~~~~------~~~~~id--~~~-~~~v~~~i~~ 168 (181)
T 1ly1_A 114 VPWTELVKRNSKRGTKA------VPIDVLRSMYKSMREYLG------LPVYNGT--PGK-PKAVIFDVDG 168 (181)
T ss_dssp CCHHHHHHHHTTCGGGC------CCHHHHHHHHHHHHHHHT------CCCC-------------------
T ss_pred CCHHHHHHHHhccccCC------CCHHHHHHHHHHhhccCC------CCccccC--CCC-Cceeeehhhh
Confidence 99999999999987521 456777777777765321 1222356 333 3777777765
No 59
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.28 E-value=1.9e-11 Score=107.16 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+++|+|+|++||||||+++.|++.+|..++
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFV 31 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 468999999999999999999999998877
No 60
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.28 E-value=1e-11 Score=108.97 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=27.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
..+.+|+|+|++||||||+++.||++||.+++
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 35679999999999999999999999999887
No 61
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.28 E-value=6.8e-12 Score=111.30 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
++++|+|+|++||||||+++.|++.++..++
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~ 40 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYI 40 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence 4678999999999999999999999998887
No 62
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.26 E-value=5.8e-11 Score=107.75 Aligned_cols=74 Identities=12% Similarity=0.006 Sum_probs=49.7
Q ss_pred CCCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHh
Q psy6807 215 KPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294 (395)
Q Consensus 215 ~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l 294 (395)
.+|.+|||++|++++.+|+..|+...|. +...+.+.+.+.|.+...........++++| +.++++++.++|...
T Consensus 129 ~~d~~i~l~~~~~~~~~R~~~R~~~~e~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Id--~~~~~eev~~~I~~~ 202 (207)
T 2qt1_A 129 IWNRSYFLTIPYEECKRRRSTRVYQPPD----SPGYFDGHVWPMYLKYRQEMQDITWEVVYLD--GTKSEEDLFLQVYED 202 (207)
T ss_dssp TCSEEEEEECCHHHHHHHHHHSCCSSCC----CTTHHHHTHHHHHHHHHHHGGGCSSCCEEEE--TTSCHHHHHHHHHHH
T ss_pred hcCeeEEEECCHHHHHHHHHHcCCCccc----hHHHHHHHHhHHHHHHHHHHHhcCCeEEEec--CCCCHHHHHHHHHHH
Confidence 5799999999999999999889865443 2222333555555443211111124567789 678999999999774
No 63
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=99.25 E-value=6.3e-12 Score=121.63 Aligned_cols=168 Identities=11% Similarity=0.074 Sum_probs=104.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
..+.+|+++|+.||||||+++.|.+.|+-.++....+.. |.. +.. ..+
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~-----------------Pt~------eE~-~~~-------- 131 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTK-----------------PTE------TER-GQW-------- 131 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCS-----------------CCH------HHH-TSC--------
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCC-----------------cCh------HHH-hch--------
Confidence 467899999999999999999999988765542111111 110 000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHH---hCCCCCCCCEEEEEE
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRF---TLPPLFKPHLVIYLD 223 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~---~~~~l~~PdlvIyLd 223 (395)
+..|+. .++-+.|..||.|||.||+.++...+ |.+...++..+.+.... ++..-..|+++|||+
T Consensus 132 ----yl~R~~------~~LP~~G~IvIfDRswYs~v~~~rv~---g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~ 198 (304)
T 3czq_A 132 ----YFQRYV------ATFPTAGEFVLFDRSWYNRAGVEPVM---GFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWIN 198 (304)
T ss_dssp ----TTHHHH------TTCCCTTCEEEEEECGGGGTTHHHHH---TSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred ----HHHHHH------HhcccCCeEEEEECCcchHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEE
Confidence 112321 22336899999999999999888765 67777655554443322 222223689999999
Q ss_pred CChHHHHHHHhhcCC-ccc---cCC-CCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCC
Q psy6807 224 IPVSKVKENVKKRNN-PWE---VNS-PIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWS 279 (395)
Q Consensus 224 ~p~e~~~eRI~~Rgr-~~E---~~~-~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t 279 (395)
+|+++.++|+++|.. +.- ... ..-..++++.+.++|.+.+..--...+++.+||++
T Consensus 199 Is~eeq~kR~~~R~~dp~k~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~ 259 (304)
T 3czq_A 199 IGREMQLKRFHDRRHDPLKIWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGN 259 (304)
T ss_dssp CCHHHHHHHHHHHHHCTTTGGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECS
T ss_pred CCHHHHHHHHHHhhcCcccccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECC
Confidence 999999999988742 110 000 00123556666777776554322346789999944
No 64
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.24 E-value=2.1e-11 Score=109.09 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH-hccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE-LDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~-l~~~~~ 98 (395)
++++|+|+|++||||||+++.||+. +|+.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 4679999999999999999999999 798887
No 65
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.22 E-value=2.4e-11 Score=113.53 Aligned_cols=32 Identities=9% Similarity=0.244 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
..+.+.|.|+|||||||+|+.|++++|+.++.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 45678999999999999999999999999884
No 66
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.21 E-value=1.2e-11 Score=112.44 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=32.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFY 107 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~ 107 (395)
....+|+|+|++||||||+++.|++.+|.+++ +.|..+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~~vi---d~D~~~ 47 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGAHVV---NVDRIG 47 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEE---EHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCEEE---ECcHHH
Confidence 34579999999999999999999999999888 445443
No 67
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.21 E-value=3e-11 Score=109.42 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
++|+|+|++||||||+++.|++ +|..++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 5899999999999999999998 888776
No 68
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.21 E-value=5.7e-11 Score=111.60 Aligned_cols=73 Identities=14% Similarity=0.256 Sum_probs=46.0
Q ss_pred CCEEEEEECChHHHHHHHhhcC-----CccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEE---EeCCCCCChhHH
Q psy6807 216 PHLVIYLDIPVSKVKENVKKRN-----NPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLV---YDWSDGGDPEVV 287 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eRI~~Rg-----r~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli---~D~t~~~~~e~V 287 (395)
++++|||++|++++++|+..|+ ...|. +-..+.......|.++..+. ...+++++ +| +.++++++
T Consensus 151 ~d~vi~l~~~~e~~~~R~~~R~~~~rg~~~e~----i~~~~~~~~~~~~~~~i~~~-~~~ad~vI~~~id--~~~s~e~v 223 (252)
T 1uj2_A 151 FQMKLFVDTDADTRLSRRVLRDISERGRDLEQ----ILSQYITFVKPAFEEFCLPT-KKYADVIIPRGAD--NLVAINLI 223 (252)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHSCCCHHH----HHHHHHHTHHHHHHHHTGGG-GGGCSEEEETGGG--CHHHHHHH
T ss_pred cCeeEEEeCCHHHHHHHHHHHHHhhhCCCHHH----HHHHHHHhccHHHHHHhhhh-hhcCcEEEecCCC--ChhHHHHH
Confidence 5899999999999999998773 32222 11223333333455443332 23466654 37 57799999
Q ss_pred HHHHHHhh
Q psy6807 288 VEDIERID 295 (395)
Q Consensus 288 ~edIe~l~ 295 (395)
.+.|..+-
T Consensus 224 ~~~I~~~l 231 (252)
T 1uj2_A 224 VQHIQDIL 231 (252)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99997754
No 69
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.19 E-value=2.7e-10 Score=100.38 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+++|+|+|++||||||+++.|+++++..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~ 32 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWL 32 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 579999999999999999999999987654
No 70
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.19 E-value=3.4e-11 Score=106.42 Aligned_cols=29 Identities=41% Similarity=0.634 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
++|+|.|++||||||+++.||++++..++
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~ 33 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFL 33 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 47999999999999999999999998887
No 71
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.19 E-value=5.7e-11 Score=108.66 Aligned_cols=30 Identities=30% Similarity=0.482 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
++++|+|+|++||||||+++.|++ +|..++
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~i 32 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVI 32 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEE
Confidence 457999999999999999999998 888777
No 72
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.18 E-value=3e-10 Score=103.57 Aligned_cols=29 Identities=34% Similarity=0.405 Sum_probs=26.7
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+.+++|+|+|++||||||+++.|++.++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35688999999999999999999999887
No 73
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.18 E-value=1.5e-11 Score=111.22 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=42.1
Q ss_pred CCEEEEEECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 216 PHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
++.+|||++|++++.+|+.+|+... .+..+.+...+.. ......+++ ++| +.++++++.++|..+-
T Consensus 124 ~~~~i~l~~~~e~~~~Rl~~R~~~~--------~~~~~~~~~~~~~---~~~~~~ad~-vId--~~~~~~~~~~~i~~~l 189 (204)
T 2if2_A 124 YDKLIVVYAPYEVCKERAIKRGMSE--------EDFERRWKKQMPI---EEKVKYADY-VID--NSGSIEETYKQVKKVY 189 (204)
T ss_dssp SSEEEEECCCHHHHHHHHHHTCCCH--------HHHHHHHTTSCCH---HHHGGGCSE-ECC--CSSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCH--------HHHHHHHHhCCCh---hHHHhcCCE-EEE--CCCCHHHHHHHHHHHH
Confidence 6899999999999999999985321 1222222221110 011223564 567 5589999999997753
No 74
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.18 E-value=1.6e-11 Score=109.22 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+++|+|+|++||||||+|+.|++++|..++
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLL 31 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 357999999999999999999999998887
No 75
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.16 E-value=2.5e-10 Score=101.77 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=27.7
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
.+++++|+|+|++||||||+++.|++.++..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999998754
No 76
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.15 E-value=6.4e-11 Score=107.55 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+++|+|+|++||||||+++.|++.++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 568999999999999999999999885
No 77
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.15 E-value=5.1e-10 Score=102.44 Aligned_cols=30 Identities=33% Similarity=0.719 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.++|+|+|++||||||+++.|++.+|..++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 468999999999999999999999998776
No 78
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.14 E-value=3.4e-11 Score=108.15 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=28.3
Q ss_pred HhccCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 64 RFNQNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 64 ~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.+..++++|+|+|++||||||+++.|++. |..++
T Consensus 3 ~~~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~i 36 (203)
T 1uf9_A 3 HEAKHPIIIGITGNIGSGKSTVAALLRSW-GYPVL 36 (203)
T ss_dssp ---CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred CcccCceEEEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence 34566789999999999999999999997 87776
No 79
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.14 E-value=2.2e-10 Score=107.91 Aligned_cols=34 Identities=35% Similarity=0.653 Sum_probs=30.3
Q ss_pred hccCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 65 FNQNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 65 ~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+.+.+.+|+|+|++||||||+++.||++||..++
T Consensus 23 m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 23 MTAIAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 3456789999999999999999999999998776
No 80
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.14 E-value=1.3e-10 Score=109.96 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=34.7
Q ss_pred HHHHHHHHhcc--CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 57 LMEDTEDRFNQ--NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 57 ~~~~~~~~~~~--~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+++.++-.+.+ ++.+|+|+|++||||||+++.||+.+|..++
T Consensus 34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~ 77 (250)
T 3nwj_A 34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFF 77 (250)
T ss_dssp HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 55666555433 3679999999999999999999999999887
No 81
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.13 E-value=9e-11 Score=112.53 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.+++|+|+|++||||||+|+.|+ .+|..++
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~i 103 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYII 103 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEE
Confidence 46799999999999999999999 5888776
No 82
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.10 E-value=2.2e-10 Score=100.46 Aligned_cols=30 Identities=30% Similarity=0.569 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+++|+|+|++||||||+++.||+.++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 578999999999999999999999997665
No 83
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.06 E-value=5e-10 Score=103.97 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=29.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
..+.+|+|+|++||||||+++.|++++|+.++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 356799999999999999999999999988773
No 84
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.05 E-value=2.6e-09 Score=97.34 Aligned_cols=31 Identities=39% Similarity=0.649 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
+++|+|+|++||||||+++.|++.+|..++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 5689999999999999999999999988873
No 85
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=99.05 E-value=3.4e-10 Score=116.78 Aligned_cols=169 Identities=15% Similarity=0.135 Sum_probs=106.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
..+.+|+|+|.+||||+|+++.|.+.++-.++....+.. |.. +. ...|
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~-----------------Pt~------~E-~~~~-------- 88 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLR-----------------PSD------EE-LERP-------- 88 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSS-----------------CCH------HH-HTSC--------
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCC-----------------CCh------hh-ccCC--------
Confidence 467899999999999999999999998766542211111 110 00 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHH---HhCCCCCCCCEEEEEE
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITR---FTLPPLFKPHLVIYLD 223 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~---~~~~~l~~PdlvIyLd 223 (395)
+..|+. .|+-+.|..||.|||.||+.++...+ |.+++.+++.+.+... .++..-..|.+++||+
T Consensus 89 ----yl~R~~------~~lP~~G~IvIfdRSwYs~~~v~rv~---g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~ 155 (500)
T 3czp_A 89 ----PQWRFW------RRLPPKGRTGIFFGNWYSQMLYARVE---GHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFH 155 (500)
T ss_dssp ----TTHHHH------HHCCCTTCEEEEESCHHHHHHHHHHT---TSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred ----hhhhHH------HhCCCCCeEEEEeCchhhHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEE
Confidence 122322 23446899999999999999877654 7788777666655543 2344445689999999
Q ss_pred CChHHHHHHHhhcCCcccc----C-CCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCC
Q psy6807 224 IPVSKVKENVKKRNNPWEV----N-SPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSD 280 (395)
Q Consensus 224 ~p~e~~~eRI~~Rgr~~E~----~-~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~ 280 (395)
+|+++..+|+++|...... + ...-..+++.....+|+..+..--...++..+||++.
T Consensus 156 is~eeq~kRl~~R~~~p~k~Wk~s~~D~~~~~~~~~Y~~a~e~~l~~T~t~~APW~vI~a~d 217 (500)
T 3czp_A 156 LSKKQLKERLKALEKDPQHSWKLSPLDWKQSEVYDRFVHYGERVLRRTSRDYAPWYVVEGAD 217 (500)
T ss_dssp CCHHHHHHCC-------------CSSCTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEECSC
T ss_pred CCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCEEEEECCC
Confidence 9999999999998642111 0 0112356666666777665543233567899999544
No 86
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.03 E-value=1.4e-09 Score=101.08 Aligned_cols=32 Identities=34% Similarity=0.376 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
+.++|+|.|++||||||+++.||++||.+++.
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 35799999999999999999999999999885
No 87
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.00 E-value=7.4e-09 Score=93.05 Aligned_cols=30 Identities=33% Similarity=0.617 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
++|+|+|++||||||+++.||+.+|..+++
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 389999999999999999999999988773
No 88
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.99 E-value=2e-09 Score=102.95 Aligned_cols=140 Identities=14% Similarity=0.181 Sum_probs=76.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh-ccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADEL-DMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l-~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
+++|+|+|++||||||+++.|++++ +..+++ .|. +.. .+ ... ..+. ..+ ......
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~---~D~-~r~----------~~----~~~-~~g~--~~~---~~~~~~ 57 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNIN---RDD-YRQ----------SI----MAH-EERD--EYK---YTKKKE 57 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEEC---HHH-HHH----------HH----TTS-CCCC--------CCHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEec---ccH-HHH----------Hh----ccC-Cccc--ccc---cchhhh
Confidence 3689999999999999999999975 776663 231 111 00 000 0000 000 000000
Q ss_pred HHHHHHHHHHHHHHHHHHH---hcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEEC
Q psy6807 148 IRMLQLRFSVYVDALAHML---STGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDI 224 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l---~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~ 224 (395)
. ... ....+.+...+ ..|.+||+|.+..+.. ....+.++... ...+..+|||++
T Consensus 58 ~-~~~---~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~---------------~~~~l~~~~~~----~~~~~~~i~l~~ 114 (301)
T 1ltq_A 58 G-IVT---GMQFDTAKSILYGGDSVKGVIISDTNLNPE---------------RRLAWETFAKE----YGWKVEHKVFDV 114 (301)
T ss_dssp H-HHH---HHHHHHHHHHTTSCTTCCEEEECSCCCCHH---------------HHHHHHHHHHH----TTCEEEEEECCC
T ss_pred h-HHH---HHHHHHHHHHHhhccCCCEEEEeCCCCCHH---------------HHHHHHHHHHH----cCCcEEEEEEEC
Confidence 0 010 11112334556 7899999997664421 11222222221 123568999999
Q ss_pred ChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHh
Q psy6807 225 PVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKN 261 (395)
Q Consensus 225 p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~ 261 (395)
|++++.+|+.+|+... ++.+-++...+.|+.
T Consensus 115 ~~e~~~~R~~~R~~~~------~~~e~i~~~~~~~~~ 145 (301)
T 1ltq_A 115 PWTELVKRNSKRGTKA------VPIDVLRSMYKSMRE 145 (301)
T ss_dssp CHHHHHHHHHHCGGGC------CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccCCC------CCHHHHHHHHHHHhc
Confidence 9999999999987421 344544544444544
No 89
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.97 E-value=3.9e-09 Score=98.69 Aligned_cols=32 Identities=31% Similarity=0.529 Sum_probs=28.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+++++|+|.|++||||||+++.|++++|..++
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 34679999999999999999999999998876
No 90
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.95 E-value=2.4e-09 Score=97.62 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
.++|+|.|++||||||+++.||++||++++.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 4699999999999999999999999999984
No 91
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.95 E-value=8.7e-10 Score=113.73 Aligned_cols=169 Identities=17% Similarity=0.119 Sum_probs=106.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
..+.+|+++|.+||||+|+++.|.+.++-.++....+.. |... +. ..|
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~-----------------Pt~~-----E~--~~~-------- 345 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAA-----------------PTEE-----ER--AQP-------- 345 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCS-----------------CCHH-----HH--TSC--------
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCC-----------------CChh-----hh--cch--------
Confidence 467899999999999999999999988766553211111 1100 00 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHH---hCCCCCCCCEEEEEE
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRF---TLPPLFKPHLVIYLD 223 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~---~~~~l~~PdlvIyLd 223 (395)
+..|+. .|+-+.|..||.|||.||+.++...+ |.+++.++..+.+.... ++.....|.+++||+
T Consensus 346 ----yl~R~~------~~lP~~G~i~IfDRswY~~~~v~rv~---g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~ 412 (500)
T 3czp_A 346 ----YLWRFW------RHIPARRQFTIFDRSWYGRVLVERIE---GFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLA 412 (500)
T ss_dssp ----TTHHHH------TTCCCTTCEEEEESCGGGGGTHHHHH---TSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ----HHHHHH------HhCCCCCeEEEEeCcchhhHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEE
Confidence 112322 23446899999999999999777655 77888777655444322 223334578999999
Q ss_pred CChHHHHHHHhhcCCcccc----C-CCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCC
Q psy6807 224 IPVSKVKENVKKRNNPWEV----N-SPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSD 280 (395)
Q Consensus 224 ~p~e~~~eRI~~Rgr~~E~----~-~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~ 280 (395)
+|+++..+|+++|...... . ...-..++......+|++.+..--...++..+|+++.
T Consensus 413 is~eeQ~~R~~~R~~~p~k~Wk~s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~d 474 (500)
T 3czp_A 413 IDKQTQMERFKEREKTPYKRYKITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEAND 474 (500)
T ss_dssp CCHHHHHHHHHHHHHSSCTTSCCCSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSS
T ss_pred CCHHHHHHHHHHHhcCCcccCCCCHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCC
Confidence 9999999999988421111 0 0111234444555555555443333567899999543
No 92
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.94 E-value=6.2e-09 Score=105.14 Aligned_cols=141 Identities=13% Similarity=0.188 Sum_probs=84.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAF 146 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~ 146 (395)
..+.+|+|+|++||||||+|+.|++.++..++.. |. ++ .+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~---D~--------~~---------------------------~~-- 295 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR---DT--------LG---------------------------SW-- 295 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCG---GG--------SC---------------------------SH--
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc---ch--------HH---------------------------HH--
Confidence 4568999999999999999999999998887732 21 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEEECCh
Q psy6807 147 QIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPV 226 (395)
Q Consensus 147 ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyLd~p~ 226 (395)
......+...+..|..||+|....+ ......+.++.... ..+..+|||++|.
T Consensus 296 ---------~~~~~~~~~~l~~g~~vIiD~~~~~---------------~~~r~~~~~~~~~~----~~~~~~v~l~~~~ 347 (416)
T 3zvl_A 296 ---------QRCVSSCQAALRQGKRVVIDNTNPD---------------VPSRARYIQCAKDA----GVPCRCFNFCATI 347 (416)
T ss_dssp ---------HHHHHHHHHHHHTTCCEEEESCCCS---------------HHHHHHHHHHHHHH----TCCEEEEEECCCH
T ss_pred ---------HHHHHHHHHHHhcCCcEEEeCCCCC---------------HHHHHHHHHHHHHc----CCeEEEEEEeCCH
Confidence 0011223344578999999976533 22223333333322 1356899999999
Q ss_pred HHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCC-CCcEEEEeCC
Q psy6807 227 SKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISD-SSELLVYDWS 279 (395)
Q Consensus 227 e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~-~~~vli~D~t 279 (395)
++|.+|+.+|+...... ..++.+.++.+...|+. |...+ ...++.+++.
T Consensus 348 e~l~~R~~~R~~~~~~~-~~~~~~~~~~~~~~~e~---P~~~E~fd~v~~v~~~ 397 (416)
T 3zvl_A 348 EQARHNNRFREMTDPSH-APVSDMVMFSYRKQFEP---PTLAEGFLEILEIPFR 397 (416)
T ss_dssp HHHHHHHHHHHHHCTTC-CCCCHHHHHHHHHHCCC---CCGGGTCSEEEEECCC
T ss_pred HHHHHHHHhhcccCCCc-CCCCHHHHHHHHHhcCC---CCcccCCcEEEEEecc
Confidence 99999999986421110 11445555555444432 32223 3456666643
No 93
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.93 E-value=9e-09 Score=92.94 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=27.3
Q ss_pred hccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 65 FNQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 65 ~~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+.+.+|+|.|++||||||+++.|+..++
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346789999999999999999999999985
No 94
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.93 E-value=9.6e-09 Score=95.77 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=28.2
Q ss_pred hccCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 65 FNQNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 65 ~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+..++.+|+|+|++||||||+++.|++++|...+
T Consensus 23 ~~~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 23 MASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp ---CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred hcCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3345789999999999999999999999987654
No 95
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.90 E-value=3.8e-08 Score=88.26 Aligned_cols=27 Identities=22% Similarity=0.567 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+.+|+|.|++||||||+++.|+..+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 578999999999999999999998764
No 96
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.90 E-value=2.1e-08 Score=88.63 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=24.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+++++|+|+|++||||||+++.|++.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999988
No 97
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.88 E-value=2.8e-09 Score=96.41 Aligned_cols=177 Identities=13% Similarity=0.159 Sum_probs=89.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhcccc-CCCCcccccccc---CCCccccchhhhhhhhhhhhhhhhhcCCCC-Cccc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIA-LPPANMDMFYKR---GDFDWRSLDAEWSNENLKSYDEKTFCKDPK-HFHT 143 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~-~~e~~~d~~~~~---~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~-~~~~ 143 (395)
++.|+|+||+|||||||++.|.+++...+ +....+.++-.. .|.+..-+.. .+..++...+.|..... +.+
T Consensus 1 ~RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~---~eF~~~i~~g~flE~~~~~g~- 76 (186)
T 1ex7_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSV---DEFKSMIKNNEFIEWAQFSGN- 76 (186)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCH---HHHHHHHHTTCEEEEEEETTE-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecH---HHHHHHHHcCCEEEEEEEcCc-
Confidence 36799999999999999999998864322 111122221111 3444432211 11112222233332211 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCC-CCCEEEEE
Q psy6807 144 IAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLF-KPHLVIYL 222 (395)
Q Consensus 144 ~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~-~PdlvIyL 222 (395)
.|....+.+...+..|+.||+|-.+ ....++.. ..+ .+-.++.+
T Consensus 77 ----------~YGt~~~~v~~~l~~g~~vil~id~---------------------~g~~~~k~----~~~~~~~~Ifi~ 121 (186)
T 1ex7_A 77 ----------YYGSTVASVKQVSKSGKTCILDIDM---------------------QGVKSVKA----IPELNARFLFIA 121 (186)
T ss_dssp ----------EEEEEHHHHHHHHHHTSEEEEECCH---------------------HHHHHHHT----CGGGCCEEEEEE
T ss_pred ----------eeeeecceeeehhhCCCEEEecCCH---------------------HHHHHHHH----hcccCceEEEEe
Confidence 1111123445567889999999543 11111211 111 23344444
Q ss_pred ECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhh
Q psy6807 223 DIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDF 296 (395)
Q Consensus 223 d~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f 296 (395)
-.|.+++.+|+.+||...+. +-.+++..+-.+.-... ...-++++++ .+.+..+++|..+..
T Consensus 122 pps~e~L~~RL~~Rg~e~~e-------~i~~Rl~~a~~e~~~~~-~~~fD~vIvN----ddle~a~~~l~~iI~ 183 (186)
T 1ex7_A 122 PPSVEDLKKRLEGRGTETEE-------SINKRLSAAQAELAYAE-TGAHDKVIVN----DDLDKAYKELKDFIF 183 (186)
T ss_dssp CSCHHHHHHHHHHHCCSCHH-------HHHHHHHHHHHHHHHHT-TTCSSEEEEC----SSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHHHhhcc-ccCCcEEEEC----cCHHHHHHHHHHHHH
Confidence 55679999999999975432 12234443332211110 1123566653 379999999888755
No 98
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.81 E-value=3.3e-08 Score=104.51 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh---ccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADEL---DMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l---~~~~~ 98 (395)
++++|+|+|++||||||+|+.|++.| |..++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v 84 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 84 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 67899999999999999999999999 66554
No 99
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.79 E-value=1.9e-09 Score=98.38 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=26.1
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+.+.+|+|.|++||||||+++.|++.++
T Consensus 5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 5 TERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999999999875
No 100
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.76 E-value=1.8e-07 Score=89.78 Aligned_cols=43 Identities=19% Similarity=0.374 Sum_probs=32.1
Q ss_pred hHHHHHHHHh------ccCCeEEEEEcCCCCChHHHHHHHHHHh--ccccC
Q psy6807 56 TLMEDTEDRF------NQNSKIIVVEGPIASGKTEFCKKLADEL--DMIAL 98 (395)
Q Consensus 56 ~~~~~~~~~~------~~~~~~I~i~G~~GsGKSTlak~La~~l--~~~~~ 98 (395)
.+++++...+ .+.+++|+|.|++||||||+++.|++++ +..++
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~I 64 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVI 64 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 3455555443 2356899999999999999999999988 44444
No 101
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.75 E-value=4e-08 Score=88.17 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=24.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+|+|+|++||||||+++.|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 357899999999999999999999876
No 102
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.75 E-value=9.9e-08 Score=86.27 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=45.5
Q ss_pred CCEEEEEECChHHHHHHHhh-----cCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCC----hhH
Q psy6807 216 PHLVIYLDIPVSKVKENVKK-----RNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGD----PEV 286 (395)
Q Consensus 216 PdlvIyLd~p~e~~~eRI~~-----Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~----~e~ 286 (395)
.|.+||||++.++...|.-. ||...+. +...+...+...|.++..+. ...+++++.+ .++ .+.
T Consensus 125 ~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~----~~~~~~~~~~~~~~~~~~~~-~~~aD~ii~~---~~~~~~~~~~ 196 (211)
T 3asz_A 125 MDLKVFVDADADERFIRRLKRDVLERGRSLEG----VVAQYLEQVKPMHLHFVEPT-KRYADVIVPR---GGQNPVALEM 196 (211)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHSCCCHHH----HHHHHHHTHHHHHHHTTGGG-GGGCSEEEES---TTSCHHHHHH
T ss_pred cCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHH----HHHHHHHhhhhhHHHhcccc-hhcCeEEEeC---CCcchHHHHH
Confidence 58999999999997766543 3554433 34556677777888766653 3467887753 455 555
Q ss_pred HHHHHHH
Q psy6807 287 VVEDIER 293 (395)
Q Consensus 287 V~edIe~ 293 (395)
+...|..
T Consensus 197 ~~~~i~~ 203 (211)
T 3asz_A 197 LAAKALA 203 (211)
T ss_dssp HHHHHTH
T ss_pred HHHHHHH
Confidence 5555544
No 103
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.74 E-value=5.7e-08 Score=101.49 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=27.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
+.+.+|+++|++||||||+++.|++.|+..
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~ 399 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQAR 399 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhc
Confidence 457899999999999999999999998863
No 104
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=98.70 E-value=5.5e-09 Score=99.92 Aligned_cols=183 Identities=9% Similarity=0.149 Sum_probs=109.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCccccccccCCCccccchhhhhhhhhhhhhhhhhcCCCCCcccHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQ 147 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~~g~d~~~l~~~l~p~~~~~~~~~~f~~dp~~~~~~~~q 147 (395)
.+.+|+++|.+||||+++++.|.+.++-.++....+.. |.. ..+
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~-----------------Pt~-------------------eE~ 117 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKA-----------------PTD-------------------EEK 117 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCS-----------------CCH-------------------HHH
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCC-----------------CCh-------------------hhh
Confidence 47899999999999999999999998866653221111 110 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCC---CCCCCCEEEEEEC
Q psy6807 148 IRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLP---PLFKPHLVIYLDI 224 (395)
Q Consensus 148 l~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~---~l~~PdlvIyLd~ 224 (395)
.+-+..|+. .++-..|+.+|+|||-|++......+ |.+++.+++.+.+.....-. .-.-.-+.+||++
T Consensus 118 ~~~ylwR~~------~~lP~~G~I~IFdRSwY~~vlverV~---g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhI 188 (289)
T 3rhf_A 118 SHDFLWRIE------KQVPAAGMVGVFDRSQYEDVLIHRVH---GWADAAELERRYAAINDFESRLTEQGTTIVKVMLNI 188 (289)
T ss_dssp TSCTTHHHH------TTCCCTTCEEEEESCGGGGGTHHHHT---TSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred cCCHHHHHH------HhCCCCCeEEEEeCchhhhHhHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEC
Confidence 011223432 24456899999999999998755443 88888877665554432222 1122346799999
Q ss_pred ChHHHHHHHhhcCCccccCCCCCcH------HHHHHHHHHHHhhcccccCCCCcEEEEeCCCCC-----ChhHHHHHHHH
Q psy6807 225 PVSKVKENVKKRNNPWEVNSPIFND------KYLHEIEDLYKNNYLPQISDSSELLVYDWSDGG-----DPEVVVEDIER 293 (395)
Q Consensus 225 p~e~~~eRI~~Rgr~~E~~~~~v~~------~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~-----~~e~V~edIe~ 293 (395)
|.++..+|+++|-...++.=+ ++. +.......+|++.+..--...++..+|++++.. -.+.|++.|+.
T Consensus 189 skeEQ~kR~~~R~~dP~k~WK-~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le~ 267 (289)
T 3rhf_A 189 SKDEQKKRLIARLDDPSKHWK-YSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALGG 267 (289)
T ss_dssp CHHHHHHHHHHHHHCGGGGGG-CCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhcCCccccc-CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999988532222100 221 122233344444443222346889999854322 24455666666
Q ss_pred hhh
Q psy6807 294 IDF 296 (395)
Q Consensus 294 l~f 296 (395)
++.
T Consensus 268 ~~~ 270 (289)
T 3rhf_A 268 LQL 270 (289)
T ss_dssp TCC
T ss_pred cCC
Confidence 544
No 105
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.70 E-value=5.3e-08 Score=91.68 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCCC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPA 101 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~ 101 (395)
++|+|.|++||||||+|+.||++++..++..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D 33 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALD 33 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEecc
Confidence 68999999999999999999999998887443
No 106
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.69 E-value=7.1e-08 Score=90.53 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=26.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+.+++|+|.|++||||||+++.|++.++.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 35679999999999999999999999873
No 107
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.64 E-value=2e-08 Score=89.75 Aligned_cols=68 Identities=9% Similarity=0.223 Sum_probs=24.5
Q ss_pred CEEEEEECCh-HHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHhhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhh
Q psy6807 217 HLVIYLDIPV-SKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295 (395)
Q Consensus 217 dlvIyLd~p~-e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~ 295 (395)
..+|||.+|. +++.+|+.+||+..|.. + . +++..+..+.-.. .....++++++ + +.+...++|..+-
T Consensus 115 ~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~---i-~---~rl~~~~~~~~~~-~~~~~d~vi~n---d-~~~~a~~~l~~~i 182 (186)
T 3a00_A 115 ARFLFIAPPSVEDLKKRLEGRGTETEES---I-N---KRLSAAQAELAYA-ETGAHDKVIVN---D-DLDKAYKELKDFI 182 (186)
T ss_dssp CEEEEEECSCC-----------------------------------------CCCCSEEEEC---S-SHHHHHHHHHHHH
T ss_pred eEEEEEECcCHHHHHHHHHhcCCCCHHH---H-H---HHHHHHHHHHHhh-cccCCcEEEEC---c-CHHHHHHHHHHHH
Confidence 4679999966 99999999999764432 1 1 2222222111000 01346777764 3 7899888887764
Q ss_pred h
Q psy6807 296 F 296 (395)
Q Consensus 296 f 296 (395)
.
T Consensus 183 ~ 183 (186)
T 3a00_A 183 F 183 (186)
T ss_dssp T
T ss_pred H
Confidence 3
No 108
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.63 E-value=3.1e-07 Score=81.59 Aligned_cols=27 Identities=41% Similarity=0.804 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+.+|+|.|++||||||+++.|+..++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCC
Confidence 468999999999999999999986543
No 109
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.59 E-value=1.3e-06 Score=90.77 Aligned_cols=33 Identities=39% Similarity=0.546 Sum_probs=29.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
....+|+++|.|||||||+|+.||+.|+..+++
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d 65 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVP 65 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence 345799999999999999999999999887764
No 110
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.58 E-value=2.3e-07 Score=91.05 Aligned_cols=171 Identities=15% Similarity=0.207 Sum_probs=83.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcccccccc--CCCccccchhhhh-hhhhhhhhhhhh-cCCCCCcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR--GDFDWRSLDAEWS-NENLKSYDEKTF-CKDPKHFH 142 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~d~~~~~--~g~d~~~l~~~l~-p~~~~~~~~~~f-~~dp~~~~ 142 (395)
.++++|+|.|++|||||||+..||++++..+++.+++.. |.. .|.......+.-+ |- -..+...+ .+.- .
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv-Yr~mdIgTakp~~eE~~gvph--hlidi~~~~~e~~---s 111 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV-YKGLDITTNKISVPDRGGVPH--HLLGEVDPARGEL---T 111 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT-BSSCTTTTTCCCSGGGTTCCE--ESSSCBCGGGCCC---C
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc-ccceeeecCCCCHHHHcCCCE--eeccccCcccCcc---C
Confidence 456799999999999999999999999988886554421 221 1111000000000 00 00011111 1110 1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCC-CCCCCCEEEE
Q psy6807 143 TIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLP-PLFKPHLVIY 221 (395)
Q Consensus 143 ~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~-~l~~PdlvIy 221 (395)
...++. ....++..+...|..+|+-... -.|..++. .|.+.+...+.........+. ..+...++|+
T Consensus 112 ~~~F~~--------~a~~~i~~i~~~g~~pIlvGGt---glYi~all-~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~ 179 (339)
T 3a8t_A 112 PADFRS--------LAGKAVSEITGRRKLPVLVGGS---NSFIHALL-VDRFDSSGPGVFEEGSHSVVSSELRYDCCFLW 179 (339)
T ss_dssp HHHHHH--------HHHHHHHHHHHTTCEEEEECCC---HHHHHHHH-BSSCCTTCC-------------CBSSEEEEEE
T ss_pred HHHHHH--------HHHHHHHHHHhcCCeEEEEcCH---HHHHHHHH-hCCCCCcccChhhhcccCccccccccCeEEEE
Confidence 111111 1123444556788888876532 23334333 232211000000000000000 1122357999
Q ss_pred EECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHHh
Q psy6807 222 LDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKN 261 (395)
Q Consensus 222 Ld~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk~ 261 (395)
|+++.+++.+||.+|.++. +....++.+...|..
T Consensus 180 L~~~re~L~~RI~~R~~~M------l~~Gl~eEv~~L~~~ 213 (339)
T 3a8t_A 180 VDVSVKVLTDYLAKRVDDM------LELGMFDELAEFYSP 213 (339)
T ss_dssp EECCHHHHHHHHHHHHHHH------HHHTHHHHHHHHCCT
T ss_pred EeCCHHHHHHHHHhhccHh------hhccHHHHHHHHHHh
Confidence 9999999999999996543 223456666666643
No 111
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.54 E-value=1.7e-07 Score=90.22 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+..+|+|+|++||||||+++.|++.++
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999999888
No 112
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.47 E-value=4e-07 Score=95.56 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=26.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+++++|+|+|++||||||+|+.|+++|+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 45689999999999999999999999885
No 113
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.41 E-value=5.6e-07 Score=81.24 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=31.2
Q ss_pred hhHHHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 55 WTLMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 55 ~~~~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+.+++..+-...+.+|+|.|++||||||+++.|+..+.
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455555544335678999999999999999999999774
No 114
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.40 E-value=1.3e-06 Score=81.33 Aligned_cols=38 Identities=29% Similarity=0.335 Sum_probs=27.5
Q ss_pred HHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 59 EDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 59 ~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
+.++-.+ +.+.+|+|.|++||||||+++.|+..+|...
T Consensus 16 ~~isl~i-~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~ 53 (245)
T 2jeo_A 16 ENLYFQS-MRPFLIGVSGGTASGKSTVCEKIMELLGQNE 53 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGG
T ss_pred cceeccC-CCCEEEEEECCCCCCHHHHHHHHHHHhchhc
Confidence 3333333 4578999999999999999999999888654
No 115
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.39 E-value=2e-06 Score=76.18 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=24.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+.+|+|.|++||||||+++.|+..++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~ 34 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPG 34 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccC
Confidence 4578999999999999999999998643
No 116
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.32 E-value=4.2e-07 Score=82.74 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+++|+|.|++|||||||++.|++.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 578999999999999999999998875
No 117
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.31 E-value=2.6e-06 Score=78.30 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=18.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHH-HHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLA-DELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La-~~l~ 94 (395)
+.+.+|+|.|++||||||+++.|+ ..+.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 457899999999999999999999 7653
No 118
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.30 E-value=2.9e-06 Score=76.83 Aligned_cols=38 Identities=24% Similarity=0.464 Sum_probs=31.0
Q ss_pred HHHHHHHHh---ccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 57 LMEDTEDRF---NQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 57 ~~~~~~~~~---~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+++..+. .+.+.+|+|.|++||||||+++.|+..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455555554 35678999999999999999999999876
No 119
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.25 E-value=3.5e-09 Score=105.79 Aligned_cols=63 Identities=6% Similarity=-0.116 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCC---CCCCCEEEEEECChHHHHHHHhhcCCccccCC--CCCcHHHHHHHHHHHHhhc
Q psy6807 201 IYYEITRFTLPP---LFKPHLVIYLDIPVSKVKENVKKRNNPWEVNS--PIFNDKYLHEIEDLYKNNY 263 (395)
Q Consensus 201 ~y~~~~~~~~~~---l~~PdlvIyLd~p~e~~~eRI~~Rgr~~E~~~--~~v~~~yl~~l~~~Yk~~~ 263 (395)
.|..+++.+... .+.||++|||++|++++.+||.+||+..+... .....+|++.++..|..|+
T Consensus 283 l~~~~~~rl~~~~~l~~~pDLliyLd~~~~~l~~RL~~Rg~t~~~~l~~~~~~~dy~~~l~~~~~~w~ 350 (377)
T 1svm_A 283 VPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSRIVEWK 350 (377)
T ss_dssp CCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCGGGSCGGGHHHHHHHH
T ss_pred hcHHHHHHHhhhhccCCCCCeEEEEeCCHHHHHHHHHHcCccHHHhhhccCCHHHHHHHHHHHHHHHH
Confidence 344455444333 56789999999999999999999997655310 0012455556666665554
No 120
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.21 E-value=3.9e-05 Score=78.28 Aligned_cols=34 Identities=38% Similarity=0.531 Sum_probs=28.7
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
.....+|++.|.+||||||+++.|++.++..+++
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~ 69 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVP 69 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCC
Confidence 3456799999999999999999999999877664
No 121
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.14 E-value=1e-05 Score=84.48 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=26.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+++.+|+|+|++||||||+++.|+..++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 4678999999999999999999999886
No 122
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.99 E-value=1.5e-05 Score=78.39 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccCCC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIALPP 100 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~~e 100 (395)
++|+|.|++||||||+|+.||+.++..+++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~ 38 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISG 38 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEEC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecc
Confidence 5899999999999999999999999877743
No 123
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.98 E-value=7.5e-05 Score=68.04 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=25.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
...++|+|+|.+||||+|+|+.|.+.+|.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 35689999999999999999999998863
No 124
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.97 E-value=5.7e-06 Score=80.77 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+.+|+|.|++||||||+++.|+..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345999999999999999999999876
No 125
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.95 E-value=3.1e-05 Score=71.26 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+.+++|.|++|||||||.+.|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4678999999999999999999998765
No 126
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.89 E-value=0.00082 Score=60.25 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+++|+|.|++||||||+++.|...+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 467899999999999999999998664
No 127
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.77 E-value=5e-05 Score=74.10 Aligned_cols=33 Identities=33% Similarity=0.470 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPA 101 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~ 101 (395)
.++|+|.|++||||||+++.||++++..+++.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~D 37 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence 468999999999999999999999998888543
No 128
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.65 E-value=5.7e-05 Score=73.41 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPAN 102 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~ 102 (395)
+.++|+|.||+||||||++..||++++..+++.++
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 45799999999999999999999999987775544
No 129
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.45 E-value=0.00037 Score=67.55 Aligned_cols=36 Identities=31% Similarity=0.365 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCCCCcc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANM 103 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~~ 103 (395)
.+++|+|.||+||||||++..||++++...++.+++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 357899999999999999999999999888765543
No 130
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.43 E-value=0.0052 Score=53.50 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLA 90 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La 90 (395)
+.+.+++|.|++||||||+++.+.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc
Confidence 457899999999999999999853
No 131
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.37 E-value=0.00031 Score=70.48 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=29.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCCCCc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPAN 102 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~~ 102 (395)
.++|+|.|++||||||++..||+.++..+++.++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3689999999999999999999999987775443
No 132
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.31 E-value=0.00014 Score=64.21 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+++|+|.|++||||||+++.|+..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467999999999999999999998764
No 133
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.30 E-value=0.00011 Score=72.54 Aligned_cols=43 Identities=16% Similarity=0.317 Sum_probs=33.1
Q ss_pred hhHHHHHHHHhc---cC--CeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 55 WTLMEDTEDRFN---QN--SKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 55 ~~~~~~~~~~~~---~~--~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
+.+.+++...+. +. ...|+|.|++||||||+++.||+.++..+
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 345566655542 22 34599999999999999999999999877
No 134
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.17 E-value=0.00037 Score=66.82 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=26.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..+.+|+|.|++||||||+++.|++.++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45679999999999999999999998874
No 135
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.08 E-value=0.00034 Score=72.32 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=27.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+++.+|+|+|.+||||||+|+.||++|+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 57789999999999999999999999996
No 136
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=96.95 E-value=0.00047 Score=64.46 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
++|+|+|++||||||+++.|++.+|.+.+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~ 30 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKY 30 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 68999999999999999999999998775
No 137
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=96.92 E-value=0.0012 Score=63.47 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
..+++|+|.|| ||+|+.+.|.+.+.
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~ 127 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFP 127 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCT
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCc
Confidence 34688999998 79999999998774
No 138
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.91 E-value=0.00074 Score=64.96 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=25.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
..+.+|+|.|++||||||+++.|+..++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999999876
No 139
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.83 E-value=0.00067 Score=60.15 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+.++|.|++||||||+++.|+..++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999998873
No 140
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.82 E-value=0.00065 Score=64.83 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.++.+.|.|+||+|||++|+.+|+.++..++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i 65 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPI 65 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4467889999999999999999999987765
No 141
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.75 E-value=0.00087 Score=60.26 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=24.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+.+++|.|++||||||+++.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999998764
No 142
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.75 E-value=0.00074 Score=61.53 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=24.1
Q ss_pred HHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 59 EDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 59 ~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.++-.+ +.+.+++|.|++||||||+++.|+..+
T Consensus 14 ~~isl~i-~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 14 LVPRGSM-NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCceec-CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3344344 357899999999999999999999866
No 143
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.70 E-value=0.00083 Score=58.71 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=24.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
..+..++|.|++||||||+++.++..+.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999998763
No 144
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.69 E-value=0.001 Score=64.30 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=25.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+.+|+|.|++||||||+++.|+..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 5678999999999999999999998774
No 145
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.59 E-value=0.0026 Score=54.56 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=30.2
Q ss_pred HHHHHHHHhc-cCCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 57 LMEDTEDRFN-QNSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 57 ~~~~~~~~~~-~~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
.+.++...+. .....++|.|++|+||||+++.+++.+...
T Consensus 30 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 70 (195)
T 1jbk_A 30 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIING 70 (195)
T ss_dssp HHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3444444443 345789999999999999999999987653
No 146
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.57 E-value=0.0013 Score=60.54 Aligned_cols=31 Identities=32% Similarity=0.347 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.++.|.|.|++|+||||+|+.+|+.++..++
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4567999999999999999999999987654
No 147
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.54 E-value=0.0017 Score=56.58 Aligned_cols=27 Identities=15% Similarity=0.480 Sum_probs=25.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 567899999999999999999999876
No 148
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.52 E-value=0.0016 Score=57.61 Aligned_cols=29 Identities=24% Similarity=0.134 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
.+++|+|.|++||||||++..|+..|...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 36789999999999999999999887543
No 149
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.51 E-value=0.0016 Score=61.45 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.++.|.|.|++|+||||+|+.+|+.++..++
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 4678999999999999999999999987654
No 150
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.49 E-value=0.0041 Score=55.85 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
.+..++|.|++|+||||+++.+++.++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999987643
No 151
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.47 E-value=0.0017 Score=60.13 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
++-|+|.|++|+||||+++.||..++.+++
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEE
Confidence 456999999999999999999999876554
No 152
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.47 E-value=0.00099 Score=60.60 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=28.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCCC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALPPA 101 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e~ 101 (395)
-.++.|+|.|++||||||+|..|+++.+ ..+..+
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 3568899999999999999999999866 666443
No 153
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.46 E-value=0.0016 Score=60.99 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=28.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
..+..|.|.|++|+||||+++.+|+.++..++
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 35678999999999999999999999887665
No 154
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.44 E-value=0.0016 Score=62.12 Aligned_cols=32 Identities=31% Similarity=0.383 Sum_probs=28.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
..++.|.|.|++|+||||+|+.||..++..++
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i 78 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFI 78 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEE
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEE
Confidence 45678999999999999999999999886655
No 155
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=96.38 E-value=0.013 Score=62.96 Aligned_cols=171 Identities=13% Similarity=0.154 Sum_probs=84.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcccc-CCCCcccccccc---CCCccccc-hhhhhhhhhhhhhhhhhcCCCCCcc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIA-LPPANMDMFYKR---GDFDWRSL-DAEWSNENLKSYDEKTFCKDPKHFH 142 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~-~~e~~~d~~~~~---~g~d~~~l-~~~l~p~~~~~~~~~~f~~dp~~~~ 142 (395)
..+.|+|.|+ ||+|+.+.|.+.+.-.+ +....+.+.-.. .|.++.-+ .. .+..+....+.|.+..+
T Consensus 530 ~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~---~~f~~~i~~~~flE~~~--- 600 (721)
T 2xkx_A 530 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSR---EKMEKDIRAHKFIEAGQ--- 600 (721)
T ss_pred CCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCH---HHHHHHHhcCCceEEEE---
Confidence 4588999999 49999999998764222 111111111111 33333211 10 11111222233332211
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeccCcchHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCCCEEEEE
Q psy6807 143 TIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYL 222 (395)
Q Consensus 143 ~~~~ql~~~~~R~~q~~~al~~~l~tG~~VIlDRs~~Sd~vf~~a~~~~g~i~~~~~~~y~~~~~~~~~~l~~PdlvIyL 222 (395)
+....|..-.+++...++.|+.||+|-.. + ...++.. ..+ .| ++|||
T Consensus 601 -------~~g~~YGt~~~~v~~~~~~g~~~ildi~~------~---------------~~~~l~~---~~~-~p-~~ifi 647 (721)
T 2xkx_A 601 -------YNSHLYGTSVQSVREVAEQGKHCILDVSA------N---------------AVRRLQA---AHL-HP-IAIFI 647 (721)
T ss_pred -------ECCccceeeHHHHHHHHHCCCcEEEeCCH------H---------------HHHHHHh---ccc-CC-EEEEE
Confidence 01112233345566677899999999532 0 0011111 111 34 89999
Q ss_pred ECChHHHHHHHhhcCCccccCCCCCcHHHHHHHHHHHH--hhcccccCCCCcEEEEeCCCCCChhHHHHHHHHhhhc
Q psy6807 223 DIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYK--NNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFD 297 (395)
Q Consensus 223 d~p~e~~~eRI~~Rgr~~E~~~~~v~~~yl~~l~~~Yk--~~~l~~~~~~~~vli~D~t~~~~~e~V~edIe~l~f~ 297 (395)
..|....++++.+|+...+ ..++++.+-+ ..+ ....++++++ .+.++..+++..+...
T Consensus 648 ~pps~~~L~~l~~R~t~~~---------~~~rl~~a~~~e~~~----~~~fd~vi~N----d~l~~a~~~l~~~i~~ 707 (721)
T 2xkx_A 648 RPRSLENVLEINKRITEEQ---------ARKAFDRATKLEQEF----TECFSAIVEG----DSFEEIYHKVKRVIED 707 (721)
T ss_pred eCCcHHHHHHHhccCCHHH---------HHHHHHHHHHHHHhc----cccCcEEEEC----cCHHHHHHHHHHHHHh
Confidence 9876666666888874311 1233333321 111 1123555542 3788888888776543
No 156
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.37 E-value=0.0032 Score=54.10 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=30.0
Q ss_pred HHHHHHHHhc-cCCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 57 LMEDTEDRFN-QNSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 57 ~~~~~~~~~~-~~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
.+..+...+. .....++|.|++|+||||+++.+++.+...
T Consensus 30 ~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~ 70 (187)
T 2p65_A 30 EIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQG 70 (187)
T ss_dssp HHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3444444443 345688999999999999999999987543
No 157
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.36 E-value=0.0028 Score=59.18 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=27.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.....+.|.|++|+|||++|+.+|+.++.+++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~ 93 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFI 93 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 45578999999999999999999999887654
No 158
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.34 E-value=0.0042 Score=55.17 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
+..++|.|++|+||||+++.+++.++...
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~ 73 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCET 73 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 35899999999999999999999887543
No 159
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.33 E-value=0.002 Score=58.67 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+++.|+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5688999999999999999999984
No 160
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.27 E-value=0.002 Score=60.91 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=24.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 72 IVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 72 I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
|+|.|++||||||+++.||..++..++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 999999999999999999998876443
No 161
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=96.27 E-value=0.0042 Score=59.56 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
..+.|||.|+ ||+|+.+.|.+++.-.+
T Consensus 99 ~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f 125 (292)
T 3tvt_A 99 YTRPVIILGP---LKDRINDDLISEYPDKF 125 (292)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTE
T ss_pred CCCeEEEeCC---CHHHHHHHHHHhChhhc
Confidence 4478999988 59999999998876443
No 162
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.27 E-value=0.0022 Score=57.58 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=27.1
Q ss_pred HHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 59 EDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 59 ~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
|+.+..--+.+.+++|.|++||||||+++.|+..+
T Consensus 15 D~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 15 DKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44443223567899999999999999999999743
No 163
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.24 E-value=0.0021 Score=59.47 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=22.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+.+.|+-
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4578999999999999999999984
No 164
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.22 E-value=0.0026 Score=61.69 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
...++|.|++||||||+++.+|..++..+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 36799999999999999999999987644
No 165
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.19 E-value=0.0033 Score=55.60 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.++|+|.|++||||||+++.|...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999998764
No 166
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.19 E-value=0.0032 Score=59.18 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=25.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+.+|+|.|++||||||+.+.|+..+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 5678999999999999999999998654
No 167
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.0027 Score=64.13 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
.++=|.+.||||+|||++|+.+|.+++..++.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~ 236 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR 236 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence 45669999999999999999999999998763
No 168
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.18 E-value=0.0024 Score=62.45 Aligned_cols=31 Identities=35% Similarity=0.428 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
....|+|.|++|+|||++|+.||+.++.+++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~ 80 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFT 80 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 3467999999999999999999999987665
No 169
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.17 E-value=0.0028 Score=54.35 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+..++|.|++||||||+++.++..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999998773
No 170
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.0029 Score=64.06 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=29.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
..++=|.+.||||+|||++|+.+|.+++..++.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 346789999999999999999999999998763
No 171
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.14 E-value=0.0023 Score=58.75 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+.+.|+-
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999999974
No 172
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0031 Score=63.90 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
.++=|.+.||||+|||++|+.+|.+++..++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~ 245 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIF 245 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 45789999999999999999999999998763
No 173
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.09 E-value=0.0027 Score=58.74 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999854
No 174
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.09 E-value=0.0019 Score=59.89 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
++-|.|.|++|+|||++|+.||+.++.+++.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 4458899999999999999999999887663
No 175
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.08 E-value=0.003 Score=59.38 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.+..|.|.|++|+|||++|+.+++.++..++
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4567999999999999999999999976554
No 176
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.07 E-value=0.0034 Score=60.37 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
++-|.|.|++|+|||++|+.+|+.++..++
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~ 80 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFF 80 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEE
Confidence 467999999999999999999999987765
No 177
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.07 E-value=0.0033 Score=56.26 Aligned_cols=25 Identities=28% Similarity=0.516 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+|+|.|++||||||+++.|+..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4789999999999999999998773
No 178
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.07 E-value=0.003 Score=58.28 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
-|+|.|++||||||+++.++..++..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~ 76 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVP 76 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 38999999999999999999987643
No 179
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.05 E-value=0.0039 Score=55.77 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
..+.+++|.|++||||||+++.|+..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999654
No 180
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.05 E-value=0.0029 Score=64.17 Aligned_cols=30 Identities=33% Similarity=0.486 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
++.|++.|++|+||||+|+.||+.++..++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~ 79 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCce
Confidence 467999999999999999999999998776
No 181
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.05 E-value=0.0038 Score=61.07 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=28.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
...+.|.|.|++|+|||++|+.+|+.++..++
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 35678999999999999999999999887665
No 182
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.0031 Score=63.21 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
.++=|.+.||||+|||++|+.+|.+++..++.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 45779999999999999999999999998874
No 183
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.03 E-value=0.004 Score=59.95 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+.+|+|.|++||||||+++.||..+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999999998764
No 184
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.00 E-value=0.0032 Score=59.25 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+.+.|+-
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999974
No 185
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.00 E-value=0.0041 Score=60.02 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.5
Q ss_pred HHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 58 MEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 58 ~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
++.++-.+ +.+.+++|.|++|||||||++.|+..+
T Consensus 116 L~~vsl~i-~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 116 LKLWLKGI-PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHTC-TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hccceEEe-cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44444444 467899999999999999999999876
No 186
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.00 E-value=0.0038 Score=61.21 Aligned_cols=31 Identities=35% Similarity=0.502 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
....|.|.|++|+||||+|+.||+.++.+++
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3567999999999999999999999976654
No 187
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.99 E-value=0.0033 Score=58.29 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+.+.|+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999853
No 188
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.97 E-value=0.0038 Score=58.21 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+.+.|+-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999985
No 189
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.97 E-value=0.0046 Score=59.47 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+.+|+|.|+.||||||+++.||..+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998764
No 190
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.97 E-value=0.0032 Score=57.89 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+.+.|+-.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999853
No 191
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.97 E-value=0.0031 Score=59.87 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+++.|+-
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHc
Confidence 4678999999999999999999975
No 192
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.96 E-value=0.0032 Score=59.38 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+++.|+-
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4678999999999999999999984
No 193
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.96 E-value=0.0033 Score=58.65 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+.+.|+-
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999975
No 194
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.95 E-value=0.0033 Score=58.25 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.||||||+.+.|+-
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999985
No 195
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.95 E-value=0.0046 Score=54.74 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..|+|.|++|+||||+++.++..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999998753
No 196
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.95 E-value=0.0042 Score=60.00 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-ccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADEL-DMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l-~~~~~ 98 (395)
.++-|.|.|++|+|||++|+.+|+.+ +..++
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 34789999999999999999999998 55543
No 197
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.92 E-value=0.0035 Score=58.74 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=22.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.||||||+.+.|+-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999974
No 198
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.90 E-value=0.0037 Score=58.95 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=22.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++|||||||.+.|+-
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHc
Confidence 4678999999999999999999984
No 199
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.90 E-value=0.0063 Score=51.42 Aligned_cols=29 Identities=10% Similarity=0.104 Sum_probs=24.7
Q ss_pred hccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 65 FNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 65 ~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
.......|.|.|++|+|||++|+.+++..
T Consensus 20 ~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 20 LSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp HTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred HhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34556789999999999999999999864
No 200
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.90 E-value=0.0031 Score=57.59 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=22.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.||||||+.+.|+-
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999999974
No 201
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.90 E-value=0.0022 Score=56.51 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
+++|+|.|++||||||+++.|+..+...
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3689999999999999999999877543
No 202
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.90 E-value=0.0051 Score=59.89 Aligned_cols=28 Identities=36% Similarity=0.369 Sum_probs=24.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+.+|+|.|++||||||+++.||..+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999998664
No 203
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0039 Score=63.47 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=29.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
+.++=|.+.||||+|||++|+.+|.+++..++.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~ 273 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIR 273 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence 456889999999999999999999999998863
No 204
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.89 E-value=0.0097 Score=60.19 Aligned_cols=58 Identities=12% Similarity=0.156 Sum_probs=34.2
Q ss_pred CCCCCCCCCCCCCCCchhhhHHHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 37 DLRRPPPYPYETRDFKFPWTLMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 37 ~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..+|+-|.++..+.- .+...+..+...+......++|.|++||||||++..+++.+..
T Consensus 14 ~~~~~~p~~~~~Ln~-~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~ 71 (459)
T 3upu_A 14 LVPRGSHMTFDDLTE-GQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIS 71 (459)
T ss_dssp -------CCSSCCCH-HHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CccccCCCccccCCH-HHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 344555555554431 1223445555444443459999999999999999999988743
No 205
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.88 E-value=0.0045 Score=58.35 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.||||||+.+.|+-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999985
No 206
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.87 E-value=0.0052 Score=59.23 Aligned_cols=27 Identities=37% Similarity=0.463 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+.+|+|.|++||||||++..||..+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 457999999999999999999998764
No 207
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.87 E-value=0.0039 Score=58.95 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++|||||||++.|+-
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999975
No 208
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.86 E-value=0.004 Score=58.51 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+.+.|+-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999985
No 209
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.85 E-value=0.004 Score=58.44 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.|||||||.+.|+-
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999999974
No 210
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.85 E-value=0.0047 Score=58.33 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=25.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
..+..|+|.|++|+|||++|+.+|+.++..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 345579999999999999999999988653
No 211
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.83 E-value=0.0051 Score=54.80 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=26.4
Q ss_pred HHHHHH-HhccCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 58 MEDTED-RFNQNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 58 ~~~~~~-~~~~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+|+.+. -+ ..+.+++|.|++||||||++..|+.
T Consensus 9 LD~~l~Ggi-~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 9 LDSLLGGGF-APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHTTSSB-CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhhcCCC-cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344443 33 4578999999999999999999997
No 212
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.82 E-value=0.0097 Score=56.90 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
.+..++|.|++|+||||+++.+++.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34689999999999999999999987
No 213
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.82 E-value=0.0045 Score=60.61 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.+-|.|.|++|+|||++|+.+|+.++..++
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~ 113 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFF 113 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 356899999999999999999999987765
No 214
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.81 E-value=0.0047 Score=55.96 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=27.3
Q ss_pred HHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 58 MEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 58 ~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+|+.+..--+.+.+++|.|++||||||++..|+..
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44444322356789999999999999999999974
No 215
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.79 E-value=0.0043 Score=56.35 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+-.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999999999864
No 216
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.79 E-value=0.005 Score=57.18 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~ 92 (395)
.+++|.|++||||||+.+.|+--
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 78999999999999999999853
No 217
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.76 E-value=0.0046 Score=58.23 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.||||||+.+.|+-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4578999999999999999999974
No 218
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.76 E-value=0.0047 Score=57.90 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
-|+|.|++||||||+++.|+..++.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~ 99 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARV 99 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred eEEEECCCcChHHHHHHHHHHHcCC
Confidence 3899999999999999999998763
No 219
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.76 E-value=0.0044 Score=57.90 Aligned_cols=26 Identities=23% Similarity=0.486 Sum_probs=23.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||.+.|+-.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45789999999999999999999853
No 220
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.0056 Score=61.78 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=29.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
+.++=|.+.||||+|||++|+.+|.+++..++.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~ 246 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLR 246 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence 345789999999999999999999999998864
No 221
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.74 E-value=0.0059 Score=58.49 Aligned_cols=28 Identities=39% Similarity=0.322 Sum_probs=24.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+.+|+|.|+.||||||++..||..+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999998764
No 222
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.72 E-value=0.0046 Score=58.76 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.|||||||.+.|+-
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4678999999999999999999985
No 223
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.71 E-value=0.0061 Score=53.53 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..++|.|++|+||||+++.+++.+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 35999999999999999999998753
No 224
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.70 E-value=0.011 Score=52.87 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=28.0
Q ss_pred HHHHHHh-ccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 59 EDTEDRF-NQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 59 ~~~~~~~-~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.....+ ..+.+.|+|.|.+||||||++..|+..+.
T Consensus 19 ~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 19 EKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3334443 24678999999999999999999998764
No 225
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.69 E-value=0.0048 Score=57.72 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+.+.|+-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999999853
No 226
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.67 E-value=0.0029 Score=56.43 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHH
Q psy6807 71 IIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~ 92 (395)
+|.|.|++||||||+|..|+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 4789999999999999999976
No 227
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.67 E-value=0.0056 Score=58.71 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
....|.|.|++|+|||++|+.+++.++..++
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~ 84 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIK 84 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 4467999999999999999999999887654
No 228
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.66 E-value=0.0072 Score=59.63 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+.+|+|.|+.||||||+++.||..+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 467999999999999999999998764
No 229
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.64 E-value=0.0058 Score=60.29 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+.+.|+--
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcC
Confidence 45789999999999999999999953
No 230
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.59 E-value=0.0068 Score=58.72 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
++.+.|.|++|+|||++|+.+|+.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999999874
No 231
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.59 E-value=0.0077 Score=59.44 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
..+.|.|.|++|+|||++|+.+|..++..++
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 3578999999999999999999999988765
No 232
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.58 E-value=0.0079 Score=53.37 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
.++++++.|++||||||++-.++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999997777655
No 233
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.57 E-value=0.0075 Score=56.99 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=28.7
Q ss_pred HHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 58 MEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 58 ~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
++.++..+ +.+.+++|.|++||||||+++.|+..+
T Consensus 25 Ld~i~~~l-~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 25 INDKTLGA-RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp HHHHHCSB-CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56666444 467899999999999999999999765
No 234
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.54 E-value=0.01 Score=57.42 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=23.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
.++|.|++|+||||+++.+++.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999998743
No 235
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.53 E-value=0.0072 Score=59.63 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+.+.|+--
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 45789999999999999999999953
No 236
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.52 E-value=0.0072 Score=60.10 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+.+.|+--
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 45789999999999999999999853
No 237
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.51 E-value=0.007 Score=59.59 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+.+.|+-
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4678999999999999999999985
No 238
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.51 E-value=0.016 Score=55.48 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=28.3
Q ss_pred HHHHHHHHhccC-CeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 57 LMEDTEDRFNQN-SKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 57 ~~~~~~~~~~~~-~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..+.+...+... ...+.|.|++|+||||+++.+++.++.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344444444322 234899999999999999999998764
No 239
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.50 E-value=0.0074 Score=59.57 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+.+.|+-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCchHHHHHHHHhc
Confidence 4578999999999999999999985
No 240
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.50 E-value=0.0073 Score=62.13 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.+.++|.|++|+||||+|+.+|+.++..++
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 478999999999999999999999987665
No 241
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.48 E-value=0.0069 Score=59.37 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
...++|.|++|||||||++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5789999999999999999999876543
No 242
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.47 E-value=0.0093 Score=57.53 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=24.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
..+..++|.|++|+||||+++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999987
No 243
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.47 E-value=0.0089 Score=59.07 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=25.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+.+|+|.|++||||||+++.|+..+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 5678999999999999999999998664
No 244
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.46 E-value=0.0077 Score=59.67 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+.+.||-
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHc
Confidence 4678999999999999999999985
No 245
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.45 E-value=0.0076 Score=60.99 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
++-|.+.|+||+|||++|+.+|+.++
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 46799999999999999999999998
No 246
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.45 E-value=0.0073 Score=58.61 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=24.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
..+..++|.|++|+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999987
No 247
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.44 E-value=0.0065 Score=58.08 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=23.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+.+.|+-.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 46789999999999999999999853
No 248
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.42 E-value=0.0093 Score=61.27 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+.+|+|.|++||||||+++.|+..+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 467999999999999999999998764
No 249
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.40 E-value=0.01 Score=55.88 Aligned_cols=26 Identities=38% Similarity=0.443 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..+.|.|++|+||||+|+.||+.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 57999999999999999999998743
No 250
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.39 E-value=0.0082 Score=59.48 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+.+.|+-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHc
Confidence 4578999999999999999999985
No 251
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.39 E-value=0.009 Score=54.10 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
..+.+++|.|++||||||++..++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998887643
No 252
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.37 E-value=0.0065 Score=57.67 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
....++|.|++|+||||+|+.+++.++..++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4578999999999999999999999886543
No 253
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.35 E-value=0.0089 Score=59.10 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+.+.|+-
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhc
Confidence 4678999999999999999999984
No 254
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.35 E-value=0.0099 Score=58.49 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=24.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
..+.+|+|.|++||||||+.+.|+..+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 3456999999999999999999988764
No 255
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.34 E-value=0.0076 Score=56.76 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+++|.|++||||||+.+.|+-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 77999999999999999999974
No 256
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.32 E-value=0.012 Score=54.15 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=24.4
Q ss_pred hccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 65 FNQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 65 ~~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+..+.+++++|++||||||++-.++.++.
T Consensus 8 ~~~~G~i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 8 SKKIGWIEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp ---CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 345688999999999999999988888774
No 257
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.31 E-value=0.0057 Score=60.16 Aligned_cols=28 Identities=43% Similarity=0.604 Sum_probs=24.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+.+|+|.|++||||||+++.|+..+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4578999999999999999999987543
No 258
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.28 E-value=0.011 Score=61.48 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.+..++|.|++||||||+++.||..++..+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 4678999999999999999999999876543
No 259
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.26 E-value=0.0094 Score=60.98 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
++-|.|.|++|+||||+++.+|.+++.+++
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~ 78 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFF 78 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 356999999999999999999999987765
No 260
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.25 E-value=0.0066 Score=59.62 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+.+.||-
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCccHHHHHHHHHc
Confidence 4578999999999999999999984
No 261
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.24 E-value=0.01 Score=54.20 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
..|+|.||||+||||+|..||+.++-..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 46999999999999999999998865443
No 262
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.24 E-value=0.0089 Score=57.58 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=24.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
..+..++|.|++|+||||+++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999987
No 263
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.23 E-value=0.0057 Score=58.98 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=23.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcC
Confidence 46789999999999999999999753
No 264
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.21 E-value=0.0098 Score=59.30 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=23.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+.+.|+-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCChHHHHHHHHhC
Confidence 4678999999999999999999985
No 265
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.17 E-value=0.0051 Score=51.97 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=24.7
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
......|.|.|++|+|||++|+.+++..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 34566799999999999999999998655
No 266
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.15 E-value=0.013 Score=56.66 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+++|+|.|+.||||||++..||..+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998764
No 267
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.15 E-value=0.014 Score=55.93 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
....|.|.|++|+|||++|+.+++.++.
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCceEEEECCCCccHHHHHHHHHHhCcc
Confidence 3445999999999999999999998863
No 268
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.13 E-value=0.014 Score=54.11 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=25.0
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
......|.|.|++|+|||++|+.+++.++
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 34567899999999999999999998764
No 269
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.13 E-value=0.014 Score=58.62 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=25.6
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
...+.+|+|.|+.||||||+.+.|...+.
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 35677999999999999999999998765
No 270
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.13 E-value=0.014 Score=56.81 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=24.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
.++.+|+|.|++||||||+.+.|+..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 568899999999999999999999765
No 271
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.11 E-value=0.012 Score=55.10 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
..+.+++|.|++||||||++..++..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999744
No 272
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.10 E-value=0.015 Score=56.86 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=24.1
Q ss_pred cCCeEEEE--EcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVV--EGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i--~G~~GsGKSTlak~La~~l~ 94 (395)
..+..++| .|++|+||||+++.+++.+.
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 35678888 99999999999999998764
No 273
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.09 E-value=0.012 Score=59.45 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh-ccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADEL-DMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l-~~~~~ 98 (395)
.++-|.|.|++|+|||++|+.+|..+ +..++
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~ 197 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFF 197 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEE
Confidence 35789999999999999999999998 55543
No 274
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.08 E-value=0.015 Score=49.57 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=23.5
Q ss_pred hccCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 65 FNQNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 65 ~~~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.++...|+|.|.+||||||+...|..
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 445678899999999999999999974
No 275
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.05 E-value=0.0066 Score=59.73 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|++||||||+.+.|+-
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4578999999999999999999985
No 276
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.05 E-value=0.014 Score=56.23 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=21.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHhc
Q psy6807 72 IVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 72 I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+++.|++|+||||+++.||..+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999874
No 277
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.03 E-value=0.014 Score=52.56 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+++++++|++|||||++|..+...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 578999999999999999886544
No 278
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.01 E-value=0.032 Score=53.87 Aligned_cols=47 Identities=9% Similarity=0.132 Sum_probs=34.8
Q ss_pred CchhhhHHHHHHHHhc--cCCeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 51 FKFPWTLMEDTEDRFN--QNSKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 51 ~~~~~~~~~~~~~~~~--~~~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
|-|+..........+. +-+..+.+.|++|+||||+|+.+|+.+....
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 4555555555555543 2345799999999999999999999987654
No 279
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.00 E-value=0.026 Score=55.06 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=24.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+..+|+|+|.+||||||++..|+..+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998763
No 280
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.98 E-value=0.035 Score=53.51 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
+..++|.|++|+||||+++.+++.++..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4578999999999999999999998754
No 281
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.94 E-value=0.043 Score=51.62 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..+.|.|++|+||||+++.+++.+..
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~~ 72 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcC
Confidence 35999999999999999999998753
No 282
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.94 E-value=0.0092 Score=57.16 Aligned_cols=30 Identities=27% Similarity=0.219 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+..+.+.|++|+|||++++.||+.++..+.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 457999999999999999999999886543
No 283
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.93 E-value=0.013 Score=59.34 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
...++|.|++|+||||+|+.|++.++..++
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~~~~f~ 79 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYANADVE 79 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 357999999999999999999999887654
No 284
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.91 E-value=0.015 Score=58.84 Aligned_cols=28 Identities=36% Similarity=0.247 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
.+.+|++.|++||||||++..||..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999999987743
No 285
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.91 E-value=0.017 Score=51.65 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+...|+|.|.+||||||++..|+..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999875
No 286
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.89 E-value=0.013 Score=56.52 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+..+++|+|+.||||||+.+.|...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3578999999999999999999864
No 287
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.85 E-value=0.028 Score=48.59 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=25.7
Q ss_pred HHHHHhccCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 60 DTEDRFNQNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 60 ~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
++.+-+.++...|+|.|.+||||||+...|..
T Consensus 7 ~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 7 RIWRLFNHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HHHHHHTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHhcCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 33333456678899999999999999999984
No 288
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.85 E-value=0.015 Score=54.88 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l 93 (395)
..++|.|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999765
No 289
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.85 E-value=0.016 Score=56.64 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
.+.+|+|.|.+||||||+.+.|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999999765
No 290
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.85 E-value=0.038 Score=56.12 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=31.2
Q ss_pred HHHHHHHHhc-cCCeEEEEEcCCCCChHHHHHHHHHHhccccCCC
Q psy6807 57 LMEDTEDRFN-QNSKIIVVEGPIASGKTEFCKKLADELDMIALPP 100 (395)
Q Consensus 57 ~~~~~~~~~~-~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~e 100 (395)
.+.++...+. .....++|.|++|+|||++++.||+.+....+|+
T Consensus 188 ~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~ 232 (468)
T 3pxg_A 188 EIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPE 232 (468)
T ss_dssp HHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCT
T ss_pred HHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCCh
Confidence 3344443332 3345789999999999999999999986555543
No 291
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.84 E-value=0.017 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999974
No 292
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.84 E-value=0.021 Score=51.17 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=24.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+++++++.|++||||||.+-.++.++.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4578999999999999999999988773
No 293
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.80 E-value=0.012 Score=64.01 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.++=|.+.|+||+|||++|+.+|.++|..++
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~ 267 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFF 267 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 3567999999999999999999999998876
No 294
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.019 Score=49.84 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
.....|+|.|.+||||||+...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999999863
No 295
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.77 E-value=0.02 Score=47.76 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.|+|.|.+||||||+...|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 296
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.75 E-value=0.016 Score=50.78 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
...|+|.|++|||||||.+.|+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999999863
No 297
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.013 Score=59.54 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=24.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|+.|||||||++.|+..+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 467899999999999999999999754
No 298
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.71 E-value=0.016 Score=55.26 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.+.++.+.|++|+||||+++.+++.++..++
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~ 77 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNADMM 77 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTEEEE
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEE
Confidence 3467888888999999999999999986654
No 299
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.69 E-value=0.029 Score=53.22 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+++|.|+.|+||||+++.+++..+
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcC
Confidence 37999999999999999999999875
No 300
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.69 E-value=0.017 Score=50.86 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|++|||||||.+.|+.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 45789999999999999999986
No 301
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.69 E-value=0.03 Score=53.22 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=29.3
Q ss_pred HHHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 57 LMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 57 ~~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
.++.+.. +.. .+++|.|+.|+||||+++.+++.++.
T Consensus 21 el~~L~~-l~~--~~v~i~G~~G~GKT~L~~~~~~~~~~ 56 (357)
T 2fna_A 21 EIEKLKG-LRA--PITLVLGLRRTGKSSIIKIGINELNL 56 (357)
T ss_dssp HHHHHHH-TCS--SEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred HHHHHHH-hcC--CcEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4555556 654 69999999999999999999998753
No 302
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.68 E-value=0.02 Score=49.71 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+.+|.|+.||||||+++.|.-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3889999999999999999987665
No 303
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.68 E-value=0.032 Score=53.49 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
...++|.|++|+|||+++..++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999998776
No 304
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.64 E-value=0.026 Score=56.71 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
.+.+|+|.|++||||||+.+.|+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 345999999999999999999985
No 305
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.62 E-value=0.021 Score=48.90 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=25.8
Q ss_pred HHHHHHHh-c-cCCeEEEEEcCCCCChHHHHHHHH
Q psy6807 58 MEDTEDRF-N-QNSKIIVVEGPIASGKTEFCKKLA 90 (395)
Q Consensus 58 ~~~~~~~~-~-~~~~~I~i~G~~GsGKSTlak~La 90 (395)
+.+..+++ . ++...|+|.|.+||||||+...|.
T Consensus 5 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 5 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp HHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred HHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHh
Confidence 44444443 3 467889999999999999998886
No 306
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.60 E-value=0.021 Score=57.77 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
++.+|++.|++||||||++..||..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999877543
No 307
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.59 E-value=0.021 Score=49.16 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+||||||+.+.|..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999985
No 308
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.58 E-value=0.012 Score=57.25 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=27.4
Q ss_pred HHHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 57 LMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 57 ~~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+.-.+ +.+.+++|.|++||||||+++.|+..+
T Consensus 160 ~l~~l~~~i-~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 160 AISAIKDGI-AIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHH-HHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHhhhhhhc-cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444444 346799999999999999999998654
No 309
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.56 E-value=0.018 Score=56.24 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=27.7
Q ss_pred HHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 58 MEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 58 ~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+|.++.---+.+.++.|.|++|||||||+..|+...
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344443212567899999999999999999999764
No 310
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.54 E-value=0.036 Score=51.98 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+.|.|++|+||||+++.+++.+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 499999999999999999999873
No 311
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.52 E-value=0.02 Score=58.65 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=27.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
..+.-|.|.|++|+|||++|+.++..++..++
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv 267 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFF 267 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence 34567999999999999999999999887665
No 312
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.51 E-value=0.025 Score=53.99 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+.+|+|.|+.||||||++..||..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998764
No 313
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.51 E-value=0.012 Score=51.86 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=21.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
..+..|+|.|.+|||||||.+.|+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999999863
No 314
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.50 E-value=0.018 Score=59.31 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=25.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+-|.|.|++|+||||+++.||..++..++
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~~~~i 93 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEARVPFI 93 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 44999999999999999999998876554
No 315
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.49 E-value=0.024 Score=47.48 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+||||||+...|..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45789999999999999999986
No 316
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.47 E-value=0.016 Score=63.01 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=27.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
+.+..|+|.|++||||||+++.||..++..++
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i 267 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFF 267 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEE
Confidence 34578999999999999999999998876654
No 317
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.46 E-value=0.018 Score=55.43 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=21.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHhc
Q psy6807 72 IVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 72 I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.|.|++|+||||+++.|+..+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 99999999999999999999653
No 318
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.44 E-value=0.022 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
.+..|+|.|.+|||||||.+.|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999985
No 319
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.36 E-value=0.027 Score=48.28 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
....|+|.|.+|||||||...|...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999853
No 320
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.32 E-value=0.027 Score=46.82 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..|+|.|.+||||||+...|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 321
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.32 E-value=0.018 Score=55.73 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=26.7
Q ss_pred ccCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 66 NQNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 66 ~~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
...+..|.|.|+||+|||++++.+++++..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 357789999999999999999999999853
No 322
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=94.31 E-value=0.38 Score=46.23 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcccc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIA 97 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~ 97 (395)
..+.|||.|| ||+|+.+.|-+.+.-.|
T Consensus 144 ~~RPvVl~GP---~k~~l~~~L~~~~P~~F 170 (308)
T 3kfv_A 144 FKRPVVILGP---VADIAMQKLTAEMPDQF 170 (308)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTE
T ss_pred CCCeEEEeCc---cHHHHHHHHHHhCcccc
Confidence 4578999999 79999999988765544
No 323
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.30 E-value=0.029 Score=46.77 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
...|+|.|.+||||||+...|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999863
No 324
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.27 E-value=0.03 Score=46.66 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+||||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999875
No 325
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.24 E-value=0.034 Score=57.48 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
..++|+|.|+.|+||||+|+.++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999999999996
No 326
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=94.24 E-value=0.35 Score=48.01 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..++|+|.||+| +|+.++|-+...-
T Consensus 231 ~~r~iVlsGPsg---~tl~~~L~~~~p~ 255 (391)
T 3tsz_A 231 FLRPVTIFGPIA---DVAREKLAREEPD 255 (391)
T ss_dssp SCCCEEEESTTH---HHHHHHHHHHCTT
T ss_pred CCCEEEEECCCH---HHHHHHHHhhCcc
Confidence 568999999998 8999999887643
No 327
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.23 E-value=0.026 Score=53.95 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
.+.+++|.|++||||||+.+.|+ .+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 36799999999999999999999 54
No 328
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.21 E-value=0.041 Score=55.40 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
...++|.|++|+||||+++.++..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999873
No 329
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.17 E-value=0.031 Score=54.32 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=24.5
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
.++.+|+|.|.+||||||++..|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999765
No 330
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.16 E-value=0.035 Score=46.70 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
++...|+|.|.+|||||||...|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999975
No 331
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.16 E-value=0.032 Score=50.43 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=22.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+.+++|.|.||+|||++|-.+|..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45789999999999999999887643
No 332
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.15 E-value=0.023 Score=57.33 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+|+|.|++||||||++..||..+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998764
No 333
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.14 E-value=0.033 Score=49.40 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
.+...|+|.|++||||||+...|...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999864
No 334
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.13 E-value=0.024 Score=49.20 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~ 91 (395)
..|+|.|.+|||||||.+.|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999985
No 335
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.13 E-value=0.029 Score=53.64 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.+|++.|++||||||++..||..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999998774
No 336
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.09 E-value=0.018 Score=59.35 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+|+|.|++||||||+++.|+..+
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356789999999999999999998654
No 337
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.09 E-value=0.032 Score=47.34 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+...|+|.|.+||||||+...|...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999998753
No 338
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.08 E-value=0.026 Score=58.89 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+..
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999854
No 339
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.07 E-value=0.027 Score=58.35 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=23.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+++.|+-.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999854
No 340
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.07 E-value=0.031 Score=55.00 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=29.2
Q ss_pred HHHHHHH-HhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 57 LMEDTED-RFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 57 ~~~~~~~-~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
-+|+.+. ---..+.++.|.|++||||||++..++..+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566665 222467899999999999999999999765
No 341
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.06 E-value=0.032 Score=47.32 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+...|+|.|.+|||||||...|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4467999999999999999999864
No 342
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.05 E-value=0.036 Score=53.96 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
.+.++.|.|+||+||||+|..++...|.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~ 149 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGG 149 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCC
Confidence 3567899999999999999999986443
No 343
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.03 E-value=0.038 Score=50.61 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+..++++.|..||||||++..|+..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998775
No 344
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.02 E-value=0.029 Score=55.23 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
.+.+++|.|++|||||||++.|+..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhcc
Confidence 4679999999999999999999853
No 345
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.00 E-value=0.026 Score=56.41 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.++.|.|++|||||||+..|+-.
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 46789999999999999999988743
No 346
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.99 E-value=0.074 Score=54.89 Aligned_cols=36 Identities=11% Similarity=0.333 Sum_probs=27.9
Q ss_pred HHHHHHHHhc---cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 57 LMEDTEDRFN---QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 57 ~~~~~~~~~~---~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..+++...+. ...++|+|.|+.|+||||+|+.++..
T Consensus 132 ~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 132 LVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp HHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred HHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 4455555553 45789999999999999999999753
No 347
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.97 E-value=0.028 Score=56.68 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=25.7
Q ss_pred HHHHHHHhccCCeE--EEEEcCCCCChHHHHHHHHH
Q psy6807 58 MEDTEDRFNQNSKI--IVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 58 ~~~~~~~~~~~~~~--I~i~G~~GsGKSTlak~La~ 91 (395)
++.++..+ +.+.+ |+|.|++|||||||.+.|+.
T Consensus 30 L~~vsl~i-~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 30 DQLVNKSV-SQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp HHHHHHSC-C-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred cCCCceEe-cCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 45555554 45667 99999999999999999985
No 348
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.95 E-value=0.034 Score=46.63 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+||||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35689999999999999999974
No 349
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.94 E-value=0.035 Score=46.89 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 45799999999999999999974
No 350
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.92 E-value=0.027 Score=58.42 Aligned_cols=26 Identities=42% Similarity=0.451 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+.+.|+-.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 46789999999999999999999864
No 351
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.92 E-value=0.024 Score=59.12 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+..
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 46789999999999999999999753
No 352
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.91 E-value=0.032 Score=48.70 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=20.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
.+...|+|.|.+||||||+.+.|..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999986
No 353
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.89 E-value=0.035 Score=46.56 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+||||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 35799999999999999999975
No 354
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.88 E-value=0.04 Score=46.07 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~ 91 (395)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5689999999999999999986
No 355
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.87 E-value=0.036 Score=57.08 Aligned_cols=28 Identities=36% Similarity=0.462 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
++++|+|.|.+||||||++..||..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999987743
No 356
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.87 E-value=0.034 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~ 91 (395)
..|+|.|.+||||||+...|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999975
No 357
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.83 E-value=0.027 Score=53.72 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
.+.+++|.|++||||||+.+.|+..
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred cCCeEEEECCCCCcHHHHHHHhccc
Confidence 3679999999999999999999853
No 358
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=93.78 E-value=0.3 Score=49.67 Aligned_cols=25 Identities=32% Similarity=0.243 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..++|+|.||+|+| +.++|-++..-
T Consensus 223 ~~r~iVlsGPsG~G---l~~~Ll~~~p~ 247 (468)
T 3shw_A 223 FLRPVTIFGPIADV---AREKLAREEPD 247 (468)
T ss_dssp SCCCEEEESTTHHH---HHHHHHHHCTT
T ss_pred CCCEEEEECCCHHH---HHHHHHHhCCC
Confidence 56899999999999 88888776543
No 359
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.77 E-value=0.036 Score=46.61 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
...|+|.|.+||||||+...|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999999853
No 360
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.76 E-value=0.036 Score=49.25 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.++-|+|.|++|+||||+|..|.++ |...+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 5678999999999999999999984 77666
No 361
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.75 E-value=0.021 Score=62.03 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
.+..++|.|++|+||||+|+.||..++..++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 45678999999999999999999999887664
No 362
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.73 E-value=0.046 Score=47.06 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
....|+|.|.+|||||||...|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999863
No 363
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.72 E-value=0.039 Score=47.75 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+...|+|.|.+||||||+...|..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999974
No 364
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.72 E-value=0.04 Score=46.33 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~ 91 (395)
..|+|.|.+||||||+...|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999963
No 365
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.71 E-value=0.041 Score=46.66 Aligned_cols=24 Identities=42% Similarity=0.375 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+...|+|.|.+|||||||...|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 346799999999999999999975
No 366
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.71 E-value=0.029 Score=58.18 Aligned_cols=26 Identities=38% Similarity=0.606 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+-.
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999853
No 367
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.71 E-value=0.038 Score=46.34 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
...|+|.|.+||||||+.+.|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999753
No 368
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.71 E-value=0.083 Score=56.72 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=30.2
Q ss_pred HHHHHHHHhc-cCCeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 57 LMEDTEDRFN-QNSKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 57 ~~~~~~~~~~-~~~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
.+.++..-+. .....++|.|++|+|||++|+.||+.+....+|
T Consensus 188 ~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p 231 (758)
T 3pxi_A 188 EIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVP 231 (758)
T ss_dssp HHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSC
T ss_pred HHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCC
Confidence 3344443332 344578999999999999999999998443333
No 369
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.70 E-value=0.025 Score=59.13 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+..
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999753
No 370
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.70 E-value=0.038 Score=54.08 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=28.3
Q ss_pred HHHHHHH--HhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 57 LMEDTED--RFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 57 ~~~~~~~--~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
-+|+.+. -+ ..+.++.|.|++||||||++..++...
T Consensus 48 ~LD~~Lg~GGl-~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 48 SLDVALGIGGL-PRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp HHHHHTSSSSE-ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCc-cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3566655 33 467899999999999999999998654
No 371
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.69 E-value=0.044 Score=55.28 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhccc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDMI 96 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~~ 96 (395)
.+++|+|.|..||||||++..||..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999877544
No 372
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.68 E-value=0.038 Score=46.32 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLA 90 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La 90 (395)
..|+|.|.+|||||||.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999999985
No 373
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.68 E-value=0.037 Score=51.96 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.++|.|++|+||||+++.+++.+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 499999999999999999999874
No 374
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.65 E-value=0.036 Score=46.97 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+||||||+...|..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45799999999999999999975
No 375
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.64 E-value=0.036 Score=58.34 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=23.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.+++|.|++||||||+.+.|+-.+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 457899999999999999999998643
No 376
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.64 E-value=0.039 Score=47.64 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
...|+|.|.+||||||++..|...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999999863
No 377
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.63 E-value=0.057 Score=51.79 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=29.0
Q ss_pred HHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 58 MEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 58 ~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+|+++.-+ ..+.+++|.|.||+||||++..+|....
T Consensus 58 LD~~lgGl-~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 58 LDRMTYGY-KRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp HHHHHSSB-CTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHhhcCCC-CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 56666444 5678999999999999999999997643
No 378
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.57 E-value=0.037 Score=57.34 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+-.
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999999853
No 379
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.51 E-value=0.042 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|++||||||+...|..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999974
No 380
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.51 E-value=0.03 Score=58.71 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+..
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 46789999999999999999999753
No 381
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.51 E-value=0.04 Score=46.11 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+||||||+...|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 45799999999999999999985
No 382
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.50 E-value=0.048 Score=46.46 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
....|+|.|.+|||||||...|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 3467999999999999999999863
No 383
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.49 E-value=0.042 Score=46.51 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
...|+|.|.+||||||+...|...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999863
No 384
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.45 E-value=0.04 Score=48.54 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
.+...|+|.|.+||||||+.+.|..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4556799999999999999999963
No 385
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.44 E-value=0.043 Score=47.60 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+...|+|.|.+|||||||...|..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHc
Confidence 346799999999999999999975
No 386
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.44 E-value=0.071 Score=50.83 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=25.7
Q ss_pred HhccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 64 RFNQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 64 ~~~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+.......|.|.|++|+|||++|+.+++...
T Consensus 20 ~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 20 MVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp HHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred HHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 3344567899999999999999999998653
No 387
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.42 E-value=0.049 Score=45.54 Aligned_cols=22 Identities=36% Similarity=0.285 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHH
Q psy6807 71 IIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~ 92 (395)
.|+|.|.+||||||+...|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 388
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.41 E-value=0.043 Score=47.01 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999985
No 389
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.40 E-value=0.047 Score=47.73 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLA 90 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La 90 (395)
++...|+|.|.+|||||||...|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999985
No 390
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.39 E-value=0.048 Score=46.92 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
...|+|.|.+||||||+...|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999753
No 391
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.39 E-value=0.041 Score=57.91 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=23.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.|||||||++.|+-.
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999999853
No 392
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.39 E-value=0.045 Score=52.68 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=24.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+.+.++.|.|++||||||++..++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 467899999999999999999999764
No 393
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.37 E-value=0.055 Score=52.61 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.++.|.|++||||||++..|+..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999975
No 394
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.35 E-value=0.045 Score=46.85 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999985
No 395
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.32 E-value=0.049 Score=47.05 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
++...|+|.|.+||||||+...|..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3557899999999999999999874
No 396
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.31 E-value=0.053 Score=54.57 Aligned_cols=28 Identities=29% Similarity=0.227 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
.+.+|+|.|+.||||||++..||..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999988754
No 397
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.31 E-value=0.046 Score=46.46 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+....|+|.|.+|||||||...|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999999753
No 398
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.29 E-value=0.056 Score=47.09 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+...|+|.|.+|||||||...|...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999853
No 399
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.29 E-value=0.053 Score=46.59 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
++...|+|.|.+||||||+...|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999975
No 400
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.28 E-value=0.043 Score=46.51 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+...|+|.|.+|||||||...|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999999863
No 401
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.27 E-value=0.066 Score=48.93 Aligned_cols=29 Identities=31% Similarity=0.311 Sum_probs=24.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..+++.+++|++||||||.+-.++.++..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~ 54 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQF 54 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 45789999999999999999888887643
No 402
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.26 E-value=0.05 Score=46.89 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
...|+|.|.+|||||||...|...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999863
No 403
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.25 E-value=0.068 Score=53.91 Aligned_cols=35 Identities=29% Similarity=0.519 Sum_probs=28.5
Q ss_pred HHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 58 MEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 58 ~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+|+++..+ ..+.+++|.|.+|+||||++..++...
T Consensus 193 LD~~~gGl-~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 193 LDRMTSGF-QRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHSSB-CTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhhcCCC-CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666444 467899999999999999999998764
No 404
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.23 E-value=0.039 Score=58.02 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|+.||||||+++.|+-.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCC
Confidence 46789999999999999999999854
No 405
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.20 E-value=0.055 Score=53.14 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=27.8
Q ss_pred HHHHHH--HhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 58 MEDTED--RFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 58 ~~~~~~--~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+|..+. -+ ..+.++.|.|++||||||+|..|+...
T Consensus 51 LD~~Lg~GGl-~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 51 LDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHTSSSSE-ETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhccCCc-cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455554 23 467899999999999999999998764
No 406
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.20 E-value=0.047 Score=55.90 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+++|.|++||||||+.+.|+-.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 7999999999999999999997653
No 407
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.19 E-value=0.026 Score=58.91 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=22.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+..
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 46789999999999999999998753
No 408
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.19 E-value=0.048 Score=46.13 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~ 91 (395)
..|+|.|.+|||||||...|..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5689999999999999999974
No 409
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.18 E-value=0.046 Score=47.22 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=22.9
Q ss_pred Hhc-cCCeEEEEEcCCCCChHHHHHHHH
Q psy6807 64 RFN-QNSKIIVVEGPIASGKTEFCKKLA 90 (395)
Q Consensus 64 ~~~-~~~~~I~i~G~~GsGKSTlak~La 90 (395)
.|. ++...|+|.|.+||||||+...|.
T Consensus 16 ~f~~~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 16 LLPADRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCTTSCEEEEEEEETTSSHHHHHHHTC
T ss_pred hccCCCceEEEEECCCCCCHHHHHHHHH
Confidence 344 567789999999999999999985
No 410
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.17 E-value=0.057 Score=46.68 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+...|+|.|.+|||||||...|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 456899999999999999999975
No 411
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.16 E-value=0.051 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.174 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999975
No 412
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.15 E-value=0.053 Score=53.03 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=25.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.++.+++|.|++||||||+.+.|+....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4688999999999999999999998653
No 413
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.14 E-value=0.075 Score=50.18 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
.-|++.||||+|||+++..||..++.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 36999999999999999999997654
No 414
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.12 E-value=0.064 Score=46.71 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+...|+|.|.+|||||||...|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999863
No 415
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.12 E-value=0.055 Score=54.65 Aligned_cols=36 Identities=8% Similarity=-0.025 Sum_probs=28.4
Q ss_pred HHHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 57 LMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 57 ~~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.++.+ -.+ .++.+++|.|++|||||||++.|+....
T Consensus 147 vld~v-l~i-~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 147 AINAL-LTV-GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp HHHHH-SCC-BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEeee-EEe-cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 44555 333 4688999999999999999999998653
No 416
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.10 E-value=0.049 Score=57.32 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+++|.|+.|||||||++.|+-.
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhcC
Confidence 367999999999999999999853
No 417
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.10 E-value=0.051 Score=47.07 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 45799999999999999999986
No 418
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.09 E-value=0.086 Score=56.49 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=29.4
Q ss_pred HHHHHHHHhc-cCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 57 LMEDTEDRFN-QNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 57 ~~~~~~~~~~-~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
.+.++...+. .....++|.|++|+||||+++.|++.+..
T Consensus 194 ~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 194 ELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp HHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3444444443 35567899999999999999999998844
No 419
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.09 E-value=0.046 Score=46.93 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~ 91 (395)
..|+|.|.+||||||+...|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999974
No 420
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.08 E-value=0.059 Score=47.06 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
....|+|.|.+|||||||...|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567999999999999999999763
No 421
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.08 E-value=0.047 Score=46.61 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+...|+|.|.+|||||||...|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346799999999999999999984
No 422
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.07 E-value=0.063 Score=46.97 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=21.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
++...|+|.|.+|||||||...|..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3457899999999999999999975
No 423
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.06 E-value=0.04 Score=57.75 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=25.3
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
..+..+.|.|++||||||+++.|+..++.
T Consensus 58 ~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 58 NQKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 34579999999999999999999997754
No 424
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.04 E-value=0.049 Score=46.62 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
...|+|.|.+|||||||...|...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999753
No 425
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.03 E-value=0.054 Score=46.03 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+||||||+...|..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 35799999999999999999975
No 426
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.02 E-value=0.066 Score=46.51 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+...|+|.|.+|||||||...|..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999988875
No 427
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.02 E-value=0.06 Score=48.42 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
.+...|+|.|.+|||||||...|..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999974
No 428
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.01 E-value=0.057 Score=47.33 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+...|+|.|.+|||||||...|...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 4567999999999999999999863
No 429
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.00 E-value=0.034 Score=57.16 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
+..|.|.|+||+|||++|+.||..++
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 46899999999999999999999774
No 430
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.00 E-value=0.067 Score=46.30 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
....|+|.|.+|||||||...|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 346799999999999999999976
No 431
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.00 E-value=0.069 Score=45.43 Aligned_cols=24 Identities=25% Similarity=0.077 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
....|+|.|.+||||||+...|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999999985
No 432
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.94 E-value=0.058 Score=49.02 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
....|+|.|.+||||||+...|..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHcC
Confidence 457899999999999999999974
No 433
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.93 E-value=0.034 Score=58.15 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=23.0
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|.|++||||||+++.|+..
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999753
No 434
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.93 E-value=0.05 Score=55.98 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=25.1
Q ss_pred HHHHHH-HhccCCeEEEEEcCCCCChHHHHHHH
Q psy6807 58 MEDTED-RFNQNSKIIVVEGPIASGKTEFCKKL 89 (395)
Q Consensus 58 ~~~~~~-~~~~~~~~I~i~G~~GsGKSTlak~L 89 (395)
++.++- .+ ..+.+++|.|++|||||||++.+
T Consensus 28 Ld~i~~G~i-~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 28 FDDISHGGL-PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp HHHHTTSSE-ETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHhcCCCC-CCCeEEEEEcCCCCCHHHHHHHH
Confidence 455554 44 45789999999999999999994
No 435
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.91 E-value=0.051 Score=46.73 Aligned_cols=27 Identities=33% Similarity=0.230 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
...|+|.|.+|||||||.+.|...+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 357999999999999999888765443
No 436
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.87 E-value=0.061 Score=49.44 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=21.4
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
.....|+|.|.+||||||+...|..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999999974
No 437
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.86 E-value=0.049 Score=47.85 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLA 90 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La 90 (395)
....|+|.|.+|||||||.+.|.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999985
No 438
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.86 E-value=0.065 Score=47.31 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+...|+|.|.+|||||||...|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 439
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.79 E-value=0.063 Score=46.49 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
....|+|.|.+|||||||...|..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999864
No 440
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.78 E-value=0.07 Score=46.32 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
....|+|.|.+|||||||...|...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3467999999999999999999863
No 441
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.78 E-value=0.061 Score=46.46 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 35799999999999999999985
No 442
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.77 E-value=0.076 Score=46.48 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
....|+|.|.+|+|||||...|...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999854
No 443
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.76 E-value=0.06 Score=51.45 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=26.9
Q ss_pred HHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 58 MEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 58 ~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+|+.+.---+.+.++.|.|++||||||++..++..
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34444321246789999999999999999999975
No 444
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.71 E-value=0.078 Score=45.12 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
..+.+|.|+.||||||+...|.=.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998655
No 445
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.70 E-value=0.071 Score=52.00 Aligned_cols=35 Identities=11% Similarity=0.317 Sum_probs=28.5
Q ss_pred HHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 58 MEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 58 ~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+|+.+.-+ ..+-+|+|.|.||+||||++..+|...
T Consensus 36 LD~~~gGl-~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 36 LDNYTSGF-NKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp HHHHHCSB-CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45666544 467899999999999999999998764
No 446
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.70 E-value=0.064 Score=46.33 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999975
No 447
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.66 E-value=0.06 Score=50.11 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.|+|.|.+|||||||...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999999753
No 448
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.65 E-value=0.067 Score=46.39 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
....|+|.|.+|||||||...|...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC
Confidence 3467999999999999999999864
No 449
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.64 E-value=0.042 Score=59.67 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHHhccccCC
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADELDMIALP 99 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~l~~~~~~ 99 (395)
++-|.+.||||+|||.+|+.+|.+++..++.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~ 541 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEE
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEE
Confidence 4568999999999999999999999998874
No 450
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.60 E-value=0.064 Score=46.10 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+...|+|.|.+|||||||...|..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999985
No 451
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.60 E-value=0.025 Score=54.57 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
.+.+++|.|++|||||||.+.|+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 4689999999999999999999753
No 452
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.58 E-value=0.065 Score=47.25 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 35799999999999999999986
No 453
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.55 E-value=0.062 Score=46.73 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
...|+|.|.+|||||||...|...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999999753
No 454
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.54 E-value=0.068 Score=46.39 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+...|+|.|.+|||||||...|...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3467999999999999999999863
No 455
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.51 E-value=0.076 Score=46.82 Aligned_cols=25 Identities=28% Similarity=0.157 Sum_probs=21.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
.+...|+|.|.+||||||+...|..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHh
Confidence 3457899999999999999999985
No 456
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.50 E-value=0.058 Score=51.42 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
++..|+|.|.+|||||||.+.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHC
Confidence 356899999999999999999975
No 457
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.48 E-value=0.074 Score=56.97 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=25.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhccccC
Q psy6807 71 IIVVEGPIASGKTEFCKKLADELDMIAL 98 (395)
Q Consensus 71 ~I~i~G~~GsGKSTlak~La~~l~~~~~ 98 (395)
.+.+.|++|+|||++|+.||+.++..++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~ 517 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence 6999999999999999999999976554
No 458
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.48 E-value=0.084 Score=46.27 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
....|+|.|.+|||||||...|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999975
No 459
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.46 E-value=0.066 Score=46.99 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
...|+|.|.+|||||||...|...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999863
No 460
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.43 E-value=0.076 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|++|||||||...|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 46799999999999999999974
No 461
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.41 E-value=0.082 Score=46.03 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=20.9
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
.....|+|.|.+|||||||...|..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 3456899999999999999999974
No 462
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.41 E-value=0.075 Score=45.72 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
...|+|.|.+|||||||...|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999753
No 463
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.40 E-value=0.076 Score=47.13 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
....|+|.|.+|||||||...|..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999999986
No 464
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.39 E-value=0.065 Score=45.57 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
...|+|.|.+|||||||...|...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999863
No 465
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.37 E-value=0.077 Score=46.00 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 35799999999999999999985
No 466
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.32 E-value=0.07 Score=46.57 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999874
No 467
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.31 E-value=0.085 Score=57.53 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=28.1
Q ss_pred HHHHHHHHhc-cCCeEEEEEcCCCCChHHHHHHHHHHhc
Q psy6807 57 LMEDTEDRFN-QNSKIIVVEGPIASGKTEFCKKLADELD 94 (395)
Q Consensus 57 ~~~~~~~~~~-~~~~~I~i~G~~GsGKSTlak~La~~l~ 94 (395)
.+.++...+. .....++|.|++|+||||+++.||+.+.
T Consensus 178 ~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 178 EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp HHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3444444332 2345689999999999999999999873
No 468
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.27 E-value=0.084 Score=55.10 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
...+++|.|++|+||||++..|+..+..
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3579999999999999999999886643
No 469
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.25 E-value=0.1 Score=52.46 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=28.4
Q ss_pred HHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 58 MEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 58 ~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+|+.+.-+ ..+.+++|.|.||+||||++..+|...
T Consensus 190 LD~~lgGl-~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 190 LDQLIGTL-GPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHCCC-CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhcCCc-CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46666444 457899999999999999999999754
No 470
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.25 E-value=0.064 Score=46.38 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+...|+|.|.+|||||||...|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999754
No 471
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.20 E-value=0.073 Score=58.93 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=22.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.+.+++|.|+.|||||||.+.|+.
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3678999999999999999999994
No 472
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.15 E-value=0.074 Score=46.62 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999975
No 473
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.13 E-value=0.072 Score=50.81 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+.-|+|.|++|||||||.+.|+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 45679999999999999999863
No 474
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=92.05 E-value=0.079 Score=57.51 Aligned_cols=26 Identities=19% Similarity=0.507 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+.+++|+|+.||||||+.+.++-.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 45789999999999999999999864
No 475
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.01 E-value=0.078 Score=46.97 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
...|+|.|.+|||||||...|...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999999863
No 476
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.01 E-value=0.076 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 45799999999999999999974
No 477
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.00 E-value=0.087 Score=54.13 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=24.1
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
..+.+++|.|++||||||+++.|+..+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999754
No 478
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.95 E-value=0.096 Score=52.89 Aligned_cols=35 Identities=17% Similarity=0.380 Sum_probs=28.7
Q ss_pred HHHHHHHhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 58 MEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 58 ~~~~~~~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+|+.+.-+ ..+.+|+|.|.||+||||++-.+|...
T Consensus 187 LD~~lgGl-~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 187 LDRMTYGY-KRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp HHHHHSSB-CSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHhhcCCC-CCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 46666544 467899999999999999999998765
No 479
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.94 E-value=0.081 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999964
No 480
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.86 E-value=0.079 Score=46.50 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||.+.|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 46799999999999999999974
No 481
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.79 E-value=0.053 Score=46.37 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=10.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999874
No 482
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.77 E-value=0.096 Score=46.53 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
+...|+|.|.+|||||||...|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 456799999999999999999974
No 483
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=91.75 E-value=0.11 Score=51.20 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.2
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
++...|.|.|..||||||+++.+.-.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~ 56 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRII 56 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHH
Confidence 45678999999999999999999643
No 484
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=91.68 E-value=0.096 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
.+.|+|.|.+|||||||.+.|..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTG 201 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHC
Confidence 35699999999999999999984
No 485
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.65 E-value=0.095 Score=45.35 Aligned_cols=24 Identities=33% Similarity=0.235 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
...|+|.|.+||||||+...|...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999864
No 486
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.58 E-value=0.11 Score=51.23 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=27.8
Q ss_pred HHHHHH--HhccCCeEEEEEcCCCCChHHHHHHHHHHh
Q psy6807 58 MEDTED--RFNQNSKIIVVEGPIASGKTEFCKKLADEL 93 (395)
Q Consensus 58 ~~~~~~--~~~~~~~~I~i~G~~GsGKSTlak~La~~l 93 (395)
+|..+. -+ ..+.+|.|.|++||||||+|..++...
T Consensus 62 LD~~Lg~GGl-~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 62 LDLALGVGGI-PRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp HHHHTSSSSE-ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHhCCCCc-cCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 455554 33 457899999999999999999988764
No 487
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=91.51 E-value=0.11 Score=51.84 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.6
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
.++..|+|.|++||||||+.+.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3467999999999999999999986
No 488
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=91.49 E-value=0.068 Score=56.19 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~ 91 (395)
..|+|.|++||||||+.+.|+.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHS
T ss_pred CeEEEECCCCChHHHHHHHHhC
Confidence 4699999999999999999984
No 489
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.49 E-value=0.098 Score=46.23 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 35799999999999999999874
No 490
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.47 E-value=0.097 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 46799999999999999999975
No 491
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.39 E-value=0.11 Score=47.70 Aligned_cols=24 Identities=13% Similarity=0.347 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTlak~La~ 91 (395)
....|+|.|.+||||||++..|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 457899999999999999999864
No 492
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.33 E-value=0.17 Score=47.10 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g 48 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCHHHHHHHHHC
Confidence 35799999999999999999963
No 493
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.33 E-value=0.11 Score=45.36 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=20.8
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
++...|+|.|.+|||||||.+.|...
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc
Confidence 34568999999999999999877653
No 494
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=91.30 E-value=0.23 Score=55.21 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=28.9
Q ss_pred hHHHHHHHHh---ccCCeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 56 TLMEDTEDRF---NQNSKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 56 ~~~~~~~~~~---~~~~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
..++++...+ ....++|+|.|+.|+||||||+.++..
T Consensus 131 ~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 131 KLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp HHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 3455555555 356789999999999999999998865
No 495
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.24 E-value=0.15 Score=48.19 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=24.7
Q ss_pred cCCeEEEEEcCCCCChHHHHHHHHHHhcc
Q psy6807 67 QNSKIIVVEGPIASGKTEFCKKLADELDM 95 (395)
Q Consensus 67 ~~~~~I~i~G~~GsGKSTlak~La~~l~~ 95 (395)
+.+++|+|.|-.|+||||++..||..|..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~ 67 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI 67 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH
Confidence 46789999999999999999999987744
No 496
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.24 E-value=0.13 Score=45.29 Aligned_cols=23 Identities=26% Similarity=0.029 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~ 91 (395)
...|+|.|.+|||||||...|..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999985
No 497
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.17 E-value=0.13 Score=48.22 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
...|+|.|.+|||||||...|...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999753
No 498
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=91.16 E-value=0.09 Score=57.35 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=17.7
Q ss_pred CCeEEEEEcCCCCChHHHH
Q psy6807 68 NSKIIVVEGPIASGKTEFC 86 (395)
Q Consensus 68 ~~~~I~i~G~~GsGKSTla 86 (395)
..++++|+|.+||||||||
T Consensus 35 ~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 35 RDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp SSSEEEEESSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4689999999999999998
No 499
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.16 E-value=0.1 Score=52.36 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHH
Q psy6807 70 KIIVVEGPIASGKTEFCKKLAD 91 (395)
Q Consensus 70 ~~I~i~G~~GsGKSTlak~La~ 91 (395)
.-|+|.|++|||||||.+.|+.
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCcHHHHHHHHhC
Confidence 4579999999999999999974
No 500
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.11 E-value=0.11 Score=56.10 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCChHHHHHHHHHH
Q psy6807 69 SKIIVVEGPIASGKTEFCKKLADE 92 (395)
Q Consensus 69 ~~~I~i~G~~GsGKSTlak~La~~ 92 (395)
+.+++|+|+.||||||+.+.++--
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 689999999999999999999864
Done!