RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6807
(395 letters)
>gnl|CDD|238988 cd02030, NDUO42, NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is
a family of proteins that are highly similar to
deoxyribonucleoside kinases (dNK). Members of this
family have been identified as one of the subunits of
NADH:Ubiquinone oxioreductase (complex I), a
multi-protein complex located in the inner mitochondrial
membrane. The main function of the complex is to
transport electrons from NADH to ubiquinone, which is
accompanied by the translocation of protons from the
mitochondrial matrix to the inter membrane space.
Length = 219
Score = 246 bits (631), Expect = 9e-81
Identities = 98/227 (43%), Positives = 137/227 (60%), Gaps = 10/227 (4%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYD 130
+I V+G IASGK + K+LA++L M P A + D + LD ++ +
Sbjct: 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAG-IHYLDSTTGDGKPLDPAFN----GNCS 55
Query: 131 EKTFCKDPK--HFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAM 188
+ F DPK ++ Q M R Y DAL H+LSTGQG +++R PFSDF+F+EAM
Sbjct: 56 LEKFYDDPKSNDGNSYRLQSWMYSSRLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAM 115
Query: 189 DKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFN 248
K GYI K+ D Y E+ T+P L PHLVIYLD+PV +V++ +KKR +P E+
Sbjct: 116 YKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRIKKRGDPHEMK---VT 172
Query: 249 DKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295
YL +IE+ YK +LP+IS+ SE+L YDW++ GD E VVEDIE +
Sbjct: 173 SAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVVEDIEYLK 219
>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA.
Length = 193
Score = 144 bits (366), Expect = 1e-41
Identities = 75/225 (33%), Positives = 104/225 (46%), Gaps = 32/225 (14%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYD 130
+IVVEG I +GK+ K+LA+ L +P N +
Sbjct: 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVEPDV----------------EGNP--FL 42
Query: 131 EKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDK 190
EK F +DPK FQ+ L R Y DAL H LSTGQG I++R FSD +F EA K
Sbjct: 43 EK-FYEDPKR-WAFPFQLYFLLSRLKQYKDALEH-LSTGQGVILERSIFSDRVFAEANLK 99
Query: 191 CGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDK 250
G I K D+Y E+ +P L P LVIYLD + +KKR P E
Sbjct: 100 EGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRGRPEEQG---IPLD 156
Query: 251 YLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERID 295
YL ++ + Y+ +LPQ+ + + +L+ D ++ DIE
Sbjct: 157 YLEDLHEAYEKWFLPQMYEKAPVLIIDANE--------ADIEYNK 193
>gnl|CDD|216657 pfam01712, dNK, Deoxynucleoside kinase. This family consists of
various deoxynucleoside kinases cytidine EC:2.7.1.74,
guanosine EC:2.7.1.113, adenosine EC:2.7.1.76 and
thymidine kinase EC:2.7.1.21 (which also phosphorylates
deoxyuridine and deoxycytosine.) These enzymes catalyze
the production of deoxynucleotide 5'-monophosphate from
a deoxynucleoside. Using ATP and yielding ADP in the
process.
Length = 146
Score = 61.6 bits (150), Expect = 1e-11
Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 25/167 (14%)
Query: 146 FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSD-FIFIEAMDKCGYITKRHKDIYYE 204
Q L RF + A + I++R +SD +IF + + G ++ Y E
Sbjct: 1 LQTYFLNSRFKQQLSAA-----RDEVVILERSIYSDRYIFAKNLYDKGTMSDEEYKTYKE 55
Query: 205 ITRFTLP-PLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYKNNY 263
+ L +P L+IYL + E +KKR E N YL +
Sbjct: 56 LYDNMLRQLPKRPDLIIYLKVSPETCLERIKKRGRTEEKNIE---LDYLELLHSEK---- 108
Query: 264 LPQISDSSELLVYDWSDGGDPEVVVEDIERIDFD-HYDHFSNKMREW 309
++ V+V D +++DF + NK E
Sbjct: 109 ----------YEKWYTKYNASPVLVIDGDKLDFVEDEEDIMNKRNEI 145
>gnl|CDD|224345 COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and
metabolism].
Length = 216
Score = 54.6 bits (132), Expect = 1e-08
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 34/198 (17%)
Query: 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKS 128
+ +IV+EG I +GK+ + LA+ L +FY E +N
Sbjct: 4 AMVIVIEGMIGAGKSTLAQALAEHLGF--------KVFY------------ELVEDN--P 41
Query: 129 YDEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSD-FIFIEA 187
+ + F +DP+ + QI L RF AL + + I+ R F D F+F +
Sbjct: 42 FLDL-FYEDPERY-AFLLQIYFLLNRFKKIKKAL-----SDKNNILDRSIFEDYFLFAKL 94
Query: 188 MDKCGYITKRHKDIY---YEITRFTLPPL-FKPHLVIYLDIPVSKVKENVKKRNNPWEVN 243
G ++ Y Y+ LP L +P L+IYLD + + + KR P+E++
Sbjct: 95 NFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFEID 154
Query: 244 SPIFNDKYLHEIEDLYKN 261
+ N YL ++ Y +
Sbjct: 155 NFDENKDYLKDLHRRYDD 172
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 41.9 bits (98), Expect = 6e-05
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYK--------RGDFDWRSLDAEWS 122
II++ GP SGK+ KKLA++L +P ++D + G+ D +D E
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLG---IPVISLDDLLREEGLAELDDGELDDIDIDLELL 57
Query: 123 NENLKSYDEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDA 161
E L ++ + D T ++R+ + V++D
Sbjct: 58 EEILDELAKQEWVIDGVREST--LELRLEEADLVVFLDL 94
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 38.1 bits (89), Expect = 4e-04
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 71 IIVVEGPIASGKTEFCKKLADEL 93
II + G SGK+ KKLA++L
Sbjct: 1 IIAITGGSGSGKSTVAKKLAEQL 23
>gnl|CDD|161676 TIGR00041, DTMP_kinase, thymidylate kinase. Function:
phosphorylation of DTMP to form DTDP in both de novo and
salvage pathways of DTTP synthesis. Catalytic activity:
ATP + thymidine 5'-phosphate = ADP + thymidine
5'-diphosphate [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 195
Score = 38.5 bits (90), Expect = 0.002
Identities = 40/176 (22%), Positives = 57/176 (32%), Gaps = 36/176 (20%)
Query: 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKR--GDFDW-RSLDAEWSNE 124
IV+EG +GKT L L D+ + R G + NE
Sbjct: 2 RGMFIVIEGIDGAGKTTQANLLKKLL-----QENGYDVLFTREPGGTPIGEKIRELLLNE 56
Query: 125 NLKSYDEKT----FCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFS 180
N + +K F D +H H D + L+ G+ I R FS
Sbjct: 57 NDEPLTDKAEALLFAAD-RHEHL---------------EDKIKPALAEGKLVISDRYVFS 100
Query: 181 DFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKR 236
+ G +D+ E+ P L IYLDI E ++KR
Sbjct: 101 SIAY------QGGARGIDEDLVLELNEDA--LGDMPDLTIYLDIDPEVALERLRKR 148
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 34.3 bits (79), Expect = 0.030
Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 11/89 (12%)
Query: 72 IVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYDE 131
I++ G SGKT K+LA+ L + D+ + G L E E
Sbjct: 1 ILITGTPGSGKTTLAKELAERLGDVLR-----DLAKENG------LVLELDEEITDESKR 49
Query: 132 KTFCKDPKHFHTIAFQIRMLQLRFSVYVD 160
K K + I L +V +D
Sbjct: 50 LDEDKLAKLLDKLEKIIEELAEGENVIID 78
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 217
Score = 33.9 bits (78), Expect = 0.093
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMIAL 98
II ++GP +GK+ K +A++L L
Sbjct: 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYL 31
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 32.8 bits (76), Expect = 0.11
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 71 IIVVEGPIASGKTEFCKKLADEL 93
II ++GP SGK+ K LA +L
Sbjct: 1 IIAIDGPAGSGKSTVAKLLAKKL 23
>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like)
is a family of proteins highly similar to the uridine
monophosphate kinase (UMPK, EC 2.7.1.48), also known as
uridine kinase or uridine-cytidine kinase (UCK).
Length = 179
Score = 33.4 bits (77), Expect = 0.11
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMIALPPA--NMDMFYKR--------GDFDW-RSLDA 119
++ + GP SGKT F KKL+++L + + P ++D +Y G++D+ LD
Sbjct: 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDL 60
Query: 120 EWSNENLK 127
+ N+NL
Sbjct: 61 DLLNKNLH 68
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 32.6 bits (75), Expect = 0.12
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94
+ + I V+ G SGKT ++LA +L
Sbjct: 2 RGAGIGVLTGESGSGKTTLLRRLARQLP 29
>gnl|CDD|224533 COG1618, COG1618, Predicted nucleotide kinase [Nucleotide
transport and metabolism].
Length = 179
Score = 32.3 bits (74), Expect = 0.26
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 72 IVVEGPIASGKTEFCKKLADEL 93
I + G GKT K+A++L
Sbjct: 8 IFITGRPGVGKTTLVLKIAEKL 29
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism].
Length = 218
Score = 32.3 bits (74), Expect = 0.29
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 16/71 (22%)
Query: 71 IIVVEGPIASGKTEFCKKLADEL--DMIALPPANMDMFYK---------RGDFDW---RS 116
II + G SGKT K+L+++L + + + +D +YK R ++ +
Sbjct: 10 IIGIAGGSGSGKTTVAKELSEQLGVEKVVVIS--LDDYYKDQSHLPFEERNKINYDHPEA 67
Query: 117 LDAEWSNENLK 127
D + E+LK
Sbjct: 68 FDLDLLIEHLK 78
>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 32.3 bits (74), Expect = 0.29
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 199 KDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDL 258
D + F P KP L +YLD+P E ++KR + +D++L ++ +
Sbjct: 112 LDWVLALNEF-APGGLKPDLTLYLDVPPEVALERIRKRGELRDRF-EKEDDEFLEKVREG 169
Query: 259 YKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFDH 298
Y ++V D S E V E+I +I +
Sbjct: 170 YLEL---AAKFPERIIVIDASR--PLEEVHEEILKILKER 204
Score = 28.8 bits (65), Expect = 4.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 67 QNSKIIVVEGPIASGKTEFCKKLADELD 94
IV+EG +GKT + L + L+
Sbjct: 1 MKGMFIVIEGIDGAGKTTQAELLKERLE 28
>gnl|CDD|216999 pfam02367, UPF0079, Uncharacterized P-loop hydrolase UPF0079.
This uncharacterized family contains a P-loop.
Length = 123
Score = 31.1 bits (71), Expect = 0.31
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 69 SKIIVVEGPIASGKTEFCKKLADELD 94
++++ G + +GKT F + LA L
Sbjct: 15 GDVVLLSGDLGAGKTTFVRGLAQGLG 40
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as
thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de novo
or salvage biosynthesis of thymidine triphosphate (TTP).
Length = 200
Score = 32.2 bits (74), Expect = 0.32
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 9/71 (12%)
Query: 170 QGAIV--QRCPFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVS 227
+G IV R S + G + + + KP L I LDI
Sbjct: 85 RGKIVLSDRFVDSSLAY------QGAGRGLGEALIEALNDLATG-GLKPDLTILLDIDPE 137
Query: 228 KVKENVKKRNN 238
++ R
Sbjct: 138 VGLARIEARGR 148
Score = 30.7 bits (70), Expect = 0.96
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 70 KIIVVEGPIASGKTEFCKKLADEL 93
IV EG +GKT + LA+ L
Sbjct: 1 MFIVFEGIDGAGKTTLIELLAERL 24
>gnl|CDD|223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 32.2 bits (74), Expect = 0.34
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMIAL 98
II ++GP SGK+ K LA++L L
Sbjct: 6 IIAIDGPAGSGKSTVAKILAEKLGFHYL 33
>gnl|CDD|226322 COG3800, COG3800, Predicted transcriptional regulator [General
function prediction only].
Length = 332
Score = 32.3 bits (74), Expect = 0.36
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 141 FHTIA----FQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITK 196
F A + I +L+ RF V + AH LST Q + P F F+ +D+ G I+K
Sbjct: 142 FLAAAERLRYDIELLRSRFGVSFEQAAHRLSTLQRPGQRGVP---FFFVR-IDRAGNISK 197
Query: 197 RHKDIYYEITRF 208
R + +RF
Sbjct: 198 RQSATGFHFSRF 209
>gnl|CDD|216936 pfam02223, Thymidylate_kin, Thymidylate kinase.
Length = 186
Score = 31.9 bits (73), Expect = 0.40
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 212 PLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLY 259
P KP L LD+ + +++R E +L ++ + Y
Sbjct: 115 PGPKPDLTFLLDVDPEVALKRLRRRGELDE--FEFEQLDFLRKVRERY 160
>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate
transferase; Reviewed.
Length = 307
Score = 32.0 bits (74), Expect = 0.49
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELD 94
K+IV+ GP ASGKT +LA L+
Sbjct: 5 KVIVIVGPTASGKTALAIELAKRLN 29
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain
only a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 30.7 bits (70), Expect = 0.56
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMI 96
+I++ G SGK+ F ++L EL +
Sbjct: 1 LILMVGLPGSGKSTFARRLLRELGAV 26
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 31.5 bits (72), Expect = 0.80
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 76 GPIASGKTEFCKKLADEL--DMIALPPANM 103
GP GKTE K LA+ L D AL +M
Sbjct: 528 GPTGVGKTELAKALAEALFGDEQALIRIDM 557
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 30.2 bits (69), Expect = 1.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 71 IIVVEGPIASGKTEFCKKLADELD 94
II + GP SGKT + LA++L
Sbjct: 2 IITISGPPGSGKTTVARLLAEKLG 25
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 30.0 bits (67), Expect = 1.1
Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 10/122 (8%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSY 129
++I++ GP SGKT + LA EL P + Y G+ L+ L
Sbjct: 3 EVILIVGPPGSGKTTLARALARELG-----PPGGGVIYIDGE---DILEEVLDQLLLIIV 54
Query: 130 DEKTFCKDPKHFHTIAFQIRMLQLRFSVY-VDALAHMLSTGQGAIVQRCPFSDFIFIEAM 188
K + +A +L+ V +D + +L Q A++ + +
Sbjct: 55 GGKKASGSGELRLRLALA-LARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKS 113
Query: 189 DK 190
+K
Sbjct: 114 EK 115
>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 30.3 bits (69), Expect = 1.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 70 KIIVVEGPIASGKTEFCKKLAD 91
II + G I SGK+ K LA+
Sbjct: 3 LIIGLTGGIGSGKSTVAKILAE 24
>gnl|CDD|234814 PRK00698, tmk, thymidylate kinase; Validated.
Length = 205
Score = 30.2 bits (69), Expect = 1.4
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 203 YEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNP 239
+ F L F+P L +YLD+P ++ R
Sbjct: 116 LALNDFALGG-FRPDLTLYLDVPPEVGLARIRARGEL 151
Score = 27.8 bits (63), Expect = 6.9
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 68 NSKIIVVEGPIASGKTEFCKKLADEL 93
I +EG +GK+ + L + L
Sbjct: 2 RGMFITIEGIDGAGKSTQIELLKELL 27
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain. FH proteins control
rearrangements of the actin cytoskeleton, especially in
the context of cytokinesis and cell polarisation.
Members of this family have been found to interact with
Rho-GTPases, profilin and other actin-assoziated
proteins. These interactions are mediated by the
proline-rich FH1 domain, usually located in front of FH2
(but not listed in SMART). Despite this cytosolic
function, vertebrate formins have been assigned
functions within the nucleus. A set of Formin-Binding
Proteins (FBPs) has been shown to bind FH1 with their WW
domain.
Length = 392
Score = 30.4 bits (69), Expect = 1.5
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 297 DHYDHFSNKMREWRQLTTKEWNNLRMLYADEKSDLMTAFNTVERY 341
+ D F M+ + + ++++ L+ + SDL T F + Y
Sbjct: 266 NLDDKFIEVMKPFLKAAKEKYDKLQK----DLSDLKTRFEKLVEY 306
>gnl|CDD|239926 cd04480, RPA1_DBD_A_like, RPA1_DBD_A_like: A subgroup of
uncharacterized plant OB folds with similarity to the
second OB fold, the ssDNA-binding domain (DBD)-A, of
human RPA1 (also called RPA70). RPA1 is the large
subunit of Replication protein A (RPA). RPA is a nuclear
ssDNA-binding protein (SSB) which appears to be involved
in all aspects of DNA metabolism including replication,
recombination, and repair. RPA also mediates specific
interactions of various nuclear proteins. In animals,
plants, and fungi, RPA is a heterotrimer with subunits
of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In
addition to DBD-A, RPA1 contains three other OB folds:
DBD-B, DBD-C, and RPA1N. The major DNA binding activity
of RPA is associated with DBD-A and DBD-B of RPA1. RPA1
DBD-C is involved in trimerization. The ssDNA-binding
mechanism is believed to be multistep and to involve
conformational change.
Length = 86
Score = 28.4 bits (64), Expect = 1.5
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 306 MREWRQLTTKEWNNLRMLYADEKSDLMTAF 335
+R W +L M+ DEK + + A
Sbjct: 7 LRLWDVYNNASGESLEMVLVDEKGNRIHAT 36
>gnl|CDD|221955 pfam13173, AAA_14, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily.
Length = 127
Score = 29.1 bits (66), Expect = 1.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 68 NSKIIVVEGPIASGKTEFCKKLADEL 93
N+KIIV+ GP GKT + EL
Sbjct: 1 NNKIIVITGPRQVGKTTLLLQFLKEL 26
>gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This Pfam entry
includes some of the AAA proteins not detected by the
pfam00004 model.
Length = 168
Score = 29.5 bits (67), Expect = 1.8
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 72 IVVEGPIASGKTEFCKKLADELDMIALPPANMDM 105
+ GP GKTE K LA+ L +DM
Sbjct: 6 FLFLGPTGVGKTELAKALAELLFGDERALIRIDM 39
>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins
in this family are believed to be cytidylate kinase.
Members of this family are found in the archaea and in
spirochaetes, and differ considerably from the common
bacterial form of cytidylate kinase described by
TIGR00017.
Length = 171
Score = 29.3 bits (66), Expect = 2.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 71 IIVVEGPIASGKTEFCKKLADEL 93
II + GP SGKT K LA++L
Sbjct: 2 IITISGPPGSGKTTVAKILAEKL 24
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 29.6 bits (67), Expect = 2.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 71 IIVVEGPIASGKTEFCKKLADEL 93
+I + G SGKT ++LA+ L
Sbjct: 2 VITISGLPGSGKTTVARELAEHL 24
>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction
only].
Length = 187
Score = 29.4 bits (66), Expect = 2.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 72 IVVEGPIASGKTEFCKKLADE 92
IVV GP+ +GKT F + L+D+
Sbjct: 13 IVVIGPVGAGKTTFVRALSDK 33
>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
also known as uridine kinase or uridine-cytidine kinase
(UCK), catalyzes the reversible phosphoryl transfer from
ATP to uridine or cytidine to yield UMP or CMP. In the
primidine nucleotide-salvage pathway, this enzyme
combined with nucleoside diphosphate kinases further
phosphorylates UMP and CMP to form UTP and CTP. This
kinase also catalyzes the phosphorylation of several
cytotoxic ribonucleoside analogs such as 5-flurrouridine
and cyclopentenyl-cytidine.
Length = 198
Score = 29.4 bits (67), Expect = 2.2
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 71 IIVVEGPIASGKTEFCKKLADELD--MIALPPANMDMFYKRGDFDWRSLDAEWSNENLKS 128
II + G SGKT +++ ++L + + D +YK L E E +
Sbjct: 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIIS--QDSYYK-------DLSHEELEERKNN 51
Query: 129 -YDE 131
YD
Sbjct: 52 NYDH 55
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 28.5 bits (64), Expect = 2.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 70 KIIVVEGPIASGKTEFCKKLADEL 93
I++V GP SGKT +KL + L
Sbjct: 1 PIVLVVGPKDSGKTTLIRKLLNYL 24
>gnl|CDD|237730 PRK14493, PRK14493, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MoaE;
Provisional.
Length = 274
Score = 29.6 bits (67), Expect = 3.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELD 94
K++ + G A+GKT ++L D L
Sbjct: 2 KVLSIVGYKATGKTTLVERLVDRLS 26
>gnl|CDD|217823 pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes
2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is
required for propionate catabolism. It catalyzes the
third step of the 2-methylcitric acid cycle.
Length = 445
Score = 29.6 bits (67), Expect = 3.1
Identities = 13/58 (22%), Positives = 16/58 (27%), Gaps = 12/58 (20%)
Query: 26 VARFISSKHNADLRRPPPYPYETRDFKFP-----------WTLMEDTEDRFNQNSKII 72
+R PP ET D P L ED ED + +I
Sbjct: 295 EIETFEVAIRIINKRGPPANPETADHSLPYIIAVALLYGELAL-EDYEDEVLADPRID 351
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 29.6 bits (67), Expect = 3.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 69 SKIIVVEGPIASGKTEFCKKLADEL 93
++I + GP GKT F K LA +
Sbjct: 367 GEVIGILGPNGIGKTTFVKLLAGVI 391
>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 29.0 bits (66), Expect = 3.2
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 66 NQNSKIIVVEGPIASGKTEFCKKLADEL--DMIALPPANMDMFYK 108
+ II + G SGKT + +EL + IA+ P D +YK
Sbjct: 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIP--QDSYYK 45
>gnl|CDD|219519 pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after
Kidins220/ARMS and PifA) family of predicted NTPases
are sporadically distributed across a wide phylogenetic
range in bacteria and in animals. Many of the
prokaryotic KAP NTPases are encoded in plasmids and
tend to undergo disruption to form pseudogenes. A
unique feature of all eukaryotic and certain bacterial
KAP NTPases is the presence of two or four
transmembrane helices inserted into the P-loop NTPase
domain. These transmembrane helices anchor KAP NTPases
in the membrane such that the P-loop domain is located
on the intracellular side.
Length = 301
Score = 29.3 bits (66), Expect = 3.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 71 IIVVEGPIASGKTEFCKKLADELD 94
+I + G SGKT F L DEL
Sbjct: 22 VIGLYGAWGSGKTSFLNLLEDELK 45
>gnl|CDD|234579 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 28.9 bits (66), Expect = 3.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMI 96
+I ++GP SGK K LA +L
Sbjct: 6 VIAIDGPAGSGKGTVAKILAKKLGFH 31
>gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated.
Length = 223
Score = 29.2 bits (66), Expect = 3.5
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Query: 72 IVVEGPIASGKTEFCKKLADELDMIALP--PANMDMF-------YKRG 110
+ ++G ASGKT F +LA+E+ P A++D F Y+RG
Sbjct: 25 VAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRG 72
>gnl|CDD|217465 pfam03266, NTPase_1, NTPase. This domain is found across all
species from bacteria to human, and the function was
determined first in a hyperthermophilic bacterium to be
an NTPase. The structure of one member-sequence
represents a variation of the RecA fold, and implies
that the function might be that of a DNA/RNA modifying
enzyme. The sequence carries both a Walker A and Walker
B motif which together are characteristic of ATPases or
GTPases. The protein exhibits an increased expression
profile in human liver cholangiocarcinoma when compared
to normal tissue.
Length = 168
Score = 28.7 bits (65), Expect = 3.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 72 IVVEGPIASGKTEFCKKLADEL 93
I + GP GKT KK+ + L
Sbjct: 2 IFITGPPGVGKTTLVKKVIELL 23
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 28.4 bits (64), Expect = 3.9
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 69 SKIIVVEGPIASGKTEFCKKLADE 92
K I++ G GKT + L E
Sbjct: 1 MKKIMLIGRSGCGKTTLTQALNGE 24
>gnl|CDD|223873 COG0802, COG0802, Predicted ATPase or kinase [General function
prediction only].
Length = 149
Score = 28.4 bits (64), Expect = 4.0
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 70 KIIVVEGPIASGKTEFCKKLA 90
++++ G + +GKT + +A
Sbjct: 26 DVVLLSGDLGAGKTTLVRGIA 46
>gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit
clpA. [Protein fate, Degradation of proteins, peptides,
and glycopeptides].
Length = 730
Score = 29.2 bits (66), Expect = 4.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 76 GPIASGKTEFCKKLADEL 93
GP GKTE K+LA+EL
Sbjct: 490 GPTGVGKTELAKQLAEEL 507
>gnl|CDD|234910 PRK01158, PRK01158, phosphoglycolate phosphatase; Provisional.
Length = 230
Score = 28.8 bits (65), Expect = 4.3
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 183 IFIEAMDKC----GYITKRHKDIYYEITRFTLPP--LFKPHLVIYLDIPVSKVKENVKKR 236
IF+ +++C + KR + T T K + + +PV +V+E +++
Sbjct: 80 IFLGDIEECEKAYSELKKRFPE---ASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEEL 136
Query: 237 NNPWEV 242
E+
Sbjct: 137 GLDLEI 142
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 28.0 bits (63), Expect = 5.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 71 IIVVEGPIASGKTEFCKKLADEL 93
IIVV G SGK+ K LA+ L
Sbjct: 1 IIVVMGVSGSGKSTVGKALAERL 23
>gnl|CDD|237475 PRK13695, PRK13695, putative NTPase; Provisional.
Length = 174
Score = 28.3 bits (64), Expect = 5.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 72 IVVEGPIASGKTEFCKKLADELD 94
I + GP GKT K+A+ L
Sbjct: 3 IGITGPPGVGKTTLVLKIAELLK 25
>gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal
protein S1; Provisional.
Length = 863
Score = 28.9 bits (64), Expect = 5.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYK 108
II ++GP SGK+ C+ LA L L N FY+
Sbjct: 36 IIALDGPAGSGKSSVCRLLASRLGAQCL---NTGSFYR 70
>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III
C-methyltransferase; Provisional.
Length = 390
Score = 28.5 bits (64), Expect = 5.9
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 11/40 (27%)
Query: 303 SNKMREWRQLTTKEWNNLRMLYADEKSDLMTAFNTVERYD 342
S+ + EWRQ +K W+N M F T+ R D
Sbjct: 236 SSSLSEWRQNLSKSWHN-----------FMDNFITIRRRD 264
>gnl|CDD|238047 cd00095, IFab, Interferon alpha, beta. Includes also interferon
omega and tau. Different from interferon gamma family.
Type I interferons(alpha, beta) belong to the larger
helical cytokine superfamily, which includes growth
hormones, interleukins, several colony-stimulating
factors and several other regulatory molecules. All
function as regulators of cellular activty by
interacting with cell-surface receptors and activating
various signalling pathways. Interferons produce
antiviral and antiproliferative responses in cells.
Receptor specificity determines function of the various
members of the family.
Length = 152
Score = 28.1 bits (63), Expect = 5.9
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 33 KHNADLRRPPPY--PYETRDFKFPWTLMEDTEDRFNQNSKIIVV 74
K +RR PP + DF FP L++ D+F + V+
Sbjct: 14 KLLRQMRRLPPQSCLKDRADFGFPQELLQG--DQFQKAQAASVL 55
>gnl|CDD|213248 cd03281, ABC_MSH5_euk, ATP-binding cassette domain of eukaryotic
MutS5 homolog. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the
MutS family possess C-terminal domain with a conserved
ATPase activity that belongs to the ATP binding
cassette (ABC) superfamily. MutS homologs (MSH) have
been identified in most prokaryotic and all eukaryotic
organisms examined. Prokaryotes have two homologs
(MutS1 and MutS2), whereas seven MSH proteins (MSH1 to
MSH7) have been identified in eukaryotes. The homodimer
MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are
primarily involved in mitotic mismatch repair, whereas
MSH4-MSH5 is involved in resolution of Holliday
junctions during meiosis. All members of the MutS
family contain the highly conserved Walker A/B ATPase
domain, and many share a common mechanism of action.
MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to
form sliding clamps, and recognition of specific DNA
structures or lesions results in ADP/ATP exchange.
Length = 213
Score = 28.0 bits (63), Expect = 6.3
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 57 LMEDTEDRFNQNS--------KIIVVEGPIASGKTEFCKKLA 90
L+E D F N I+V+ GP +SGK+ + K++A
Sbjct: 9 LLELFVDSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVA 50
>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 28.4 bits (64), Expect = 6.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELD 94
K+IV+ GP ASGKT LA L
Sbjct: 4 KLIVIAGPTASGKTALAIALAKRLG 28
>gnl|CDD|237221 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 584
Score = 28.6 bits (64), Expect = 7.5
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 348 YTGDDMMEIEEKLSKTPEFYYTKGF 372
MME E LS EF + G+
Sbjct: 99 DAAPQMMEFLENLSPWLEFVWKPGY 123
>gnl|CDD|224847 COG1936, COG1936, Predicted nucleotide kinase (related to CMP and
AMP kinases) [Nucleotide transport and metabolism].
Length = 180
Score = 27.7 bits (62), Expect = 7.6
Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 29/129 (22%)
Query: 70 KIIVVEGPIASGKTEFCKKLAD----ELDMIALPPANMDMFYKRGDFDWRSLDAEWSNEN 125
+I + G GKT CK L + +++ L A + Y D +S+ + +
Sbjct: 1 MLIAITGTPGVGKTTVCKLLRELGYKVIELNEL--AKENGLYTEYDELRKSVIVD--VDK 56
Query: 126 LKSYDEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDA-LAHMLSTGQGAIVQRCPFSDFIF 184
L+ E L S VD+ L+H+L +V R +
Sbjct: 57 LRKRLE------------------ELLREGSGIVDSHLSHLLPDCDLVVVLRADPE--VL 96
Query: 185 IEAMDKCGY 193
E + GY
Sbjct: 97 YERLKGRGY 105
>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Mitochondrial aconitase A catalytic domain.
Aconitase (also known as aconitate hydratase and citrate
hydro-lyase) catalyzes the reversible isomerization of
citrate and isocitrate as part of the TCA cycle.
Cis-aconitate is formed as an intermediary product
during the course of the reaction. In eukaryotes two
isozymes of aconitase are known to exist: one found in
the mitochondrial matrix and the other found in the
cytoplasm. This is the mitochondrial form. The
mitochondrial product is coded by a nuclear gene. Most
members of this subfamily are mitochondrial but there
are some bacterial members.
Length = 412
Score = 28.2 bits (63), Expect = 7.9
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 198 HKDIYYEITRFTLPPL----FKPHLVIYLDIPVSKVKENVKKRNNPWEV 242
D EI L P F P L PVSK KE +K P ++
Sbjct: 240 EYDQLIEINLSELEPHINGPFTPDLAT----PVSKFKEVAEKNGWPLDL 284
>gnl|CDD|233976 TIGR02687, TIGR02687, TIGR02687 family protein. Members of this
family are uncharacterized proteins sporadically
distributed in bacteria and archaea, about 880 amino
acids in length. This protein is repeatedly found
upstream of another uncharacterized protein of about 470
amino acids in length, modeled by TIGR02688.
Length = 844
Score = 28.3 bits (63), Expect = 8.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 254 EIEDLYKNNYLPQISDS 270
++EDLY N YL ++
Sbjct: 402 QVEDLYTNWYLGKLGLK 418
>gnl|CDD|223844 COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cell envelope
biogenesis, outer membrane].
Length = 459
Score = 28.3 bits (64), Expect = 8.4
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Query: 270 SSELLVY--DWSDGG----DPEVVVEDIERIDFDHYDHFSN 304
S + V D SD +P V + + I+FDH D++ +
Sbjct: 155 SGDYFVAEADESDSSFLHYNPRVAI--VTNIEFDHLDYYGD 193
>gnl|CDD|238980 cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis.
Length = 179
Score = 27.5 bits (62), Expect = 8.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 71 IIVVEGPIASGKTEFCKKLAD 91
II + G I SGK+ K L +
Sbjct: 1 IIGLTGGIGSGKSTVAKLLKE 21
>gnl|CDD|184430 PRK13975, PRK13975, thymidylate kinase; Provisional.
Length = 196
Score = 27.8 bits (62), Expect = 9.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 69 SKIIVVEGPIASGKTEFCKKLADELD 94
+K IV EG SGKT K LA++L+
Sbjct: 2 NKFIVFEGIDGSGKTTQAKLLAEKLN 27
>gnl|CDD|180682 PRK06761, PRK06761, hypothetical protein; Provisional.
Length = 282
Score = 27.8 bits (62), Expect = 9.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 68 NSKIIVVEGPIASGKTEFCKKLADEL 93
+K+I++EG GK+ K L D L
Sbjct: 2 MTKLIIIEGLPGFGKSTTAKMLNDIL 27
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.436
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,213,433
Number of extensions: 2101793
Number of successful extensions: 2251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2240
Number of HSP's successfully gapped: 93
Length of query: 395
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 296
Effective length of database: 6,546,556
Effective search space: 1937780576
Effective search space used: 1937780576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)