BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6808
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9R1T1|BAF_RAT Barrier-to-autointegration factor OS=Rattus norvegicus GN=Banf1
PE=1 SV=1
Length = 89
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 28 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKS 69
M+TSQKH++FV+EPMGEKPV LAG+GD LGKRLE +GFDK+
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGDALGKRLEERGFDKA 42
>sp|O54962|BAF_MOUSE Barrier-to-autointegration factor OS=Mus musculus GN=Banf1 PE=1
SV=1
Length = 89
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 28 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKS 69
M+TSQKH++FV+EPMGEKPV LAG+GDVL KRLE +GFDK+
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGDVLSKRLEERGFDKA 42
>sp|Q5RBU9|BAF_PONAB Barrier-to-autointegration factor OS=Pongo abelii GN=BANF1 PE=3
SV=1
Length = 89
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 39/42 (92%)
Query: 28 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKS 69
M+TSQKH++FV+EPMGEKPV LAG+G+VLGK+LE +GFDK+
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKA 42
>sp|O75531|BAF_HUMAN Barrier-to-autointegration factor OS=Homo sapiens GN=BANF1 PE=1
SV=1
Length = 89
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 39/42 (92%)
Query: 28 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKS 69
M+TSQKH++FV+EPMGEKPV LAG+G+VLGK+LE +GFDK+
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKA 42
>sp|P61283|BAF_BOVIN Barrier-to-autointegration factor OS=Bos taurus GN=BANF1 PE=3
SV=1
Length = 89
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 39/42 (92%)
Query: 28 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKS 69
M+TSQKH++FV+EPMGEKPV LAG+G+VLGK+LE +GFDK+
Sbjct: 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKA 42
>sp|Q6P026|BAF_DANRE Barrier-to-autointegration factor OS=Danio rerio GN=banf1 PE=1
SV=1
Length = 90
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 37/41 (90%)
Query: 29 STSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKS 69
STSQKH++FV+EPMGEK V LAG+G+VLGKRLE KGFDK+
Sbjct: 3 STSQKHKDFVAEPMGEKSVMALAGIGEVLGKRLEEKGFDKA 43
>sp|Q66KV4|BAFB_XENLA Barrier-to-autointegration factor B OS=Xenopus laevis GN=banf1-b
PE=3 SV=1
Length = 90
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/41 (73%), Positives = 36/41 (87%)
Query: 29 STSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKS 69
STSQKH++FV+EPMGEK V LAG+GD LG+RLE KGFDK+
Sbjct: 3 STSQKHRDFVAEPMGEKSVQCLAGIGDTLGRRLEEKGFDKA 43
>sp|Q5HZM3|BAFL_XENLA Barrier-to-autointegration factor-like protein OS=Xenopus laevis
GN=banf2 PE=3 SV=1
Length = 91
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 37/40 (92%)
Query: 30 TSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKS 69
TSQKH++FVSEPMG+KP+T LAG+G+VLG +LE +GFDK+
Sbjct: 4 TSQKHRDFVSEPMGDKPITALAGIGEVLGGKLEEQGFDKA 43
>sp|Q6NTS2|BAFA_XENLA Barrier-to-autointegration factor A OS=Xenopus laevis GN=banf1-a
PE=1 SV=1
Length = 90
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 35/41 (85%)
Query: 29 STSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKS 69
STSQKH++FV+EPMGEK V LAG+G+ LG RLE KGFDK+
Sbjct: 3 STSQKHRDFVAEPMGEKSVQCLAGIGEALGHRLEEKGFDKA 43
>sp|Q9VLU0|BAF_DROME Barrier-to-autointegration factor OS=Drosophila melanogaster
GN=baf PE=3 SV=1
Length = 90
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 32/39 (82%)
Query: 29 STSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFD 67
TSQKH+NFV+EPMG K VTELAG+G+ LG RL+ GFD
Sbjct: 3 GTSQKHRNFVAEPMGNKSVTELAGIGETLGGRLKDAGFD 41
>sp|Q03565|BAF1_CAEEL Barrier-to-autointegration factor 1 OS=Caenorhabditis elegans
GN=baf-1 PE=1 SV=3
Length = 89
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 28 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKS 69
MSTS KH+ FV EPMG+K VT +AG+G G +L GFDK+
Sbjct: 1 MSTSVKHREFVGEPMGDKEVTCIAGIGPTYGTKLTDAGFDKA 42
>sp|A8XAC6|BAF1_CAEBR Barrier-to-autointegration factor 1 OS=Caenorhabditis briggsae
GN=baf-1 PE=3 SV=1
Length = 89
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 28 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKS 69
MSTS KH+ FV EPMG+K VT +AG+G G +L GFDK+
Sbjct: 1 MSTSVKHREFVGEPMGDKEVTCIAGIGPTYGTKLTDAGFDKA 42
>sp|Q8BVR0|BAFL_MOUSE Barrier-to-autointegration factor-like protein OS=Mus musculus
GN=Banf2 PE=2 SV=1
Length = 90
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 31 SQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKS 69
S + + F+SEP+GEK V + G+ L L +KGF+K+
Sbjct: 5 SPRLRAFLSEPIGEKDVAWVDGISRELAINLVTKGFNKA 43
>sp|Q32PE7|BAFL_BOVIN Barrier-to-autointegration factor-like protein OS=Bos taurus
GN=BANF2 PE=3 SV=1
Length = 90
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 31 SQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKS 69
S + + F+SEP+GEK V + G+ L L +KGF+K+
Sbjct: 5 SPRLRAFLSEPIGEKDVAWVDGISHELAINLVTKGFNKA 43
>sp|Q9H503|BAFL_HUMAN Barrier-to-autointegration factor-like protein OS=Homo sapiens
GN=BANF2 PE=1 SV=1
Length = 90
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 29 STSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKS 69
+ S + + F+SEP+GEK V + G+ L L +KG +K+
Sbjct: 3 NMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKA 43
>sp|B1KD33|DPO4_SHEWM DNA polymerase IV OS=Shewanella woodyi (strain ATCC 51908 / MS32)
GN=dinB PE=3 SV=1
Length = 364
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 20 SPTQELAKMSTSQKHQN--------FVSEPMGEKPVTELAGVGDVLGKRLESKGFDKSIN 71
+P + LAK+++ N +S + P+T++ GVG V GK+LE G
Sbjct: 147 APVKFLAKVASDLNKPNGQYVITPDMISSFITTLPLTKIPGVGKVTGKKLEDIGLTTCGE 206
Query: 72 PQMFPDPDIEEK 83
Q +P ++ E+
Sbjct: 207 LQAYPKSELIER 218
>sp|P53196|RPN14_YEAST 26S proteasome regulatory subunit RPN14 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN14 PE=1 SV=1
Length = 417
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 41 PMGEKPVTELAGVGDV---LGKRLESKGFDKSINPQMFPDPDIEEKVLLFKNPNSLPIPI 97
P+GE + E + +V G S GFD SI + DP+ E + F+ P L +
Sbjct: 323 PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFL-VSN 381
Query: 98 GVEVLGYTKIKNNKSRYPYLDYG 120
EV + + +++S L+ G
Sbjct: 382 DDEVSQFCYVSDDESNGEVLEVG 404
>sp|Q7VK79|MNMG_HELHP tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1)
GN=mnmG PE=3 SV=1
Length = 629
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 17/136 (12%)
Query: 5 PTHWCNSTVHFWPFTSPTQELAKMS-TSQKHQNFVSEPMGEKPV--TELAGVGDVLGKRL 61
P H+ T++F SPTQ ++ T++ + + P+ ++ GVG +
Sbjct: 220 PPHFSYKTINF----SPTQLPCFVTYTNENTHKIIRDNFHRAPLFTGQIEGVGPRYCPSI 275
Query: 62 ESK--GFDKSINPQMFPDPDIEEKVLLFKNPNSLPIPIGVEVLGYTKIKN----NKSRYP 115
E K F Q+F +P +E V + N S +PI V+ IK + +RY
Sbjct: 276 EDKVNRFADKSRHQLFLEPQTQEAVEYYINGLSTSLPIDVQEAVIHSIKGLENAHITRYG 335
Query: 116 Y---LDY-GCTEIHNT 127
Y DY TE+++T
Sbjct: 336 YAIEYDYVEPTELYHT 351
>sp|A8FYV3|DPO4_SHESH DNA polymerase IV OS=Shewanella sediminis (strain HAW-EB3) GN=dinB
PE=3 SV=1
Length = 360
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 36 NFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKSINPQMFPDPDIEEK 83
N + + + P+ ++ GVG V GK+LE G + Q +P+ + E+
Sbjct: 167 NMIPAFVKDLPLIKIPGVGKVTGKKLEDIGLITCSDLQAYPEAALIER 214
>sp|O69754|PHZF_PSEAE Trans-2,3-dihydro-3-hydroxyanthranilate isomerase OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=phzF1 PE=3 SV=2
Length = 278
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 37 FVSEPMGEKPVTELAGVGDVLGKRLESKGFDKSINPQMF---PDPDIEEKVLLFKNPNSL 93
F SEP+ PV D+ G+R++ + +++ F P D + ++ +F N L
Sbjct: 10 FASEPLQGNPVAVFFDCDDLSGERMQRMAREMNLSESTFVLRPQQDGDARIRIFTPVNEL 69
Query: 94 PI 95
P
Sbjct: 70 PF 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,690,491
Number of Sequences: 539616
Number of extensions: 2313033
Number of successful extensions: 3760
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3741
Number of HSP's gapped (non-prelim): 30
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)