RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6807
(395 letters)
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 110 bits (275), Expect = 5e-28
Identities = 37/250 (14%), Positives = 78/250 (31%), Gaps = 20/250 (8%)
Query: 60 DTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDA 119
+ K I +EG IA+GK+ F L + + P + + +
Sbjct: 15 FSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEEL 74
Query: 120 EWSNENLKSYDEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLS--TGQGAIVQRC 177
S +N + + + P+ + FQ R + +L L +R
Sbjct: 75 TMSQKNGGNVLQM-MYEKPER-WSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERS 132
Query: 178 PFSDFIFIEAMD-KCGYITKRHKDIY---YEITRFTLPPLFKPHLVIYLDIPVSKVKENV 233
+SD + + + + IY ++ + +IYL +
Sbjct: 133 VYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRI 192
Query: 234 KKRNNPWEVNSPIFNDKYLHEIEDLYKN-------NYLPQISDSSELLVYDWSD--GGDP 284
R E P+ +YL ++ +++ +L D ++
Sbjct: 193 YLRGRNEEQGIPL---EYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKY 249
Query: 285 EVVVEDIERI 294
E +VE ++
Sbjct: 250 ESLVEKVKEF 259
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 103 bits (258), Expect = 4e-26
Identities = 34/234 (14%), Positives = 65/234 (27%), Gaps = 42/234 (17%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYD 130
I + G + +GK+ +++ +L + +
Sbjct: 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVE---------ENPYFEQ----------- 41
Query: 131 EKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDK 190
+ KD K QI ML R A I R D IF++
Sbjct: 42 ---YYKDLKK-TVFKMQIYMLTARSKQLKQAKNLE-----NIIFDRTLLEDPIFMKVNYD 92
Query: 191 CGYITKRHKDIYYEI-------TRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNPWEVN 243
+ + + Y + +VIYL + +KKR E+
Sbjct: 93 LNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEELL 152
Query: 244 SPIFNDKYLHEIEDLYKNNYLPQISDSSELLV--YDWSDGGDPEVVVEDIERID 295
++Y + Y+ + Q V + E+++ + I
Sbjct: 153 ---IGEEYWETLNKNYE-EFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNSIK 202
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 101 bits (253), Expect = 3e-25
Identities = 39/238 (16%), Positives = 74/238 (31%), Gaps = 23/238 (9%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSY 129
+ + +EG IA GK+ F K L + + + + S N
Sbjct: 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGN---L 59
Query: 130 DEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHML--STGQGAIVQRCPFSDFIFIEA 187
+ ++P + FQ R V ++ L + I +R +SD
Sbjct: 60 LDM-MYREPAR-WSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAK 117
Query: 188 MD-KCGYITKRHKDIY---YEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNPWEVN 243
+ G ++ IY + + H IYL + + +R E
Sbjct: 118 NLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKG 177
Query: 244 SPIFNDKYLHEIEDLYKN-------NYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294
+ YL ++ ++ + + +LV D +D D V E +
Sbjct: 178 IEL---AYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVND--DFSEEVTKQEDL 230
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 94.4 bits (234), Expect = 1e-22
Identities = 45/232 (19%), Positives = 86/232 (37%), Gaps = 30/232 (12%)
Query: 66 NQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNEN 125
+++EG I SGKT + + I L ++ +W N N
Sbjct: 17 GTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVE---------------KWRNVN 61
Query: 126 LKSYDEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFI 185
+ E KDPK + FQ + + + + I++R FS
Sbjct: 62 GVNLLEL-MYKDPKK-WAMPFQSYVTLTMLQSHTAP-----TNKKLKIMERSIFSARYCF 114
Query: 186 EAMD-KCGYITKRHKDIYYEITRFTLPPL-FKPHLVIYLDIPVSKVKENVKKRNNPWEVN 243
+ G + + + E +F + + L+IYL E +++R E
Sbjct: 115 VENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESC 174
Query: 244 SPIFNDKYLHEIEDLYKNNYLP-QISDSSELLVYDWSDGGDPEVVVEDIERI 294
P+ KYL E+ +L+++ + + S ++LV D + E + + +R
Sbjct: 175 VPL---KYLQELHELHEDWLIHQRRPQSCKVLVLDADL--NLENIGTEYQRS 221
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 63.2 bits (153), Expect = 3e-11
Identities = 28/255 (10%), Positives = 67/255 (26%), Gaps = 35/255 (13%)
Query: 72 IVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDA----EWSNENLK 127
I ++G GK+ + +A A + +++ WR+L +
Sbjct: 10 IYLDGVYGIGKSTTGRVMAS-----AASGGSPTLYFPEPMAYWRTLFETDVISGIYDTQN 64
Query: 128 SYDEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGA--------IVQRCPF 179
+ D T +Q R ++ + R P
Sbjct: 65 RKQQGNLAVDDAALITAHYQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVFDRHPV 124
Query: 180 SD-FIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNN 238
+ F A G ++ TLP + ++ + V + ++ R
Sbjct: 125 ASTVCFPAARYLLGDMSMCALMAMVA----TLPREPQGGNIVVTTLNVEEHIRRLRTRAR 180
Query: 239 PWEVNSPIFNDKYLHEIEDLYKN-----NYLPQISDSSELLVYDWSDGGDPEVVVEDIER 293
E + + ++Y ++L + W + +
Sbjct: 181 IGEQIDI----TLIATLRNVYFMLVNTCHFLRSGRVWRD----GWGELPTSCGAYKHRAT 232
Query: 294 IDFDHYDHFSNKMRE 308
+ S ++ +
Sbjct: 233 QMDAFQERVSPELGD 247
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 4e-09
Identities = 68/432 (15%), Positives = 118/432 (27%), Gaps = 171/432 (39%)
Query: 5 LAVGLPKLLARGPGHHFPVLSVARFISSKHNAD--LRRPPPYPYETRDFKFPWTLMEDTE 62
LA L + ++ I + A +RP + L
Sbjct: 104 LAAKLL------QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA-------LFRAVG 150
Query: 63 DRFNQNSKIIVV---EGPI--------------ASGKTEFCKKLADELDMIALPPANMDM 105
+ N++++ + +G + K A+ L + + +
Sbjct: 151 E---GNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 106 FYKRGDFD---W-RSLDAEWSNENLKS---------------YDEKTFCK----DP---- 138
+ +G + W + + L S Y K P
Sbjct: 208 VFTQG-LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY--VVTAKLLGFTPGELR 264
Query: 139 -------------------------KHFH-------TIAFQI--RMLQ------LRFSVY 158
+ F T+ F I R + L S+
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 159 VDALAH-------MLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEI------ 205
D+L + MLS + + ++K K + I
Sbjct: 325 EDSLENNEGVPSPMLS------ISNLTQEQVQ--DYVNKTNSHLPAGKQVE--ISLVNGA 374
Query: 206 TRFTL--PP--LFKPHLVIYL---------D---IPVSKVKENVKKRNNPWEVNSPIFND 249
+ PP L+ L + L D IP S+ K R P V SP F+
Sbjct: 375 KNLVVSGPPQSLY--GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP--VASP-FHS 429
Query: 250 KYLHE-----IEDLYKNNYLPQIS-DSSELL--VYDWSDGGD--------PEVVVEDI-- 291
L +DL KNN +S ++ ++ VYD DG D E +V+ I
Sbjct: 430 HLLVPASDLINKDLVKNN----VSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 292 ERIDFDHYDHFS 303
+ ++ F
Sbjct: 486 LPVKWETTTQFK 497
Score = 44.7 bits (105), Expect = 4e-05
Identities = 36/195 (18%), Positives = 56/195 (28%), Gaps = 60/195 (30%)
Query: 151 LQLRFSVYVDALAHMLSTGQGAIVQRCPFSDF--IFIEAMD-----------KCGYITKR 197
L +F YV +L GQ V ++F ++E D + K
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 198 HKDI--YYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIF-------- 247
+ I Y P K S + V + N + +
Sbjct: 120 KELIKNYITARIMAKRPFDKKS--------NSALFRAVGEGN------AQLVAIFGGQGN 165
Query: 248 NDKYLHEIEDLYKNNYLPQISD----SSELLVYDWSDGGDPEVVVEDIERIDFDHYDHFS 303
D Y E+ DLY+ Y + D S+E L ++ R D F+
Sbjct: 166 TDDYFEELRDLYQ-TYHVLVGDLIKFSAETL--------------SELIRTTLDAEKVFT 210
Query: 304 NKM--REWRQLTTKE 316
+ EW L
Sbjct: 211 QGLNILEW--LENPS 223
Score = 35.8 bits (82), Expect = 0.032
Identities = 28/162 (17%), Positives = 52/162 (32%), Gaps = 47/162 (29%)
Query: 247 FNDKYLH--EIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFDHYDHFSN 304
F + YL +I L L Q +D++ + + I+ +Y +
Sbjct: 91 FENCYLEGNDIHALAAK--LLQENDTTLVKTKEL------------IK-----NY--ITA 129
Query: 305 KMREWRQLTTKEWNNLRMLYADEKSDLMTAFN---TVERY-DCPELA-----YTG----- 350
++ R K + L + + L+ F + Y + EL Y
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE--ELRDLYQTYHVLVGDL 187
Query: 351 -DDMMEIEEKLSKTP---EFYYTKGFNPVKDNVWWKTNTDPK 388
E +L +T E +T+G N ++ W N
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILE----WLENPSNT 225
Score = 31.2 bits (70), Expect = 0.74
Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 59/167 (35%)
Query: 59 EDTEDRFNQ-------------NS-KIIVVEGPIAS-------------------GKTEF 85
+D ++ N N K +VV GP S + F
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 86 CK---KLADELDMIALP-------PANMDMFYKRGDFDWRSLDAEWSNENLKS--YDEKT 133
+ K ++ +A P PA+ D+ K D + ++ ++++ YD T
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPAS-DLINK----DLVKNNVSFNAKDIQIPVYD--T 462
Query: 134 FC-KDPKHFHT-IAFQIRMLQLRFSVYVDALA-----HMLSTGQGAI 173
F D + I+ +I +R V + H+L G G
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA 509
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 4e-08
Identities = 65/442 (14%), Positives = 114/442 (25%), Gaps = 147/442 (33%)
Query: 26 VARFISSKHNADLRRPPPYPY-------ETRDFKFPWTLMEDTEDR-FNQN--------- 68
V +F+ + Y + E R + + DR +N N
Sbjct: 79 VQKFVEEVLRIN------YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 69 -----------------SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGD 111
+K ++++G + SGKT + + +F
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK--IF----- 185
Query: 112 FDWRSLDAEWSNE-------NLKSYDEKTFCKDPKHFHTIAFQIRMLQLRFS------VY 158
W +L S E L + + H I +I +Q Y
Sbjct: 186 --WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 159 VDALAHMLSTGQGAIVQRCPFSDFIFIEAMD-KCGY-ITKRHKDI--------YYEITRF 208
+ L +V + A + C +T R K + I+
Sbjct: 244 ENCL----------LVLL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 209 TLPPLFKPH-----LVIYLDIPVSKVKENVKK-------------RNNP--WEVNSPIFN 248
P L+ YLD + V R+ W+ +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 249 DKYLHEIE--------DLYKNNY-----LPQISD-SSELLVYDWSDGGDPEVVVEDIERI 294
DK IE Y+ + P + + LL W D + V +
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD--VIKSDVMVVV-- 408
Query: 295 DFDHYDHFSNKMREWRQLTTKEWNNLR----MLYAD--EKSDLMTAFNT--VERYDCPEL 346
+ L K+ +Y + K + A + V+ Y+ P+
Sbjct: 409 -----NKLHKY-----SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK- 457
Query: 347 AYTGDDMMEIEEKLSKTPEFYY 368
+ DD L Y
Sbjct: 458 TFDSDD-------LIPPYLDQY 472
Score = 37.1 bits (85), Expect = 0.009
Identities = 40/283 (14%), Positives = 77/283 (27%), Gaps = 73/283 (25%)
Query: 140 HFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHK 199
H H + F+ Q + Y D L+ A V D ++ M K +
Sbjct: 3 HHHHMDFETGEHQYQ---YKDILSVFED----AFVDNFDCKD---VQDMPKSILSKEEID 52
Query: 200 DIYYEITRFT-LPPLFKPHLVIYLDIPVSKVK---ENVKKRNNPW-------EVNSPIFN 248
I + LF L V+ E V + N + E P
Sbjct: 53 HIIMSKDAVSGTLRLF----WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 249 -DKYLHEIEDLYKNN-------------------YLPQISDSSELLVYDWSDGGDP---- 284
Y+ + + LY +N L ++ + +L+ G
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-----GVLGSGK 163
Query: 285 EVVVEDIERIDFDHYDHFSNKMREWRQLTTKEWNNLRMLYADEKSDLMTAFNT----VER 340
V D+ + K+ W NL+ + ++ ++
Sbjct: 164 TWVALDVCL-SYKVQCKMDFKIF---------WLNLK--NCNSPETVLEMLQKLLYQIDP 211
Query: 341 YDCPELAYTGDDMMEIEEKLSKTPEFYYTKGFNP---VKDNVW 380
++ + + I ++ +K + V NV
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Score = 32.5 bits (73), Expect = 0.29
Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 36/110 (32%)
Query: 111 DFDW-----RSLDAEWSN--------ENLKSYDEKTFCKDPKHFHTIAFQIRMLQLRFSV 157
DF + R W+ + LK Y + C + +
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFY-KPYICDNDPKYER-------------- 543
Query: 158 YVDALAHMLSTGQGAIVQRCPFSDFIFIEAMDKCGYITKRHKDIYYEITR 207
V+A+ L + ++D + I M + + I+ E +
Sbjct: 544 LVNAILDFLPK-IEENLICSKYTDLLRIALMAE-------DEAIFEEAHK 585
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene
therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 53.2 bits (127), Expect = 5e-08
Identities = 37/208 (17%), Positives = 65/208 (31%), Gaps = 40/208 (19%)
Query: 72 IVVEGPIASGKTEFCK---KLADELDMIALP-PANMDMFYKRGDFDWRSLDAEWSNENLK 127
+ ++GP GKT + L D++ +P P M Y WR L A + N+
Sbjct: 7 VYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEP----MTY------WRVLGASETIANI- 55
Query: 128 SYDEKTFCKDPKHFHTIAFQIR-MLQLRFSVYVDALAHMLSTGQGA-------------- 172
Y + + A + Q+ + +L+ G
Sbjct: 56 -YTTQHRLDQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTL 114
Query: 173 IVQRCPFSD-FIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKE 231
I R P + + A G +T + +PP ++ +P + +
Sbjct: 115 IFDRHPIAALLCYPAARYLMGSMTPQA----VLAFVALIPPTLPGTNIVLGALPEDRHID 170
Query: 232 NVKKRNNPWEVNSPIFNDKYLHEIEDLY 259
+ KR P E L I +Y
Sbjct: 171 RLAKRQRPGERLDL----AMLAAIRRVY 194
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 50.6 bits (120), Expect = 3e-07
Identities = 31/224 (13%), Positives = 61/224 (27%), Gaps = 40/224 (17%)
Query: 58 MEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADEL----DMIALPPANMDMFYKRGDFD 113
M + I ++G GKT ++ + I L +
Sbjct: 1 MSTDKTDVKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSY-------- 52
Query: 114 WRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIRM-LQLRFSVYVDALAHMLSTGQGA 172
WR+L + Y +T + A ++ Q F + +S
Sbjct: 53 WRNLAG--EDAICGIYGTQTRRLNGDVSPEDAQRLTAHFQSLFCSPHAIMHAKISALMDT 110
Query: 173 ----------------IVQRCPFSD-FIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFK 215
+ R P + F + G ++ FTLP
Sbjct: 111 STSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMSPAA----LPGLLFTLPAEPP 166
Query: 216 PHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLY 259
++ + + V KR P E + ++ + ++Y
Sbjct: 167 GTNLVVCTVSLPSHLSRVSKRARPGETVNL----PFVMVLRNVY 206
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
{Herpes simplex virus} SCOP: c.37.1.1
Length = 376
Score = 50.3 bits (119), Expect = 6e-07
Identities = 47/268 (17%), Positives = 81/268 (30%), Gaps = 50/268 (18%)
Query: 13 LARGPGH-HFPVLSVARFISSKHNADLRRPPPYPYETRDFKFPWTLMEDTEDRFNQNSKI 71
+A P H H A +N RR P ++ E ++
Sbjct: 1 MASYPCHQHASAFDQAARSRGHNN---RRTALRPRRQQEAT------EVRPEQKMPTLLR 51
Query: 72 IVVEGPIASGKT---EFCKKLADELDMIALP-PANMDMFYKRGDFDWRSLDAEWSNENLK 127
+ ++GP GKT + L D++ +P P M Y WR L A + N+
Sbjct: 52 VYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEP----MTY------WRVLGASETIANI- 100
Query: 128 SYDEKTFCKDPKHFHTIAFQI-RMLQLRFSVYVDALAHMLSTGQGA-------------- 172
Y + + A + Q+ + +L+ G
Sbjct: 101 -YTTQHRLDQGEISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTL 159
Query: 173 IVQRCPFSD-FIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKE 231
I R P + + A G +T + +PP ++ +P + +
Sbjct: 160 IFDRHPIAALLCYPAARYLMGSMTPQA----VLAFVALIPPTLPGTNIVLGALPEDRHID 215
Query: 232 NVKKRNNPWEVNSPIFNDKYLHEIEDLY 259
+ KR P E L I +Y
Sbjct: 216 RLAKRQRPGERLDL----AMLAAIRRVY 239
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 48.4 bits (115), Expect = 8e-07
Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 49/226 (21%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSY 129
+I+V G A+GKT + LA L + L + D F + D EWS
Sbjct: 6 ALIIVTGHPATGKTTLSQALATGLRLPLL---SKDAFKEVMFDGLGWSDREWSRR----V 58
Query: 130 DEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMD 189
+ A +L +GQ I+ + F
Sbjct: 59 GATAIM-------------MLYHT--------AATILQSGQSLIM------ESNF----- 86
Query: 190 KCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFND 249
+ + + I + E + R + +D
Sbjct: 87 ----RVDLDTERMQNLHTIAPFTP----IQIRCVASGDVLVERILSRIAQGARHPGHCDD 138
Query: 250 KYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEV--VVEDIER 293
+ ++E + +P + LL D + ++ +V+ + +
Sbjct: 139 RSPADLELVRSRGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQ 184
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 42.8 bits (101), Expect = 7e-05
Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 45/141 (31%)
Query: 66 NQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPAN-------MDMFYK---------- 108
+ +I V G ASGK+ C+K+ + L + D FYK
Sbjct: 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKA 81
Query: 109 -RGDFDW---RSLDAEWSNENLKS-----------YDEKTFCKDPKH------------- 140
+G +++ + D + + LK+ YD T + P+
Sbjct: 82 LKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEG 141
Query: 141 FHTIAFQIRMLQLRFSVYVDA 161
Q ++VD
Sbjct: 142 ILVFYSQEIRDMFHLRLFVDT 162
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 41.6 bits (98), Expect = 1e-04
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 66 NQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPA--NMDMFYKRGDFDWRSLDAEWSN 123
++ ++G SGKT +L+ L + +MD + + + EW
Sbjct: 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFE 78
Query: 124 ENLKSYDEKTFCKD 137
+D +
Sbjct: 79 YYYLQWDVEWLTHQ 92
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 37.8 bits (88), Expect = 0.002
Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 66/234 (28%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSY 129
+I++EGP K+ KL+ EL + +
Sbjct: 2 TLIILEGPDCCFKSTVAAKLSKEL-------------------KYPIIKG---------- 32
Query: 130 DEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIEAMD 189
F L F+ D I+ R +S+ ++ +
Sbjct: 33 SS---------FELAKSGNEKLFEHFNKLADE--------DNVIIDRFVYSNLVYAKKFK 75
Query: 190 KCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFND 249
+T+R + V+YL S +K+ ++ R + +
Sbjct: 76 DYSILTERQLRFI-------EDKIKAKAKVVYLHADPSVIKKRLRVRGDEY------IEG 122
Query: 250 KYLHEIEDLYKNNYLPQISDSSELLVYDW-SDGGDPEVVVEDI-ERIDFDHYDH 301
K + I +LY+ ++ ++ L Y W + + + +DI ++ +H+ H
Sbjct: 123 KDIDSILELYR-----EVMSNAGLHTYSWDTGQWSSDEIAKDIIFLVELEHHHH 171
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 38.0 bits (89), Expect = 0.002
Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 41/130 (31%)
Query: 70 KIIVVEGPIASGKTEFCKKLADEL--DMIALPPANMDMFYK---------RGDFDW---R 115
+I + G ASGKT + LA L + LP MD +YK R ++
Sbjct: 7 FVIGIAGGTASGKTTLAQALARTLGERVALLP---MDHYYKDLGHLPLEERLRVNYDHPD 63
Query: 116 SLDAEWSNENLKS-----------YDEKTFCKDPKH-------------FHTIAFQIRML 151
+ D E+ ++ YD + + + P+ + +
Sbjct: 64 AFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRD 123
Query: 152 QLRFSVYVDA 161
+ V+VDA
Sbjct: 124 LMDLKVFVDA 133
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 38.3 bits (89), Expect = 0.002
Identities = 25/140 (17%), Positives = 41/140 (29%), Gaps = 45/140 (32%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMIALPPAN-------MDMFYK-----------RGDF 112
+I V G ASGK+ C K+ L + D FY+ +G F
Sbjct: 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQF 83
Query: 113 DW---RSLDAEWSNENLKS-----------YDEKTFCKDPKH-------------FHTIA 145
++ + D E + LK YD + + +
Sbjct: 84 NFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFY 143
Query: 146 FQIRMLQLRFSVYVDALAHM 165
Q + ++VD A
Sbjct: 144 SQEVRDLFQMKLFVDTDADT 163
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 37.9 bits (88), Expect = 0.002
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 66 NQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYK---------RGDFDWRS 116
+ II + G SGKT K L L ++ + D F+K G +
Sbjct: 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSV--ISQDDFFKPESEIETDKNGFLQYDV 75
Query: 117 LDA 119
L+A
Sbjct: 76 LEA 78
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin
biosynthesis; HET: DST AMP; 2.10A {Agrobacterium
tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 37.1 bits (86), Expect = 0.005
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELD 94
+ ++ GP SGKT+ ++A E
Sbjct: 2 LLHLIYGPTCSGKTDMAIQIAQETG 26
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 34.3 bits (78), Expect = 0.034
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 66 NQNSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNEN 125
+ I+++ G SGK+ + LA+ + + D W + +
Sbjct: 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPK--------VHFHSDDLWGYIKHGRIDPW 57
Query: 126 LKSYDEKT 133
L ++
Sbjct: 58 LPQSHQQN 65
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 34.0 bits (77), Expect = 0.043
Identities = 14/120 (11%), Positives = 38/120 (31%), Gaps = 4/120 (3%)
Query: 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLK 127
+++I++ G ++GK+ + L L L +D + +S + +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWL-AFGVDSLIEAMPLKMQSAEGGIEFDADG 60
Query: 128 SYDEKTFCKDPKHFHTIAFQIR-MLQLRFSVYVDALAHMLSTGQGAIVQRCPFSDFIFIE 186
+ A + M + + +D + + Q D +++
Sbjct: 61 GVSIGPEFR--ALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVG 118
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 34.6 bits (80), Expect = 0.048
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 68 NSKIIVVEGPIASGKTEFCKKLADELD 94
+ K+IV+ G GK++ +LA + +
Sbjct: 1 SKKVIVIAGTTGVGKSQLSIQLAQKFN 27
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 33.5 bits (76), Expect = 0.068
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSY 129
II +E SG KKLA+EL + FY S + + +
Sbjct: 15 LIITIEREYGSGGRIVGKKLAEELGIH---------FYDDDILKLASEKSAVGEQFFRLA 65
Query: 130 DEK 132
DEK
Sbjct: 66 DEK 68
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 33.7 bits (78), Expect = 0.094
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELD 94
+IV+ GP ASGKTE ++A + +
Sbjct: 8 FLIVIVGPTASGKTELSIEVAKKFN 32
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 33.0 bits (75), Expect = 0.097
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 69 SKIIVVEGPIASGKTEFCKKLADELDMIAL 98
K+ ++ GP GK+ CK+LA +LD A
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAY 31
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 33.6 bits (78), Expect = 0.10
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELD 94
K I + GP ASGKT +L L
Sbjct: 11 KAIFLMGPTASGKTALAIELRKILP 35
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 33.3 bits (77), Expect = 0.11
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELD 94
K++ + GP A GKT+ LA L+
Sbjct: 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 33.3 bits (77), Expect = 0.11
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELD 94
I + GP A+GKT+ LAD L
Sbjct: 6 PAIFLMGPTAAGKTDLAMALADALP 30
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 32.4 bits (73), Expect = 0.14
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELD 94
KI +V G GK+ K+ + LD
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILD 26
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus}
PDB: 3h0k_A
Length = 179
Score = 32.1 bits (73), Expect = 0.16
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 70 KIIVVEGPIASGKTEFCKKLAD 91
K+I++ G SGK+EF K L +
Sbjct: 2 KVILITGMPGSGKSEFAKLLKE 23
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 32.6 bits (74), Expect = 0.18
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 54 PWTLMEDTEDRFNQNSKIIVVEGPIASGKTEFCKKLADELD 94
T + ++ K++V+ G +GK+ LA
Sbjct: 25 TTTTNVSLRRQRHRKEKLLVLMGATGTGKSRLSIDLAAHFP 65
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 32.7 bits (74), Expect = 0.18
Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 15/92 (16%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMIALPPA--NMDMFYK--RGDFDWRSLDAEWSNENL 126
II V G +G + + D F++ R D
Sbjct: 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRR------- 59
Query: 127 KSYDEKTFCKDPKHFHTIAFQIRMLQLRFSVY 158
HF A +++ L+ F Y
Sbjct: 60 ----YAAGDATFSHFSYEANELKELERVFREY 87
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG,
PRK04182 class ME structural genomics, protein structure
initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 31.9 bits (72), Expect = 0.21
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYD 130
II + SG KKLA+ ++ Y + D + D +S E L+ +D
Sbjct: 8 IIAIGREFGSGGHLVAKKLAEHYNIP---------LYSKELLDEVAKDGRYSKEVLERFD 58
Query: 131 EKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQGAIV 174
EK I + Q + + + + + V
Sbjct: 59 EKPMNFAFIPVPAGGTTISLEQDIAIRQFNFIRKKANEEKESFV 102
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 32.0 bits (72), Expect = 0.23
Identities = 34/210 (16%), Positives = 69/210 (32%), Gaps = 39/210 (18%)
Query: 69 SKIIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFY--------KRGDFDWRSLDAE 120
++ + + GP GKT K ++ L +P FY +R FD +L
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG---FYTEEVRQGGRRIGFDVVTLSGT 57
Query: 121 WSNENLKSYDEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAH-MLSTGQGAIVQRCPF 179
+ + ++ + ++ V + + L + A P
Sbjct: 58 RGPLSRVGLEPPPGKRECRVG------------QYVVDLTSFEQLALPVLRNADCSSGPG 105
Query: 180 SDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLFKPHLVIYLDIPVSKVK-----ENVK 234
I D+ G + + + + L P +I IPV K K E ++
Sbjct: 106 QRVCVI---DEIGKMELFSQLFIQAVRQT----LSTPGTIILGTIPVPKGKPLALVEEIR 158
Query: 235 KRNNP--WEVNSPIFNDKYLHEIEDLYKNN 262
R + + V + + L +I +++
Sbjct: 159 NRKDVKVFNV-TKENRNHLLPDIVTCVQSS 187
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 31.9 bits (73), Expect = 0.24
Identities = 15/88 (17%), Positives = 23/88 (26%), Gaps = 19/88 (21%)
Query: 213 LFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYK--NNYLPQISDS 270
L KP + L + E + R + D Y + E + Y
Sbjct: 130 LPKPDWQVLLAVSAELAGERSRGRAQRDPGRAR---DNYERDAELQQRTGAVYA------ 180
Query: 271 SELLVYDWSD-------GGDPEVVVEDI 291
EL W DP + +
Sbjct: 181 -ELAAQGWGGRWLVVGADVDPGRLAATL 207
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.27
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 308 EWRQLTTKEWNNLRMLYADEKSDLMTAFN-TVE 339
E + L + +L+ LYAD+ + + A T+E
Sbjct: 18 EKQALKKLQ-ASLK-LYADDSAPAL-AIKATME 47
Score = 27.6 bits (60), Expect = 5.0
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 147 QIRMLQLRFSVYVD----ALA 163
++ LQ +Y D ALA
Sbjct: 21 ALKKLQASLKLYADDSAPALA 41
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 31.5 bits (71), Expect = 0.33
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 11/71 (15%)
Query: 71 IIVVEGPIASGKTEFCKKLADEL--DMIALPPANMDMFYK-----RGDFD----WRSLDA 119
II + GP GKT L + L + P K GD W L
Sbjct: 7 IIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLML 66
Query: 120 EWSNENLKSYD 130
+ +
Sbjct: 67 DALQYASREAA 77
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 31.2 bits (70), Expect = 0.37
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 68 NSKIIVVEGPIASGKTEFCKKLADEL 93
+K++VV G G T + D L
Sbjct: 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology;
HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB:
4e5u_A* 4esh_A* 3uwk_A* 3uwo_A* 3uxm_A*
Length = 213
Score = 31.0 bits (71), Expect = 0.47
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 199 KDIYYEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNP 239
+ + F L +P L + D+PV R
Sbjct: 116 EARIAALESFVQGDL-RPDLTLVFDLPVEIGLARAAARGRL 155
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 31.4 bits (71), Expect = 0.49
Identities = 28/210 (13%), Positives = 61/210 (29%), Gaps = 44/210 (20%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLKSYD 130
+I++ G GK+ F K LA L + + D L ++ E+ +
Sbjct: 6 LIILTGLPGVGKSTFSKNLAKIL--------------SKNNIDVIVLGSDLIRESFPVWK 51
Query: 131 EKTFCKDPKHFHTIAFQIRMLQLRFSVYVDA-------------LAHMLSTGQGAIVQRC 177
EK + + I + V VD +A + I +
Sbjct: 52 EK---YEEFIKKSTYRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKA 108
Query: 178 PFSDFIFIEAMDKCGYITKRHKDIYYEITRFTLPPLF----KPHLVIYLDIPVSK----- 228
+ + ++ I +F P +P L+I +
Sbjct: 109 SLDV---LIRRNIERGEKIPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIAK 165
Query: 229 --VKENVKKRNNPWEVNSPIFNDKYLHEIE 256
++++ + + N+ +I+
Sbjct: 166 KLIEKSKEIPKFYVLEENKNKNNNISDKID 195
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 31.0 bits (70), Expect = 0.80
Identities = 9/99 (9%), Positives = 27/99 (27%), Gaps = 14/99 (14%)
Query: 241 EVNSPIFNDKYLHEIEDLYKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERIDFDHYD 300
+ + + + S ++ DG + H
Sbjct: 295 PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG--------------YKHIH 340
Query: 301 HFSNKMREWRQLTTKEWNNLRMLYADEKSDLMTAFNTVE 339
+ + + Q+T+ +W + + + S ++ E
Sbjct: 341 YIKDTVENAIQITSGKWEAINIFRVTQDSLFYSSNEFEE 379
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase,
transferase; HET: T5A; 1.98A {Escherichia coli} SCOP:
c.37.1.1 PDB: 5tmp_A*
Length = 213
Score = 30.2 bits (69), Expect = 0.80
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 214 FKPHLVIYLDIPVSKVKENVKKRNNP 239
F+P L +YLD+ + + R
Sbjct: 131 FRPDLTLYLDVTPEVGLKRARARGEL 156
Score = 27.9 bits (63), Expect = 4.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 68 NSKIIVVEGPIASGKTEFCKKLADEL 93
SK IV+EG +GKT + + L
Sbjct: 2 RSKYIVIEGLEGAGKTTARNVVVETL 27
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 30.0 bits (67), Expect = 0.83
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 70 KIIVVEGPIASGKTEFCKKLADELDM 95
I++ G GKT K+LA + +
Sbjct: 12 PNILLTGTPGVGKTTLGKELASKSGL 37
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.1 bits (67), Expect = 0.96
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 13/58 (22%)
Query: 28 RFISSKHNADLRRPPP----Y------PYETRDFKFPWTLMEDTEDRFNQNSKIIVVE 75
R +S +L + P+E + P + +E+ N+ V E
Sbjct: 146 RIVSG---LELSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDE 200
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases,
center for structural genomics of infectious DISE
ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1
biovar eltor} PDB: 3n2i_A*
Length = 236
Score = 30.3 bits (69), Expect = 0.96
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 214 FKPHLVIYLDIPVSKVKENVKKRNNP 239
FKP L +YLDI E + R
Sbjct: 153 FKPDLTLYLDIDPKLGLERARGRGEL 178
Score = 27.6 bits (62), Expect = 6.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 68 NSKIIVVEGPIASGKTEFCKKLADEL 93
N+K IV+EG +GK+ + + + L
Sbjct: 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding,
structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A
{Sulfolobus tokodaii}
Length = 213
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 14/99 (14%)
Query: 203 YEITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNP--WEVNSPIFNDKYLHEIEDL-- 258
++ F + KP + Y+ + E +KK + E L
Sbjct: 113 KKLYSFAI----KPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLSPEEGFLKY 168
Query: 259 ---YKNNYLPQISDSSELLVYDWSDGGDPEVVVEDIERI 294
Y ++ +V D + P+ + I +
Sbjct: 169 QGLITEVYD-KLVKDENFIVIDGT--KTPKEIQIQIRKF 204
Score = 27.3 bits (61), Expect = 7.7
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 70 KIIVVEGPIASGKTEFCKKLADEL 93
+I EG SGK+ L D +
Sbjct: 5 VLIAFEGIDGSGKSSQATLLKDWI 28
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 29.6 bits (66), Expect = 1.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 72 IVVEGPIASGKTEFCKKLADEL 93
I++ G GKT KK+ + L
Sbjct: 3 IIITGEPGVGKTTLVKKIVERL 24
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, A binding, structural
genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Length = 195
Score = 29.4 bits (67), Expect = 1.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 214 FKPHLVIYLDIPVSKVKENVKKRN 237
KP + + LDIPV +K++N
Sbjct: 121 VKPDITLLLDIPVDIALRRLKEKN 144
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.2 bits (65), Expect = 1.6
Identities = 10/41 (24%), Positives = 11/41 (26%), Gaps = 15/41 (36%)
Query: 281 GGDPEVVVEDIERIDF----------DHY-DHFSNKMREWR 310
P +VE D D D S EWR
Sbjct: 28 KVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRS----EWR 64
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
{Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Length = 205
Score = 29.1 bits (66), Expect = 1.8
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 214 FKPHLVIYLDIPVSKVKENVKKRNN 238
P L IYL++ +E + K +
Sbjct: 123 LYPDLTIYLNVSAEVGRERIIKNSR 147
Score = 28.3 bits (64), Expect = 3.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 69 SKIIVVEGPIASGKTEFCKKLADEL 93
S I EGP SGKT ++ L
Sbjct: 2 SAFITFEGPEGSGKTTVINEVYHRL 26
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 29.1 bits (66), Expect = 1.9
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 19/85 (22%)
Query: 213 LFKPHLVIYLDIPVSKVKENVKKRNNPWEVNSPIFNDKYLHEIEDLYK---NNYLPQISD 269
L KP +V YL++P + + + Y E + K Y +
Sbjct: 128 LIKPDVVFYLNVPPNYAQNRSDYG-----------EEIY--EKVETQKKIYETYK-HFAH 173
Query: 270 SSELLVYDWSDGGDPEVVVEDIERI 294
+ D + E + DI +
Sbjct: 174 EDYWINIDAT--RKIEDIHNDIVKE 196
Score = 28.3 bits (64), Expect = 3.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 70 KIIVVEGPIASGKTEFCKKLADEL 93
K IV EG SGK+ K L + L
Sbjct: 11 KFIVFEGLDRSGKSTQSKLLVEYL 34
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, MTBI,
transferase; HET: ATM; 1.85A {Staphylococcus aureus
subsp} PDB: 4dwj_A* 4f4i_A
Length = 229
Score = 29.2 bits (66), Expect = 2.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 214 FKPHLVIYLDIPVSKVKENVKKRNN 238
P L IYL++ +E + K +
Sbjct: 147 LYPDLTIYLNVSAEVGRERIIKNSR 171
Score = 27.2 bits (61), Expect = 9.3
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 69 SKIIVVEGPIASGKTEFCKKLADEL 93
S I EGP SGKT ++ L
Sbjct: 26 SAFITFEGPEGSGKTTVINEVYHRL 50
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle
structural genomics center for infectious transferase;
1.90A {Burkholderia thailandensis}
Length = 227
Score = 29.1 bits (66), Expect = 2.0
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 204 EITRFTLPPLFKPHLVIYLDIPVSKVKENVKKRNNP 239
+ R+ +P L + D+P P
Sbjct: 141 ALERWVQGGF-QPDLTVLFDVPPQIASARRGAVRMP 175
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 28.9 bits (66), Expect = 2.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 69 SKIIVVEGPIASGKTEFCKKLADELDMI 96
I+ ++GP ASGK+ +++A L +
Sbjct: 2 RGIVTIDGPSASGKSSVARRVAAALGVP 29
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 28.8 bits (64), Expect = 2.0
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 66 NQNSKIIVVEGPIASGKTEFCKKLADELDMIAL 98
N + I V+ G SGK+ ++A +L L
Sbjct: 5 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 29.6 bits (67), Expect = 2.0
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 27 ARFISSKHNADLRRPPPYPYETRDFKFPWTLMEDTEDRFNQNSKIIVVEGPIASGKTEFC 86
RF D+ R Y + +E + ++I + GP GKT F
Sbjct: 341 IRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRK-GEVIGIVGPNGIGKTTFV 399
Query: 87 KKLADEL 93
K LA
Sbjct: 400 KMLAGVE 406
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 28.9 bits (64), Expect = 2.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMI 96
I++ G +GKT + +A ELD
Sbjct: 12 NILITGTPGTGKTSMAEMIAAELDGF 37
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 28.9 bits (64), Expect = 2.3
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 66 NQNSKIIVVEGPIASGKTEFCKKLADELDMIAL------PPANMDM 105
+ ++ +VV G SGKT +ADE + P N+
Sbjct: 26 GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIAT 71
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 28.8 bits (65), Expect = 2.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 70 KIIVVEGPIASGKTEFCKKLADEL 93
+IV EG SGKT C + + +
Sbjct: 5 ALIVFEGLDKSGKTTQCMNIMESI 28
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 28.9 bits (64), Expect = 2.7
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDM------IALPPANMDMFYK 108
I+V G SGKT + L+ + L ++ Y+
Sbjct: 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYE 59
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 29.0 bits (64), Expect = 2.9
Identities = 29/198 (14%), Positives = 65/198 (32%), Gaps = 17/198 (8%)
Query: 68 NSKIIVVEGPIASGKTEFCKKLADELDMIALPP--ANMDMFYKRGDFDWRSLDAEWSNEN 125
++K+++V+G GKT+ + + + L P +M +R + + + +
Sbjct: 160 SAKVVLVDGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANASGIIVATKDNVRT 219
Query: 126 LKSYDEKTFCKDPKHFHTIAF-QIRMLQLRFSVYVDALAHMLSTGQGAIV---QRCPFSD 181
+ S+ F + + ML + V+ L M + Q+ P+ +
Sbjct: 220 VDSFLMNYGKGARCQFKRLFIDEGLMLH---TGCVNFLVEMSLCDIAYVYGDTQQIPYIN 276
Query: 182 FIFIEAMDKCGYITKRHKDIYYEITR-------FTLPPLFKPHLVIYLDIPVSKVKENVK 234
+ + + T L ++ H++ S +E V
Sbjct: 277 RVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHFLNQRYEGHVMCTSSEKKSVSQEMVS 336
Query: 235 KRNNPWEVNSPIFNDKYL 252
+ V+ P K L
Sbjct: 337 GAASINPVSKP-LKGKIL 353
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 28.6 bits (65), Expect = 3.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 66 NQNSKIIVVEGPIASGKTEFCKKLADELDMI 96
+ +I ++GP +GK CK +A+ L
Sbjct: 2 TAIAPVITIDGPSGAGKGTLCKAMAEALQWH 32
>3i9v_4 NADH-quinone oxidoreductase subunit 4; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_4* 2fug_4* 3iam_4* 3ias_4*
3m9s_4*
Length = 409
Score = 28.6 bits (65), Expect = 4.0
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 37 DLRRPPPY-PYETRDFKFPWTLMEDTEDRF 65
D+R+ PY YET F P D DR
Sbjct: 247 DVRKAYPYSGYETYTFDVPLGERGDVFDRM 276
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 28.0 bits (63), Expect = 4.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 70 KIIVVEGPIASGKTEFCKKLADEL 93
+IV+EG +GK+ +KL + L
Sbjct: 10 ALIVLEGVDRAGKSTQSRKLVEAL 33
Score = 27.2 bits (61), Expect = 7.7
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 213 LFKPHLVIYLDIPV 226
L KP LV++L + +
Sbjct: 127 LPKPDLVLFLQLQL 140
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 27.8 bits (62), Expect = 4.6
Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 69 SKIIVVEGPIASGKTEFCKKLADE-LDMIALPPANMDMFYKRGDFDWRSLDAEWSNENLK 127
KII+ G SGK+ + ++ + + N D + + + +++ +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI---NRDDYRQSIMAHEERDEYKYTKKKEG 58
Query: 128 SYDEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDA 161
F T + V +
Sbjct: 59 IVTGMQ-------FDTAKSILYGGDSVKGVIISD 85
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein
binding; 2.10A {Plasmodium berghei}
Length = 148
Score = 27.4 bits (60), Expect = 4.9
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 22/114 (19%)
Query: 267 ISDSSELLVYDWSDGGDPEVVVEDIE-----------RIDFDHYDHFSNKMREWRQLTTK 315
I + +++V + + I R + + ++
Sbjct: 36 IENLEKIVVDVLEHDMELTSLDNIIMRIKNNLKNTECRYIIADMPIPTPEGVLRDRIYFI 95
Query: 316 EWN------NLRMLYADEKSDLMTAFNTVERYDCPELAYTGDDMMEIEEKLSKT 363
W+ +MLYA K L+ N + + L T D+ E EE+L
Sbjct: 96 FWSPGLSKPKEKMLYAASKESLVRKINGIFK----SLEIT-CDINEFEEELKAI 144
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA
complex, S4 domain, alpha/beta protein, isomerase,
RNA-binding, rRNA processing; HET: FHU; 3.00A
{Escherichia coli}
Length = 290
Score = 28.0 bits (63), Expect = 5.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 308 EWRQLTTKEWNNLRMLYADEKSD 330
EWR LT E +L L + S+
Sbjct: 220 EWRDLTDDELIDLFKLIENSSSE 242
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 27.8 bits (63), Expect = 5.8
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMI 96
I ++GP +SGK+ K +A +
Sbjct: 18 QIAIDGPASSGKSTVAKIIAKDFGFT 43
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 27.4 bits (62), Expect = 6.3
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMI 96
++ V+GP +GK+ + LA L
Sbjct: 11 VVAVDGPAGTGKSSVSRGLARALGAR 36
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4;
2.30A {Staphylococcus aureus}
Length = 219
Score = 27.4 bits (62), Expect = 6.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 71 IIVVEGPIASGKTEFCKKLADELDMI 96
I ++GP A+GK+ K++A EL MI
Sbjct: 5 NIALDGPAAAGKSTIAKRVASELSMI 30
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics, NPPSFA; HET: ADP TYD; 2.10A
{Thermotoga maritima} PDB: 3hjn_A*
Length = 197
Score = 27.5 bits (62), Expect = 7.0
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 214 FKPHLVIYLDIPVSKVKENVKKRN 237
P L Y+D+ V + + N
Sbjct: 120 LIPDLTFYIDVDVETALKRKGELN 143
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 27.5 bits (62), Expect = 7.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 76 GPIASGKTEFCKKLADEL 93
GP GKTE K LA L
Sbjct: 54 GPTGVGKTELAKTLAATL 71
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 27.9 bits (62), Expect = 7.7
Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 12/108 (11%)
Query: 278 WSDGGDPEVVVEDIERIDFDHYDHFSNKM-------REWRQLTTKEWNNLRMLYADEKSD 330
+S G + I + + H + + +T+ +W+ ++L DEK +
Sbjct: 313 FSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN 372
Query: 331 LM----TAFNTVERYDCPELAYTGDDMMEIEEKLSKTPEFYYTKGFNP 374
+ T R G+ + Y++ F+
Sbjct: 373 KIYFLSTEDLPRRRQLY-SANTVGNFNRQCLSCDLVENCTYFSASFSH 419
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 27.2 bits (61), Expect = 8.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 70 KIIVVEGPIASGKTEFCKKLADEL 93
K+I++EG +GKT C L +L
Sbjct: 6 KLILIEGLDRTGKTTQCNILYKKL 29
Score = 27.2 bits (61), Expect = 8.9
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 213 LFKPHLVIYLDIPVSKVKENVKKRNN 238
L KP L ++L +N +++
Sbjct: 123 LLKPDLTLFLSTQ---DVDNNAEKSG 145
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome,
RNA modifying enzyme, isomerase; 2.60A {Escherichia
coli}
Length = 237
Score = 27.3 bits (61), Expect = 8.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 308 EWRQLTTKEWNNLRMLYADEKSD 330
EWR LT E +L L + S+
Sbjct: 167 EWRDLTDDELIDLFKLIENSSSE 189
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase;
HET: B12 DCA; 2.00A {Propionibacterium freudenreichii
subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A*
3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Length = 727
Score = 27.7 bits (62), Expect = 8.9
Identities = 9/85 (10%), Positives = 24/85 (28%), Gaps = 14/85 (16%)
Query: 290 DIERIDFDHYDHFSNKMREWRQLTTKEWNNLRMLYADEKSDLMTAFNTVERYDCPELAYT 349
+ +D + ++ R + +L K + T E+ L +
Sbjct: 5 RFDSVDLGNAPVPADAARRFEELAAKAGTGEA-------------WETAEQIPVGTL-FN 50
Query: 350 GDDMMEIEEKLSKTPEFYYTKGFNP 374
D +++ + + G
Sbjct: 51 EDVYKDMDWLDTYAGIPPFVHGPYA 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 27.5 bits (62), Expect = 9.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 76 GPIASGKTEFCKKLADEL 93
GP GKTE K LA L
Sbjct: 595 GPTGVGKTELAKTLAATL 612
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 27.6 bits (62), Expect = 9.2
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 76 GPIASGKTEFCKKLADEL--DMIALPPANMDM 105
GP GKTE +L+ L +++ DM
Sbjct: 495 GPTGVGKTEVTVQLSKALGIELLRF-----DM 521
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase,
neuraminidase; HET: SKD; 1.54A {Streptococcus
pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A*
Length = 686
Score = 27.7 bits (60), Expect = 9.9
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 10/78 (12%)
Query: 112 FDWRSLDAEWSNENLKSYDEKTFCKDPKHFHTIAFQIRMLQLRFSVYVDALAHMLSTGQG 171
+ R + + K +T+ F +++YV+ G
Sbjct: 103 VEIRDAQKGINYLFSRPASLWGKHKGQAVENTLVFVSDSKDKTYTMYVN----------G 152
Query: 172 AIVQRCPFSDFIFIEAMD 189
V F+ I ++
Sbjct: 153 IEVFSETVDTFLPISNIN 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.436
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,652,053
Number of extensions: 410610
Number of successful extensions: 1216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1197
Number of HSP's successfully gapped: 118
Length of query: 395
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 299
Effective length of database: 4,021,377
Effective search space: 1202391723
Effective search space used: 1202391723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)