Query psy6808
Match_columns 132
No_of_seqs 85 out of 87
Neff 1.9
Searched_HMMs 29240
Date Fri Aug 16 18:54:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ci4_A Protein (barrier-TO-aut 99.9 6.4E-27 2.2E-31 166.9 3.5 46 28-73 1-46 (89)
2 1im4_A DBH; DNA polymerase PAL 93.3 0.044 1.5E-06 41.3 2.6 36 44-79 183-218 (221)
3 1b22_A DNA repair protein RAD5 92.0 0.069 2.3E-06 38.0 2.0 35 42-76 20-56 (114)
4 4dez_A POL IV 1, DNA polymeras 91.9 0.056 1.9E-06 42.3 1.6 39 42-80 175-213 (356)
5 1wcn_A Transcription elongatio 91.1 0.061 2.1E-06 35.1 0.9 35 45-79 7-41 (70)
6 1jx4_A DNA polymerase IV (fami 90.8 0.13 4.5E-06 40.2 2.7 44 33-80 170-213 (352)
7 3bq0_A POL IV, DBH, DNA polyme 90.4 0.13 4.4E-06 40.2 2.3 43 33-79 171-213 (354)
8 1pzn_A RAD51, DNA repair and r 90.1 0.11 3.7E-06 40.9 1.6 38 42-79 32-69 (349)
9 2i1q_A DNA repair and recombin 89.7 0.058 2E-06 40.6 -0.2 35 45-79 3-37 (322)
10 2z43_A DNA repair and recombin 89.5 0.066 2.3E-06 40.9 0.0 43 39-81 6-48 (324)
11 4f4y_A POL IV, DNA polymerase 87.9 0.19 6.6E-06 40.0 1.7 44 34-81 172-215 (362)
12 3osn_A DNA polymerase IOTA; ho 87.2 0.22 7.4E-06 40.8 1.6 35 46-80 235-269 (420)
13 3bqs_A Uncharacterized protein 87.1 0.34 1.1E-05 33.4 2.3 31 42-72 1-31 (93)
14 2aq4_A DNA repair protein REV1 86.9 0.23 7.8E-06 40.5 1.6 34 42-75 238-273 (434)
15 3gqc_A DNA repair protein REV1 84.0 0.41 1.4E-05 40.8 1.8 43 34-80 308-350 (504)
16 1t94_A Polymerase (DNA directe 83.6 0.4 1.4E-05 39.2 1.6 34 42-75 279-312 (459)
17 3pzp_A DNA polymerase kappa; D 82.2 0.48 1.6E-05 40.1 1.5 33 42-74 335-367 (517)
18 4ecq_A DNA polymerase ETA; tra 80.4 0.83 2.8E-05 37.4 2.3 38 44-81 252-290 (435)
19 1xo8_A AT1G01470; structural g 78.6 0.25 8.6E-06 35.7 -1.1 56 27-98 1-58 (151)
20 3mab_A Uncharacterized protein 77.0 1.3 4.4E-05 30.6 2.1 27 46-72 5-31 (93)
21 1gm5_A RECG; helicase, replica 75.5 1.5 5.3E-05 38.8 2.7 40 44-83 114-153 (780)
22 2kp7_A Crossover junction endo 73.5 0.78 2.7E-05 31.1 0.3 20 45-64 58-77 (87)
23 3arc_U Photosystem II 12 kDa e 70.3 1.9 6.4E-05 29.9 1.6 29 45-73 26-55 (97)
24 3mfi_A DNA polymerase ETA; DNA 66.6 2.3 8E-05 36.1 1.8 31 33-66 297-329 (520)
25 1v5w_A DMC1, meiotic recombina 66.2 1.2 4.2E-05 34.5 0.0 36 46-81 26-63 (343)
26 2duy_A Competence protein come 65.5 3 0.0001 26.0 1.7 18 47-64 29-46 (75)
27 2kz3_A Putative uncharacterize 63.1 4.3 0.00015 27.4 2.2 32 42-73 1-32 (83)
28 1s5l_U Photosystem II 12 kDa e 59.5 4.5 0.00015 30.2 2.0 28 47-74 65-93 (134)
29 1vq8_Y 50S ribosomal protein L 58.3 2.1 7.1E-05 33.5 0.0 28 46-73 16-43 (241)
30 1x2i_A HEF helicase/nuclease; 57.3 4.3 0.00015 24.3 1.3 20 47-67 16-35 (75)
31 1kft_A UVRC, excinuclease ABC 55.4 3.9 0.00013 25.6 1.0 21 46-67 25-45 (78)
32 3u5c_S 40S ribosomal protein S 51.8 3.9 0.00013 30.5 0.6 52 46-97 31-83 (146)
33 3im1_A Protein SNU246, PRE-mRN 50.7 3.6 0.00012 31.9 0.2 31 44-74 156-186 (328)
34 3lda_A DNA repair protein RAD5 49.6 4.4 0.00015 32.9 0.6 38 43-80 79-118 (400)
35 1u9l_A Transcription elongatio 48.2 4.8 0.00016 26.2 0.5 28 49-76 10-37 (70)
36 2fmp_A DNA polymerase beta; nu 47.7 9.1 0.00031 30.6 2.2 44 31-74 82-127 (335)
37 1z00_A DNA excision repair pro 46.8 8.7 0.0003 24.4 1.6 21 47-68 21-41 (89)
38 2edu_A Kinesin-like protein KI 46.6 4.4 0.00015 26.6 0.1 19 47-65 72-90 (98)
39 2bcq_A DNA polymerase lambda; 46.4 9.1 0.00031 30.7 2.0 25 48-72 99-123 (335)
40 2a1j_B DNA excision repair pro 45.0 9.6 0.00033 24.5 1.6 18 47-64 34-51 (91)
41 3iz6_M 40S ribosomal protein S 44.1 4.7 0.00016 30.2 -0.0 50 47-96 30-80 (152)
42 2bcq_A DNA polymerase lambda; 41.1 9.3 0.00032 30.6 1.3 18 47-64 59-76 (335)
43 2ihm_A POL MU, DNA polymerase 40.3 13 0.00044 30.1 2.0 31 43-73 100-130 (360)
44 2ihm_A POL MU, DNA polymerase 39.5 12 0.00043 30.2 1.8 19 46-64 62-80 (360)
45 3oig_A Enoyl-[acyl-carrier-pro 39.4 9.8 0.00034 27.0 1.0 17 51-67 19-35 (266)
46 2q0z_X Protein Pro2281; SEC63, 38.9 7.1 0.00024 30.5 0.2 29 44-72 160-188 (339)
47 1jms_A Terminal deoxynucleotid 38.6 13 0.00045 30.4 1.8 19 46-64 81-99 (381)
48 2fmp_A DNA polymerase beta; nu 38.5 11 0.00037 30.2 1.3 18 47-64 59-76 (335)
49 2va8_A SSO2462, SKI2-type heli 35.4 11 0.00036 31.3 0.8 28 46-73 658-685 (715)
50 3vdp_A Recombination protein R 35.3 14 0.00048 29.2 1.4 30 27-62 14-43 (212)
51 1yyc_A LEA protein, putative l 35.2 11 0.00039 28.1 0.8 57 26-98 23-81 (174)
52 2a1j_A DNA repair endonuclease 34.6 15 0.00052 22.7 1.3 18 47-64 6-23 (63)
53 4fs3_A Enoyl-[acyl-carrier-pro 34.3 14 0.00047 26.9 1.1 24 52-78 19-42 (256)
54 1jms_A Terminal deoxynucleotid 33.0 20 0.00067 29.4 2.0 31 43-73 119-149 (381)
55 2zj8_A DNA helicase, putative 31.6 17 0.0006 30.2 1.5 29 45-73 646-674 (720)
56 1q9u_A Uncharacterized protein 30.9 12 0.00041 25.1 0.3 44 57-101 39-85 (130)
57 1dgs_A DNA ligase; AMP complex 30.7 58 0.002 29.1 4.7 58 4-69 402-465 (667)
58 2i5h_A Hypothetical protein AF 30.2 23 0.00078 28.0 1.9 18 46-63 133-150 (205)
59 3guy_A Short-chain dehydrogena 30.0 14 0.00048 25.7 0.5 25 51-78 11-35 (230)
60 3asu_A Short-chain dehydrogena 29.9 20 0.00069 25.6 1.4 17 51-67 10-26 (248)
61 1vdd_A Recombination protein R 29.8 19 0.00067 28.8 1.4 16 47-62 14-29 (228)
62 2w9m_A Polymerase X; SAXS, DNA 29.5 26 0.00087 29.6 2.2 30 44-73 96-125 (578)
63 2xzm_M RPS18E; ribosome, trans 29.3 5.3 0.00018 30.0 -1.8 51 47-97 32-83 (155)
64 2nlv_A XISI protein-like; XISI 29.2 28 0.00095 25.0 2.0 32 51-82 74-105 (112)
65 4gfj_A Topoisomerase V; helix- 28.6 18 0.00061 33.0 1.1 22 43-64 466-487 (685)
66 3o6x_A Glutamine synthetase; t 28.4 8.4 0.00029 35.2 -1.0 23 28-51 96-119 (729)
67 2pd4_A Enoyl-[acyl-carrier-pro 28.4 21 0.00073 25.6 1.3 26 51-79 18-43 (275)
68 3nrc_A Enoyl-[acyl-carrier-pro 28.3 19 0.00064 26.1 1.0 25 51-78 38-62 (280)
69 1zmo_A Halohydrin dehalogenase 28.3 23 0.00078 25.0 1.4 16 51-66 11-26 (244)
70 3o38_A Short chain dehydrogena 28.2 18 0.00063 25.5 0.9 21 47-67 27-49 (266)
71 2nwv_A XISI protein-like; YP_3 28.2 29 0.001 25.1 2.0 32 51-82 76-107 (114)
72 1zmt_A Haloalcohol dehalogenas 28.1 23 0.00078 25.1 1.4 17 51-67 11-27 (254)
73 2wyu_A Enoyl-[acyl carrier pro 28.1 18 0.00063 25.8 0.9 25 51-78 20-44 (261)
74 1z00_B DNA repair endonuclease 27.6 23 0.00078 23.5 1.3 18 47-64 20-37 (84)
75 3l6e_A Oxidoreductase, short-c 27.5 14 0.00049 26.2 0.2 17 51-67 13-29 (235)
76 3k31_A Enoyl-(acyl-carrier-pro 27.4 20 0.00069 26.4 1.0 29 47-78 35-66 (296)
77 2p6r_A Afuhel308 helicase; pro 27.2 17 0.00057 30.2 0.6 28 46-73 633-660 (702)
78 3l77_A Short-chain alcohol deh 27.0 15 0.00051 25.4 0.2 17 51-67 12-28 (235)
79 2hi1_A 4-hydroxythreonine-4-ph 26.9 20 0.00069 29.5 1.1 34 49-83 15-49 (330)
80 3qiv_A Short-chain dehydrogena 26.7 15 0.00052 25.7 0.2 18 50-67 18-35 (253)
81 3i1j_A Oxidoreductase, short c 26.6 15 0.00052 25.5 0.2 19 49-67 22-40 (247)
82 3ek2_A Enoyl-(acyl-carrier-pro 26.5 21 0.00071 25.0 0.9 16 51-66 26-41 (271)
83 3i4f_A 3-oxoacyl-[acyl-carrier 26.3 16 0.00053 25.8 0.2 17 50-66 16-32 (264)
84 2nwq_A Probable short-chain de 26.2 25 0.00087 25.7 1.4 18 50-67 30-47 (272)
85 1u7z_A Coenzyme A biosynthesis 26.0 40 0.0014 25.8 2.5 15 52-66 35-49 (226)
86 3lt0_A Enoyl-ACP reductase; tr 25.6 23 0.00077 26.5 1.0 16 52-67 15-30 (329)
87 1d7o_A Enoyl-[acyl-carrier pro 25.3 22 0.00076 25.7 0.9 17 51-67 20-36 (297)
88 3ory_A Flap endonuclease 1; hy 25.1 19 0.00066 29.2 0.6 54 40-93 245-303 (363)
89 3o26_A Salutaridine reductase; 25.0 17 0.00058 25.7 0.2 17 50-66 21-37 (311)
90 2zjr_L 50S ribosomal protein L 25.0 24 0.00083 25.2 1.1 23 47-69 65-87 (114)
91 3orf_A Dihydropteridine reduct 24.8 28 0.00095 24.7 1.3 26 50-78 31-56 (251)
92 3h7a_A Short chain dehydrogena 24.8 17 0.00059 26.0 0.2 26 50-78 16-41 (252)
93 1sby_A Alcohol dehydrogenase; 24.8 20 0.00068 25.2 0.6 17 51-67 15-31 (254)
94 3ucx_A Short chain dehydrogena 24.7 23 0.0008 25.3 1.0 18 50-67 20-37 (264)
95 4iiu_A 3-oxoacyl-[acyl-carrier 24.7 17 0.00059 25.9 0.2 19 49-67 34-52 (267)
96 1qsg_A Enoyl-[acyl-carrier-pro 24.6 23 0.0008 25.2 0.9 25 51-78 21-45 (265)
97 3edm_A Short chain dehydrogena 24.4 18 0.0006 26.0 0.2 18 50-67 17-34 (259)
98 3tpc_A Short chain alcohol deh 24.4 27 0.00093 24.7 1.2 26 50-78 16-41 (257)
99 1uay_A Type II 3-hydroxyacyl-C 24.3 16 0.00056 24.8 0.1 17 51-67 12-28 (242)
100 1fjh_A 3alpha-hydroxysteroid d 24.1 18 0.00062 25.1 0.2 17 51-67 11-27 (257)
101 2jtq_A Phage shock protein E; 24.0 40 0.0014 20.2 1.8 18 55-72 55-72 (85)
102 4iin_A 3-ketoacyl-acyl carrier 24.0 18 0.00062 25.9 0.2 19 49-67 37-55 (271)
103 3icc_A Putative 3-oxoacyl-(acy 24.0 18 0.00063 25.1 0.2 17 50-66 16-32 (255)
104 3f9i_A 3-oxoacyl-[acyl-carrier 24.0 18 0.00063 25.2 0.2 17 50-66 23-39 (249)
105 3grk_A Enoyl-(acyl-carrier-pro 23.7 25 0.00084 26.0 0.9 17 51-67 43-59 (293)
106 3mtx_A Protein MD-1; LY86, RP1 23.7 17 0.00058 27.7 0.0 21 101-121 98-119 (151)
107 1kea_A Possible G-T mismatches 23.7 36 0.0012 25.2 1.8 25 45-69 115-139 (221)
108 3lyl_A 3-oxoacyl-(acyl-carrier 23.7 19 0.00064 25.1 0.2 26 50-78 14-39 (247)
109 3f1l_A Uncharacterized oxidore 23.6 19 0.00064 25.7 0.2 17 50-66 21-37 (252)
110 3pxx_A Carveol dehydrogenase; 23.5 19 0.00064 25.6 0.2 17 51-67 20-36 (287)
111 3p19_A BFPVVD8, putative blue 23.5 21 0.00073 25.9 0.5 19 49-67 24-42 (266)
112 3n74_A 3-ketoacyl-(acyl-carrie 23.5 19 0.00065 25.3 0.2 16 51-66 19-34 (261)
113 3hix_A ALR3790 protein; rhodan 23.3 39 0.0013 21.4 1.7 29 44-72 52-83 (106)
114 3gvc_A Oxidoreductase, probabl 23.2 26 0.00089 25.7 1.0 18 49-66 37-54 (277)
115 1dhr_A Dihydropteridine reduct 23.2 18 0.00062 25.4 0.1 17 51-67 17-33 (241)
116 3osu_A 3-oxoacyl-[acyl-carrier 23.2 19 0.00066 25.4 0.2 17 51-67 14-30 (246)
117 2ekp_A 2-deoxy-D-gluconate 3-d 23.0 20 0.00067 25.2 0.2 17 51-67 12-28 (239)
118 1edo_A Beta-keto acyl carrier 23.0 20 0.00067 24.7 0.2 17 51-67 11-27 (244)
119 4e3z_A Putative oxidoreductase 23.0 29 0.00099 24.8 1.1 35 33-67 14-52 (272)
120 3op4_A 3-oxoacyl-[acyl-carrier 23.0 20 0.00067 25.6 0.2 18 50-67 18-35 (248)
121 3sx2_A Putative 3-ketoacyl-(ac 23.0 20 0.00067 25.7 0.2 18 50-67 22-39 (278)
122 2h7i_A Enoyl-[acyl-carrier-pro 22.9 26 0.0009 25.0 0.9 18 50-67 18-35 (269)
123 1cyd_A Carbonyl reductase; sho 22.8 20 0.00068 24.6 0.2 17 51-67 17-33 (244)
124 3gdg_A Probable NADP-dependent 22.7 27 0.00091 24.6 0.9 17 51-67 32-48 (267)
125 3dii_A Short-chain dehydrogena 22.6 20 0.00069 25.4 0.2 16 51-66 12-27 (247)
126 3oid_A Enoyl-[acyl-carrier-pro 22.5 20 0.0007 25.7 0.2 17 51-67 14-30 (258)
127 3ppi_A 3-hydroxyacyl-COA dehyd 22.4 20 0.0007 25.6 0.2 17 50-66 39-55 (281)
128 1pu6_A 3-methyladenine DNA gly 22.3 39 0.0013 25.1 1.8 25 45-69 121-145 (218)
129 4e6p_A Probable sorbitol dehyd 22.3 21 0.00071 25.4 0.2 18 50-67 17-34 (259)
130 3ezl_A Acetoacetyl-COA reducta 22.2 17 0.00057 25.5 -0.3 18 50-67 22-39 (256)
131 2uvd_A 3-oxoacyl-(acyl-carrier 22.2 21 0.00071 25.1 0.2 17 51-67 14-30 (246)
132 2zat_A Dehydrogenase/reductase 22.2 21 0.00071 25.3 0.2 17 50-66 23-39 (260)
133 2wsb_A Galactitol dehydrogenas 22.2 21 0.00071 24.7 0.2 18 50-67 20-37 (254)
134 2cfc_A 2-(R)-hydroxypropyl-COM 22.1 21 0.00072 24.6 0.2 16 51-66 12-27 (250)
135 2ew8_A (S)-1-phenylethanol deh 22.1 21 0.00072 25.3 0.2 18 50-67 16-33 (249)
136 2jah_A Clavulanic acid dehydro 22.1 21 0.00072 25.3 0.2 18 50-67 16-33 (247)
137 2ehd_A Oxidoreductase, oxidore 22.1 21 0.00072 24.5 0.2 18 50-67 14-31 (234)
138 3tl3_A Short-chain type dehydr 22.1 19 0.00066 25.5 0.1 18 50-67 18-35 (257)
139 3q8k_A Flap endonuclease 1; he 22.1 39 0.0013 27.0 1.8 26 39-64 226-251 (341)
140 2nm0_A Probable 3-oxacyl-(acyl 22.0 34 0.0012 24.6 1.4 17 50-66 30-46 (253)
141 1zk4_A R-specific alcohol dehy 22.0 21 0.00072 24.6 0.2 18 50-67 15-32 (251)
142 3is3_A 17BETA-hydroxysteroid d 22.0 21 0.00072 25.7 0.2 17 50-66 27-43 (270)
143 1gmx_A GLPE protein; transfera 21.9 41 0.0014 21.1 1.6 19 54-72 71-89 (108)
144 3gk3_A Acetoacetyl-COA reducta 21.9 20 0.00068 25.7 0.1 18 50-67 34-51 (269)
145 1iy8_A Levodione reductase; ox 21.8 21 0.00073 25.4 0.2 18 50-67 22-39 (267)
146 2ptg_A Enoyl-acyl carrier redu 21.8 28 0.00097 25.6 0.9 18 50-67 20-37 (319)
147 4eso_A Putative oxidoreductase 21.8 21 0.00073 25.6 0.2 17 50-66 17-33 (255)
148 3imf_A Short chain dehydrogena 21.8 21 0.00073 25.4 0.2 17 50-66 15-31 (257)
149 3rwb_A TPLDH, pyridoxal 4-dehy 21.8 21 0.00073 25.4 0.2 16 51-66 16-31 (247)
150 2o2s_A Enoyl-acyl carrier redu 21.8 27 0.00091 25.8 0.8 17 51-67 21-37 (315)
151 3pk0_A Short-chain dehydrogena 21.7 21 0.00073 25.6 0.2 17 50-66 19-35 (262)
152 3r8s_O 50S ribosomal protein L 21.7 30 0.001 24.4 1.0 26 44-69 64-89 (116)
153 1hxh_A 3BETA/17BETA-hydroxyste 21.6 22 0.00074 25.2 0.2 17 51-67 16-32 (253)
154 3tfo_A Putative 3-oxoacyl-(acy 21.6 22 0.00074 26.1 0.2 17 51-67 14-30 (264)
155 2bgw_A XPF endonuclease; hydro 21.6 31 0.0011 24.9 1.1 18 47-64 164-181 (219)
156 3v2g_A 3-oxoacyl-[acyl-carrier 21.5 22 0.00075 25.9 0.2 18 50-67 40-57 (271)
157 2hq1_A Glucose/ribitol dehydro 21.4 22 0.00076 24.5 0.2 16 51-66 15-30 (247)
158 1ooe_A Dihydropteridine reduct 21.4 18 0.0006 25.3 -0.3 16 51-66 13-28 (236)
159 3d7q_A XISI protein-like; stru 21.4 28 0.00095 25.1 0.8 32 51-82 74-105 (112)
160 1uzm_A 3-oxoacyl-[acyl-carrier 21.4 22 0.00076 25.2 0.2 17 51-67 25-41 (247)
161 4dmm_A 3-oxoacyl-[acyl-carrier 21.4 22 0.00076 25.8 0.2 19 49-67 36-54 (269)
162 3gem_A Short chain dehydrogena 21.3 25 0.00086 25.5 0.5 26 50-78 36-61 (260)
163 3c65_A Uvrabc system protein C 21.2 20 0.00069 28.0 0.0 31 34-64 162-192 (226)
164 3afn_B Carbonyl reductase; alp 21.2 22 0.00077 24.4 0.2 18 50-67 16-33 (258)
165 3ak4_A NADH-dependent quinucli 21.2 22 0.00077 25.1 0.2 16 51-66 22-37 (263)
166 4f92_B U5 small nuclear ribonu 21.2 20 0.00069 34.6 -0.0 42 45-87 1557-1598(1724)
167 2k5l_A FEOA; structure, NESG, 21.1 37 0.0013 21.3 1.3 29 41-70 8-37 (81)
168 3uxy_A Short-chain dehydrogena 21.1 22 0.00077 25.8 0.2 17 50-66 37-53 (266)
169 2bgk_A Rhizome secoisolaricire 21.1 23 0.00077 24.9 0.2 17 50-66 25-41 (278)
170 3nyw_A Putative oxidoreductase 21.1 21 0.00071 25.6 0.1 17 50-66 16-32 (250)
171 3gaf_A 7-alpha-hydroxysteroid 21.1 21 0.00071 25.6 0.1 18 50-67 21-38 (256)
172 3awd_A GOX2181, putative polyo 21.1 23 0.00078 24.6 0.2 17 50-66 22-38 (260)
173 3ctm_A Carbonyl reductase; alc 21.1 28 0.00096 24.7 0.7 19 49-67 42-60 (279)
174 2ag5_A DHRS6, dehydrogenase/re 21.0 23 0.00078 24.9 0.2 16 51-66 16-31 (246)
175 3pgx_A Carveol dehydrogenase; 21.0 23 0.00078 25.5 0.2 17 50-66 24-40 (280)
176 1nff_A Putative oxidoreductase 21.0 23 0.00078 25.4 0.2 18 50-67 16-33 (260)
177 1uls_A Putative 3-oxoacyl-acyl 21.0 23 0.00078 25.1 0.2 17 51-67 15-31 (245)
178 2p91_A Enoyl-[acyl-carrier-pro 21.0 31 0.001 24.9 0.9 25 51-78 33-57 (285)
179 1mxh_A Pteridine reductase 2; 20.9 23 0.00078 25.2 0.2 16 51-66 21-36 (276)
180 1spx_A Short-chain reductase f 20.9 23 0.00079 25.2 0.2 18 50-67 15-32 (278)
181 2fwm_X 2,3-dihydro-2,3-dihydro 20.9 23 0.00079 25.1 0.2 26 51-79 17-42 (250)
182 1ovy_A 50S ribosomal protein L 20.8 31 0.0011 24.7 1.0 25 45-69 69-93 (120)
183 2d1y_A Hypothetical protein TT 20.8 23 0.00079 25.2 0.2 16 51-66 16-31 (256)
184 2o23_A HADH2 protein; HSD17B10 20.8 23 0.00079 24.6 0.2 18 50-67 21-38 (265)
185 3sju_A Keto reductase; short-c 20.8 23 0.00079 25.8 0.2 18 50-67 33-50 (279)
186 3uf0_A Short-chain dehydrogena 20.8 23 0.00079 25.8 0.2 18 50-67 40-57 (273)
187 3lf2_A Short chain oxidoreduct 20.8 23 0.00079 25.4 0.2 25 50-77 17-41 (265)
188 3u5t_A 3-oxoacyl-[acyl-carrier 20.7 21 0.00073 25.9 0.1 18 50-67 36-53 (267)
189 3ai3_A NADPH-sorbose reductase 20.7 23 0.0008 25.0 0.2 17 50-66 16-32 (263)
190 1o5i_A 3-oxoacyl-(acyl carrier 20.7 23 0.0008 25.2 0.2 18 50-67 28-45 (249)
191 3ijr_A Oxidoreductase, short c 20.7 23 0.0008 26.0 0.2 26 50-78 56-81 (291)
192 3r3s_A Oxidoreductase; structu 20.6 23 0.0008 26.0 0.2 17 51-67 59-75 (294)
193 1ixr_A Holliday junction DNA h 20.6 43 0.0015 25.0 1.7 19 45-63 107-125 (191)
194 3v2d_S 50S ribosomal protein L 20.6 34 0.0012 24.3 1.1 24 46-69 62-85 (112)
195 2pnf_A 3-oxoacyl-[acyl-carrier 20.6 24 0.00081 24.2 0.2 18 50-67 16-33 (248)
196 3uve_A Carveol dehydrogenase ( 20.6 23 0.0008 25.5 0.2 18 50-67 20-37 (286)
197 2ae2_A Protein (tropinone redu 20.5 24 0.00081 25.1 0.2 18 50-67 18-35 (260)
198 3un1_A Probable oxidoreductase 20.5 24 0.00081 25.5 0.2 17 50-66 37-53 (260)
199 3tsc_A Putative oxidoreductase 20.5 24 0.00081 25.4 0.2 18 50-67 20-37 (277)
200 3s55_A Putative short-chain de 20.5 24 0.00081 25.4 0.2 18 50-67 19-36 (281)
201 3rkr_A Short chain oxidoreduct 20.5 24 0.00081 25.2 0.2 19 49-67 37-55 (262)
202 2ph3_A 3-oxoacyl-[acyl carrier 20.5 22 0.00075 24.3 0.1 16 51-66 11-26 (245)
203 2dkn_A 3-alpha-hydroxysteroid 20.5 24 0.00081 24.0 0.2 17 51-67 11-27 (255)
204 3v2h_A D-beta-hydroxybutyrate 20.5 24 0.00081 25.8 0.2 18 49-66 33-50 (281)
205 1hdc_A 3-alpha, 20 beta-hydrox 20.4 24 0.00081 25.1 0.2 17 51-67 15-31 (254)
206 1x1t_A D(-)-3-hydroxybutyrate 20.4 24 0.00081 25.0 0.2 17 51-67 14-30 (260)
207 3ftp_A 3-oxoacyl-[acyl-carrier 20.4 24 0.00081 25.7 0.2 17 50-66 37-53 (270)
208 2qq5_A DHRS1, dehydrogenase/re 20.4 24 0.00082 25.0 0.2 17 50-66 14-30 (260)
209 2gk4_A Conserved hypothetical 20.3 87 0.003 24.1 3.4 22 46-67 19-45 (232)
210 3tzq_B Short-chain type dehydr 20.2 24 0.00083 25.4 0.2 17 51-67 21-37 (271)
211 1zem_A Xylitol dehydrogenase; 20.2 24 0.00083 25.1 0.2 17 51-67 17-33 (262)
212 3vtz_A Glucose 1-dehydrogenase 20.2 24 0.00083 25.6 0.2 18 50-67 23-40 (269)
213 3d3w_A L-xylulose reductase; u 20.2 24 0.00083 24.3 0.2 17 51-67 17-33 (244)
214 2dtx_A Glucose 1-dehydrogenase 20.1 24 0.00084 25.4 0.2 17 50-66 17-33 (264)
215 1geg_A Acetoin reductase; SDR 20.0 25 0.00084 24.9 0.2 16 51-66 12-27 (256)
No 1
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=99.93 E-value=6.4e-27 Score=166.92 Aligned_cols=46 Identities=65% Similarity=1.076 Sum_probs=45.0
Q ss_pred ccccHHHHhhhcCCCCCCCccccCCCchHHHHhHHhcCCCccceee
Q psy6808 28 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKSINPQ 73 (132)
Q Consensus 28 stTSqKHRnFVsEPMGEK~Vt~LAGIGpvLGkrLeekGFDKAYvVl 73 (132)
|+|||||||||+||||||+|++|||||+++|+||+++|||||||||
T Consensus 1 ~~ts~Kh~~Fv~EPmgeK~V~evpGIG~~~~~~L~~~Gf~kAy~lL 46 (89)
T 1ci4_A 1 MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVL 46 (89)
T ss_dssp CCSCHHHHHHHTSCCTTCCGGGSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred CcccHHHHHHHhCCCCCCCcccCCCcCHHHHHHHHHcCccHHHHHH
Confidence 6899999999999999999999999999999999999999999997
No 2
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=93.32 E-value=0.044 Score=41.29 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=26.4
Q ss_pred CCCccccCCCchHHHHhHHhcCCCccceeeecCCCC
Q psy6808 44 EKPVTELAGVGDVLGKRLESKGFDKSINPQMFPDPD 79 (132)
Q Consensus 44 EK~Vt~LAGIGpvLGkrLeekGFDKAYvVl~f~~~~ 79 (132)
.-||++|+|||+.++++|++.|+....+++-.+...
T Consensus 183 ~lpv~~l~giG~~~~~~L~~~Gi~TigdL~~~~~~~ 218 (221)
T 1im4_A 183 ELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNE 218 (221)
T ss_dssp TCBGGGSTTCCHHHHHHHHHTTCCBTTC--------
T ss_pred hCCcccccCCCHHHHHHHHHcCCCcHHHHHCCCHHH
Confidence 358999999999999999999999999998776543
No 3
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=92.01 E-value=0.069 Score=37.97 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=30.7
Q ss_pred CCCCCccccC--CCchHHHHhHHhcCCCccceeeecC
Q psy6808 42 MGEKPVTELA--GVGDVLGKRLESKGFDKSINPQMFP 76 (132)
Q Consensus 42 MGEK~Vt~LA--GIGpvLGkrLeekGFDKAYvVl~f~ 76 (132)
=|..+|.+|+ |||+...++|.++||...-.|.+.+
T Consensus 20 ~~~~~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~ 56 (114)
T 1b22_A 20 FGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAP 56 (114)
T ss_dssp SSCCCHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSB
T ss_pred cCCccHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCC
Confidence 3445899999 9999999999999999999888776
No 4
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=91.93 E-value=0.056 Score=42.33 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=33.1
Q ss_pred CCCCCccccCCCchHHHHhHHhcCCCccceeeecCCCCh
Q psy6808 42 MGEKPVTELAGVGDVLGKRLESKGFDKSINPQMFPDPDI 80 (132)
Q Consensus 42 MGEK~Vt~LAGIGpvLGkrLeekGFDKAYvVl~f~~~~~ 80 (132)
|..-||.+|+|||+.++++|++.|...+.++.-.+...+
T Consensus 175 L~~lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L 213 (356)
T 4dez_A 175 MGDRPPDALWGVGPKTTKKLAAMGITTVADLAVTDPSVL 213 (356)
T ss_dssp HTTSCGGGSTTCCHHHHHHHHHTTCCSHHHHHTSCHHHH
T ss_pred hhcCcHHHHcCCchhHHHHHHHcCCCeecccccCCHHHH
Confidence 446799999999999999999999999999876654443
No 5
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=91.09 E-value=0.061 Score=35.10 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=28.2
Q ss_pred CCccccCCCchHHHHhHHhcCCCccceeeecCCCC
Q psy6808 45 KPVTELAGVGDVLGKRLESKGFDKSINPQMFPDPD 79 (132)
Q Consensus 45 K~Vt~LAGIGpvLGkrLeekGFDKAYvVl~f~~~~ 79 (132)
.++.+|+|||+..+.+|.++||...-.|.+....+
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~e 41 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDD 41 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHH
T ss_pred hHHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHH
Confidence 35778999999999999999998877766654333
No 6
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=90.81 E-value=0.13 Score=40.16 Aligned_cols=44 Identities=14% Similarity=0.418 Sum_probs=35.2
Q ss_pred HHHhhhcCCCCCCCccccCCCchHHHHhHHhcCCCccceeeecCCCCh
Q psy6808 33 KHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKSINPQMFPDPDI 80 (132)
Q Consensus 33 KHRnFVsEPMGEK~Vt~LAGIGpvLGkrLeekGFDKAYvVl~f~~~~~ 80 (132)
.-+.|+. .-||++|+|||+.++++|++.|+....++.-.+...+
T Consensus 170 ~~~~~L~----~lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L 213 (352)
T 1jx4_A 170 EVKRLIR----ELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKL 213 (352)
T ss_dssp HHHHHHH----HSBGGGSTTCCHHHHHHHHTTTCCBGGGGGSSCHHHH
T ss_pred HHHHHHH----hCCCCcccccCHHHHHHHHHcCCchHHHHHCCCHHHH
Confidence 4455554 3589999999999999999999999999987654333
No 7
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=90.41 E-value=0.13 Score=40.25 Aligned_cols=43 Identities=28% Similarity=0.451 Sum_probs=34.5
Q ss_pred HHHhhhcCCCCCCCccccCCCchHHHHhHHhcCCCccceeeecCCCC
Q psy6808 33 KHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKSINPQMFPDPD 79 (132)
Q Consensus 33 KHRnFVsEPMGEK~Vt~LAGIGpvLGkrLeekGFDKAYvVl~f~~~~ 79 (132)
.-+.|+. .-||++|+|||+.++++|++.|+....++.-.+...
T Consensus 171 ~~~~~L~----~lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~ 213 (354)
T 3bq0_A 171 EVQDFLN----ELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNE 213 (354)
T ss_dssp GHHHHHH----HCBSTTSTTCCHHHHHHHTTTTCCBGGGGGGSCHHH
T ss_pred HHHHHHH----hCCcccccCcCHHHHHHHHHcCCccHHHHhcCCHHH
Confidence 3445554 348999999999999999999999999998765433
No 8
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.13 E-value=0.11 Score=40.86 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=31.6
Q ss_pred CCCCCccccCCCchHHHHhHHhcCCCccceeeecCCCC
Q psy6808 42 MGEKPVTELAGVGDVLGKRLESKGFDKSINPQMFPDPD 79 (132)
Q Consensus 42 MGEK~Vt~LAGIGpvLGkrLeekGFDKAYvVl~f~~~~ 79 (132)
|+..++.+||||++...++|+++||...-.+++..-.+
T Consensus 32 ~~~~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~ 69 (349)
T 1pzn_A 32 KIIRSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIE 69 (349)
T ss_dssp ---CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHH
T ss_pred cccccHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHH
Confidence 66678999999999999999999999999888876544
No 9
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.72 E-value=0.058 Score=40.57 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=29.1
Q ss_pred CCccccCCCchHHHHhHHhcCCCccceeeecCCCC
Q psy6808 45 KPVTELAGVGDVLGKRLESKGFDKSINPQMFPDPD 79 (132)
Q Consensus 45 K~Vt~LAGIGpvLGkrLeekGFDKAYvVl~f~~~~ 79 (132)
.++.+|+||++.++++|+++||..+-.++..+-++
T Consensus 3 ~~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~ 37 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGE 37 (322)
T ss_dssp --CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHH
T ss_pred ccHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHH
Confidence 47889999999999999999999998888766443
No 10
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.50 E-value=0.066 Score=40.91 Aligned_cols=43 Identities=14% Similarity=0.284 Sum_probs=0.0
Q ss_pred cCCCCCCCccccCCCchHHHHhHHhcCCCccceeeecCCCChh
Q psy6808 39 SEPMGEKPVTELAGVGDVLGKRLESKGFDKSINPQMFPDPDIE 81 (132)
Q Consensus 39 sEPMGEK~Vt~LAGIGpvLGkrLeekGFDKAYvVl~f~~~~~~ 81 (132)
+++=+..++.+|+||++...++|+++||..+-.+++.+-+++-
T Consensus 6 ~~~~~~~~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~ 48 (324)
T 2z43_A 6 EQKKNIKTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLS 48 (324)
T ss_dssp -------------------------------------------
T ss_pred cCCCCCccHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHH
Confidence 3445566899999999999999999999999999988866643
No 11
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=87.94 E-value=0.19 Score=40.05 Aligned_cols=44 Identities=30% Similarity=0.480 Sum_probs=35.4
Q ss_pred HHhhhcCCCCCCCccccCCCchHHHHhHHhcCCCccceeeecCCCChh
Q psy6808 34 HQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKSINPQMFPDPDIE 81 (132)
Q Consensus 34 HRnFVsEPMGEK~Vt~LAGIGpvLGkrLeekGFDKAYvVl~f~~~~~~ 81 (132)
-+.|+. .-||++|+|||+.++++|++.|+....++.-.+...+.
T Consensus 172 ~~~~L~----~lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~ 215 (362)
T 4f4y_A 172 VQDFLN----ELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELE 215 (362)
T ss_dssp HHHHHH----TCBSTTSTTCCSTTHHHHHHTTCCBGGGGTTSCHHHHH
T ss_pred HHHHHH----hCChhhccCCCHHHHHHHHHcCCChHHHHhcCCHHHHH
Confidence 345554 34899999999999999999999999998876644443
No 12
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=87.15 E-value=0.22 Score=40.80 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=30.9
Q ss_pred CccccCCCchHHHHhHHhcCCCccceeeecCCCCh
Q psy6808 46 PVTELAGVGDVLGKRLESKGFDKSINPQMFPDPDI 80 (132)
Q Consensus 46 ~Vt~LAGIGpvLGkrLeekGFDKAYvVl~f~~~~~ 80 (132)
+|++|+|||+.++++|++.|.....+|.-++...+
T Consensus 235 pv~~l~GIG~~t~~~L~~lGI~TigdLa~~~~~~L 269 (420)
T 3osn_A 235 HIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKIL 269 (420)
T ss_dssp SGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHH
T ss_pred cHHHccCCCHHHHHHHHHhCCCcHHHHhhCCHHHH
Confidence 59999999999999999999999999988765444
No 13
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=87.09 E-value=0.34 Score=33.38 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=25.4
Q ss_pred CCCCCccccCCCchHHHHhHHhcCCCcccee
Q psy6808 42 MGEKPVTELAGVGDVLGKRLESKGFDKSINP 72 (132)
Q Consensus 42 MGEK~Vt~LAGIGpvLGkrLeekGFDKAYvV 72 (132)
|.-+..++||+||+.+.+.|.+.|+..+-++
T Consensus 1 ~~~~~L~~LPNiG~~~e~~L~~vGI~s~e~L 31 (93)
T 3bqs_A 1 MSLANLSELPNIGKVLEQDLIKAGIKTPVEL 31 (93)
T ss_dssp -CCSCGGGSTTCCHHHHHHHHHTTCCSHHHH
T ss_pred CChHHhhcCCCCCHHHHHHHHHcCCCCHHHH
Confidence 3446789999999999999999999876554
No 14
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=86.85 E-value=0.23 Score=40.45 Aligned_cols=34 Identities=24% Similarity=0.187 Sum_probs=30.5
Q ss_pred CCCCCccccCCCchHHHHhHHh--cCCCccceeeec
Q psy6808 42 MGEKPVTELAGVGDVLGKRLES--KGFDKSINPQMF 75 (132)
Q Consensus 42 MGEK~Vt~LAGIGpvLGkrLee--kGFDKAYvVl~f 75 (132)
|..-||++|+|||+.++++|++ .|+..+.++.-.
T Consensus 238 l~~lpv~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~ 273 (434)
T 2aq4_A 238 WSSFKLDDLPGVGHSTLSRLESTFDSPHSLNDLRKR 273 (434)
T ss_dssp HTTCCGGGSTTCCHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred hhcCCcccccCcCHHHHHHHHHhcCCceEHHHHHhc
Confidence 4567999999999999999999 999999888766
No 15
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=84.01 E-value=0.41 Score=40.81 Aligned_cols=43 Identities=26% Similarity=0.419 Sum_probs=34.7
Q ss_pred HHhhhcCCCCCCCccccCCCchHHHHhHHhcCCCccceeeecCCCCh
Q psy6808 34 HQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKSINPQMFPDPDI 80 (132)
Q Consensus 34 HRnFVsEPMGEK~Vt~LAGIGpvLGkrLeekGFDKAYvVl~f~~~~~ 80 (132)
-+.|+. .-||.+|+|||+.++++|++.|+..+.+|.-.+...+
T Consensus 308 ~~~~L~----~LPV~~l~GIG~~t~~kL~~lGI~TigDLa~~~~~~L 350 (504)
T 3gqc_A 308 VDDFIR----GQLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKL 350 (504)
T ss_dssp HHHHHH----HSBGGGSTTCCHHHHHHHHHTTCCBHHHHTTSCHHHH
T ss_pred HHHHHh----cCChhHhhCcCHHHHHHHHHcCCCcHHHHHhccHHHH
Confidence 345554 3599999999999999999999999998887654444
No 16
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=83.59 E-value=0.4 Score=39.17 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=29.6
Q ss_pred CCCCCccccCCCchHHHHhHHhcCCCccceeeec
Q psy6808 42 MGEKPVTELAGVGDVLGKRLESKGFDKSINPQMF 75 (132)
Q Consensus 42 MGEK~Vt~LAGIGpvLGkrLeekGFDKAYvVl~f 75 (132)
|..-||++|+|||+.++++|++.|......+.-.
T Consensus 279 L~~lpv~~l~GiG~~~~~~L~~lGI~T~gdL~~~ 312 (459)
T 1t94_A 279 IKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQ 312 (459)
T ss_dssp HTTCBGGGCTTSCHHHHHHHHHTTCCBHHHHHHT
T ss_pred HHcCCHHhcCCcCHHHHHHHHHcCCCcHHHHHhh
Confidence 5566899999999999999999999998877654
No 17
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=82.25 E-value=0.48 Score=40.09 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=28.9
Q ss_pred CCCCCccccCCCchHHHHhHHhcCCCccceeee
Q psy6808 42 MGEKPVTELAGVGDVLGKRLESKGFDKSINPQM 74 (132)
Q Consensus 42 MGEK~Vt~LAGIGpvLGkrLeekGFDKAYvVl~ 74 (132)
|..-||++|+|||+...++|++.|...+..|.-
T Consensus 335 L~~LPV~kl~GIG~~t~~~L~~lGI~TigDL~~ 367 (517)
T 3pzp_A 335 IKDLPIRKVSGIGKVTEKMLKALGIITCTELYQ 367 (517)
T ss_dssp HTTCBGGGSTTCCHHHHHHHHHTTCCBHHHHHH
T ss_pred HhcCChhhhccccHHHHHHHHHhCCCcHHHHHh
Confidence 345689999999999999999999999888764
No 18
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=80.44 E-value=0.83 Score=37.36 Aligned_cols=38 Identities=18% Similarity=0.434 Sum_probs=32.1
Q ss_pred CCCccccCCCchHHHHh-HHhcCCCccceeeecCCCChh
Q psy6808 44 EKPVTELAGVGDVLGKR-LESKGFDKSINPQMFPDPDIE 81 (132)
Q Consensus 44 EK~Vt~LAGIGpvLGkr-LeekGFDKAYvVl~f~~~~~~ 81 (132)
.-||++|+|||+.++++ |+..|+..+.++.-.+...+.
T Consensus 252 ~lpv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~ 290 (435)
T 4ecq_A 252 QMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQ 290 (435)
T ss_dssp TCBGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHH
T ss_pred hCCHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHH
Confidence 45999999999999877 899999999999887655554
No 19
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=78.60 E-value=0.25 Score=35.66 Aligned_cols=56 Identities=25% Similarity=0.287 Sum_probs=34.5
Q ss_pred cccccHHHHhhhcCCCC--CCCccccCCCchHHHHhHHhcCCCccceeeecCCCChhheeeeccCCCCccccce
Q psy6808 27 KMSTSQKHQNFVSEPMG--EKPVTELAGVGDVLGKRLESKGFDKSINPQMFPDPDIEEKVLLFKNPNSLPIPIG 98 (132)
Q Consensus 27 MstTSqKHRnFVsEPMG--EK~Vt~LAGIGpvLGkrLeekGFDKAYvVl~f~~~~~~~~~~~~~~~~~~~~~~~ 98 (132)
|+.--.|-++||+|-+. +||--++.||-.. ..+.+.+ +++ --|.-+|||+.||||.
T Consensus 1 ~~~~~~~~~~f~~~k~~~~~~P~v~v~~v~~~------~~~~~~~---------~~~-~~l~V~NPN~~~lpi~ 58 (151)
T 1xo8_A 1 MASLLDKAKDFVADKLTAIPKPEGSVTDVDLK------DVNRDSV---------EYL-AKVSVTNPYSHSIPIC 58 (151)
T ss_dssp CTTSCSCCCTTCSSSCCCCCSCCCBCSEEEEC------CCTTTEE---------CEE-EEEEEECSSSSCCCCE
T ss_pred ChhHHHHHHHHHHHhhcCCCCCEEEEEEeEEe------ccCccee---------EEE-EEEEEECCCCCCcccc
Confidence 44445578899999998 6666666665432 1111111 122 2345689999999984
No 20
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=77.05 E-value=1.3 Score=30.58 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=23.4
Q ss_pred CccccCCCchHHHHhHHhcCCCcccee
Q psy6808 46 PVTELAGVGDVLGKRLESKGFDKSINP 72 (132)
Q Consensus 46 ~Vt~LAGIGpvLGkrLeekGFDKAYvV 72 (132)
..++||+||+.+.+.|.+.|+..+.++
T Consensus 5 ~L~dLPNig~~~e~~L~~~GI~t~~~L 31 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIKAGIKTPVEL 31 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHH
T ss_pred HHhhCCCCCHHHHHHHHHcCCCCHHHH
Confidence 468999999999999999999876554
No 21
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=75.48 E-value=1.5 Score=38.75 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=34.1
Q ss_pred CCCccccCCCchHHHHhHHhcCCCccceeeecCCCChhhe
Q psy6808 44 EKPVTELAGVGDVLGKRLESKGFDKSINPQMFPDPDIEEK 83 (132)
Q Consensus 44 EK~Vt~LAGIGpvLGkrLeekGFDKAYvVl~f~~~~~~~~ 83 (132)
+.+|+.|+|||+..+++|++.|......+++++--..+..
T Consensus 114 ~~~~~~l~gvg~~~~~~l~~lgi~~~~dll~~~P~~y~d~ 153 (780)
T 1gm5_A 114 STDIQYAKGVGPNRKKKLKKLGIETLRDLLEFFPRDYEDR 153 (780)
T ss_dssp CCCSSSSSSCCHHHHHHHHTTTCCSSGGGTSCCCSEEECC
T ss_pred cCCchhcCCCCHHHHHHHHHCCCCcHHHHHhhCCCceEeC
Confidence 3589999999999999999999999999988875555543
No 22
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=73.46 E-value=0.78 Score=31.10 Aligned_cols=20 Identities=35% Similarity=0.420 Sum_probs=16.7
Q ss_pred CCccccCCCchHHHHhHHhc
Q psy6808 45 KPVTELAGVGDVLGKRLESK 64 (132)
Q Consensus 45 K~Vt~LAGIGpvLGkrLeek 64 (132)
+.+..|+|||+.++++|.++
T Consensus 58 ~e~~~L~giG~ki~~~L~e~ 77 (87)
T 2kp7_A 58 KEAKILQHFGDRLCRMLDEK 77 (87)
T ss_dssp HHHHTCTTTCHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHHHHHH
Confidence 34567999999999999874
No 23
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=70.33 E-value=1.9 Score=29.87 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=21.7
Q ss_pred CCccccCCCchHHHHhHHhcC-CCccceee
Q psy6808 45 KPVTELAGVGDVLGKRLESKG-FDKSINPQ 73 (132)
Q Consensus 45 K~Vt~LAGIGpvLGkrLeekG-FDKAYvVl 73 (132)
.....|||||+.+|++..+.| |...-+|+
T Consensus 26 ~eL~~lpGIG~~~A~~IV~~GpF~s~edL~ 55 (97)
T 3arc_U 26 AAFIQYRGLYPTLAKLIVKNAPYESVEDVL 55 (97)
T ss_dssp GGGGGSTTCTTHHHHHHHHHCCCSSGGGGG
T ss_pred HHHhHCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 355789999999999998864 55555544
No 24
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=66.60 E-value=2.3 Score=36.06 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=24.8
Q ss_pred HHHhhhcC-CCCCCCccccCCCchHHHHhHHhc-CC
Q psy6808 33 KHQNFVSE-PMGEKPVTELAGVGDVLGKRLESK-GF 66 (132)
Q Consensus 33 KHRnFVsE-PMGEK~Vt~LAGIGpvLGkrLeek-GF 66 (132)
.-++|+.. | -+|++++|||+.++++|.+. |.
T Consensus 297 ~~~~fL~~~~---lPV~~l~GIG~~t~~~L~~llGI 329 (520)
T 3mfi_A 297 CLLDFLDCGK---FEITSFWTLGGVLGKELIDVLDL 329 (520)
T ss_dssp GHHHHHTSSS---CCGGGSTTCSSHHHHHHHHHTTC
T ss_pred HHHHHhhccC---CcHHHhcCCCHHHHHHHHHhcCC
Confidence 33455543 2 48999999999999999999 98
No 25
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=66.23 E-value=1.2 Score=34.46 Aligned_cols=36 Identities=22% Similarity=0.145 Sum_probs=0.0
Q ss_pred CccccC--CCchHHHHhHHhcCCCccceeeecCCCChh
Q psy6808 46 PVTELA--GVGDVLGKRLESKGFDKSINPQMFPDPDIE 81 (132)
Q Consensus 46 ~Vt~LA--GIGpvLGkrLeekGFDKAYvVl~f~~~~~~ 81 (132)
++..|+ ||++...++|+++||..+-.+++.+..++.
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~ 63 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALC 63 (343)
T ss_dssp --------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHH
Confidence 688898 999999999999999999999998766653
No 26
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=65.48 E-value=3 Score=25.96 Aligned_cols=18 Identities=33% Similarity=0.674 Sum_probs=15.6
Q ss_pred ccccCCCchHHHHhHHhc
Q psy6808 47 VTELAGVGDVLGKRLESK 64 (132)
Q Consensus 47 Vt~LAGIGpvLGkrLeek 64 (132)
...+||||+..++++.+.
T Consensus 29 L~~ipGIG~~~A~~Il~~ 46 (75)
T 2duy_A 29 LMALPGIGPVLARRIVEG 46 (75)
T ss_dssp HTTSTTCCHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHH
Confidence 467899999999999885
No 27
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=63.15 E-value=4.3 Score=27.40 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=28.9
Q ss_pred CCCCCccccCCCchHHHHhHHhcCCCccceee
Q psy6808 42 MGEKPVTELAGVGDVLGKRLESKGFDKSINPQ 73 (132)
Q Consensus 42 MGEK~Vt~LAGIGpvLGkrLeekGFDKAYvVl 73 (132)
||.+.+...||+-+.+.++|+.+|...+..++
T Consensus 1 m~~l~~~~~p~Lse~~~~~L~~~~I~Tv~Dfl 32 (83)
T 2kz3_A 1 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLV 32 (83)
T ss_dssp CCCCCTTSSTTCCHHHHHHHHHTTCCCHHHHT
T ss_pred CCccccccCCCCCHHHHHHHHHCCCCCHHHHH
Confidence 89999999999999999999999998877654
No 28
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=59.55 E-value=4.5 Score=30.16 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=22.0
Q ss_pred ccccCCCchHHHHhHHhcC-CCccceeee
Q psy6808 47 VTELAGVGDVLGKRLESKG-FDKSINPQM 74 (132)
Q Consensus 47 Vt~LAGIGpvLGkrLeekG-FDKAYvVl~ 74 (132)
.+.||||||..|++..+.| |...-.++-
T Consensus 65 L~~LpGiGp~~A~~II~~GpF~svedL~~ 93 (134)
T 1s5l_U 65 FIQYRGLYPTLAKLIVKNAPYESVEDVLN 93 (134)
T ss_dssp GGGSTTCTHHHHHHHHHTCCCSSGGGGGG
T ss_pred HHHCCCCCHHHHHHHHHcCCCCCHHHHHh
Confidence 5679999999999999774 766666553
No 29
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=58.30 E-value=2.1 Score=33.54 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=0.0
Q ss_pred CccccCCCchHHHHhHHhcCCCccceee
Q psy6808 46 PVTELAGVGDVLGKRLESKGFDKSINPQ 73 (132)
Q Consensus 46 ~Vt~LAGIGpvLGkrLeekGFDKAYvVl 73 (132)
....++|||+..+.+|-+.||.-.-.+.
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~gf~sve~L~ 43 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREAGFESVEDVR 43 (241)
T ss_dssp ----------------------------
T ss_pred HHhcCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 4568999999999999888997765553
No 30
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=57.26 E-value=4.3 Score=24.34 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=16.6
Q ss_pred ccccCCCchHHHHhHHhcCCC
Q psy6808 47 VTELAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 47 Vt~LAGIGpvLGkrLeekGFD 67 (132)
.+.++|||+..+++|.+. |.
T Consensus 16 L~~i~giG~~~a~~Ll~~-fg 35 (75)
T 1x2i_A 16 VEGLPHVSATLARRLLKH-FG 35 (75)
T ss_dssp HTTSTTCCHHHHHHHHHH-HC
T ss_pred HcCCCCCCHHHHHHHHHH-cC
Confidence 467999999999999974 43
No 31
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=55.36 E-value=3.9 Score=25.58 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=17.5
Q ss_pred CccccCCCchHHHHhHHhcCCC
Q psy6808 46 PVTELAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 46 ~Vt~LAGIGpvLGkrLeekGFD 67 (132)
....++|||++.+++|.+. |.
T Consensus 25 ~L~~I~gIG~~~A~~Ll~~-fg 45 (78)
T 1kft_A 25 SLETIEGVGPKRRQMLLKY-MG 45 (78)
T ss_dssp GGGGCTTCSSSHHHHHHHH-HS
T ss_pred HHhcCCCCCHHHHHHHHHH-cC
Confidence 3568999999999999986 54
No 32
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=51.78 E-value=3.9 Score=30.47 Aligned_cols=52 Identities=21% Similarity=0.368 Sum_probs=41.3
Q ss_pred CccccCCCchHHHHh-HHhcCCCccceeeecCCCChhheeeeccCCCCccccc
Q psy6808 46 PVTELAGVGDVLGKR-LESKGFDKSINPQMFPDPDIEEKVLLFKNPNSLPIPI 97 (132)
Q Consensus 46 ~Vt~LAGIGpvLGkr-LeekGFDKAYvVl~f~~~~~~~~~~~~~~~~~~~~~~ 97 (132)
..|.+-|||...+.. ++..|+|..--+--..|.+|+.-.-...||....||-
T Consensus 31 ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~iP~ 83 (146)
T 3u5c_S 31 ALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPA 83 (146)
T ss_dssp TGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTTCCS
T ss_pred hHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccCccH
Confidence 457888999999988 6778999888887777777776666678887777773
No 33
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=50.70 E-value=3.6 Score=31.89 Aligned_cols=31 Identities=3% Similarity=0.182 Sum_probs=25.2
Q ss_pred CCCccccCCCchHHHHhHHhcCCCccceeee
Q psy6808 44 EKPVTELAGVGDVLGKRLESKGFDKSINPQM 74 (132)
Q Consensus 44 EK~Vt~LAGIGpvLGkrLeekGFDKAYvVl~ 74 (132)
+-+...|||||++.+++|+++|+..-+.+.-
T Consensus 156 ~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~ 186 (328)
T 3im1_A 156 DNPLRQIPHFNNKILEKCKEINVETVYDIMA 186 (328)
T ss_dssp SCGGGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred CCceeCCCCCCHHHHHHHHhCCCCCHHHHhc
Confidence 4578899999999999999999866555433
No 34
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=49.56 E-value=4.4 Score=32.93 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=31.6
Q ss_pred CCCCccccCC--CchHHHHhHHhcCCCccceeeecCCCCh
Q psy6808 43 GEKPVTELAG--VGDVLGKRLESKGFDKSINPQMFPDPDI 80 (132)
Q Consensus 43 GEK~Vt~LAG--IGpvLGkrLeekGFDKAYvVl~f~~~~~ 80 (132)
+..++.+|.+ |++...++|.++||..+-.+++..-.++
T Consensus 79 ~~~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L 118 (400)
T 3lda_A 79 SFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDL 118 (400)
T ss_dssp CSCBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHSCHHHH
T ss_pred CccCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHH
Confidence 4557888876 8899999999999999999988875444
No 35
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=48.17 E-value=4.8 Score=26.25 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=23.2
Q ss_pred ccCCCchHHHHhHHhcCCCccceeeecC
Q psy6808 49 ELAGVGDVLGKRLESKGFDKSINPQMFP 76 (132)
Q Consensus 49 ~LAGIGpvLGkrLeekGFDKAYvVl~f~ 76 (132)
+..||++..+.+|.+.||...-.|.|-+
T Consensus 10 ~~lgI~e~~a~~L~~~Gf~tve~vA~~~ 37 (70)
T 1u9l_A 10 KYLDIDEDFATVLVEEGFSTLEELAYVP 37 (70)
T ss_dssp HHHTCCHHHHHHHHHTTCCCHHHHHHSC
T ss_pred HhCCCCHHHHHHHHHcCcCcHHHHHcCC
Confidence 4569999999999999998876666654
No 36
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=47.75 E-value=9.1 Score=30.59 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=31.7
Q ss_pred cHHHHhhhcCC--CCCCCccccCCCchHHHHhHHhcCCCccceeee
Q psy6808 31 SQKHQNFVSEP--MGEKPVTELAGVGDVLGKRLESKGFDKSINPQM 74 (132)
Q Consensus 31 SqKHRnFVsEP--MGEK~Vt~LAGIGpvLGkrLeekGFDKAYvVl~ 74 (132)
.+++...-+++ -+-+....++|||+..+++|-++|+.---.|.-
T Consensus 82 ~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~Gi~tledL~~ 127 (335)
T 2fmp_A 82 LRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRK 127 (335)
T ss_dssp CHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHT
T ss_pred cHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHH
Confidence 34444444433 455667899999999999999999987665554
No 37
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=46.77 E-value=8.7 Score=24.43 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=16.7
Q ss_pred ccccCCCchHHHHhHHhcCCCc
Q psy6808 47 VTELAGVGDVLGKRLESKGFDK 68 (132)
Q Consensus 47 Vt~LAGIGpvLGkrLeekGFDK 68 (132)
...++|||++.+++|.+. |..
T Consensus 21 L~~IpgIG~~~A~~Ll~~-fgs 41 (89)
T 1z00_A 21 LTTVKSVNKTDSQTLLTT-FGS 41 (89)
T ss_dssp HTTSSSCCHHHHHHHHHH-TCB
T ss_pred HHcCCCCCHHHHHHHHHH-CCC
Confidence 356899999999999875 543
No 38
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=46.64 E-value=4.4 Score=26.64 Aligned_cols=19 Identities=5% Similarity=0.109 Sum_probs=10.2
Q ss_pred ccccCCCchHHHHhHHhcC
Q psy6808 47 VTELAGVGDVLGKRLESKG 65 (132)
Q Consensus 47 Vt~LAGIGpvLGkrLeekG 65 (132)
...++|||+..+++|.+.|
T Consensus 72 L~~v~Gig~k~~~~l~~~g 90 (98)
T 2edu_A 72 LERVEGITGKQMESFLKAN 90 (98)
T ss_dssp GGGSTTCCHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHCc
Confidence 3445555555555555554
No 39
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=46.35 E-value=9.1 Score=30.66 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.3
Q ss_pred cccCCCchHHHHhHHhcCCCcccee
Q psy6808 48 TELAGVGDVLGKRLESKGFDKSINP 72 (132)
Q Consensus 48 t~LAGIGpvLGkrLeekGFDKAYvV 72 (132)
+.++|||+..+++|-++|+.---.|
T Consensus 99 ~~v~GiG~k~a~~l~~~Gi~tledL 123 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWYQQGFRSLEDI 123 (335)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHHHH
T ss_pred hcCCCcCHHHHHHHHHcCCCCHHHH
Confidence 5899999999999999999765444
No 40
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=44.98 E-value=9.6 Score=24.49 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=15.3
Q ss_pred ccccCCCchHHHHhHHhc
Q psy6808 47 VTELAGVGDVLGKRLESK 64 (132)
Q Consensus 47 Vt~LAGIGpvLGkrLeek 64 (132)
...++|||++.+++|.+.
T Consensus 34 L~~IpgIG~~~A~~Ll~~ 51 (91)
T 2a1j_B 34 LTTVKSVNKTDSQTLLTT 51 (91)
T ss_dssp HTTSTTCCHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHH
Confidence 356899999999999875
No 41
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=44.12 E-value=4.7 Score=30.20 Aligned_cols=50 Identities=16% Similarity=0.381 Sum_probs=40.4
Q ss_pred ccccCCCchHHHHh-HHhcCCCccceeeecCCCChhheeeeccCCCCcccc
Q psy6808 47 VTELAGVGDVLGKR-LESKGFDKSINPQMFPDPDIEEKVLLFKNPNSLPIP 96 (132)
Q Consensus 47 Vt~LAGIGpvLGkr-LeekGFDKAYvVl~f~~~~~~~~~~~~~~~~~~~~~ 96 (132)
.+.+-|||...+.. ++..|+|..--+--..|.+|+.-.-...||....||
T Consensus 30 Lt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ip 80 (152)
T 3iz6_M 30 LTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVP 80 (152)
T ss_dssp HTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCCC
T ss_pred hhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCcc
Confidence 37788999999998 677899887777777777777666677899888777
No 42
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=41.10 E-value=9.3 Score=30.61 Aligned_cols=18 Identities=11% Similarity=0.429 Sum_probs=15.8
Q ss_pred ccccCCCchHHHHhHHhc
Q psy6808 47 VTELAGVGDVLGKRLESK 64 (132)
Q Consensus 47 Vt~LAGIGpvLGkrLeek 64 (132)
+..|||||+.++++..|-
T Consensus 59 l~~lpGIG~~~A~kI~E~ 76 (335)
T 2bcq_A 59 ACSIPGIGKRMAEKIIEI 76 (335)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HhcCCCccHHHHHHHHHH
Confidence 789999999999988764
No 43
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=40.32 E-value=13 Score=30.09 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=25.6
Q ss_pred CCCCccccCCCchHHHHhHHhcCCCccceee
Q psy6808 43 GEKPVTELAGVGDVLGKRLESKGFDKSINPQ 73 (132)
Q Consensus 43 GEK~Vt~LAGIGpvLGkrLeekGFDKAYvVl 73 (132)
|-+....++|||+.-+++|-++|+.---.|.
T Consensus 100 ~l~~l~~I~GvG~kta~~l~~~Gi~tledL~ 130 (360)
T 2ihm_A 100 TMKLFTQVFGVGVKTANRWYQEGLRTLDELR 130 (360)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 3345578999999999999999998776665
No 44
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=39.46 E-value=12 Score=30.17 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=16.2
Q ss_pred CccccCCCchHHHHhHHhc
Q psy6808 46 PVTELAGVGDVLGKRLESK 64 (132)
Q Consensus 46 ~Vt~LAGIGpvLGkrLeek 64 (132)
.++.|||||+.++.+.+|-
T Consensus 62 ~l~~lpGIG~~~A~kI~E~ 80 (360)
T 2ihm_A 62 QLHGLPYFGEHSTRVIQEL 80 (360)
T ss_dssp GGTTCTTCCHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHH
Confidence 4899999999999987763
No 45
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=39.40 E-value=9.8 Score=26.97 Aligned_cols=17 Identities=12% Similarity=0.177 Sum_probs=15.2
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
.|||..++++|.++|++
T Consensus 19 ~GIG~~ia~~l~~~G~~ 35 (266)
T 3oig_A 19 RSIAWGIARSLHEAGAR 35 (266)
T ss_dssp TSHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHCCCE
Confidence 46999999999999974
No 46
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=38.90 E-value=7.1 Score=30.45 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=23.5
Q ss_pred CCCccccCCCchHHHHhHHhcCCCcccee
Q psy6808 44 EKPVTELAGVGDVLGKRLESKGFDKSINP 72 (132)
Q Consensus 44 EK~Vt~LAGIGpvLGkrLeekGFDKAYvV 72 (132)
+-+...|||||+..+++|+++|+..-..+
T Consensus 160 ~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l 188 (339)
T 2q0z_X 160 DSYLKQLPHFTSEHIKRCTDKGVESVFDI 188 (339)
T ss_dssp SCGGGGSTTCCHHHHHHHHHTTCCSHHHH
T ss_pred CCceecCCCCCHHHHHHHHhcCCCCHHHH
Confidence 45788999999999999999997544433
No 47
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=38.57 E-value=13 Score=30.42 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=16.3
Q ss_pred CccccCCCchHHHHhHHhc
Q psy6808 46 PVTELAGVGDVLGKRLESK 64 (132)
Q Consensus 46 ~Vt~LAGIGpvLGkrLeek 64 (132)
.+..|||||+.++++.+|-
T Consensus 81 ~l~~lpGIG~~ia~kI~E~ 99 (381)
T 1jms_A 81 DTEGIPCLGDKVKSIIEGI 99 (381)
T ss_dssp GGTTCSSCCHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHH
Confidence 4899999999999987763
No 48
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=38.46 E-value=11 Score=30.15 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=15.7
Q ss_pred ccccCCCchHHHHhHHhc
Q psy6808 47 VTELAGVGDVLGKRLESK 64 (132)
Q Consensus 47 Vt~LAGIGpvLGkrLeek 64 (132)
++.|||||+.++.+.+|-
T Consensus 59 l~~LpGIG~~~A~kI~E~ 76 (335)
T 2fmp_A 59 AKKLPGVGTKIAEKIDEF 76 (335)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHH
Confidence 789999999999887764
No 49
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=35.45 E-value=11 Score=31.25 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=23.4
Q ss_pred CccccCCCchHHHHhHHhcCCCccceee
Q psy6808 46 PVTELAGVGDVLGKRLESKGFDKSINPQ 73 (132)
Q Consensus 46 ~Vt~LAGIGpvLGkrLeekGFDKAYvVl 73 (132)
+...+||||+.-+++|.++||..-..+.
T Consensus 658 ~L~qlp~i~~~rar~L~~~g~~s~~~l~ 685 (715)
T 2va8_A 658 ELVQISGVGRKRARLLYNNGIKELGDVV 685 (715)
T ss_dssp HHHTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred chhhCCCCCHHHHHHHHHcCCCCHHHHh
Confidence 3468999999999999999997666654
No 50
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=35.27 E-value=14 Score=29.21 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=21.9
Q ss_pred cccccHHHHhhhcCCCCCCCccccCCCchHHHHhHH
Q psy6808 27 KMSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLE 62 (132)
Q Consensus 27 MstTSqKHRnFVsEPMGEK~Vt~LAGIGpvLGkrLe 62 (132)
|+-.++...+.|. ....|||||+.-|.||+
T Consensus 14 ~~~~~~~l~~LI~------~l~~LPGIG~KsA~RlA 43 (212)
T 3vdp_A 14 MSYYSTSVAKLIE------ELSKLPGIGPKTAQRLA 43 (212)
T ss_dssp --CCCHHHHHHHH------HHHTSTTCCHHHHHHHH
T ss_pred hhhhHHHHHHHHH------HHHHCCCCCHHHHHHHH
Confidence 6667766666664 35889999999999983
No 51
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=35.19 E-value=11 Score=28.14 Aligned_cols=57 Identities=26% Similarity=0.275 Sum_probs=35.5
Q ss_pred ccccccHHHHhhhcCCCC--CCCccccCCCchHHHHhHHhcCCCccceeeecCCCChhheeeeccCCCCccccce
Q psy6808 26 AKMSTSQKHQNFVSEPMG--EKPVTELAGVGDVLGKRLESKGFDKSINPQMFPDPDIEEKVLLFKNPNSLPIPIG 98 (132)
Q Consensus 26 ~MstTSqKHRnFVsEPMG--EK~Vt~LAGIGpvLGkrLeekGFDKAYvVl~f~~~~~~~~~~~~~~~~~~~~~~~ 98 (132)
.|+.--.|-++||+|-|. ++|--++.+|-.. ..+...+ ++. --|.-+|||+.||||.
T Consensus 23 ~~~~~~~~~k~f~~~ki~~~~~PeV~v~~v~~~------~~~l~~~---------~~~-l~LrV~NPN~~pLpi~ 81 (174)
T 1yyc_A 23 VISSLLDKAKGFFAEKLANIPTPEATVDDVDFK------GVTRDGV---------DYH-AKVSVKNPYSQSIPIC 81 (174)
T ss_dssp HHHHHHHHHHHHHHHTTTTSCCCEEEEEEEEEE------EECSSSE---------EEE-EEEEEEECSSSCCBCC
T ss_pred hhhHHHHHhhhhHHHhhcCCCCCEEEEEEeEEe------ccccceE---------EEE-EEEEEECCCCCCcccc
Confidence 366666799999999887 6666666655332 1111111 111 2245689999999984
No 52
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=34.58 E-value=15 Score=22.74 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=14.4
Q ss_pred ccccCCCchHHHHhHHhc
Q psy6808 47 VTELAGVGDVLGKRLESK 64 (132)
Q Consensus 47 Vt~LAGIGpvLGkrLeek 64 (132)
...+||||+.-.++|-.+
T Consensus 6 L~~IpGIG~kr~~~LL~~ 23 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMHH 23 (63)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHH
Confidence 367999999998888653
No 53
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=34.29 E-value=14 Score=26.90 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=18.9
Q ss_pred CCchHHHHhHHhcCCCccceeeecCCC
Q psy6808 52 GVGDVLGKRLESKGFDKSINPQMFPDP 78 (132)
Q Consensus 52 GIGpvLGkrLeekGFDKAYvVl~f~~~ 78 (132)
|||..++++|.++|. .+++..-+.
T Consensus 19 GIG~aiA~~la~~Ga---~Vvi~~r~~ 42 (256)
T 4fs3_A 19 SIAFGVAKVLDQLGA---KLVFTYRKE 42 (256)
T ss_dssp CHHHHHHHHHHHTTC---EEEEEESSG
T ss_pred hHHHHHHHHHHHCCC---EEEEEECCH
Confidence 899999999999995 455555544
No 54
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=32.97 E-value=20 Score=29.37 Aligned_cols=31 Identities=26% Similarity=0.194 Sum_probs=24.6
Q ss_pred CCCCccccCCCchHHHHhHHhcCCCccceee
Q psy6808 43 GEKPVTELAGVGDVLGKRLESKGFDKSINPQ 73 (132)
Q Consensus 43 GEK~Vt~LAGIGpvLGkrLeekGFDKAYvVl 73 (132)
|-+....++|||+.-+++|-++|+.---.|.
T Consensus 119 ~l~~l~~I~GvGpk~a~~ly~~Gi~tledL~ 149 (381)
T 1jms_A 119 SFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQ 149 (381)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHccCCCCHHHHHHHHHcCCCcHHHHH
Confidence 3345568999999999999999997665554
No 55
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=31.62 E-value=17 Score=30.18 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=25.2
Q ss_pred CCccccCCCchHHHHhHHhcCCCccceee
Q psy6808 45 KPVTELAGVGDVLGKRLESKGFDKSINPQ 73 (132)
Q Consensus 45 K~Vt~LAGIGpvLGkrLeekGFDKAYvVl 73 (132)
=+...|||||+..+++|.++||..-+.+.
T Consensus 646 ~~L~qlp~v~~~rar~L~~~G~~s~~dl~ 674 (720)
T 2zj8_A 646 IPLMQLPLVGRRRARALYNSGFRSIEDIS 674 (720)
T ss_dssp GGGTTSTTCCHHHHHHHHTTTCCSHHHHH
T ss_pred hhhhhCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 35678999999999999999998877765
No 56
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=30.88 E-value=12 Score=25.12 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=32.4
Q ss_pred HHHhHHhcCCC--ccceeeecCCCChhheeeeccCCC-CccccceeEE
Q psy6808 57 LGKRLESKGFD--KSINPQMFPDPDIEEKVLLFKNPN-SLPIPIGVEV 101 (132)
Q Consensus 57 LGkrLeekGFD--KAYvVl~f~~~~~~~~~~~~~~~~-~~~~~~~~~~ 101 (132)
+++.|+++|.+ +-|.++.|-+|.+-.+++. .||. ++-.|.-|-|
T Consensus 39 ~~~~~~~~G~~~~~~~~il~~cnp~~a~~~l~-~~p~~g~~lPcrv~v 85 (130)
T 1q9u_A 39 VTEKLQEKGLDFSTPMVILEVCNPQEAARVLN-ENLLVGYFLPCKLVV 85 (130)
T ss_dssp HHHHHHHTTCCCCSCEEEEEEECHHHHHHHHH-HCGGGGGGCSEEEEE
T ss_pred HHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHH-hCHHHHhhcCeEEEE
Confidence 56778888987 6899999999999888654 4554 5556654433
No 57
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=30.73 E-value=58 Score=29.05 Aligned_cols=58 Identities=19% Similarity=0.364 Sum_probs=39.2
Q ss_pred CCcc--ccccee----eeeecCCcccccccccccHHHHhhhcCCCCCCCccccCCCchHHHHhHHhcCCCcc
Q psy6808 4 SPTH--WCNSTV----HFWPFTSPTQELAKMSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDKS 69 (132)
Q Consensus 4 ~~~~--~~~~~~----~f~~~~~~~~~~~MstTSqKHRnFVsEPMGEK~Vt~LAGIGpvLGkrLeekGFDKA 69 (132)
-|+| .|+|.+ ..+.-+.+. -....-.+..-|+|. ..-.++|+|+....+|-++|+-+.
T Consensus 402 ~P~~CP~Cgs~l~~g~~~~~C~n~~---Cpaq~~~~l~hf~sr-----~aldI~GLG~k~i~~L~~~g~I~~ 465 (667)
T 1dgs_A 402 WPEACPECGHRLVKEGKVHRCPNPL---CPAKRFEAIRHYASR-----KAMDIEGLGEKLIERLLEKGLVRD 465 (667)
T ss_dssp CCSBCTTTCCBCEEETTEEECCCTT---CGGGHHHHHHHHHST-----TSSCCTTCCHHHHHHHHHTTSCSS
T ss_pred CCCCCCCCCCCccCCCeEEEeCCCC---ChhHHHHHHHHHhcc-----cccCcCcCCHHHHHHHHHcCCCCC
Confidence 4777 788877 333322222 233455677778874 446789999999999999997443
No 58
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=30.24 E-value=23 Score=28.04 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=14.4
Q ss_pred CccccCCCchHHHHhHHh
Q psy6808 46 PVTELAGVGDVLGKRLES 63 (132)
Q Consensus 46 ~Vt~LAGIGpvLGkrLee 63 (132)
....|||||+.+|.+..+
T Consensus 133 eL~~LpGIG~k~A~~IIe 150 (205)
T 2i5h_A 133 QLELLPGVGKKMMWAIIE 150 (205)
T ss_dssp GGGGSTTCCHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHH
Confidence 456899999999988644
No 59
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=30.01 E-value=14 Score=25.68 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=18.6
Q ss_pred CCCchHHHHhHHhcCCCccceeeecCCC
Q psy6808 51 AGVGDVLGKRLESKGFDKSINPQMFPDP 78 (132)
Q Consensus 51 AGIGpvLGkrLeekGFDKAYvVl~f~~~ 78 (132)
-|||..++++|.++|+. +++.--++
T Consensus 11 ~gIG~~~a~~l~~~G~~---V~~~~r~~ 35 (230)
T 3guy_A 11 SGLGAELAKLYDAEGKA---TYLTGRSE 35 (230)
T ss_dssp SHHHHHHHHHHHHTTCC---EEEEESCH
T ss_pred chHHHHHHHHHHHCCCE---EEEEeCCH
Confidence 58999999999999963 44443333
No 60
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Probab=29.95 E-value=20 Score=25.59 Aligned_cols=17 Identities=29% Similarity=0.696 Sum_probs=15.3
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 10 ~gIG~aia~~l~~~G~~ 26 (248)
T 3asu_A 10 AGFGECITRRFIQQGHK 26 (248)
T ss_dssp STTHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 59999999999999963
No 61
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=29.81 E-value=19 Score=28.77 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=13.9
Q ss_pred ccccCCCchHHHHhHH
Q psy6808 47 VTELAGVGDVLGKRLE 62 (132)
Q Consensus 47 Vt~LAGIGpvLGkrLe 62 (132)
...|||||+.-|.||+
T Consensus 14 l~~LPGIG~KSA~RlA 29 (228)
T 1vdd_A 14 LSRLPGIGPKSAQRLA 29 (228)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HhHCCCCCHHHHHHHH
Confidence 4689999999999983
No 62
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=29.54 E-value=26 Score=29.63 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=23.4
Q ss_pred CCCccccCCCchHHHHhHHhcCCCccceee
Q psy6808 44 EKPVTELAGVGDVLGKRLESKGFDKSINPQ 73 (132)
Q Consensus 44 EK~Vt~LAGIGpvLGkrLeekGFDKAYvVl 73 (132)
-.....|+|||+..+.+|-+.||...-.+.
T Consensus 96 ~~~L~~v~GVGpk~A~~i~~~G~~s~edL~ 125 (578)
T 2w9m_A 96 LLDLLGVRGLGPKKIRSLWLAGIDSLERLR 125 (578)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHcCCCCHHHHH
Confidence 344578999999999999888987655443
No 63
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=29.34 E-value=5.3 Score=30.02 Aligned_cols=51 Identities=16% Similarity=0.321 Sum_probs=39.7
Q ss_pred ccccCCCchHHHHhH-HhcCCCccceeeecCCCChhheeeeccCCCCccccc
Q psy6808 47 VTELAGVGDVLGKRL-ESKGFDKSINPQMFPDPDIEEKVLLFKNPNSLPIPI 97 (132)
Q Consensus 47 Vt~LAGIGpvLGkrL-eekGFDKAYvVl~f~~~~~~~~~~~~~~~~~~~~~~ 97 (132)
.+.+-|||...+..+ +..|+|..-.+--..|.+|+.-.-...||-...||.
T Consensus 32 Lt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~p~~~~iP~ 83 (155)
T 2xzm_M 32 LTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIADPEAHGIPT 83 (155)
T ss_dssp HTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHSHHHHCCCG
T ss_pred eecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhCccccCCCH
Confidence 367899999999886 778998877777777777776555667888888874
No 64
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=29.16 E-value=28 Score=25.05 Aligned_cols=32 Identities=9% Similarity=-0.063 Sum_probs=27.1
Q ss_pred CCCchHHHHhHHhcCCCccceeeecCCCChhh
Q psy6808 51 AGVGDVLGKRLESKGFDKSINPQMFPDPDIEE 82 (132)
Q Consensus 51 AGIGpvLGkrLeekGFDKAYvVl~f~~~~~~~ 82 (132)
.|.-.-+|..|.++|..|-..||-|-.|...+
T Consensus 74 d~TE~gIa~eLv~~GVpk~dIVLgF~~P~~R~ 105 (112)
T 2nlv_A 74 NLTDRNPAEELVMMGVPREDIVLGLQAPYKRQ 105 (112)
T ss_dssp ECSSSCHHHHHHHTTCCGGGEEETTSCGGGGG
T ss_pred CCccccHHHHHHHcCCCHHHEEEccCCccccc
Confidence 45556688999999999999999999998754
No 65
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=28.56 E-value=18 Score=32.96 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=18.8
Q ss_pred CCCCccccCCCchHHHHhHHhc
Q psy6808 43 GEKPVTELAGVGDVLGKRLESK 64 (132)
Q Consensus 43 GEK~Vt~LAGIGpvLGkrLeek 64 (132)
++.-|+++|||||+.|++|-++
T Consensus 466 qeamLtAIaGIGp~tAeRLLEk 487 (685)
T 4gfj_A 466 GYASLISIRGIDRERAERLLKK 487 (685)
T ss_dssp THHHHHTSTTCCHHHHHHHHHH
T ss_pred ceeeeeccCCCCHHHHHHHHHH
Confidence 3567899999999999998765
No 66
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=28.41 E-value=8.4 Score=35.23 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=12.7
Q ss_pred ccccHHHHhhhcCCCCCC-CccccC
Q psy6808 28 MSTSQKHQNFVSEPMGEK-PVTELA 51 (132)
Q Consensus 28 stTSqKHRnFVsEPMGEK-~Vt~LA 51 (132)
-.|.+||..|++ |-|+- .+.+..
T Consensus 96 g~TAeKhdsF~~-~~~~g~~i~~Fs 119 (729)
T 3o6x_A 96 DGTAEKHDGFIE-FGEDGEVIERFS 119 (729)
T ss_dssp -----CCEECEE-ECTTSSEEECCC
T ss_pred CCchhhhhhhcc-cCCCCCeeeEEc
Confidence 356789999998 77664 444444
No 67
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=28.39 E-value=21 Score=25.60 Aligned_cols=26 Identities=4% Similarity=0.034 Sum_probs=19.6
Q ss_pred CCCchHHHHhHHhcCCCccceeeecCCCC
Q psy6808 51 AGVGDVLGKRLESKGFDKSINPQMFPDPD 79 (132)
Q Consensus 51 AGIGpvLGkrLeekGFDKAYvVl~f~~~~ 79 (132)
-|||..++++|.++|.+ +++.--+++
T Consensus 18 ~gIG~~~a~~l~~~G~~---V~~~~r~~~ 43 (275)
T 2pd4_A 18 KSIAYGIAQSCFNQGAT---LAFTYLNES 43 (275)
T ss_dssp TSHHHHHHHHHHTTTCE---EEEEESSTT
T ss_pred CcHHHHHHHHHHHCCCE---EEEEeCCHH
Confidence 49999999999999963 555544544
No 68
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=28.29 E-value=19 Score=26.09 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=18.8
Q ss_pred CCCchHHHHhHHhcCCCccceeeecCCC
Q psy6808 51 AGVGDVLGKRLESKGFDKSINPQMFPDP 78 (132)
Q Consensus 51 AGIGpvLGkrLeekGFDKAYvVl~f~~~ 78 (132)
.|||..++++|.++|+. +++.--++
T Consensus 38 ~GIG~~ia~~l~~~G~~---V~~~~r~~ 62 (280)
T 3nrc_A 38 KSIAYGIAKAMHREGAE---LAFTYVGQ 62 (280)
T ss_dssp TCHHHHHHHHHHHTTCE---EEEEECTT
T ss_pred CCHHHHHHHHHHHcCCE---EEEeeCch
Confidence 46999999999999963 44444444
No 69
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}
Probab=28.26 E-value=23 Score=25.00 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=15.0
Q ss_pred CCCchHHHHhHHhcCC
Q psy6808 51 AGVGDVLGKRLESKGF 66 (132)
Q Consensus 51 AGIGpvLGkrLeekGF 66 (132)
-|||..++++|.++|+
T Consensus 11 ~gIG~~ia~~l~~~G~ 26 (244)
T 1zmo_A 11 HFAGPAAVEALTQDGY 26 (244)
T ss_dssp STTHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHCCC
Confidence 5999999999999996
No 70
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=28.22 E-value=18 Score=25.54 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=16.8
Q ss_pred cccc--CCCchHHHHhHHhcCCC
Q psy6808 47 VTEL--AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 47 Vt~L--AGIGpvLGkrLeekGFD 67 (132)
||-- .|||..++++|.++|++
T Consensus 27 ITGasg~GIG~~~a~~l~~~G~~ 49 (266)
T 3o38_A 27 VTAAAGTGIGSTTARRALLEGAD 49 (266)
T ss_dssp ESSCSSSSHHHHHHHHHHHTTCE
T ss_pred EECCCCCchHHHHHHHHHHCCCE
Confidence 3444 38999999999999964
No 71
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=28.21 E-value=29 Score=25.05 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=27.1
Q ss_pred CCCchHHHHhHHhcCCCccceeeecCCCChhh
Q psy6808 51 AGVGDVLGKRLESKGFDKSINPQMFPDPDIEE 82 (132)
Q Consensus 51 AGIGpvLGkrLeekGFDKAYvVl~f~~~~~~~ 82 (132)
.|.-.-+|..|.++|..|-..||-|-.|...+
T Consensus 76 d~TE~gIa~eLv~~GVpk~dIVLgF~~P~~R~ 107 (114)
T 2nwv_A 76 DYTEEGIATELMRLGVTNNDIVLAFHPPDVRK 107 (114)
T ss_dssp ECCSSCHHHHHHHTTCCGGGEEETTSCGGGGG
T ss_pred CCccccHHHHHHHcCCCHHHEEEccCCccccc
Confidence 45556688999999999999999999998754
No 72
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=28.08 E-value=23 Score=25.14 Aligned_cols=17 Identities=24% Similarity=0.051 Sum_probs=15.4
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 11 ~gIG~~ia~~l~~~G~~ 27 (254)
T 1zmt_A 11 HFGGMGSALRLSEAGHT 27 (254)
T ss_dssp STTHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 59999999999999963
No 73
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Probab=28.08 E-value=18 Score=25.75 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=18.8
Q ss_pred CCCchHHHHhHHhcCCCccceeeecCCC
Q psy6808 51 AGVGDVLGKRLESKGFDKSINPQMFPDP 78 (132)
Q Consensus 51 AGIGpvLGkrLeekGFDKAYvVl~f~~~ 78 (132)
-|||..++++|.++|++ +++.--++
T Consensus 20 ~gIG~~ia~~l~~~G~~---V~~~~r~~ 44 (261)
T 2wyu_A 20 RSLGFAIAAKLKEAGAE---VALSYQAE 44 (261)
T ss_dssp SSHHHHHHHHHHHHTCE---EEEEESCG
T ss_pred CcHHHHHHHHHHHCCCE---EEEEcCCH
Confidence 49999999999999964 44444444
No 74
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=27.64 E-value=23 Score=23.55 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=14.4
Q ss_pred ccccCCCchHHHHhHHhc
Q psy6808 47 VTELAGVGDVLGKRLESK 64 (132)
Q Consensus 47 Vt~LAGIGpvLGkrLeek 64 (132)
...+||||+.-.++|-.+
T Consensus 20 L~~IpGIG~kr~~~LL~~ 37 (84)
T 1z00_B 20 LLKMPGVNAKNCRSLMHH 37 (84)
T ss_dssp HHTCSSCCHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHH
Confidence 357999999998887643
No 75
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=27.53 E-value=14 Score=26.17 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=15.3
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 13 ~GIG~a~a~~l~~~G~~ 29 (235)
T 3l6e_A 13 SGLGRALTIGLVERGHQ 29 (235)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 76
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=27.41 E-value=20 Score=26.40 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=21.3
Q ss_pred ccccC---CCchHHHHhHHhcCCCccceeeecCCC
Q psy6808 47 VTELA---GVGDVLGKRLESKGFDKSINPQMFPDP 78 (132)
Q Consensus 47 Vt~LA---GIGpvLGkrLeekGFDKAYvVl~f~~~ 78 (132)
||--. |||..++++|.++|++ +++..-++
T Consensus 35 VTGasg~~GIG~~ia~~la~~G~~---V~~~~r~~ 66 (296)
T 3k31_A 35 IIGVANDKSLAWGIAKAVCAQGAE---VALTYLSE 66 (296)
T ss_dssp EECCCSTTSHHHHHHHHHHHTTCE---EEEEESSG
T ss_pred EEeCCCCCCHHHHHHHHHHHCCCE---EEEEeCCh
Confidence 55555 8999999999999964 44444443
No 77
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=27.23 E-value=17 Score=30.20 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=24.2
Q ss_pred CccccCCCchHHHHhHHhcCCCccceee
Q psy6808 46 PVTELAGVGDVLGKRLESKGFDKSINPQ 73 (132)
Q Consensus 46 ~Vt~LAGIGpvLGkrLeekGFDKAYvVl 73 (132)
+...+||||+..+++|.++|+..-+.+.
T Consensus 633 ~L~qlp~v~~~~ar~l~~~g~~s~~~l~ 660 (702)
T 2p6r_A 633 ELVRIRHIGRVRARKLYNAGIRNAEDIV 660 (702)
T ss_dssp HHHTSTTCCHHHHHHHHTTTCCSHHHHH
T ss_pred hhhcCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 4468999999999999999998777765
No 78
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=26.99 E-value=15 Score=25.43 Aligned_cols=17 Identities=24% Similarity=0.776 Sum_probs=15.3
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 12 ~gIG~~ia~~l~~~G~~ 28 (235)
T 3l77_A 12 RGIGEAIARALARDGYA 28 (235)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 79
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=26.92 E-value=20 Score=29.54 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=24.1
Q ss_pred ccCCCchHHHHhHHhc-CCCccceeeecCCCChhhe
Q psy6808 49 ELAGVGDVLGKRLESK-GFDKSINPQMFPDPDIEEK 83 (132)
Q Consensus 49 ~LAGIGpvLGkrLeek-GFDKAYvVl~f~~~~~~~~ 83 (132)
+-+||||.+..|+-.. ...+ -..+++-|+++-++
T Consensus 15 DpaGIGpEii~ka~~~~~~~~-~~~vv~Gd~~~l~~ 49 (330)
T 2hi1_A 15 DPAGIGPEIIVKALSEDGLNG-APLVVIGCLATLKR 49 (330)
T ss_dssp CTTTTHHHHHHHHHTSTTTTT-CSEEEEECHHHHHH
T ss_pred CCcchhHHHHHHHHhchhhcC-CCEEEEeCHHHHHH
Confidence 4699999999988633 2323 45677888887665
No 80
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=26.72 E-value=15 Score=25.69 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=15.8
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 18 s~giG~~~a~~l~~~G~~ 35 (253)
T 3qiv_A 18 GGGIGQAYAEALAREGAA 35 (253)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CChHHHHHHHHHHHCCCE
Confidence 368999999999999963
No 81
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=26.64 E-value=15 Score=25.48 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=16.3
Q ss_pred ccCCCchHHHHhHHhcCCC
Q psy6808 49 ELAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 49 ~LAGIGpvLGkrLeekGFD 67 (132)
.--|||..++++|.++|+.
T Consensus 22 as~gIG~~ia~~l~~~G~~ 40 (247)
T 3i1j_A 22 AARGIGAAAARAYAAHGAS 40 (247)
T ss_dssp TTSHHHHHHHHHHHHTTCE
T ss_pred CCChHHHHHHHHHHHCCCE
Confidence 3469999999999999973
No 82
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=26.45 E-value=21 Score=24.96 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=14.9
Q ss_pred CCCchHHHHhHHhcCC
Q psy6808 51 AGVGDVLGKRLESKGF 66 (132)
Q Consensus 51 AGIGpvLGkrLeekGF 66 (132)
.|||..++++|.++|.
T Consensus 26 ~giG~~ia~~l~~~G~ 41 (271)
T 3ek2_A 26 RSIAYGIAKACKREGA 41 (271)
T ss_dssp TSHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHcCC
Confidence 5999999999999996
No 83
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=26.33 E-value=16 Score=25.80 Aligned_cols=17 Identities=29% Similarity=0.669 Sum_probs=15.3
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 16 s~gIG~~~a~~l~~~G~ 32 (264)
T 3i4f_A 16 TKGLGKQVTEKLLAKGY 32 (264)
T ss_dssp TSHHHHHHHHHHHHTTC
T ss_pred CchhHHHHHHHHHHCCC
Confidence 35899999999999996
No 84
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}
Probab=26.25 E-value=25 Score=25.68 Aligned_cols=18 Identities=22% Similarity=0.645 Sum_probs=15.7
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 30 s~gIG~aia~~La~~G~~ 47 (272)
T 2nwq_A 30 TSGFGEACARRFAEAGWS 47 (272)
T ss_dssp TTSSHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHCCCE
Confidence 359999999999999963
No 85
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=25.99 E-value=40 Score=25.81 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=14.1
Q ss_pred CCchHHHHhHHhcCC
Q psy6808 52 GVGDVLGKRLESKGF 66 (132)
Q Consensus 52 GIGpvLGkrLeekGF 66 (132)
|||..+++.|.++|.
T Consensus 35 ~iG~aiA~~~~~~Ga 49 (226)
T 1u7z_A 35 KMGFAIAAAAARRGA 49 (226)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCC
Confidence 599999999999996
No 86
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...
Probab=25.56 E-value=23 Score=26.54 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=14.9
Q ss_pred CCchHHHHhHHhcCCC
Q psy6808 52 GVGDVLGKRLESKGFD 67 (132)
Q Consensus 52 GIGpvLGkrLeekGFD 67 (132)
|||..++++|.++|+.
T Consensus 15 GIG~aiA~~la~~G~~ 30 (329)
T 3lt0_A 15 GYGWGIAKELSKRNVK 30 (329)
T ss_dssp SHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHCCCE
Confidence 9999999999999964
No 87
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Probab=25.31 E-value=22 Score=25.73 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=15.3
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|.+
T Consensus 20 ~GIG~aia~~la~~G~~ 36 (297)
T 1d7o_A 20 NGYGWAVAKSLAAAGAE 36 (297)
T ss_dssp SSHHHHHHHHHHHTTCE
T ss_pred CChHHHHHHHHHHCCCe
Confidence 59999999999999963
No 88
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=25.13 E-value=19 Score=29.16 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=33.1
Q ss_pred CCCCCCCcc-ccCCCchHHHHhHHhc-C-CCccceeee--cCCCChhheeeeccCCCCc
Q psy6808 40 EPMGEKPVT-ELAGVGDVLGKRLESK-G-FDKSINPQM--FPDPDIEEKVLLFKNPNSL 93 (132)
Q Consensus 40 EPMGEK~Vt-~LAGIGpvLGkrLeek-G-FDKAYvVl~--f~~~~~~~~~~~~~~~~~~ 93 (132)
-=||-.-.- -++|||++-|.+|-.+ | .+..|.-+- -.+-+.++-.-+|.||.-.
T Consensus 245 ~L~GsDy~p~GVpGIG~KtA~kLl~~~gsle~il~~~~~~~~~~~~~~~~~~f~~p~v~ 303 (363)
T 3ory_A 245 ILLGTDYNPDGFEGIGPKKALQLVKAYGGIEKIPKPILKSPIEVDVIAIKKYFLQPQVT 303 (363)
T ss_dssp HHHCBTTBTTCSTTCCHHHHHHHHHHHTSSTTSCGGGCCCSSCCCHHHHHHHHHSCCCC
T ss_pred HHhCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhcccccCCCCHHHHHHHhcCCCCC
Confidence 357744456 7889999999999875 2 333332221 0112556667788898754
No 89
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=24.99 E-value=17 Score=25.67 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=15.3
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 21 s~GIG~~~a~~L~~~G~ 37 (311)
T 3o26_A 21 NKGIGFEICKQLSSNGI 37 (311)
T ss_dssp SSHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHCCC
Confidence 36899999999999996
No 90
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=24.97 E-value=24 Score=25.18 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=18.6
Q ss_pred ccccCCCchHHHHhHHhcCCCcc
Q psy6808 47 VTELAGVGDVLGKRLESKGFDKS 69 (132)
Q Consensus 47 Vt~LAGIGpvLGkrLeekGFDKA 69 (132)
+..-.=+|..+|+|+.++|.+++
T Consensus 65 ~~AA~~vG~llA~Ral~~GI~~v 87 (114)
T 2zjr_L 65 TDTAAAVGKALAAAAAEKGIKQV 87 (114)
T ss_dssp SSSHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEE
Confidence 34444599999999999999884
No 91
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=24.81 E-value=28 Score=24.74 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=19.3
Q ss_pred cCCCchHHHHhHHhcCCCccceeeecCCC
Q psy6808 50 LAGVGDVLGKRLESKGFDKSINPQMFPDP 78 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFDKAYvVl~f~~~ 78 (132)
--|||..++++|.++|++ +++.--++
T Consensus 31 s~gIG~~la~~l~~~G~~---V~~~~r~~ 56 (251)
T 3orf_A 31 SGALGAEVVKFFKSKSWN---TISIDFRE 56 (251)
T ss_dssp TSHHHHHHHHHHHHTTCE---EEEEESSC
T ss_pred CCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence 468999999999999964 44444443
No 92
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=24.76 E-value=17 Score=26.03 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=19.4
Q ss_pred cCCCchHHHHhHHhcCCCccceeeecCCC
Q psy6808 50 LAGVGDVLGKRLESKGFDKSINPQMFPDP 78 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFDKAYvVl~f~~~ 78 (132)
--|||..++++|.++|+. +++.--++
T Consensus 16 s~GIG~aia~~l~~~G~~---V~~~~r~~ 41 (252)
T 3h7a_A 16 GDYIGAEIAKKFAAEGFT---VFAGRRNG 41 (252)
T ss_dssp SSHHHHHHHHHHHHTTCE---EEEEESSG
T ss_pred CchHHHHHHHHHHHCCCE---EEEEeCCH
Confidence 358999999999999973 44444443
No 93
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Probab=24.76 E-value=20 Score=25.16 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=15.5
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 15 ~gIG~~~a~~l~~~G~~ 31 (254)
T 1sby_A 15 GGIGLDTSRELVKRNLK 31 (254)
T ss_dssp SHHHHHHHHHHHHTCCS
T ss_pred ChHHHHHHHHHHHCCCc
Confidence 58999999999999975
No 94
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=24.71 E-value=23 Score=25.32 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=15.8
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 20 s~gIG~aia~~l~~~G~~ 37 (264)
T 3ucx_A 20 GPALGTTLARRCAEQGAD 37 (264)
T ss_dssp CTTHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHHCcCE
Confidence 358999999999999974
No 95
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=24.70 E-value=17 Score=25.88 Aligned_cols=19 Identities=26% Similarity=0.746 Sum_probs=16.4
Q ss_pred ccCCCchHHHHhHHhcCCC
Q psy6808 49 ELAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 49 ~LAGIGpvLGkrLeekGFD 67 (132)
.--|||..++++|.++|+.
T Consensus 34 as~gIG~~la~~l~~~G~~ 52 (267)
T 4iiu_A 34 ASKGIGRAIARQLAADGFN 52 (267)
T ss_dssp TTSHHHHHHHHHHHHTTCE
T ss_pred CCChHHHHHHHHHHHCCCE
Confidence 3468999999999999974
No 96
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Probab=24.61 E-value=23 Score=25.16 Aligned_cols=25 Identities=4% Similarity=0.170 Sum_probs=18.8
Q ss_pred CCCchHHHHhHHhcCCCccceeeecCCC
Q psy6808 51 AGVGDVLGKRLESKGFDKSINPQMFPDP 78 (132)
Q Consensus 51 AGIGpvLGkrLeekGFDKAYvVl~f~~~ 78 (132)
-|||..++++|.++|++ +++.--++
T Consensus 21 ~gIG~~ia~~l~~~G~~---V~~~~r~~ 45 (265)
T 1qsg_A 21 LSIAYGIAQAMHREGAE---LAFTYQND 45 (265)
T ss_dssp TSHHHHHHHHHHHTTCE---EEEEESST
T ss_pred CCHHHHHHHHHHHCCCE---EEEEcCcH
Confidence 49999999999999964 44444444
No 97
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=24.43 E-value=18 Score=25.99 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=15.7
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|+.
T Consensus 17 s~GIG~aia~~la~~G~~ 34 (259)
T 3edm_A 17 GRDIGRACAIRFAQEGAN 34 (259)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CchHHHHHHHHHHHCCCE
Confidence 358999999999999973
No 98
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=24.41 E-value=27 Score=24.69 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=19.2
Q ss_pred cCCCchHHHHhHHhcCCCccceeeecCCC
Q psy6808 50 LAGVGDVLGKRLESKGFDKSINPQMFPDP 78 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFDKAYvVl~f~~~ 78 (132)
--|||..++++|.++|+. +++.--++
T Consensus 16 s~gIG~aia~~l~~~G~~---V~~~~r~~ 41 (257)
T 3tpc_A 16 SSGLGAAVTRMLAQEGAT---VLGLDLKP 41 (257)
T ss_dssp TSHHHHHHHHHHHHTTCE---EEEEESSC
T ss_pred CCHHHHHHHHHHHHCCCE---EEEEeCCh
Confidence 368999999999999963 44443443
No 99
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=24.28 E-value=16 Score=24.84 Aligned_cols=17 Identities=24% Similarity=0.645 Sum_probs=15.2
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 12 ggiG~~la~~l~~~G~~ 28 (242)
T 1uay_A 12 SGLGRAAALALKARGYR 28 (242)
T ss_dssp SHHHHHHHHHHHHHTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 100
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=24.06 E-value=18 Score=25.15 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=15.1
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 11 ~gIG~~~a~~l~~~G~~ 27 (257)
T 1fjh_A 11 TGIGAATRKVLEAAGHQ 27 (257)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 48999999999999963
No 101
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=24.03 E-value=40 Score=20.21 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=14.8
Q ss_pred hHHHHhHHhcCCCcccee
Q psy6808 55 DVLGKRLESKGFDKSINP 72 (132)
Q Consensus 55 pvLGkrLeekGFDKAYvV 72 (132)
...+..|.+.||+..|.+
T Consensus 55 ~~aa~~L~~~G~~~v~~l 72 (85)
T 2jtq_A 55 GQAKEILSEMGYTHVENA 72 (85)
T ss_dssp HHHHHHHHHTTCSSEEEE
T ss_pred HHHHHHHHHcCCCCEEec
Confidence 467889999999988764
No 102
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=23.99 E-value=18 Score=25.92 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=16.3
Q ss_pred ccCCCchHHHHhHHhcCCC
Q psy6808 49 ELAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 49 ~LAGIGpvLGkrLeekGFD 67 (132)
.--|||..++++|.++|+.
T Consensus 37 as~gIG~~la~~l~~~G~~ 55 (271)
T 4iin_A 37 ASKGIGAEIAKTLASMGLK 55 (271)
T ss_dssp CSSHHHHHHHHHHHHTTCE
T ss_pred CCcHHHHHHHHHHHHCCCE
Confidence 3468999999999999973
No 103
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=23.98 E-value=18 Score=25.10 Aligned_cols=17 Identities=35% Similarity=0.673 Sum_probs=15.3
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 16 s~gIG~~~a~~l~~~G~ 32 (255)
T 3icc_A 16 SRGIGRAIAKRLANDGA 32 (255)
T ss_dssp SSHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHCCC
Confidence 36899999999999995
No 104
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=23.95 E-value=18 Score=25.19 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=15.3
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 23 s~gIG~~~a~~l~~~G~ 39 (249)
T 3f9i_A 23 SSGIGSAIARLLHKLGS 39 (249)
T ss_dssp TSHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHCCC
Confidence 36899999999999995
No 105
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=23.75 E-value=25 Score=25.97 Aligned_cols=17 Identities=12% Similarity=0.136 Sum_probs=15.0
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|.+
T Consensus 43 ~GIG~aia~~la~~G~~ 59 (293)
T 3grk_A 43 RSIAWGIAKAAREAGAE 59 (293)
T ss_dssp SSHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHCCCE
Confidence 45999999999999964
No 106
>3mtx_A Protein MD-1; LY86, RP105 associated protein, immune system; HET: PGT PGE; 2.00A {Gallus gallus} PDB: 3mu3_A*
Probab=23.68 E-value=17 Score=27.67 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=11.8
Q ss_pred EeeeeeeecCCc-cCCcccccc
Q psy6808 101 VLGYTKIKNNKS-RYPYLDYGC 121 (132)
Q Consensus 101 ~~~~~~~~~~~~-~~~~~~~~~ 121 (132)
-+-|++.-++++ ++|==.|-|
T Consensus 98 ~i~~~~~v~~pg~~~p~G~Y~v 119 (151)
T 3mtx_A 98 HLYYEGPITLGIKEIPQRDYTI 119 (151)
T ss_dssp EEEEEEEEECCCSSCCCEEEEE
T ss_pred eEEEEEEeecCceecCCCcEEE
Confidence 334555555555 666666555
No 107
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=23.67 E-value=36 Score=25.20 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=20.6
Q ss_pred CCccccCCCchHHHHhHHhcCCCcc
Q psy6808 45 KPVTELAGVGDVLGKRLESKGFDKS 69 (132)
Q Consensus 45 K~Vt~LAGIGpvLGkrLeekGFDKA 69 (132)
+....|+|||+.-+.-..--+|++.
T Consensus 115 ~~L~~lpGIG~~TA~~il~~~~~~~ 139 (221)
T 1kea_A 115 KAILDLPGVGKYTCAAVMCLAFGKK 139 (221)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCCC
T ss_pred HHHHhCCCCcHHHHHHHHHHhcCCC
Confidence 3456799999999998888888874
No 108
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=23.66 E-value=19 Score=25.11 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=19.1
Q ss_pred cCCCchHHHHhHHhcCCCccceeeecCCC
Q psy6808 50 LAGVGDVLGKRLESKGFDKSINPQMFPDP 78 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFDKAYvVl~f~~~ 78 (132)
--|||..++++|.++|+. +++.-.++
T Consensus 14 s~gIG~~~a~~l~~~G~~---v~~~~r~~ 39 (247)
T 3lyl_A 14 SRGIGFEVAHALASKGAT---VVGTATSQ 39 (247)
T ss_dssp SSHHHHHHHHHHHHTTCE---EEEEESSH
T ss_pred CChHHHHHHHHHHHCCCE---EEEEeCCH
Confidence 368999999999999963 44444443
No 109
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=23.60 E-value=19 Score=25.65 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=15.3
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 21 s~gIG~aia~~l~~~G~ 37 (252)
T 3f1l_A 21 SDGIGREAAMTYARYGA 37 (252)
T ss_dssp TSHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHCCC
Confidence 35899999999999997
No 110
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=23.54 E-value=19 Score=25.60 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=15.3
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 20 ~gIG~~ia~~l~~~G~~ 36 (287)
T 3pxx_A 20 RGQGRSHAVKLAEEGAD 36 (287)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCe
Confidence 58999999999999963
No 111
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=23.53 E-value=21 Score=25.93 Aligned_cols=19 Identities=21% Similarity=0.671 Sum_probs=16.2
Q ss_pred ccCCCchHHHHhHHhcCCC
Q psy6808 49 ELAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 49 ~LAGIGpvLGkrLeekGFD 67 (132)
.--|||..++++|.++|++
T Consensus 24 as~gIG~aia~~l~~~G~~ 42 (266)
T 3p19_A 24 ASSGIGEAIARRFSEEGHP 42 (266)
T ss_dssp TTSHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHCCCE
Confidence 3468999999999999963
No 112
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=23.47 E-value=19 Score=25.30 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=14.8
Q ss_pred CCCchHHHHhHHhcCC
Q psy6808 51 AGVGDVLGKRLESKGF 66 (132)
Q Consensus 51 AGIGpvLGkrLeekGF 66 (132)
-|||..++++|.++|+
T Consensus 19 ~gIG~~~a~~l~~~G~ 34 (261)
T 3n74_A 19 SGFGEGMAKRFAKGGA 34 (261)
T ss_dssp SHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHCCC
Confidence 5899999999999996
No 113
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=23.32 E-value=39 Score=21.36 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=19.0
Q ss_pred CCCccccCCCc---hHHHHhHHhcCCCcccee
Q psy6808 44 EKPVTELAGVG---DVLGKRLESKGFDKSINP 72 (132)
Q Consensus 44 EK~Vt~LAGIG---pvLGkrLeekGFDKAYvV 72 (132)
+++|--.-.-| ...+..|.+.||+++|++
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l 83 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVSEL 83 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEEEC
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEEEe
Confidence 45554443333 456778999999988765
No 114
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=23.20 E-value=26 Score=25.71 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=15.9
Q ss_pred ccCCCchHHHHhHHhcCC
Q psy6808 49 ELAGVGDVLGKRLESKGF 66 (132)
Q Consensus 49 ~LAGIGpvLGkrLeekGF 66 (132)
.--|||..++++|.++|+
T Consensus 37 as~gIG~aia~~la~~G~ 54 (277)
T 3gvc_A 37 AGAGIGLAVARRLADEGC 54 (277)
T ss_dssp TTSTHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHCCC
Confidence 346999999999999996
No 115
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=23.20 E-value=18 Score=25.38 Aligned_cols=17 Identities=6% Similarity=0.179 Sum_probs=15.2
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 17 ~gIG~~ia~~l~~~G~~ 33 (241)
T 1dhr_A 17 GALGSRCVQAFRARNWW 33 (241)
T ss_dssp SHHHHHHHHHHHTTTCE
T ss_pred cHHHHHHHHHHHhCCCE
Confidence 58999999999999963
No 116
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=23.18 E-value=19 Score=25.39 Aligned_cols=17 Identities=24% Similarity=0.714 Sum_probs=15.3
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|.+
T Consensus 14 ~gIG~~ia~~l~~~G~~ 30 (246)
T 3osu_A 14 RGIGRSIALQLAEEGYN 30 (246)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 117
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=23.03 E-value=20 Score=25.16 Aligned_cols=17 Identities=24% Similarity=0.720 Sum_probs=15.2
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 12 ~giG~~~a~~l~~~G~~ 28 (239)
T 2ekp_A 12 RGIGRAIAEALVARGYR 28 (239)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 118
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Probab=22.99 E-value=20 Score=24.67 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=15.1
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 11 ggiG~~la~~l~~~G~~ 27 (244)
T 1edo_A 11 RGIGKAIALSLGKAGCK 27 (244)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 48999999999999963
No 119
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=22.97 E-value=29 Score=24.77 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=19.1
Q ss_pred HHHhhhcCCCCCCCc----cccCCCchHHHHhHHhcCCC
Q psy6808 33 KHQNFVSEPMGEKPV----TELAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 33 KHRnFVsEPMGEK~V----t~LAGIGpvLGkrLeekGFD 67 (132)
-|+|+.-.+|-+..+ ..--|||..++++|.++|+.
T Consensus 14 ~~~n~~~~~m~~~k~vlITGas~gIG~a~a~~l~~~G~~ 52 (272)
T 4e3z_A 14 GTENLYFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWR 52 (272)
T ss_dssp ----------CCSCEEEETTTTSHHHHHHHHHHHHTTCE
T ss_pred CChhhhhhhccCCCEEEEECCCchHHHHHHHHHHHCCCE
Confidence 455666666765543 34468999999999999974
No 120
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=22.97 E-value=20 Score=25.58 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=15.8
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|.+
T Consensus 18 s~gIG~a~a~~l~~~G~~ 35 (248)
T 3op4_A 18 SRGIGKAIAELLAERGAK 35 (248)
T ss_dssp SSHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHCCCE
Confidence 368999999999999964
No 121
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=22.95 E-value=20 Score=25.66 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=15.8
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 22 s~gIG~~ia~~l~~~G~~ 39 (278)
T 3sx2_A 22 ARGQGRAHAVRLAADGAD 39 (278)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CChHHHHHHHHHHHCCCe
Confidence 358999999999999964
No 122
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...
Probab=22.95 E-value=26 Score=25.04 Aligned_cols=18 Identities=6% Similarity=0.113 Sum_probs=15.9
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 18 s~gIG~aia~~l~~~G~~ 35 (269)
T 2h7i_A 18 DSSIAFHIARVAQEQGAQ 35 (269)
T ss_dssp TTSHHHHHHHHHHHTTCE
T ss_pred CCchHHHHHHHHHHCCCE
Confidence 469999999999999963
No 123
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=22.79 E-value=20 Score=24.64 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.2
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 17 ggiG~~~a~~l~~~G~~ 33 (244)
T 1cyd_A 17 KGIGRDTVKALHASGAK 33 (244)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 124
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=22.73 E-value=27 Score=24.62 Aligned_cols=17 Identities=18% Similarity=0.218 Sum_probs=15.1
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|.+
T Consensus 32 ~giG~~~a~~l~~~G~~ 48 (267)
T 3gdg_A 32 KGMGIEAARGCAEMGAA 48 (267)
T ss_dssp SSHHHHHHHHHHHTSCE
T ss_pred CChHHHHHHHHHHCCCe
Confidence 49999999999999963
No 125
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=22.63 E-value=20 Score=25.41 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=14.8
Q ss_pred CCCchHHHHhHHhcCC
Q psy6808 51 AGVGDVLGKRLESKGF 66 (132)
Q Consensus 51 AGIGpvLGkrLeekGF 66 (132)
-|||..++++|.++|+
T Consensus 12 ~gIG~~ia~~l~~~G~ 27 (247)
T 3dii_A 12 HGIGKQICLDFLEAGD 27 (247)
T ss_dssp SHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHCCC
Confidence 5899999999999996
No 126
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=22.47 E-value=20 Score=25.74 Aligned_cols=17 Identities=35% Similarity=0.733 Sum_probs=15.3
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 14 ~gIG~aia~~l~~~G~~ 30 (258)
T 3oid_A 14 RGVGKAAAIRLAENGYN 30 (258)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred chHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 127
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=22.41 E-value=20 Score=25.61 Aligned_cols=17 Identities=29% Similarity=0.677 Sum_probs=15.5
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 39 s~GIG~aia~~l~~~G~ 55 (281)
T 3ppi_A 39 AGGLGEATVRRLHADGL 55 (281)
T ss_dssp TSHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHCCC
Confidence 36999999999999996
No 128
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=22.28 E-value=39 Score=25.06 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=20.9
Q ss_pred CCccccCCCchHHHHhHHhcCCCcc
Q psy6808 45 KPVTELAGVGDVLGKRLESKGFDKS 69 (132)
Q Consensus 45 K~Vt~LAGIGpvLGkrLeekGFDKA 69 (132)
+....|+|||+.-+.-.--.+|++.
T Consensus 121 ~~L~~lpGIG~kTA~~il~~a~~~~ 145 (218)
T 1pu6_A 121 EWLLDQKGIGKESADAILCYACAKE 145 (218)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCCS
T ss_pred HHHHcCCCcCHHHHHHHHHHHCCCC
Confidence 4467899999999999888888873
No 129
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=22.27 E-value=21 Score=25.45 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=15.7
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|+.
T Consensus 17 s~gIG~~ia~~l~~~G~~ 34 (259)
T 4e6p_A 17 ARGIGRAFAEAYVREGAT 34 (259)
T ss_dssp SSHHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHHCCCE
Confidence 368999999999999963
No 130
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=22.20 E-value=17 Score=25.53 Aligned_cols=18 Identities=33% Similarity=0.813 Sum_probs=15.8
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|+.
T Consensus 22 s~giG~~ia~~l~~~G~~ 39 (256)
T 3ezl_A 22 MGGIGTSICQRLHKDGFR 39 (256)
T ss_dssp TSHHHHHHHHHHHHTTEE
T ss_pred CChHHHHHHHHHHHCCCE
Confidence 469999999999999963
No 131
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=22.18 E-value=21 Score=25.13 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=15.2
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 14 ~giG~~ia~~l~~~G~~ 30 (246)
T 2uvd_A 14 RGIGRAIAIDLAKQGAN 30 (246)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 132
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=22.17 E-value=21 Score=25.26 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=15.2
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 23 s~gIG~~ia~~l~~~G~ 39 (260)
T 2zat_A 23 TDGIGLAIARRLAQDGA 39 (260)
T ss_dssp SSHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHCCC
Confidence 35899999999999996
No 133
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=22.16 E-value=21 Score=24.69 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=15.7
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 20 sggiG~~la~~l~~~G~~ 37 (254)
T 2wsb_A 20 GSGIGLEICRAFAASGAR 37 (254)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHHCCCE
Confidence 368999999999999963
No 134
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=22.12 E-value=21 Score=24.62 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=14.8
Q ss_pred CCCchHHHHhHHhcCC
Q psy6808 51 AGVGDVLGKRLESKGF 66 (132)
Q Consensus 51 AGIGpvLGkrLeekGF 66 (132)
-|||..++++|.++|+
T Consensus 12 ggiG~~~a~~l~~~G~ 27 (250)
T 2cfc_A 12 SGNGLAIATRFLARGD 27 (250)
T ss_dssp SHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHCCC
Confidence 5899999999999996
No 135
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=22.10 E-value=21 Score=25.26 Aligned_cols=18 Identities=28% Similarity=0.649 Sum_probs=15.6
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 16 s~gIG~~ia~~l~~~G~~ 33 (249)
T 2ew8_A 16 ANGIGRAIAERFAVEGAD 33 (249)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHHCCCE
Confidence 358999999999999963
No 136
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=22.10 E-value=21 Score=25.32 Aligned_cols=18 Identities=22% Similarity=0.551 Sum_probs=15.7
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 16 s~gIG~aia~~l~~~G~~ 33 (247)
T 2jah_A 16 SSGIGEATARALAAEGAA 33 (247)
T ss_dssp SSHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHCCCE
Confidence 358999999999999963
No 137
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=22.08 E-value=21 Score=24.54 Aligned_cols=18 Identities=28% Similarity=0.671 Sum_probs=15.5
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 14 sggiG~~~a~~l~~~G~~ 31 (234)
T 2ehd_A 14 SRGIGEATARLLHAKGYR 31 (234)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHHCCCE
Confidence 358999999999999963
No 138
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}
Probab=22.07 E-value=19 Score=25.48 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.7
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|.+
T Consensus 18 s~gIG~aia~~l~~~G~~ 35 (257)
T 3tl3_A 18 ASGLGLATTKRLLDAGAQ 35 (257)
T ss_dssp TSHHHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHHHCCCE
Confidence 368999999999999963
No 139
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=22.07 E-value=39 Score=27.00 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=19.9
Q ss_pred cCCCCCCCccccCCCchHHHHhHHhc
Q psy6808 39 SEPMGEKPVTELAGVGDVLGKRLESK 64 (132)
Q Consensus 39 sEPMGEK~Vt~LAGIGpvLGkrLeek 64 (132)
+--||-..+.-+||||++-|.+|-.+
T Consensus 226 ~~L~G~D~~~gipGiG~KtA~kll~~ 251 (341)
T 3q8k_A 226 CILLGSDYCESIRGIGPKRAVDLIQK 251 (341)
T ss_dssp HHHHCCSSSCCCTTCCHHHHHHHHHH
T ss_pred HHhcCCCCCCCCCCccHHHHHHHHHH
Confidence 33688455678999999999888764
No 140
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=22.02 E-value=34 Score=24.65 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=15.2
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 30 s~gIG~aia~~l~~~G~ 46 (253)
T 2nm0_A 30 NRGIGLAIARAFADAGD 46 (253)
T ss_dssp TSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHCCC
Confidence 35899999999999996
No 141
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A
Probab=22.01 E-value=21 Score=24.62 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=15.6
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 15 sggiG~~~a~~l~~~G~~ 32 (251)
T 1zk4_A 15 TLGIGLAIATKFVEEGAK 32 (251)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CChHHHHHHHHHHHCCCE
Confidence 358999999999999964
No 142
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=21.96 E-value=21 Score=25.65 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=15.3
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 27 s~gIG~aia~~l~~~G~ 43 (270)
T 3is3_A 27 GRGIGAAVAVHLGRLGA 43 (270)
T ss_dssp TSHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHCCC
Confidence 35899999999999996
No 143
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=21.95 E-value=41 Score=21.07 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=15.2
Q ss_pred chHHHHhHHhcCCCcccee
Q psy6808 54 GDVLGKRLESKGFDKSINP 72 (132)
Q Consensus 54 GpvLGkrLeekGFDKAYvV 72 (132)
....+..|.+.||+.+|.+
T Consensus 71 s~~a~~~L~~~G~~~v~~l 89 (108)
T 1gmx_A 71 SKGAAQYLLQQGYDVVYSI 89 (108)
T ss_dssp HHHHHHHHHHHTCSSEEEE
T ss_pred HHHHHHHHHHcCCceEEEe
Confidence 3567789999999988755
No 144
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=21.92 E-value=20 Score=25.70 Aligned_cols=18 Identities=28% Similarity=0.761 Sum_probs=15.9
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 34 s~gIG~~~a~~l~~~G~~ 51 (269)
T 3gk3_A 34 MGGLGAAISRRLHDAGMA 51 (269)
T ss_dssp TSHHHHHHHHHHHTTTCE
T ss_pred CchHHHHHHHHHHHCCCE
Confidence 468999999999999974
No 145
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=21.85 E-value=21 Score=25.40 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.7
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 22 s~gIG~~ia~~l~~~G~~ 39 (267)
T 1iy8_A 22 GSGLGRATAVRLAAEGAK 39 (267)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHCCCE
Confidence 468999999999999963
No 146
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}
Probab=21.83 E-value=28 Score=25.61 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=15.8
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 20 s~GIG~aia~~la~~G~~ 37 (319)
T 2ptg_A 20 SNGYGWAICKLLRAAGAR 37 (319)
T ss_dssp TTSHHHHHHHHHHHTTCE
T ss_pred CCcHHHHHHHHHHHCCCE
Confidence 369999999999999963
No 147
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=21.77 E-value=21 Score=25.57 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=15.4
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 17 s~gIG~a~a~~l~~~G~ 33 (255)
T 4eso_A 17 THGMGLATVRRLVEGGA 33 (255)
T ss_dssp SSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHCCC
Confidence 46899999999999996
No 148
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=21.77 E-value=21 Score=25.42 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=15.2
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|.
T Consensus 15 s~gIG~aia~~l~~~G~ 31 (257)
T 3imf_A 15 SSGMGKGMATRFAKEGA 31 (257)
T ss_dssp TSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHCCC
Confidence 35899999999999996
No 149
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=21.77 E-value=21 Score=25.35 Aligned_cols=16 Identities=31% Similarity=0.713 Sum_probs=15.0
Q ss_pred CCCchHHHHhHHhcCC
Q psy6808 51 AGVGDVLGKRLESKGF 66 (132)
Q Consensus 51 AGIGpvLGkrLeekGF 66 (132)
-|||..++++|.++|+
T Consensus 16 ~gIG~a~a~~l~~~G~ 31 (247)
T 3rwb_A 16 QGIGKAIAARLAADGA 31 (247)
T ss_dssp SHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHCCC
Confidence 5899999999999996
No 150
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*
Probab=21.76 E-value=27 Score=25.80 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=15.5
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|.+
T Consensus 21 ~GIG~aia~~la~~G~~ 37 (315)
T 2o2s_A 21 HGYGWAIAKHLASAGAR 37 (315)
T ss_dssp SSHHHHHHHHHHTTTCE
T ss_pred CChHHHHHHHHHHCCCE
Confidence 69999999999999963
No 151
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=21.74 E-value=21 Score=25.58 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=15.4
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 19 s~gIG~aia~~l~~~G~ 35 (262)
T 3pk0_A 19 TKGIGRGIATVFARAGA 35 (262)
T ss_dssp SSHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHCCC
Confidence 46899999999999997
No 152
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=21.71 E-value=30 Score=24.45 Aligned_cols=26 Identities=23% Similarity=0.306 Sum_probs=21.3
Q ss_pred CCCccccCCCchHHHHhHHhcCCCcc
Q psy6808 44 EKPVTELAGVGDVLGKRLESKGFDKS 69 (132)
Q Consensus 44 EK~Vt~LAGIGpvLGkrLeekGFDKA 69 (132)
-..+..-.=||..+|+|+.++|.+++
T Consensus 64 ~~n~~AA~~vG~llA~Ral~~GI~~v 89 (116)
T 3r8s_O 64 TGNKDAAAAVGKAVAERALEKGIKDV 89 (116)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEE
Confidence 44556677799999999999999764
No 153
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=21.61 E-value=22 Score=25.24 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=15.3
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 16 ~giG~~ia~~l~~~G~~ 32 (253)
T 1hxh_A 16 SGVGLEVVKLLLGEGAK 32 (253)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 154
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=21.61 E-value=22 Score=26.12 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=15.3
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 14 ~GIG~aia~~la~~G~~ 30 (264)
T 3tfo_A 14 GGIGEGIARELGVAGAK 30 (264)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 155
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=21.60 E-value=31 Score=24.94 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=15.8
Q ss_pred ccccCCCchHHHHhHHhc
Q psy6808 47 VTELAGVGDVLGKRLESK 64 (132)
Q Consensus 47 Vt~LAGIGpvLGkrLeek 64 (132)
...++|||+..+++|.+.
T Consensus 164 L~~i~gVg~~~a~~Ll~~ 181 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILER 181 (219)
T ss_dssp HHTSTTCCHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHH
Confidence 457999999999999986
No 156
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=21.53 E-value=22 Score=25.95 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=15.8
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|+.
T Consensus 40 s~GIG~aia~~la~~G~~ 57 (271)
T 3v2g_A 40 SRGIGAAIAKRLALEGAA 57 (271)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHHCCCE
Confidence 368999999999999963
No 157
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=21.41 E-value=22 Score=24.46 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=14.8
Q ss_pred CCCchHHHHhHHhcCC
Q psy6808 51 AGVGDVLGKRLESKGF 66 (132)
Q Consensus 51 AGIGpvLGkrLeekGF 66 (132)
-|||..++++|.++|+
T Consensus 15 ggiG~~~a~~l~~~G~ 30 (247)
T 2hq1_A 15 RGLGKAIAWKLGNMGA 30 (247)
T ss_dssp SHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHCCC
Confidence 5899999999999996
No 158
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=21.40 E-value=18 Score=25.26 Aligned_cols=16 Identities=13% Similarity=0.463 Sum_probs=14.8
Q ss_pred CCCchHHHHhHHhcCC
Q psy6808 51 AGVGDVLGKRLESKGF 66 (132)
Q Consensus 51 AGIGpvLGkrLeekGF 66 (132)
-|||..++++|.++|+
T Consensus 13 ~gIG~~~a~~l~~~G~ 28 (236)
T 1ooe_A 13 GALGSAILEFFKKNGY 28 (236)
T ss_dssp SHHHHHHHHHHHHTTE
T ss_pred cHHHHHHHHHHHHCCC
Confidence 5899999999999995
No 159
>3d7q_A XISI protein-like; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.30A {Nostoc punctiforme pcc 73102}
Probab=21.39 E-value=28 Score=25.05 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=26.7
Q ss_pred CCCchHHHHhHHhcCCCccceeeecCCCChhh
Q psy6808 51 AGVGDVLGKRLESKGFDKSINPQMFPDPDIEE 82 (132)
Q Consensus 51 AGIGpvLGkrLeekGFDKAYvVl~f~~~~~~~ 82 (132)
.|.-.-+|..|.++|..|-..||-|-.|...+
T Consensus 74 d~TE~gIa~eLv~~GVpk~dIVLgF~~P~~R~ 105 (112)
T 3d7q_A 74 NTTEADIALELMEMGIDKQDIVIGFHTPKMRQ 105 (112)
T ss_dssp ECSSCCHHHHHHTTTCCGGGEEETTSCHHHHT
T ss_pred CCccccHHHHHHHcCCCHHHEEEccCCccccc
Confidence 45556688999999999999999999887653
No 160
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Probab=21.38 E-value=22 Score=25.20 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=15.2
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 25 ~gIG~~ia~~l~~~G~~ 41 (247)
T 1uzm_A 25 RGIGLAIAQRLAADGHK 41 (247)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 161
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=21.36 E-value=22 Score=25.80 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=16.2
Q ss_pred ccCCCchHHHHhHHhcCCC
Q psy6808 49 ELAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 49 ~LAGIGpvLGkrLeekGFD 67 (132)
.--|||..++++|.++|++
T Consensus 36 as~gIG~aia~~la~~G~~ 54 (269)
T 4dmm_A 36 ASRGIGRAIALELAAAGAK 54 (269)
T ss_dssp CSSHHHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHCCCE
Confidence 3468999999999999964
No 162
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=21.34 E-value=25 Score=25.46 Aligned_cols=26 Identities=19% Similarity=0.081 Sum_probs=19.2
Q ss_pred cCCCchHHHHhHHhcCCCccceeeecCCC
Q psy6808 50 LAGVGDVLGKRLESKGFDKSINPQMFPDP 78 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFDKAYvVl~f~~~ 78 (132)
--|||..++++|.++|.+ +++.--++
T Consensus 36 s~gIG~aia~~l~~~G~~---V~~~~r~~ 61 (260)
T 3gem_A 36 SQRVGLHCALRLLEHGHR---VIISYRTE 61 (260)
T ss_dssp TSHHHHHHHHHHHHTTCC---EEEEESSC
T ss_pred CCHHHHHHHHHHHHCCCE---EEEEeCCh
Confidence 368999999999999963 44444443
No 163
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=21.24 E-value=20 Score=27.99 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHhhhcCCCCCCCccccCCCchHHHHhHHhc
Q psy6808 34 HQNFVSEPMGEKPVTELAGVGDVLGKRLESK 64 (132)
Q Consensus 34 HRnFVsEPMGEK~Vt~LAGIGpvLGkrLeek 64 (132)
||.--+.-+-.-....+||||+..+++|.+.
T Consensus 162 hr~~r~k~~~~s~L~~IpGIG~k~ak~Ll~~ 192 (226)
T 3c65_A 162 HRKTRQKTMFHSVLDDIPGVGEKRKKALLNY 192 (226)
T ss_dssp -------------------------------
T ss_pred cccccccccccccccccCCCCHHHHHHHHHH
Confidence 4444445555566789999999999999876
No 164
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=21.22 E-value=22 Score=24.40 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=15.7
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 16 sggiG~~~a~~l~~~G~~ 33 (258)
T 3afn_B 16 SQGIGLATARLFARAGAK 33 (258)
T ss_dssp SSHHHHHHHHHHHHTTCE
T ss_pred CChHHHHHHHHHHHCCCE
Confidence 468999999999999973
No 165
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=21.21 E-value=22 Score=25.14 Aligned_cols=16 Identities=25% Similarity=0.663 Sum_probs=14.9
Q ss_pred CCCchHHHHhHHhcCC
Q psy6808 51 AGVGDVLGKRLESKGF 66 (132)
Q Consensus 51 AGIGpvLGkrLeekGF 66 (132)
-|||..++++|.++|+
T Consensus 22 ~gIG~~ia~~l~~~G~ 37 (263)
T 3ak4_A 22 KGIGAAIARALDKAGA 37 (263)
T ss_dssp SHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHCCC
Confidence 5899999999999996
No 166
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=21.17 E-value=20 Score=34.56 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=31.1
Q ss_pred CCccccCCCchHHHHhHHhcCCCccceeeecCCCChhheeeec
Q psy6808 45 KPVTELAGVGDVLGKRLESKGFDKSINPQMFPDPDIEEKVLLF 87 (132)
Q Consensus 45 K~Vt~LAGIGpvLGkrLeekGFDKAYvVl~f~~~~~~~~~~~~ 87 (132)
-+...|||||+..+++|.++|+..-+.+.-. ||+-.+++|-+
T Consensus 1557 ~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~-~~~~~~~ll~~ 1598 (1724)
T 4f92_B 1557 SYLKQLPHFTSEHIKRCTDKGVESVFDIMEM-EDEERNALLQL 1598 (1724)
T ss_dssp CGGGGSTTCCHHHHHHHHHHTCCSHHHHHSS-CHHHHTTSSCC
T ss_pred cCEecCCCCCHHHHHHHHHCCCCCHHHHHhC-CHHHHHHHHCC
Confidence 4678999999999999999999888776543 44434444433
No 167
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=21.15 E-value=37 Score=21.34 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=22.1
Q ss_pred CCCCCC-ccccCCCchHHHHhHHhcCCCccc
Q psy6808 41 PMGEKP-VTELAGVGDVLGKRLESKGFDKSI 70 (132)
Q Consensus 41 PMGEK~-Vt~LAGIGpvLGkrLeekGFDKAY 70 (132)
+.|++. |..+.| ++.+.++|.+.||..=-
T Consensus 8 ~~G~~~~I~~i~~-~~~~~~rL~~lGl~pG~ 37 (81)
T 2k5l_A 8 KCGQTVKVVKLHG-TGALKRRIMDMGITRGC 37 (81)
T ss_dssp CTTCEEEEEEECS-SSHHHHHHHHHTCCTTC
T ss_pred CCcCEEEEEEEEC-CHHHHHHHHHCCCCCCC
Confidence 456664 677877 88899999999995443
No 168
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}
Probab=21.15 E-value=22 Score=25.81 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=15.3
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 37 s~gIG~aia~~la~~G~ 53 (266)
T 3uxy_A 37 AGGIGGAVVTALRAAGA 53 (266)
T ss_dssp TSHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHCCC
Confidence 35899999999999996
No 169
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=21.14 E-value=23 Score=24.88 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=15.3
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 25 sggiG~~~a~~l~~~G~ 41 (278)
T 2bgk_A 25 AGGIGETTAKLFVRYGA 41 (278)
T ss_dssp TSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHCCC
Confidence 36899999999999996
No 170
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=21.12 E-value=21 Score=25.57 Aligned_cols=17 Identities=29% Similarity=0.720 Sum_probs=15.4
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 16 s~GIG~aia~~l~~~G~ 32 (250)
T 3nyw_A 16 SQGIGAVIAAGLATDGY 32 (250)
T ss_dssp TSHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHCCC
Confidence 36899999999999996
No 171
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=21.11 E-value=21 Score=25.57 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=15.7
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 21 s~gIG~~ia~~l~~~G~~ 38 (256)
T 3gaf_A 21 AAGIGRAIAGTFAKAGAS 38 (256)
T ss_dssp SSHHHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHHHCCCE
Confidence 358999999999999964
No 172
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=21.08 E-value=23 Score=24.60 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=15.3
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 22 sggiG~~la~~l~~~G~ 38 (260)
T 3awd_A 22 AQNIGLACVTALAEAGA 38 (260)
T ss_dssp TSHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHCCC
Confidence 46899999999999996
No 173
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}
Probab=21.05 E-value=28 Score=24.68 Aligned_cols=19 Identities=21% Similarity=0.379 Sum_probs=16.1
Q ss_pred ccCCCchHHHHhHHhcCCC
Q psy6808 49 ELAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 49 ~LAGIGpvLGkrLeekGFD 67 (132)
.--|||..++++|.++|++
T Consensus 42 asggIG~~la~~L~~~G~~ 60 (279)
T 3ctm_A 42 SSGGIGWAVAEAYAQAGAD 60 (279)
T ss_dssp TTSSHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHHHHHCCCE
Confidence 3458999999999999963
No 174
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=21.03 E-value=23 Score=24.94 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=14.8
Q ss_pred CCCchHHHHhHHhcCC
Q psy6808 51 AGVGDVLGKRLESKGF 66 (132)
Q Consensus 51 AGIGpvLGkrLeekGF 66 (132)
-|||..++++|.++|+
T Consensus 16 ~gIG~~ia~~l~~~G~ 31 (246)
T 2ag5_A 16 QGIGQAAALAFAREGA 31 (246)
T ss_dssp SHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHCCC
Confidence 5899999999999996
No 175
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=21.00 E-value=23 Score=25.54 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=15.4
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 24 s~gIG~a~a~~la~~G~ 40 (280)
T 3pgx_A 24 ARGQGRSHAVRLAAEGA 40 (280)
T ss_dssp TSHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHCCC
Confidence 46899999999999996
No 176
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=20.99 E-value=23 Score=25.42 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=15.6
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 16 s~gIG~~ia~~l~~~G~~ 33 (260)
T 1nff_A 16 ARGMGASHVRAMVAEGAK 33 (260)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHCCCE
Confidence 358999999999999963
No 177
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=20.99 E-value=23 Score=25.09 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=15.3
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 15 ~giG~~ia~~l~~~G~~ 31 (245)
T 1uls_A 15 HGIGRATLELFAKEGAR 31 (245)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 178
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}
Probab=20.95 E-value=31 Score=24.92 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=18.8
Q ss_pred CCCchHHHHhHHhcCCCccceeeecCCC
Q psy6808 51 AGVGDVLGKRLESKGFDKSINPQMFPDP 78 (132)
Q Consensus 51 AGIGpvLGkrLeekGFDKAYvVl~f~~~ 78 (132)
-|||..++++|.++|.+ +++.--++
T Consensus 33 ~gIG~~ia~~l~~~G~~---V~~~~r~~ 57 (285)
T 2p91_A 33 RSIAYGIAKSFHREGAQ---LAFTYATP 57 (285)
T ss_dssp TSHHHHHHHHHHHTTCE---EEEEESSG
T ss_pred CcHHHHHHHHHHHcCCE---EEEEeCCH
Confidence 39999999999999963 44444444
No 179
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*
Probab=20.95 E-value=23 Score=25.19 Aligned_cols=16 Identities=31% Similarity=0.698 Sum_probs=14.8
Q ss_pred CCCchHHHHhHHhcCC
Q psy6808 51 AGVGDVLGKRLESKGF 66 (132)
Q Consensus 51 AGIGpvLGkrLeekGF 66 (132)
-|||..++++|.++|+
T Consensus 21 ~gIG~~ia~~l~~~G~ 36 (276)
T 1mxh_A 21 RRIGHSIAVRLHQQGF 36 (276)
T ss_dssp SHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHCCC
Confidence 5899999999999996
No 180
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=20.87 E-value=23 Score=25.21 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.6
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 15 s~gIG~~ia~~l~~~G~~ 32 (278)
T 1spx_A 15 SNGIGRATAVLFAREGAK 32 (278)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CchHHHHHHHHHHHCCCE
Confidence 368999999999999963
No 181
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=20.86 E-value=23 Score=25.06 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=19.0
Q ss_pred CCCchHHHHhHHhcCCCccceeeecCCCC
Q psy6808 51 AGVGDVLGKRLESKGFDKSINPQMFPDPD 79 (132)
Q Consensus 51 AGIGpvLGkrLeekGFDKAYvVl~f~~~~ 79 (132)
-|||..++++|.++|++ +++.--+++
T Consensus 17 ~giG~~ia~~l~~~G~~---V~~~~r~~~ 42 (250)
T 2fwm_X 17 KGIGYATALAFVEAGAK---VTGFDQAFT 42 (250)
T ss_dssp SHHHHHHHHHHHHTTCE---EEEEESCCC
T ss_pred cHHHHHHHHHHHHCCCE---EEEEeCchh
Confidence 58999999999999963 444434443
No 182
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=20.85 E-value=31 Score=24.68 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=19.7
Q ss_pred CCccccCCCchHHHHhHHhcCCCcc
Q psy6808 45 KPVTELAGVGDVLGKRLESKGFDKS 69 (132)
Q Consensus 45 K~Vt~LAGIGpvLGkrLeekGFDKA 69 (132)
..+..-.=+|..+|+|+.++|.+++
T Consensus 69 ~n~~AA~~vG~llA~Ral~~GI~~v 93 (120)
T 1ovy_A 69 NNIEAAKKVGELVAKRALEKGIKQV 93 (120)
T ss_dssp TSHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CcHHHHHHHHHHHHHHHHHCCCCEE
Confidence 3445555699999999999999874
No 183
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=20.84 E-value=23 Score=25.15 Aligned_cols=16 Identities=19% Similarity=0.563 Sum_probs=14.9
Q ss_pred CCCchHHHHhHHhcCC
Q psy6808 51 AGVGDVLGKRLESKGF 66 (132)
Q Consensus 51 AGIGpvLGkrLeekGF 66 (132)
-|||..++++|.++|+
T Consensus 16 ~gIG~~ia~~l~~~G~ 31 (256)
T 2d1y_A 16 RGIGRAIAQAFAREGA 31 (256)
T ss_dssp SHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHCCC
Confidence 5899999999999996
No 184
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=20.83 E-value=23 Score=24.63 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.7
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 21 sggiG~~~a~~l~~~G~~ 38 (265)
T 2o23_A 21 ASGLGLATAERLVGQGAS 38 (265)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CChHHHHHHHHHHHCCCE
Confidence 368999999999999964
No 185
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=20.83 E-value=23 Score=25.76 Aligned_cols=18 Identities=22% Similarity=0.580 Sum_probs=15.7
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|..
T Consensus 33 s~GIG~aia~~la~~G~~ 50 (279)
T 3sju_A 33 SSGIGLAVARTLAARGIA 50 (279)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHCCCE
Confidence 368999999999999963
No 186
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=20.78 E-value=23 Score=25.84 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=15.8
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|.+
T Consensus 40 s~GIG~aia~~la~~G~~ 57 (273)
T 3uf0_A 40 GSGIGRAIAHGYARAGAH 57 (273)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHHCCCE
Confidence 458999999999999973
No 187
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=20.77 E-value=23 Score=25.37 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=18.8
Q ss_pred cCCCchHHHHhHHhcCCCccceeeecCC
Q psy6808 50 LAGVGDVLGKRLESKGFDKSINPQMFPD 77 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFDKAYvVl~f~~ 77 (132)
--|||..++++|.++|+. +++.--+
T Consensus 17 s~GIG~aia~~l~~~G~~---V~~~~r~ 41 (265)
T 3lf2_A 17 SSGIGLATVELLLEAGAA---VAFCARD 41 (265)
T ss_dssp SSHHHHHHHHHHHHTTCE---EEEEESC
T ss_pred CChHHHHHHHHHHHCCCE---EEEEeCC
Confidence 368999999999999963 4444333
No 188
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=20.74 E-value=21 Score=25.94 Aligned_cols=18 Identities=39% Similarity=0.765 Sum_probs=15.8
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|+.
T Consensus 36 s~GIG~aia~~la~~G~~ 53 (267)
T 3u5t_A 36 SRGIGAAIAARLASDGFT 53 (267)
T ss_dssp SSHHHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHHHCCCE
Confidence 468999999999999963
No 189
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=20.69 E-value=23 Score=25.05 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=15.3
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 16 s~gIG~~ia~~l~~~G~ 32 (263)
T 3ai3_A 16 SSGIGLAIAEGFAKEGA 32 (263)
T ss_dssp SSHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHCCC
Confidence 35899999999999996
No 190
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=20.68 E-value=23 Score=25.19 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=15.7
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 28 s~gIG~~~a~~l~~~G~~ 45 (249)
T 1o5i_A 28 SRGIGRAVADVLSQEGAE 45 (249)
T ss_dssp SSHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHCCCE
Confidence 368999999999999963
No 191
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=20.67 E-value=23 Score=25.99 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=19.3
Q ss_pred cCCCchHHHHhHHhcCCCccceeeecCCC
Q psy6808 50 LAGVGDVLGKRLESKGFDKSINPQMFPDP 78 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFDKAYvVl~f~~~ 78 (132)
--|||..++++|.++|++ +++.--++
T Consensus 56 s~GIG~aia~~la~~G~~---V~~~~r~~ 81 (291)
T 3ijr_A 56 DSGIGRAVSIAFAKEGAN---IAIAYLDE 81 (291)
T ss_dssp TSHHHHHHHHHHHHTTCE---EEEEESSC
T ss_pred CcHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence 368999999999999963 44444443
No 192
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=20.62 E-value=23 Score=26.02 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=15.4
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 59 ~GIG~aia~~la~~G~~ 75 (294)
T 3r3s_A 59 SGIGRAAAIAYAREGAD 75 (294)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 193
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=20.60 E-value=43 Score=25.03 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=15.3
Q ss_pred CCccccCCCchHHHHhHHh
Q psy6808 45 KPVTELAGVGDVLGKRLES 63 (132)
Q Consensus 45 K~Vt~LAGIGpvLGkrLee 63 (132)
+..+.+||||+..++|+..
T Consensus 107 ~~L~~vpGIG~K~A~rI~~ 125 (191)
T 1ixr_A 107 RLLTSASGVGRRLAERIAL 125 (191)
T ss_dssp HHHTTSTTCCHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHH
Confidence 3457889999999999864
No 194
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=20.59 E-value=34 Score=24.34 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=19.6
Q ss_pred CccccCCCchHHHHhHHhcCCCcc
Q psy6808 46 PVTELAGVGDVLGKRLESKGFDKS 69 (132)
Q Consensus 46 ~Vt~LAGIGpvLGkrLeekGFDKA 69 (132)
.+..-.=+|..+|+|+.++|.+++
T Consensus 62 n~~AA~~vG~llA~ra~~~GI~~v 85 (112)
T 3v2d_S 62 KTEVARQVGRALAEKALALGIKQV 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCBC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEE
Confidence 445556699999999999999874
No 195
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=20.58 E-value=24 Score=24.23 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=15.5
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|+.
T Consensus 16 sggiG~~la~~l~~~G~~ 33 (248)
T 2pnf_A 16 TRGIGRAIAEKLASAGST 33 (248)
T ss_dssp SSHHHHHHHHHHHHTTCE
T ss_pred CchHHHHHHHHHHHCCCE
Confidence 358999999999999963
No 196
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=20.57 E-value=23 Score=25.45 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=15.7
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 20 s~gIG~aia~~la~~G~~ 37 (286)
T 3uve_A 20 ARGQGRSHAVRLAQEGAD 37 (286)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CchHHHHHHHHHHHCCCe
Confidence 358999999999999963
No 197
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=20.53 E-value=24 Score=25.07 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.6
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|++
T Consensus 18 s~giG~~ia~~l~~~G~~ 35 (260)
T 2ae2_A 18 SRGIGYGIVEELASLGAS 35 (260)
T ss_dssp SSHHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHHHHHCCCE
Confidence 358999999999999963
No 198
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=20.53 E-value=24 Score=25.52 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=15.3
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 37 s~gIG~aia~~l~~~G~ 53 (260)
T 3un1_A 37 SQGIGAGLVRAYRDRNY 53 (260)
T ss_dssp SSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHCCC
Confidence 36899999999999996
No 199
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=20.53 E-value=24 Score=25.41 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=15.8
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|+.
T Consensus 20 s~GIG~a~a~~la~~G~~ 37 (277)
T 3tsc_A 20 ARGQGRAHAVRMAAEGAD 37 (277)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred ccHHHHHHHHHHHHcCCE
Confidence 368999999999999973
No 200
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=20.53 E-value=24 Score=25.37 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.8
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|.+
T Consensus 19 s~gIG~a~a~~l~~~G~~ 36 (281)
T 3s55_A 19 ARGMGRSHAVALAEAGAD 36 (281)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CchHHHHHHHHHHHCCCe
Confidence 468999999999999963
No 201
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=20.52 E-value=24 Score=25.19 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=16.3
Q ss_pred ccCCCchHHHHhHHhcCCC
Q psy6808 49 ELAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 49 ~LAGIGpvLGkrLeekGFD 67 (132)
.--|||..++++|.++|+.
T Consensus 37 as~gIG~~la~~l~~~G~~ 55 (262)
T 3rkr_A 37 ASRGIGAAIARKLGSLGAR 55 (262)
T ss_dssp TTSHHHHHHHHHHHHTTCE
T ss_pred CCChHHHHHHHHHHHCCCE
Confidence 4478999999999999963
No 202
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}
Probab=20.51 E-value=22 Score=24.33 Aligned_cols=16 Identities=38% Similarity=0.827 Sum_probs=14.7
Q ss_pred CCCchHHHHhHHhcCC
Q psy6808 51 AGVGDVLGKRLESKGF 66 (132)
Q Consensus 51 AGIGpvLGkrLeekGF 66 (132)
-|||..++++|.++|+
T Consensus 11 ggiG~~~a~~l~~~G~ 26 (245)
T 2ph3_A 11 RGIGRAIALRLAEDGF 26 (245)
T ss_dssp SHHHHHHHHHHHTTTC
T ss_pred chHHHHHHHHHHHCCC
Confidence 5899999999999995
No 203
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=20.49 E-value=24 Score=24.04 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=14.9
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 11 g~iG~~l~~~L~~~g~~ 27 (255)
T 2dkn_A 11 SGIGAALKELLARAGHT 27 (255)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHhCCCE
Confidence 48999999999999963
No 204
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=20.47 E-value=24 Score=25.81 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=15.9
Q ss_pred ccCCCchHHHHhHHhcCC
Q psy6808 49 ELAGVGDVLGKRLESKGF 66 (132)
Q Consensus 49 ~LAGIGpvLGkrLeekGF 66 (132)
.--|||..++++|.++|+
T Consensus 33 as~GIG~~ia~~la~~G~ 50 (281)
T 3v2h_A 33 STSGIGLAIARTLAKAGA 50 (281)
T ss_dssp CSSHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHCCC
Confidence 346899999999999996
No 205
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=20.41 E-value=24 Score=25.13 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=15.3
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 15 ~gIG~~ia~~l~~~G~~ 31 (254)
T 1hdc_A 15 RGLGAEAARQAVAAGAR 31 (254)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 206
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Probab=20.41 E-value=24 Score=25.04 Aligned_cols=17 Identities=29% Similarity=0.560 Sum_probs=15.3
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|.+
T Consensus 14 ~gIG~~ia~~l~~~G~~ 30 (260)
T 1x1t_A 14 SGIGLGIATALAAQGAD 30 (260)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHcCCE
Confidence 58999999999999963
No 207
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=20.38 E-value=24 Score=25.73 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=15.4
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|.
T Consensus 37 s~GIG~aia~~la~~G~ 53 (270)
T 3ftp_A 37 SRGIGRAIALELARRGA 53 (270)
T ss_dssp SSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHCCC
Confidence 46899999999999997
No 208
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}
Probab=20.38 E-value=24 Score=25.04 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=15.2
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 14 s~gIG~~ia~~l~~~G~ 30 (260)
T 2qq5_A 14 SRGIGRGIALQLCKAGA 30 (260)
T ss_dssp TSHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHCCC
Confidence 35899999999999996
No 209
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=20.25 E-value=87 Score=24.09 Aligned_cols=22 Identities=27% Similarity=0.696 Sum_probs=17.7
Q ss_pred Ccccc----CC-CchHHHHhHHhcCCC
Q psy6808 46 PVTEL----AG-VGDVLGKRLESKGFD 67 (132)
Q Consensus 46 ~Vt~L----AG-IGpvLGkrLeekGFD 67 (132)
+|+.+ .| ||..+++.|.++|.+
T Consensus 19 pVR~ItN~SSG~mG~aiA~~~~~~Ga~ 45 (232)
T 2gk4_A 19 SVRSITNHSTGHLGKIITETLLSAGYE 45 (232)
T ss_dssp SSEEEEECCCCHHHHHHHHHHHHTTCE
T ss_pred ceeeccCCCCCHHHHHHHHHHHHCCCE
Confidence 55555 46 999999999999963
No 210
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=20.23 E-value=24 Score=25.45 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=15.3
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 21 ~gIG~aia~~l~~~G~~ 37 (271)
T 3tzq_B 21 GGIGLETSRVLARAGAR 37 (271)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 68999999999999963
No 211
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=20.21 E-value=24 Score=25.13 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.3
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 17 ~gIG~~ia~~l~~~G~~ 33 (262)
T 1zem_A 17 GNIGLATALRLAEEGTA 33 (262)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999964
No 212
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=20.20 E-value=24 Score=25.59 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=15.8
Q ss_pred cCCCchHHHHhHHhcCCC
Q psy6808 50 LAGVGDVLGKRLESKGFD 67 (132)
Q Consensus 50 LAGIGpvLGkrLeekGFD 67 (132)
--|||..++++|.++|..
T Consensus 23 s~GIG~aia~~l~~~G~~ 40 (269)
T 3vtz_A 23 SSGIGLAVVDALVRYGAK 40 (269)
T ss_dssp TSHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHCCCE
Confidence 368999999999999964
No 213
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=20.16 E-value=24 Score=24.28 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=15.3
Q ss_pred CCCchHHHHhHHhcCCC
Q psy6808 51 AGVGDVLGKRLESKGFD 67 (132)
Q Consensus 51 AGIGpvLGkrLeekGFD 67 (132)
-|||..++++|.++|++
T Consensus 17 ggiG~~~a~~l~~~G~~ 33 (244)
T 3d3w_A 17 KGIGRGTVQALHATGAR 33 (244)
T ss_dssp SHHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHHHCCCE
Confidence 58999999999999963
No 214
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=20.06 E-value=24 Score=25.40 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=15.3
Q ss_pred cCCCchHHHHhHHhcCC
Q psy6808 50 LAGVGDVLGKRLESKGF 66 (132)
Q Consensus 50 LAGIGpvLGkrLeekGF 66 (132)
--|||..++++|.++|+
T Consensus 17 s~gIG~~ia~~l~~~G~ 33 (264)
T 2dtx_A 17 SMGIGRAIAERFVDEGS 33 (264)
T ss_dssp SSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHCCC
Confidence 35899999999999996
No 215
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=20.03 E-value=25 Score=24.91 Aligned_cols=16 Identities=38% Similarity=0.810 Sum_probs=14.8
Q ss_pred CCCchHHHHhHHhcCC
Q psy6808 51 AGVGDVLGKRLESKGF 66 (132)
Q Consensus 51 AGIGpvLGkrLeekGF 66 (132)
-|||..++++|.++|+
T Consensus 12 ~gIG~~ia~~l~~~G~ 27 (256)
T 1geg_A 12 QGIGKAIALRLVKDGF 27 (256)
T ss_dssp SHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHCCC
Confidence 5899999999999996
Done!