BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6810
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94516|AT5F1_DROME ATP synthase subunit b, mitochondrial OS=Drosophila melanogaster
GN=ATPsyn-b PE=2 SV=2
Length = 243
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 77/108 (71%)
Query: 60 KLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQA 119
+L L AIE E Q R+ +L EAK+ENI +QLEA FRERA+ Y +VK RL+YQ
Sbjct: 132 ELKVLSDAIEAEKKEQWRADGALLLMEAKKENIALQLEAAFRERAMNVYSEVKRRLDYQV 191
Query: 120 ALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAAR 167
++RR+SQKHMV+W+ ++VL SI+P Q+K+++ KCI+DL ALA R
Sbjct: 192 ECRHVERRLSQKHMVNWITTNVLASISPQQEKETLNKCIADLSALALR 239
>sp|P24539|AT5F1_HUMAN ATP synthase subunit b, mitochondrial OS=Homo sapiens GN=ATP5F1
PE=1 SV=2
Length = 256
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 23/187 (12%)
Query: 5 FVMQHGKFDTIGPVSLGEPIWVSDMAK-----CAQVMNRSVVLTWVMYQSHRAGKI---- 55
F + K GP LG + + ++K A+ VL ++Y + G
Sbjct: 64 FQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPFVADF 123
Query: 56 --RTND-KLASL-----------KGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFR 101
+ N+ KLA L + AI+ E Q + + L++ +R NI M LE +R
Sbjct: 124 ADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEVTYR 183
Query: 102 ERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDL 161
ER Y++VKNRL+Y +++++ RR Q+HM++WV HV++SI+ Q+K++I KCI+DL
Sbjct: 184 ERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCIADL 243
Query: 162 KALAARA 168
K LA +A
Sbjct: 244 KLLAKKA 250
>sp|Q9CQQ7|AT5F1_MOUSE ATP synthase subunit b, mitochondrial OS=Mus musculus GN=Atp5f1
PE=1 SV=1
Length = 256
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 71/105 (67%)
Query: 64 LKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALES 123
++ AI+ E Q + + L++ +R NI + LE +RER AY++VKNRL+Y ++++
Sbjct: 146 IQDAIDMEKAQQALVQKRHYLFDVQRNNIALALEVTYRERLHKAYKEVKNRLDYHISVQN 205
Query: 124 IQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
+ RR ++HM+ WV HV+KSI+ Q+K++I KCI DLK LA +A
Sbjct: 206 MMRRKEEEHMIDWVEKHVVKSISVQQEKETIAKCIEDLKLLAKKA 250
>sp|Q5RFH9|AT5F1_PONAB ATP synthase subunit b, mitochondrial OS=Pongo abelii GN=ATP5F1
PE=2 SV=1
Length = 256
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 71/105 (67%)
Query: 64 LKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALES 123
++ AI+ E Q + + L++ +R NI M LE +RER Y++VKNRL+Y +++
Sbjct: 146 IQNAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLYRVYKEVKNRLDYHIYVQN 205
Query: 124 IQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
+ R+ Q+HMV+WV HV++SI+ Q+K++I KCI+DLK LA +A
Sbjct: 206 MMRQKEQEHMVNWVEKHVVQSISTQQEKETIAKCIADLKLLAKKA 250
>sp|P19511|AT5F1_RAT ATP synthase subunit b, mitochondrial OS=Rattus norvegicus
GN=Atp5f1 PE=1 SV=1
Length = 256
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 69/105 (65%)
Query: 64 LKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALES 123
++ AI E Q + + L++ +R NI + LE +RER AY++VKNRL+Y +++
Sbjct: 146 IQDAINREKAQQALVQKRHYLFDVQRNNIALALEVTYRERLHKAYKEVKNRLDYHISVQD 205
Query: 124 IQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
+ RR +HM++WV HV++SI+ Q+K++I KCI DLK LA +A
Sbjct: 206 MMRRKEGEHMINWVEKHVIQSISAQQEKETIAKCIGDLKMLAKKA 250
>sp|P13619|AT5F1_BOVIN ATP synthase subunit b, mitochondrial OS=Bos taurus GN=ATP5F1 PE=1
SV=2
Length = 256
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 71/105 (67%)
Query: 64 LKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALES 123
++ AI+ E Q + + L++ +R NI M LE +RER Y++VKNRL+Y ++++
Sbjct: 146 IQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQN 205
Query: 124 IQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
+ R+ Q+HM++WV V++SI+ Q+K++I KCI+DLK L+ +A
Sbjct: 206 MMRQKEQEHMINWVEKRVVQSISAQQEKETIAKCIADLKLLSKKA 250
>sp|Q06277|IBPA_HAES2 Adenosine monophosphate-protein transferase and cysteine protease
IbpA OS=Haemophilus somnus (strain 2336) GN=ibpA PE=1
SV=2
Length = 4095
Score = 33.1 bits (74), Expect = 0.83, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 12/83 (14%)
Query: 54 KIRTNDKLASLKGAIENEL---WNQERSKAQ----AVLYEAKRENIQMQ--LEAVFRERA 104
++ T D+ +L ++++L +N+ + KAQ A +AK +N Q+Q LE ++E
Sbjct: 1104 RLETRDRFDTLPSEVQDKLRQKFNEYKEKAQQKRQAEALQAKTKNEQLQSDLETGYKEE- 1162
Query: 105 LFAYQQVKNRLEYQAALESIQRR 127
+Q KN LE QA L+ + ++
Sbjct: 1163 --EKRQAKNDLEKQAELQQLDQQ 1183
>sp|P0C500|RPOA_ORYSJ DNA-directed RNA polymerase subunit alpha OS=Oryza sativa subsp.
japonica GN=rpoA PE=3 SV=1
Length = 337
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 71 ELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQ 130
E+W + LYEA R I + L + E +Q+ KNR + + L S Q+R++
Sbjct: 202 EIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR--FTSPLLSFQKRLTN 259
>sp|P0C499|RPOA_ORYSI DNA-directed RNA polymerase subunit alpha OS=Oryza sativa subsp.
indica GN=rpoA PE=3 SV=1
Length = 337
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 71 ELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQ 130
E+W + LYEA R I + L + E +Q+ KNR + + L S Q+R++
Sbjct: 202 EIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR--FTSPLLSFQKRLTN 259
>sp|P0C498|RPOA_ORYSA DNA-directed RNA polymerase subunit alpha OS=Oryza sativa GN=rpoA
PE=3 SV=1
Length = 337
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 71 ELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQ 130
E+W + LYEA R I + L + E +Q+ KNR + + L S Q+R++
Sbjct: 202 EIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR--FTSPLLSFQKRLTN 259
>sp|Q6ENE2|RPOA_ORYNI DNA-directed RNA polymerase subunit alpha OS=Oryza nivara GN=rpoA
PE=3 SV=1
Length = 337
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 71 ELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQ 130
E+W + LYEA R I + L + E +Q+ KNR + + L S Q+R++
Sbjct: 202 EIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQENKNR--FTSPLLSFQKRLTN 259
>sp|Q5HPJ3|SBCC_STAEQ Nuclease SbcCD subunit C OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=sbcC PE=3 SV=1
Length = 1009
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 37/74 (50%)
Query: 56 RTNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRL 115
+T DKL L ++ E+ +Q+ + N+++++E ++ +Y QVK+
Sbjct: 679 KTKDKLNELNNKLKIEMNDQKHLTENLTQTSKEINNLELKMEKEMQQLGFESYDQVKSAA 738
Query: 116 EYQAALESIQRRIS 129
+ A + I+R I+
Sbjct: 739 DLSAQKDEIEREIN 752
>sp|Q8CPC5|SBCC_STAES Nuclease SbcCD subunit C OS=Staphylococcus epidermidis (strain ATCC
12228) GN=sbcC PE=3 SV=1
Length = 1009
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 37/74 (50%)
Query: 56 RTNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRL 115
+T DKL L ++ E+ +Q+ + N+++++E ++ +Y QVK+
Sbjct: 679 KTKDKLNELNNKLKIEMNDQKHLTENLTQTSKEINNLELKMEKEMQQLGFESYDQVKSAA 738
Query: 116 EYQAALESIQRRIS 129
+ A + I+R I+
Sbjct: 739 DLSAQKDEIEREIN 752
>sp|A9IJ29|RL10_BORPD 50S ribosomal protein L10 OS=Bordetella petrii (strain ATCC BAA-461
/ DSM 12804 / CCUG 43448) GN=rplJ PE=3 SV=1
Length = 174
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 52 AGKIRTNDKLASLKGAIENELWNQERSKAQAVL 84
AG ++NDKL G++ N L NQE KA A +
Sbjct: 96 AGFAKSNDKLVIKAGSLPNNLLNQEGVKALATM 128
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.128 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,664,157
Number of Sequences: 539616
Number of extensions: 1651859
Number of successful extensions: 6173
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 6146
Number of HSP's gapped (non-prelim): 64
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)