RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6808
         (132 letters)



>d1ci4a_ a.60.5.1 (A:) Barrier-to-autointegration factor, BAF
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 89

 Score = 88.2 bits (219), Expect = 1e-24
 Identities = 30/41 (73%), Positives = 38/41 (92%)

Query: 28 MSTSQKHQNFVSEPMGEKPVTELAGVGDVLGKRLESKGFDK 68
          M+TSQKH++FV+EPMGEKPV  LAG+G+VLGK+LE +GFDK
Sbjct: 1  MTTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDK 41


>d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 333

 Score = 28.6 bits (63), Expect = 0.20
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 10/56 (17%)

Query: 20  SPTQELAKMSTSQKHQNF----------VSEPMGEKPVTELAGVGDVLGKRLESKG 65
           +P   LAK+ + +   N           V + + + P+ +++G+G V  K L++ G
Sbjct: 240 APNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLKALG 295


>d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 209

 Score = 27.9 bits (61), Expect = 0.36
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 42  MGEKPVTELAGVGDVLGKRLESKG 65
           + E  + E+ G+G VL +RL   G
Sbjct: 180 LNELDIDEIPGIGSVLARRLNELG 203


>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus
          halodurans [TaxId: 86665]}
          Length = 224

 Score = 26.8 bits (59), Expect = 0.81
 Identities = 7/31 (22%), Positives = 15/31 (48%)

Query: 12 TVHFWPFTSPTQELAKMSTSQKHQNFVSEPM 42
          TV   PF   + + A+++ +   +  V  P+
Sbjct: 29 TVAVMPFLEHSTKQAEIAQAAGLEVIVHMPL 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.422 

Gapped
Lambda     K      H
   0.267   0.0428    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 522,555
Number of extensions: 22364
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 11
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.0 bits)