Query psy6810
Match_columns 168
No_of_seqs 130 out of 173
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 18:59:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3976|consensus 100.0 1.5E-53 3.2E-58 358.5 18.3 162 3-164 61-246 (247)
2 PF05405 Mt_ATP-synt_B: Mitoch 100.0 3.6E-42 7.7E-47 272.1 10.7 139 24-162 1-163 (163)
3 KOG3976|consensus 91.4 6.7 0.00015 34.1 12.5 29 139-167 212-240 (247)
4 PRK13460 F0F1 ATP synthase sub 91.3 6.4 0.00014 31.4 17.1 77 89-165 88-172 (173)
5 PRK13428 F0F1 ATP synthase sub 91.2 12 0.00027 34.4 17.7 77 90-166 74-159 (445)
6 PRK14472 F0F1 ATP synthase sub 90.8 7.2 0.00016 31.1 18.1 73 91-163 92-172 (175)
7 TIGR03321 alt_F1F0_F0_B altern 90.0 11 0.00023 31.8 17.6 76 90-165 78-161 (246)
8 CHL00019 atpF ATP synthase CF0 89.0 11 0.00023 30.4 17.7 75 91-165 98-180 (184)
9 PRK06231 F0F1 ATP synthase sub 88.9 12 0.00026 31.0 18.0 63 101-163 132-202 (205)
10 PRK13453 F0F1 ATP synthase sub 82.9 22 0.00048 28.3 16.9 30 133-162 141-171 (173)
11 PRK13455 F0F1 ATP synthase sub 80.7 28 0.0006 27.9 18.5 74 91-164 101-182 (184)
12 PF06212 GRIM-19: GRIM-19 prot 78.9 28 0.00061 27.3 9.2 21 8-28 23-43 (130)
13 PRK14473 F0F1 ATP synthase sub 75.7 36 0.00079 26.6 17.2 75 89-163 80-162 (164)
14 KOG3300|consensus 73.8 29 0.00064 27.8 8.1 71 8-98 27-100 (146)
15 PRK07352 F0F1 ATP synthase sub 72.4 47 0.001 26.3 17.5 109 54-162 49-172 (174)
16 PRK08475 F0F1 ATP synthase sub 68.8 57 0.0012 25.9 15.5 53 90-142 95-147 (167)
17 PF09878 DUF2105: Predicted me 65.5 3.9 8.5E-05 34.6 1.7 29 12-40 128-159 (212)
18 PRK13461 F0F1 ATP synthase sub 63.9 67 0.0015 24.9 17.5 108 54-161 35-157 (159)
19 PRK05759 F0F1 ATP synthase sub 61.8 70 0.0015 24.5 17.3 73 89-161 76-156 (156)
20 PF11262 Tho2: Transcription f 60.2 1.2E+02 0.0025 26.5 10.2 83 54-159 26-111 (298)
21 TIGR01144 ATP_synt_b ATP synth 59.7 75 0.0016 24.1 16.8 30 132-161 117-147 (147)
22 PF07989 Microtub_assoc: Micro 58.4 63 0.0014 22.9 6.8 50 82-131 7-62 (75)
23 KOG4253|consensus 57.7 1.1E+02 0.0024 25.3 9.1 62 73-139 42-105 (175)
24 PRK14474 F0F1 ATP synthase sub 57.2 1.2E+02 0.0026 25.8 17.5 76 90-165 78-161 (250)
25 PRK12729 fliE flagellar hook-b 56.7 90 0.0019 24.6 7.8 56 58-113 56-125 (127)
26 COG1610 Uncharacterized conser 54.4 1.2E+02 0.0025 24.6 10.9 87 76-163 21-113 (148)
27 PRK03907 fliE flagellar hook-b 52.6 96 0.0021 23.2 7.3 53 61-113 29-94 (97)
28 PF08261 Carcinustatin: Carcin 52.6 4.1 8.9E-05 17.7 -0.2 6 16-21 2-7 (8)
29 COG1677 FliE Flagellar hook-ba 50.4 1.1E+02 0.0023 23.1 7.8 55 59-113 35-102 (105)
30 PRK00732 fliE flagellar hook-b 48.7 1.1E+02 0.0025 22.9 7.7 33 81-113 67-99 (102)
31 PRK14471 F0F1 ATP synthase sub 48.3 1.3E+02 0.0028 23.5 17.4 109 54-162 38-162 (164)
32 cd07627 BAR_Vps5p The Bin/Amph 47.4 1.6E+02 0.0034 24.2 9.3 56 70-125 151-206 (216)
33 TIGR03398 plc_access_R phospho 47.3 31 0.00066 27.5 3.8 28 135-162 100-128 (141)
34 COG4036 Predicted membrane pro 46.7 9.6 0.00021 32.1 1.0 26 12-37 130-155 (224)
35 PRK00253 fliE flagellar hook-b 44.9 1.3E+02 0.0028 22.8 6.8 54 60-113 38-105 (108)
36 PRK12728 fliE flagellar hook-b 44.1 1.3E+02 0.0029 22.4 7.7 33 81-113 67-99 (102)
37 PRK13922 rod shape-determining 39.5 1.3E+02 0.0027 25.5 6.7 41 74-114 61-101 (276)
38 PF02049 FliE: Flagellar hook- 36.5 1.6E+02 0.0036 21.3 7.7 33 81-113 61-93 (96)
39 cd07664 BAR_SNX2 The Bin/Amphi 34.1 2.9E+02 0.0063 23.4 9.3 57 67-123 164-220 (234)
40 PRK01482 fliE flagellar hook-b 32.9 2.2E+02 0.0048 21.7 7.7 54 60-113 39-106 (108)
41 PF10883 DUF2681: Protein of u 32.7 2E+02 0.0044 21.1 7.0 31 61-91 32-62 (87)
42 PF13062 DUF3924: Protein of u 32.5 26 0.00056 24.0 1.2 25 6-33 21-45 (62)
43 TIGR01167 LPXTG_anchor LPXTG-m 32.3 45 0.00097 19.2 2.1 15 10-24 3-18 (34)
44 PF12116 SpoIIID: Stage III sp 30.6 95 0.0021 22.8 3.9 42 79-120 23-64 (82)
45 TIGR00205 fliE flagellar hook- 30.4 2.4E+02 0.0052 21.3 7.5 55 59-113 38-106 (108)
46 KOG1488|consensus 30.0 1.2E+02 0.0027 28.9 5.6 52 102-164 351-403 (503)
47 PRK01699 fliE flagellar hook-b 28.9 2.5E+02 0.0054 21.0 7.7 35 79-113 62-96 (99)
48 PRK14740 kdbF potassium-transp 27.3 44 0.00096 20.0 1.4 11 19-29 10-20 (29)
49 PF12597 DUF3767: Protein of u 26.8 2.4E+02 0.0053 21.5 5.9 60 12-73 46-107 (118)
50 PRK14872 rod shape-determining 26.7 4.9E+02 0.011 23.6 9.4 32 81-112 56-87 (337)
51 PRK00247 putative inner membra 26.4 5.4E+02 0.012 24.1 12.4 82 13-101 242-339 (429)
52 PRK14752 delta-hemolysin; Prov 26.4 51 0.0011 21.2 1.7 12 132-143 29-40 (44)
53 KOG0018|consensus 26.2 6.6E+02 0.014 26.6 10.2 72 90-164 771-843 (1141)
54 PF06210 DUF1003: Protein of u 25.6 3E+02 0.0064 20.8 7.5 52 91-142 39-97 (108)
55 PRK00790 fliE flagellar hook-b 25.2 3.1E+02 0.0067 20.8 7.6 35 79-113 72-106 (109)
56 PF02387 IncFII_repA: IncFII R 25.1 4.8E+02 0.01 23.0 9.5 45 123-167 232-280 (281)
57 PF05372 Delta_lysin: Delta ly 25.1 62 0.0013 18.6 1.7 12 132-143 11-22 (25)
58 PF12213 Dpoe2NT: DNA polymera 24.4 80 0.0017 22.3 2.6 34 127-160 37-72 (73)
59 COG2891 MreD Cell shape-determ 23.9 50 0.0011 26.9 1.6 33 5-39 66-98 (167)
60 KOG0810|consensus 23.6 5.2E+02 0.011 22.9 11.3 46 100-145 190-247 (297)
61 TIGR00219 mreC rod shape-deter 23.1 3.8E+02 0.0083 23.2 7.1 31 76-106 60-91 (283)
62 KOG4304|consensus 23.1 72 0.0016 27.6 2.5 28 139-166 32-59 (250)
63 PF07769 PsiF_repeat: psiF rep 21.9 2E+02 0.0043 17.9 3.7 30 129-158 5-34 (35)
64 PF08651 DASH_Duo1: DASH compl 21.8 2.3E+02 0.0051 20.1 4.6 40 123-162 2-42 (78)
65 KOG3461|consensus 21.5 54 0.0012 26.0 1.3 36 5-40 29-65 (132)
66 PRK12586 putative monovalent c 20.7 1.4E+02 0.003 24.0 3.5 23 10-32 44-66 (145)
67 KOG3915|consensus 20.2 8.1E+02 0.018 23.9 9.6 9 13-21 487-495 (641)
No 1
>KOG3976|consensus
Probab=100.00 E-value=1.5e-53 Score=358.46 Aligned_cols=162 Identities=22% Similarity=0.346 Sum_probs=153.9
Q ss_pred chhhccccccccchhhhhhHHHHHHHHhhceeeeechHHH-----HHHHHHHHHhh------------------hhhhHH
Q psy6810 3 SRFVMQHGKFDTIGPVSLGEPIWVSDMAKCAQVMNRSVVL-----TWVMYQSHRAG------------------KIRTND 59 (168)
Q Consensus 3 ~~f~~~~~KTG~tGp~~lg~gl~~y~iSkEiyVin~Eti~-----~~~~y~~~k~g------------------n~~R~~ 59 (168)
+||+|||+|||+||||++|+||.+|+|||||||||+||+. ++.+|+++++| +++|++
T Consensus 61 ~~f~~l~~ktGVtGpy~~~~gli~yaiSKEiyVie~e~~~~~s~lgl~~~~~k~~g~ai~~~adk~~~k~~~~~~~arq~ 140 (247)
T KOG3976|consen 61 EWFTFLYTKTGVTGPYLFGAGLIAYAISKELYVIEDESISTLSFLGLTGLAIKKLGPAIADWADKLIEKILSQLEEARQA 140 (247)
T ss_pred hhhhhhhccccccccchhhHHHHHHHHhcceEEEeecchhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999855 44567778866 899999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6810 60 KLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVS 139 (168)
Q Consensus 60 ~i~~vk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~mv~wVi~ 139 (168)
|+++++|+||.+++.|+..+.++.|||++|||++||+|++||||++++++|+|+||||||++|+++||.||+||++.|.+
T Consensus 141 ~ik~i~d~id~~~sqq~~~~~~~~lfd~~keni~l~lE~~yre~~~~v~~E~K~~lDy~v~~e~~~rr~eqe~l~ksI~~ 220 (247)
T KOG3976|consen 141 HIKAISDAIDTEKSQQALASKTEYLFDVSKENIALQLEATYREQLVRVAKEVKRRLDYWVETEASKRRLEQEQLLKSINS 220 (247)
T ss_pred HHHHHHHHHhhHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcC-ChHHHHHHHHHHHHHHHHH
Q psy6810 140 HVLKSI-TPDQDKQSIKKCISDLKAL 164 (168)
Q Consensus 140 ~V~ksI-~pk~ek~~L~qcIadle~L 164 (168)
.|.|+. ++++++..|+++|++++.+
T Consensus 221 ~veke~~~k~fqd~~lq~~~~q~~~~ 246 (247)
T KOG3976|consen 221 RVEKETSNKKFQDKVLQASIQQIEGL 246 (247)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhhcc
Confidence 999988 9999999999999999875
No 2
>PF05405 Mt_ATP-synt_B: Mitochondrial ATP synthase B chain precursor (ATP-synt_B); InterPro: IPR008688 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in mitochondria of eukaryotes (metazoa, viridiplantae (plants and green algae), jakobidae and the malawimonadidae). The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_X 2CLY_D.
Probab=100.00 E-value=3.6e-42 Score=272.06 Aligned_cols=139 Identities=36% Similarity=0.577 Sum_probs=105.3
Q ss_pred HHHHHHhhceeeeechHHHHH-----HHHHHHHhh------------------hhhhHHHHHHHHHHHHHHhhhhHHHHH
Q psy6810 24 IWVSDMAKCAQVMNRSVVLTW-----VMYQSHRAG------------------KIRTNDKLASLKGAIENELWNQERSKA 80 (168)
Q Consensus 24 l~~y~iSkEiyVin~Eti~~~-----~~y~~~k~g------------------n~~R~~~i~~vk~~Ie~~k~~q~~~~~ 80 (168)
|++|++||||||+||||++++ ++++.+++| |++|+.|+++++++|+++++++|++++
T Consensus 1 l~~~l~Skei~I~neE~~v~~~f~~f~~~~~k~~g~~i~~~ld~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~ 80 (163)
T PF05405_consen 1 LFAYLISKEIYIYNEETLVALCFIIFIIFIYKKFGPSIAEWLDERIQKIEDELNQSRNDHIKALKERIEQVKKEQSLVEG 80 (163)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ChhhHhcCeeeEECchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999998744 334445555 899999999999999999999999999
Q ss_pred HHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-ChHHHHHHHHHHHH
Q psy6810 81 QAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKSI-TPDQDKQSIKKCIS 159 (168)
Q Consensus 81 ~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~mv~wVi~~V~ksI-~pk~ek~~L~qcIa 159 (168)
+++||+++|||++|++|++||+|++.+++|+|+||||||++|++.|+.+|+||++||+++|.++| +|+.++++|++||+
T Consensus 81 ~~~l~~~~ke~~~~~~e~~~~~~~~~v~~evk~~Ld~~v~~e~~~r~~~Q~~l~~~v~~~V~~~i~~~k~~~~~l~~~I~ 160 (163)
T PF05405_consen 81 TKMLFEASKENVALQLEAFYREQQAAVAQEVKRRLDYWVEYEQSVRRREQKHLVKWVISKVLKSITPPKFQKQILQQCIA 160 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G-GGSHCCHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 55669999999999
Q ss_pred HHH
Q psy6810 160 DLK 162 (168)
Q Consensus 160 dle 162 (168)
|||
T Consensus 161 ~lk 163 (163)
T PF05405_consen 161 DLK 163 (163)
T ss_dssp HHH
T ss_pred HcC
Confidence 997
No 3
>KOG3976|consensus
Probab=91.42 E-value=6.7 Score=34.06 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=25.2
Q ss_pred HHhhhcCChHHHHHHHHHHHHHHHHHhhh
Q psy6810 139 SHVLKSITPDQDKQSIKKCISDLKALAAR 167 (168)
Q Consensus 139 ~~V~ksI~pk~ek~~L~qcIadle~La~k 167 (168)
++..++|+++++|+++++|++|...+++.
T Consensus 212 e~l~ksI~~~veke~~~k~fqd~~lq~~~ 240 (247)
T KOG3976|consen 212 EQLLKSINSRVEKETSNKKFQDKVLQASI 240 (247)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45678999999999999999999887754
No 4
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=91.28 E-value=6.4 Score=31.36 Aligned_cols=77 Identities=13% Similarity=0.112 Sum_probs=52.4
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HH---HHHHHhhh-cCChHHHHHHHHHHHHH
Q psy6810 89 RENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHM----VS---WVVSHVLK-SITPDQDKQSIKKCISD 160 (168)
Q Consensus 89 kEn~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~m----v~---wVi~~V~k-sI~pk~ek~~L~qcIad 160 (168)
.+++.-+++....+-......|+.+.+++.-.-=...|+....+| ++ -+.+++.+ .+||+.+++++++.|.+
T Consensus 88 i~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ei~~lA~~~a~kil~~~l~~~~~~~lid~~i~~ 167 (173)
T PRK13460 88 VAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEMTITIASKVLEKQLKKEDYKAFIETELAK 167 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 456666677777777778888888888877655555544444433 22 23334444 67999999999999999
Q ss_pred HHHHh
Q psy6810 161 LKALA 165 (168)
Q Consensus 161 le~La 165 (168)
+..++
T Consensus 168 ~~~~~ 172 (173)
T PRK13460 168 LGKLS 172 (173)
T ss_pred ccccC
Confidence 88765
No 5
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=91.16 E-value=12 Score=34.43 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=49.6
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHH---H-hhhcC-ChHHHHHHHHHHHHH
Q psy6810 90 ENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRIS----QKHMVSWVVS---H-VLKSI-TPDQDKQSIKKCISD 160 (168)
Q Consensus 90 En~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~e----Q~~mv~wVi~---~-V~ksI-~pk~ek~~L~qcIad 160 (168)
+++.-+++..+-+-......|+.+.++.+-+--...|+.. +.++++-.+. + +.++| +++.+++++++-|.+
T Consensus 74 ~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~kil~~~l~d~~~~~~lId~~i~~ 153 (445)
T PRK13428 74 EEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGHESVRQAGELVRNHVADPAQQSATVDRFLDE 153 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445555555666666777777777777665555555444 3334333333 3 33478 688889999999999
Q ss_pred HHHHhh
Q psy6810 161 LKALAA 166 (168)
Q Consensus 161 le~La~ 166 (168)
|..+.+
T Consensus 154 l~~~~~ 159 (445)
T PRK13428 154 LDAMAP 159 (445)
T ss_pred hhccCC
Confidence 988764
No 6
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=90.76 E-value=7.2 Score=31.07 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=45.7
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHhhh-cCChHHHHHHHHHHHHHHH
Q psy6810 91 NIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHM-------VSWVVSHVLK-SITPDQDKQSIKKCISDLK 162 (168)
Q Consensus 91 n~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~m-------v~wVi~~V~k-sI~pk~ek~~L~qcIadle 162 (168)
++.-+++....+-...+..|+.+.++.+-.-=...++....++ +--+..++.+ +++++.++.++++.|.+|+
T Consensus 92 ~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA~~~a~kil~~~l~~~~~~~li~~~i~~l~ 171 (175)
T PRK14472 92 EGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLAVKGAEKIIRTSLDADKQKKVVDSMIQDLS 171 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhh
Confidence 3344445555555566667777777776655555555444333 2233344444 5699999999999999987
Q ss_pred H
Q psy6810 163 A 163 (168)
Q Consensus 163 ~ 163 (168)
.
T Consensus 172 ~ 172 (175)
T PRK14472 172 T 172 (175)
T ss_pred h
Confidence 3
No 7
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=89.97 E-value=11 Score=31.81 Aligned_cols=76 Identities=11% Similarity=0.046 Sum_probs=46.4
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHH---HHHHhhh-cCChHHHHHHHHHHHHHH
Q psy6810 90 ENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHM----VSW---VVSHVLK-SITPDQDKQSIKKCISDL 161 (168)
Q Consensus 90 En~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~m----v~w---Vi~~V~k-sI~pk~ek~~L~qcIadl 161 (168)
+++.-+++....+-+..+..|+.+.++.+-.--...++...+.+ ++- +..++.+ .++++.++.++++-|.+|
T Consensus 78 ~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la~~~A~kil~~~~d~~~~~~lid~~i~~l 157 (246)
T TIGR03321 78 TKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLTDLADTDLEERMVDVFVQRL 157 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHh
Confidence 34444555555556666667777777666554444444444333 222 2233333 569999999999999999
Q ss_pred HHHh
Q psy6810 162 KALA 165 (168)
Q Consensus 162 e~La 165 (168)
..|.
T Consensus 158 ~~l~ 161 (246)
T TIGR03321 158 RTLD 161 (246)
T ss_pred hcCC
Confidence 8774
No 8
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=88.98 E-value=11 Score=30.39 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=44.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHH----hhhcCChHHHHHHHHHHHHHHH
Q psy6810 91 NIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHM----VSWVVSH----VLKSITPDQDKQSIKKCISDLK 162 (168)
Q Consensus 91 n~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~m----v~wVi~~----V~ksI~pk~ek~~L~qcIadle 162 (168)
++.-++|...-+-+..+..|+.+.+..+-.-=...++...+.+ ++-.++- +.++|+|+.+++++++-|.+|.
T Consensus 98 ~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~~lav~~A~kil~~~ld~~~~~~lid~~i~~l~ 177 (184)
T CHL00019 98 NGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRAINQVRQQVFQLALQRALGTLNSCLNNELHLRTINANIGLLG 177 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHHHH
Confidence 3333444444444555556666666665555445554444443 3333332 2336799999999999999997
Q ss_pred HHh
Q psy6810 163 ALA 165 (168)
Q Consensus 163 ~La 165 (168)
.+-
T Consensus 178 ~~~ 180 (184)
T CHL00019 178 AMK 180 (184)
T ss_pred hcc
Confidence 664
No 9
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=88.94 E-value=12 Score=30.98 Aligned_cols=63 Identities=21% Similarity=0.184 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHH---HHHHHHhhh-cCChHHHHHHHHHHHHHHHH
Q psy6810 101 RERALFAYQQVKNRLEYQAALESIQRRIS----QKHMV---SWVVSHVLK-SITPDQDKQSIKKCISDLKA 163 (168)
Q Consensus 101 req~~~v~~EvK~rLDy~V~~e~~~R~~e----Q~~mv---~wVi~~V~k-sI~pk~ek~~L~qcIadle~ 163 (168)
-+-......|+.+.+...-+-=...++.. +++++ --+-+++.+ .|+|+.+++.+++.|.+|+.
T Consensus 132 e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~iA~kiL~k~ld~~~~~~lI~~~i~~l~~ 202 (205)
T PRK06231 132 SELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIKKKVDREDDDKLVDEFIRELEA 202 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHccc
Confidence 33344444555555544433333333333 23333 333344444 67999999999999988763
No 10
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=82.87 E-value=22 Score=28.33 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=21.9
Q ss_pred HHHHHHHHhhh-cCChHHHHHHHHHHHHHHH
Q psy6810 133 MVSWVVSHVLK-SITPDQDKQSIKKCISDLK 162 (168)
Q Consensus 133 mv~wVi~~V~k-sI~pk~ek~~L~qcIadle 162 (168)
++--+.+++.+ +|+|+.++.+++..|.++.
T Consensus 141 lA~~~a~kll~~~l~~~~~~~lI~~~i~~~~ 171 (173)
T PRK13453 141 LSVLIASKVLRKEISEQDQKALVDKYLKEAG 171 (173)
T ss_pred HHHHHHHHHHHhHcCHHHHHHHHHHHHHhhC
Confidence 44445555554 6799999999999998764
No 11
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=80.70 E-value=28 Score=27.93 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=41.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHH---Hh-hhcCChHHHHHHHHHHHHHHH
Q psy6810 91 NIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQK----HMVSWVVS---HV-LKSITPDQDKQSIKKCISDLK 162 (168)
Q Consensus 91 n~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~----~mv~wVi~---~V-~ksI~pk~ek~~L~qcIadle 162 (168)
++.-+.+....+.+.....|+.+.++.--.--...|+...+ ++++-.++ ++ .+++||+.++.+++..|.++.
T Consensus 101 ~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~kil~~~l~~~~~~~lid~~i~~l~ 180 (184)
T PRK13455 101 AAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSVAVAAAADVIAKQMTAADANALIDEAIKEVE 180 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 33334455555556666666666655433333333333222 33333332 33 346799999999999999987
Q ss_pred HH
Q psy6810 163 AL 164 (168)
Q Consensus 163 ~L 164 (168)
..
T Consensus 181 ~~ 182 (184)
T PRK13455 181 AR 182 (184)
T ss_pred hh
Confidence 54
No 12
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=78.85 E-value=28 Score=27.30 Aligned_cols=21 Identities=10% Similarity=-0.116 Sum_probs=15.9
Q ss_pred cccccccchhhhhhHHHHHHH
Q psy6810 8 QHGKFDTIGPVSLGEPIWVSD 28 (168)
Q Consensus 8 ~~~KTG~tGp~~lg~gl~~y~ 28 (168)
-.||||.+|..++++++++.+
T Consensus 23 ~~p~rg~sg~~~~~~~~~~~~ 43 (130)
T PF06212_consen 23 NLPKRGPSGWTMFAGGAGIMA 43 (130)
T ss_pred cCCCCCCCHHHHHHHHHHHHH
Confidence 358999999888887765543
No 13
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=75.67 E-value=36 Score=26.60 Aligned_cols=75 Identities=16% Similarity=0.088 Sum_probs=46.3
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HH---HHHHHhhh-cCChHHHHHHHHHHHHH
Q psy6810 89 RENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHM----VS---WVVSHVLK-SITPDQDKQSIKKCISD 160 (168)
Q Consensus 89 kEn~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~m----v~---wVi~~V~k-sI~pk~ek~~L~qcIad 160 (168)
++++.-+.+..+.+-+.....|+.+.++.+-.-=...|+....+| ++ -+..++.. +|||+.++..+++.|.+
T Consensus 80 i~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~~i~~la~~~a~kil~~~l~~~~~~~li~~~i~~ 159 (164)
T PRK14473 80 VAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIADLVTLTASRVLGAELQARGHDALIAESLAA 159 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHh
Confidence 355555666666666677777777766666544444443333332 22 23334333 78999999999999988
Q ss_pred HHH
Q psy6810 161 LKA 163 (168)
Q Consensus 161 le~ 163 (168)
+..
T Consensus 160 ~~~ 162 (164)
T PRK14473 160 LGR 162 (164)
T ss_pred ccc
Confidence 754
No 14
>KOG3300|consensus
Probab=73.81 E-value=29 Score=27.81 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=43.6
Q ss_pred cccccccchhhhhhHHHHHHHHhhceeeeechHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy6810 8 QHGKFDTIGPVSLGEPIWVSDMAKCAQVMNRSVVLTWVMYQSHRAG---KIRTNDKLASLKGAIENELWNQERSKAQAVL 84 (168)
Q Consensus 8 ~~~KTG~tGp~~lg~gl~~y~iSkEiyVin~Eti~~~~~y~~~k~g---n~~R~~~i~~vk~~Ie~~k~~q~~~~~~~~L 84 (168)
--||||.||--+++++..+ +.||.--++ ...|...++.+..++.-.--+|...+ ...
T Consensus 27 ~~pk~~~Sg~t~~aa~~ga------------------tayG~~~~~~~~kk~rr~kiEd~~a~nai~PiL~AErD--r~~ 86 (146)
T KOG3300|consen 27 RIPKTGPSGMTMFAAVSGA------------------TAYGMYQVGQGNKKRRRLKIEDYAARNAILPILQAERD--RRF 86 (146)
T ss_pred cCCccCCCcchhhhHHHHH------------------HHHHHHHHHhchhHHHHHHHHHHHHHHHHhhHHHHHHH--HHH
Confidence 4589999886666654433 334443333 56677777777777776666665544 334
Q ss_pred HHHhhhhHHHhHHH
Q psy6810 85 YEAKRENIQMQLEA 98 (168)
Q Consensus 85 f~~~kEn~~lqlEa 98 (168)
...-|+|...++|.
T Consensus 87 l~~lrkn~eeEaei 100 (146)
T KOG3300|consen 87 LSELRKNLEEEAEI 100 (146)
T ss_pred HHHHHHhHHHHHHH
Confidence 45567777766664
No 15
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=72.39 E-value=47 Score=26.35 Aligned_cols=109 Identities=18% Similarity=0.144 Sum_probs=61.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhh------hhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy6810 54 KIRTNDKLASLKGAIENELWNQERSKA-QAVLYEAKR------ENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQR 126 (168)
Q Consensus 54 n~~R~~~i~~vk~~Ie~~k~~q~~~~~-~~~Lf~~~k------En~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R 126 (168)
++.++...+.+.++-+..++.+....- ...|-++.+ +++.-+.+...-+-+..+..|+.+.++.+-.--...+
T Consensus 49 ~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~ 128 (174)
T PRK07352 49 EERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQ 128 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555443333333322 334444443 3444445555555566677777777777666555555
Q ss_pred HHHHHHHHHHH----HH----HhhhcCChHHHHHHHHHHHHHHH
Q psy6810 127 RISQKHMVSWV----VS----HVLKSITPDQDKQSIKKCISDLK 162 (168)
Q Consensus 127 ~~eQ~~mv~wV----i~----~V~ksI~pk~ek~~L~qcIadle 162 (168)
+...+.+-+.+ ++ -+.++|+|+.++.++++-|.+|.
T Consensus 129 ~~a~~~l~~qi~~la~~~A~kil~~~l~~~~~~~li~~~i~~l~ 172 (174)
T PRK07352 129 ERVIAQLRREAAELAIAKAESQLPGRLDEDAQQRLIDRSIANLG 172 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHhhc
Confidence 55544443333 22 23346799999999999998874
No 16
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=68.83 E-value=57 Score=25.94 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=40.0
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6810 90 ENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVL 142 (168)
Q Consensus 90 En~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~mv~wVi~~V~ 142 (168)
+++.-+++..+.+-......|+++.++.+-+--...|+.....+=+.+++.+-
T Consensus 95 ~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~eii~~~~ 147 (167)
T PRK08475 95 ETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEEVLNELF 147 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777777888889999999988888877777777666666666554
No 17
>PF09878 DUF2105: Predicted membrane protein (DUF2105); InterPro: IPR019212 This entry represents a protein found in various hypothetical archaeal proteins, has no known function.
Probab=65.50 E-value=3.9 Score=34.62 Aligned_cols=29 Identities=3% Similarity=-0.076 Sum_probs=23.7
Q ss_pred cccchhhhhhHHHHHHHHhhc---eeeeechH
Q psy6810 12 FDTIGPVSLGEPIWVSDMAKC---AQVMNRSV 40 (168)
Q Consensus 12 TG~tGp~~lg~gl~~y~iSkE---iyVin~Et 40 (168)
||.||-.+.|+|+.-|++|+. .++..=|.
T Consensus 128 SGFTGGAVaa~GllfY~ls~~~~g~~~~~weg 159 (212)
T PF09878_consen 128 SGFTGGAVAASGLLFYFLSRRVRGLPIFVWEG 159 (212)
T ss_pred cCCccHHHHHhhHHHHHHhhhhcCCcceeeeh
Confidence 899999999999999999985 44444454
No 18
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=63.88 E-value=67 Score=24.95 Aligned_cols=108 Identities=20% Similarity=0.205 Sum_probs=57.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHhh------hhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy6810 54 KIRTNDKLASLKGAIENELWNQERS-KAQAVLYEAKR------ENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQR 126 (168)
Q Consensus 54 n~~R~~~i~~vk~~Ie~~k~~q~~~-~~~~~Lf~~~k------En~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R 126 (168)
+..++...+.+.++-+...+..... +....|-++.+ +++.-+++....+-+...-.|+.+.++.+.+-=...+
T Consensus 35 ~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~ 114 (159)
T PRK13461 35 DSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREK 114 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444554444333332222 22333434443 3444455555555566666666666666654444444
Q ss_pred HHHHHH-------HHHHHHHHhhh-cCChHHHHHHHHHHHHHH
Q psy6810 127 RISQKH-------MVSWVVSHVLK-SITPDQDKQSIKKCISDL 161 (168)
Q Consensus 127 ~~eQ~~-------mv~wVi~~V~k-sI~pk~ek~~L~qcIadl 161 (168)
...... ++--+..++.+ +++|+.+++.+++.|.++
T Consensus 115 ~~a~~~l~~ei~~lA~~~a~kil~~~~~~~~~~~li~~~i~~~ 157 (159)
T PRK13461 115 EKAEYEIKNQAVDLAVLLSSKALEESIDESEHRRLIKDFISKV 157 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHhHc
Confidence 433333 33334445544 669999999999998875
No 19
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=61.84 E-value=70 Score=24.48 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=47.0
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHhhh-cCChHHHHHHHHHHHHH
Q psy6810 89 RENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHM-------VSWVVSHVLK-SITPDQDKQSIKKCISD 160 (168)
Q Consensus 89 kEn~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~m-------v~wVi~~V~k-sI~pk~ek~~L~qcIad 160 (168)
++.+.-+++..+-+-...+..|+++.++..-.--...++...+++ +--+..++.. .++++.+++.++..|.+
T Consensus 76 ~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~k~l~~~~d~~~~~~~i~~~i~~ 155 (156)
T PRK05759 76 IEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVADLAVAGAEKILGRELDAAAQSDLIDKLIAE 155 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHhh
Confidence 355566666677777777777777777766555555544444433 3344445555 56999998899888876
Q ss_pred H
Q psy6810 161 L 161 (168)
Q Consensus 161 l 161 (168)
+
T Consensus 156 ~ 156 (156)
T PRK05759 156 L 156 (156)
T ss_pred C
Confidence 3
No 20
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=60.23 E-value=1.2e+02 Score=26.50 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=57.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy6810 54 KIRTNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHM 133 (168)
Q Consensus 54 n~~R~~~i~~vk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~m 133 (168)
.+..+..++.++..|.. ..+.........++|+....+.+..=+..|.+.-+..+.+=|...
T Consensus 26 ~~~Y~~ei~~L~~~i~~------------------~~~~~~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k 87 (298)
T PF11262_consen 26 KELYDEEIERLEKEISQ------------------MSRATISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEK 87 (298)
T ss_pred HHHHHHHHHHHHHHHHH------------------hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67777888888888877 222233333445667777777777777777777777777777788
Q ss_pred HHHHHHHhhhcCChHHHH---HHHHHHHH
Q psy6810 134 VSWVVSHVLKSITPDQDK---QSIKKCIS 159 (168)
Q Consensus 134 v~wVi~~V~ksI~pk~ek---~~L~qcIa 159 (168)
-.|. .+-+|.... ..|+.||-
T Consensus 88 ~~wf-----~~~~~~~i~~~~~flq~Ci~ 111 (298)
T PF11262_consen 88 DSWF-----SSKDPEKIEAITAFLQHCIL 111 (298)
T ss_pred hhhh-----ccCChhhHHHHHHHHHHHHH
Confidence 8898 444555544 79999984
No 21
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=59.70 E-value=75 Score=24.13 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhh-cCChHHHHHHHHHHHHHH
Q psy6810 132 HMVSWVVSHVLK-SITPDQDKQSIKKCISDL 161 (168)
Q Consensus 132 ~mv~wVi~~V~k-sI~pk~ek~~L~qcIadl 161 (168)
.++--+..++.+ ++||+..+.+++..|.+|
T Consensus 117 ~lA~~~a~kll~~~l~~~~~~~lid~~i~~~ 147 (147)
T TIGR01144 117 DLSVLGAEKIIERNIDKQAQKDLIDKLVAEL 147 (147)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHhhC
Confidence 344455555544 679999989999988764
No 22
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=58.41 E-value=63 Score=22.87 Aligned_cols=50 Identities=26% Similarity=0.450 Sum_probs=35.6
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHH
Q psy6810 82 AVLYEAKRENIQMQLEAVFRERALFAYQQ------VKNRLEYQAALESIQRRISQK 131 (168)
Q Consensus 82 ~~Lf~~~kEn~~lqlEa~yreq~~~v~~E------vK~rLDy~V~~e~~~R~~eQ~ 131 (168)
..+=+++|||.-|-+..+|++....-... .|.-.|--|+.+.+.|..++.
T Consensus 7 ~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~ 62 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEK 62 (75)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999887763222 555566667777777666543
No 23
>KOG4253|consensus
Probab=57.68 E-value=1.1e+02 Score=25.32 Aligned_cols=62 Identities=23% Similarity=0.240 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHHHHhhhhH--HHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6810 73 WNQERSKAQAVLYEAKRENI--QMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVS 139 (168)
Q Consensus 73 ~~q~~~~~~~~Lf~~~kEn~--~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~mv~wVi~ 139 (168)
+.+...+..+.+-|+++|+- -||-+-+-.-|+.+=++.+-+-|.- +..-+.-|.||.+||++
T Consensus 42 dakk~~q~~~ei~dmKqelnavs~qD~fAkwaRlnRKi~kl~~ele~-----qs~n~~~q~~~~K~vlS 105 (175)
T KOG4253|consen 42 DAKKESQKVAEIQDMKQELNAVSMQDNFAKWARLNRKINKLDKELET-----QSKNKTAQAHLHKWVLS 105 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 33444455666777787765 4666666666666666665555543 34556779999999875
No 24
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=57.22 E-value=1.2e+02 Score=25.78 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=44.6
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhcC-ChHHHHHHHHHHHHHH
Q psy6810 90 ENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHM-------VSWVVSHVLKSI-TPDQDKQSIKKCISDL 161 (168)
Q Consensus 90 En~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~m-------v~wVi~~V~ksI-~pk~ek~~L~qcIadl 161 (168)
+++.-+++....+-+..+..|+.+-.+.+-+--...++...+.| +=-+..++.+.+ ++..++.+++.-|.+|
T Consensus 78 ~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A~kiL~~~~d~~~~~~lid~~i~~l 157 (250)
T PRK14474 78 AQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQMVKIIRAALADLANATLEQQIVGIFIARL 157 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Confidence 34444455555555555666666666665543333333333322 223344555554 9999999999999999
Q ss_pred HHHh
Q psy6810 162 KALA 165 (168)
Q Consensus 162 e~La 165 (168)
..|.
T Consensus 158 ~~l~ 161 (250)
T PRK14474 158 EHLS 161 (250)
T ss_pred cccC
Confidence 8774
No 25
>PRK12729 fliE flagellar hook-basal body protein FliE; Provisional
Probab=56.67 E-value=90 Score=24.62 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHH--------------HHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Q psy6810 58 NDKLASLKGAIENELWNQERSKAQ--------------AVLYEAKRENIQMQLEAVFRERALFAYQQVKN 113 (168)
Q Consensus 58 ~~~i~~vk~~Ie~~k~~q~~~~~~--------------~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~ 113 (168)
..--+.|+++|+.+...|..++.. ....++.|-.++|++=..-|.++...|+|+.+
T Consensus 56 ~sF~d~Lk~Al~~VN~~Q~~Ad~~~~~~~~G~~~vdLhdVMIA~qKAslSlql~vQVRNKvVeAYqEIM~ 125 (127)
T PRK12729 56 ESFSEAMKNALTSVNDLQVEADELTQKMVFDPNSVDAHDVMIASEKARVALTFTKTIADGVVRAYRELTS 125 (127)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777766666555443 23356678889999999999999999999875
No 26
>COG1610 Uncharacterized conserved protein [Function unknown]
Probab=54.37 E-value=1.2e+02 Score=24.64 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=63.1
Q ss_pred HHHHHHHHHHH-HhhhhHHHh-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcCChHH
Q psy6810 76 ERSKAQAVLYE-AKRENIQMQ-LEAVFRERALFAYQQVKNRLEYQAALESIQRR----ISQKHMVSWVVSHVLKSITPDQ 149 (168)
Q Consensus 76 ~~~~~~~~Lf~-~~kEn~~lq-lEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~----~eQ~~mv~wVi~~V~ksI~pk~ 149 (168)
.+..+.-++.. ++.+-+... -|+.--+-+.-+..|+|.|=||.-.|+..-|+ .||.+| .-|..-..+.|+++.
T Consensus 21 ~r~~tiRli~AAik~~ei~~rk~~l~d~~il~vl~k~iKQRrdS~~~y~~agR~dLa~kE~~Ei-~Ii~~ylP~qLsd~e 99 (148)
T COG1610 21 DRLGTIRLILAAIKQEEIDERKDELDDEEILKVLAKEIKQRRDSAEEYEKAGRQDLAAKERAEI-AIIEEYLPQQLSEDE 99 (148)
T ss_pred hhHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhHH-HHHHHhCcccCCHHH
Confidence 34444444433 343444444 45566677888999999999999999998875 577776 455666677889999
Q ss_pred HHHHHHHHHHHHHH
Q psy6810 150 DKQSIKKCISDLKA 163 (168)
Q Consensus 150 ek~~L~qcIadle~ 163 (168)
-+.+++.+|+++-.
T Consensus 100 ~~~~v~~aIae~Ga 113 (148)
T COG1610 100 LRALVDAAIAEVGA 113 (148)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998753
No 27
>PRK03907 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=52.61 E-value=96 Score=23.19 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhhhHHHHH-------------HHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Q psy6810 61 LASLKGAIENELWNQERSKA-------------QAVLYEAKRENIQMQLEAVFRERALFAYQQVKN 113 (168)
Q Consensus 61 i~~vk~~Ie~~k~~q~~~~~-------------~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~ 113 (168)
-+.++++|+.+.+.|...+. ......+.|--++|++=..-|.+++..|+|+.+
T Consensus 29 ~d~L~~al~~Vn~~Q~~A~~~~~~~~~G~~~dlhevmIA~~kA~ls~q~~vqVRNKlveAYqEIMr 94 (97)
T PRK03907 29 SKLLKQSINELNKTQEQSEKALADIATGQVKDLHQAAIAIGKAETSMKLMLEVRNKAISAYKEILR 94 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556666665555554433 345577888889999999999999999999975
No 28
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=52.61 E-value=4.1 Score=17.72 Aligned_cols=6 Identities=67% Similarity=1.326 Sum_probs=5.0
Q ss_pred hhhhhh
Q psy6810 16 GPVSLG 21 (168)
Q Consensus 16 Gp~~lg 21 (168)
|||.+|
T Consensus 2 gpy~fg 7 (8)
T PF08261_consen 2 GPYSFG 7 (8)
T ss_pred Cccccc
Confidence 899887
No 29
>COG1677 FliE Flagellar hook-basal body protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=50.43 E-value=1.1e+02 Score=23.11 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHH-------------HHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Q psy6810 59 DKLASLKGAIENELWNQERSKAQ-------------AVLYEAKRENIQMQLEAVFRERALFAYQQVKN 113 (168)
Q Consensus 59 ~~i~~vk~~Ie~~k~~q~~~~~~-------------~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~ 113 (168)
+--+.|+..|+.+.+.|..++.. ....++.|-++.|++=...|.+++..|+|+-+
T Consensus 35 sF~~~L~~ai~~vn~~Q~~a~~~~~~~~~G~~~~l~dVmia~~KAs~sLq~ai~VRnKlV~AYqEImr 102 (105)
T COG1677 35 SFAEVLKNAIDDVNDTQKKAEKASEAFILGQAGDLHDVMIAMQKASVSLQTAIQVRNKLVSAYQEIMR 102 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677888888877777666653 33466778889999999999999999999864
No 30
>PRK00732 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=48.75 E-value=1.1e+02 Score=22.91 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=28.3
Q ss_pred HHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Q psy6810 81 QAVLYEAKRENIQMQLEAVFRERALFAYQQVKN 113 (168)
Q Consensus 81 ~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~ 113 (168)
......+.|-.+.|++=..-|.+++..|+|+.+
T Consensus 67 ~~vmiA~~kA~lslq~~vqVRNKlveAYqEIMr 99 (102)
T PRK00732 67 MDVVTAVAETDVAVSTLVSVRDRVIQAYEEIMR 99 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444567788899999999999999999999975
No 31
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=48.34 E-value=1.3e+02 Score=23.45 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=49.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHhhh------hHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy6810 54 KIRTNDKLASLKGAIENELWNQERSKAQ-AVLYEAKRE------NIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQR 126 (168)
Q Consensus 54 n~~R~~~i~~vk~~Ie~~k~~q~~~~~~-~~Lf~~~kE------n~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R 126 (168)
+..++..-+.+.++-+..++.+....-. ..|=++.+| ++.-+.+..+.+-...+..|+.+.+..+-.-=...+
T Consensus 38 ~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek 117 (164)
T PRK14471 38 KEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEK 117 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544444445555444433333333222 233334433 222223333333333444444444444433333333
Q ss_pred HHHHH-------HHHHHHHHHhhh-cCC-hHHHHHHHHHHHHHHH
Q psy6810 127 RISQK-------HMVSWVVSHVLK-SIT-PDQDKQSIKKCISDLK 162 (168)
Q Consensus 127 ~~eQ~-------~mv~wVi~~V~k-sI~-pk~ek~~L~qcIadle 162 (168)
+...+ .++--+..++.. +|+ ++.++.++++.|.++.
T Consensus 118 ~~a~~~l~~~i~~la~~~a~kil~~~l~~~~~~~~lid~~i~~~~ 162 (164)
T PRK14471 118 NAAMAEIKNQVANLSVEIAEKVLRKELSNKEKQHKLVEKMLGDVK 162 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHhcC
Confidence 32222 233334445544 584 5678889999998763
No 32
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=47.38 E-value=1.6e+02 Score=24.18 Aligned_cols=56 Identities=21% Similarity=0.070 Sum_probs=45.7
Q ss_pred HHhhhhHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy6810 70 NELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQ 125 (168)
Q Consensus 70 ~~k~~q~~~~~~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~ 125 (168)
.+...+..++.-+.-|+.-.+++.-+++-|.++|.....+-++.=++++++++...
T Consensus 151 ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ 206 (216)
T cd07627 151 ELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKEL 206 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666667799999999999999999999999999999999988876543
No 33
>TIGR03398 plc_access_R phospholipase C accessory protein PlcR. The class of microbial phosphocholine-preferring phospholipase C enzymes described by model TIGR03396 has two members in Pseudomonas aeruginosa, one of which (PlcH) is hemolytic and can hydrolyzes sphingomyelin as well as phosphatidylcholine. This model describes PlcR, an accessory protein for PlcH with which it forms a heterodimer. The member of the family from P. aeruginosa, although not the members from various Burkholderia species, is encoded immediately downstream of phospholipase C.
Probab=47.25 E-value=31 Score=27.53 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=24.8
Q ss_pred HHHHHHhhhcC-ChHHHHHHHHHHHHHHH
Q psy6810 135 SWVVSHVLKSI-TPDQDKQSIKKCISDLK 162 (168)
Q Consensus 135 ~wVi~~V~ksI-~pk~ek~~L~qcIadle 162 (168)
.-||+.|+.|+ +|+|+...|++-+..|.
T Consensus 100 rkvi~eV~asVpD~eQq~aaid~RL~aLR 128 (141)
T TIGR03398 100 RKVIAEVQASVPDPEQQQAAIDQRLQALR 128 (141)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 46899999999 99999999999888774
No 34
>COG4036 Predicted membrane protein [Function unknown]
Probab=46.72 E-value=9.6 Score=32.11 Aligned_cols=26 Identities=12% Similarity=-0.027 Sum_probs=21.9
Q ss_pred cccchhhhhhHHHHHHHHhhceeeee
Q psy6810 12 FDTIGPVSLGEPIWVSDMAKCAQVMN 37 (168)
Q Consensus 12 TG~tGp~~lg~gl~~y~iSkEiyVin 37 (168)
||.||..+.|+|+.-|+.|+..-=.+
T Consensus 130 tGFTGGAVagsG~lFY~~srRa~g~~ 155 (224)
T COG4036 130 TGFTGGAVAGSGALFYLFSRRANGPH 155 (224)
T ss_pred hccccchhhccchHHHHHHhhccCCC
Confidence 89999999999999999996644333
No 35
>PRK00253 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=44.85 E-value=1.3e+02 Score=22.76 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHH--------------HHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Q psy6810 60 KLASLKGAIENELWNQERSKA--------------QAVLYEAKRENIQMQLEAVFRERALFAYQQVKN 113 (168)
Q Consensus 60 ~i~~vk~~Ie~~k~~q~~~~~--------------~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~ 113 (168)
--+.++++|+.+.+.+...+. ........|-.+.|++=..-|.+++..|+|+.+
T Consensus 38 F~~~L~~ai~~vn~~q~~a~~~~~~~~~G~~~v~lhevmia~~kA~lslq~~~qVRNKlv~AYqEIMr 105 (108)
T PRK00253 38 FAGQLKAALDKVNDTQQAARTLAEKFELGDPGVSLNDVMIALQKASVSFQAGIQVRNKLVAAYQEIMN 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334555566655555544443 334466677788999999999999999999865
No 36
>PRK12728 fliE flagellar hook-basal body protein FliE; Provisional
Probab=44.07 E-value=1.3e+02 Score=22.42 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=28.7
Q ss_pred HHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Q psy6810 81 QAVLYEAKRENIQMQLEAVFRERALFAYQQVKN 113 (168)
Q Consensus 81 ~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~ 113 (168)
........|-.++|++=..-|.+++..|+|+-+
T Consensus 67 hevmiA~~kA~lslq~~vqVRNKlv~AYqEIMr 99 (102)
T PRK12728 67 HDVMIAAQKASISLQLTVQIRNKVVEAYQEIMR 99 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445577888999999999999999999999865
No 37
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=39.49 E-value=1.3e+02 Score=25.46 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHH
Q psy6810 74 NQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNR 114 (168)
Q Consensus 74 ~q~~~~~~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~r 114 (168)
..+..+....++++.+||-.|+.|...+++...-+++++..
T Consensus 61 ~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~e 101 (276)
T PRK13922 61 VSGVFESLASLFDLREENEELKKELLELESRLQELEQLEAE 101 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677788888888888888887777766655543
No 38
>PF02049 FliE: Flagellar hook-basal body complex protein FliE; InterPro: IPR001624 Four genes from the major Bacillus subtilis chemotaxis locus have been shown to encode proteins that are similar to the Salmonella typhimurium FlgB, FlgC, FlgG and FliF proteins; a further gene product is similar to the Escherichia coli FliE protein []. All of these proteins are thought to form part of the hook-basal body complex of the bacterial flagella []. The FlgB, FlgC and FlgG proteins are components of the proximal and distal rods; FliF forms the M-ring that anchors the rod assembly to the membrane; but the role of FliE has not yet been determined []. The similarity between the proteins in these two organisms suggests that the structures of the M-ring and the rod may be similar []. Nevertheless, some differences in size and amino acid composition between some of the homologues suggest the basal body proteins may be organised slightly differently within B. subtilis []. From gel electrophoresis and autoradiography of 35S-labelled S. typhimurium hook-basal body complexes and the deduced number of sulphur-containing residues in FliE, the stoichiometry of the protein in the hook-basal body complex has been estimated to be about nine subunits []. FliE does not undergo cleavage of a signal peptide, nor does it show any similarity to the axial components like the rod or hook proteins, which are thought to be exported by the flagellum-specific export pathway []. On this evidence, it has been suggested that FliE may be in the vicinity of the MS ring, perhaps acting as an adaptor protein between ring and rod substructures [].; GO: 0003774 motor activity, 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum
Probab=36.55 E-value=1.6e+02 Score=21.25 Aligned_cols=33 Identities=24% Similarity=0.481 Sum_probs=28.7
Q ss_pred HHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Q psy6810 81 QAVLYEAKRENIQMQLEAVFRERALFAYQQVKN 113 (168)
Q Consensus 81 ~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~ 113 (168)
.....+..|-.+.|++=..-|.+++..|+|+-+
T Consensus 61 ~~vmia~~kA~lslq~~vqVRnK~v~AYqEImr 93 (96)
T PF02049_consen 61 HEVMIAMQKASLSLQLAVQVRNKAVEAYQEIMR 93 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455577888999999999999999999999865
No 39
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=34.08 E-value=2.9e+02 Score=23.41 Aligned_cols=57 Identities=12% Similarity=0.017 Sum_probs=45.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy6810 67 AIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALES 123 (168)
Q Consensus 67 ~Ie~~k~~q~~~~~~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~ 123 (168)
.-+.+...+..++..+.-|+--.+|+.-+++-|.++|.....+-++.=|.++++++.
T Consensus 164 ~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qk 220 (234)
T cd07664 164 AKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQ 220 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666778999999999999999999999999999998888888653
No 40
>PRK01482 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=32.94 E-value=2.2e+02 Score=21.67 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHH--------------HHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Q psy6810 60 KLASLKGAIENELWNQERSKA--------------QAVLYEAKRENIQMQLEAVFRERALFAYQQVKN 113 (168)
Q Consensus 60 ~i~~vk~~Ie~~k~~q~~~~~--------------~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~ 113 (168)
--+.++++|+.+.+.|...+. ......+.|-.+.|++=..-|.++...|+|+.+
T Consensus 39 F~d~L~~Al~~Vn~~Q~~a~~~~~~~~~gg~~~dlhevmIA~qkA~lslql~vqVRNKlVeAYqEIMr 106 (108)
T PRK01482 39 FKDTLLNAIDDVNNSQLNVSKVTEQAILDPESVDVHDVTIAMAKANMNLSIAKAVVERSIKAYQDIIN 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555554443333 333466778889999999999999999999875
No 41
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=32.66 E-value=2e+02 Score=21.14 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Q psy6810 61 LASLKGAIENELWNQERSKAQAVLYEAKREN 91 (168)
Q Consensus 61 i~~vk~~Ie~~k~~q~~~~~~~~Lf~~~kEn 91 (168)
++.|+..++..+.++.+++.+--=+.+++.|
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkn 62 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVRQKN 62 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888888888888888887766556666555
No 42
>PF13062 DUF3924: Protein of unknown function (DUF3924)
Probab=32.49 E-value=26 Score=24.00 Aligned_cols=25 Identities=12% Similarity=-0.113 Sum_probs=18.3
Q ss_pred hccccccccchhhhhhHHHHHHHHhhce
Q psy6810 6 VMQHGKFDTIGPVSLGEPIWVSDMAKCA 33 (168)
Q Consensus 6 ~~~~~KTG~tGp~~lg~gl~~y~iSkEi 33 (168)
+.+..|||.| ..-..|.-.+||||.
T Consensus 21 qayqkktgat---isestlvq~liskef 45 (62)
T PF13062_consen 21 QAYQKKTGAT---ISESTLVQSLISKEF 45 (62)
T ss_pred HHHHhhcCCc---cchhHHHHHHHHHHH
Confidence 4567899986 555567778899884
No 43
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=32.34 E-value=45 Score=19.22 Aligned_cols=15 Identities=13% Similarity=-0.108 Sum_probs=8.6
Q ss_pred cccc-cchhhhhhHHH
Q psy6810 10 GKFD-TIGPVSLGEPI 24 (168)
Q Consensus 10 ~KTG-~tGp~~lg~gl 24 (168)
|+|| ...+....+|+
T Consensus 3 P~TG~~~~~~~~~~G~ 18 (34)
T TIGR01167 3 PKTGESGNSLLLLLGL 18 (34)
T ss_pred CCCCCcccHHHHHHHH
Confidence 8899 44444444454
No 44
>PF12116 SpoIIID: Stage III sporulation protein D; InterPro: IPR014208 Members of this entry represent the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if, and only if, the species is capable of endospore formation. In Bacillus subtilis SpoIIID is a DNA binding protein that is involved in gene repression as well as activation [].; PDB: 2L0K_A.
Probab=30.64 E-value=95 Score=22.81 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy6810 79 KAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAA 120 (168)
Q Consensus 79 ~~~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~rLDy~V~ 120 (168)
-.+...|-+||-|+--..----.+=--.+|.||+.+||+--+
T Consensus 23 R~~Ak~FGvSKSTVHkDvteRL~~in~~La~eV~~vL~~NKa 64 (82)
T PF12116_consen 23 RQAAKVFGVSKSTVHKDVTERLPKINPELAREVRKVLDYNKA 64 (82)
T ss_dssp HHHHHHHTS-HHHHHHHHTTHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 345566888888886654322222234689999999998543
No 45
>TIGR00205 fliE flagellar hook-basal body complex protein FliE. fliE is a component of the flagellar hook-basal body complex located possibly at (MS-ring)-rod junction.
Probab=30.40 E-value=2.4e+02 Score=21.32 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHH--------------HHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Q psy6810 59 DKLASLKGAIENELWNQERSKA--------------QAVLYEAKRENIQMQLEAVFRERALFAYQQVKN 113 (168)
Q Consensus 59 ~~i~~vk~~Ie~~k~~q~~~~~--------------~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~ 113 (168)
.--+.+++.|+.+.+.+...+. .....++.|-.+.|++=..-|.+++..|+|+-+
T Consensus 38 sF~~~L~~ai~~vn~~q~~a~~~~~~~~~G~~~~dlhevmia~~kA~lslq~~vqVRNKlveAYqEIMr 106 (108)
T TIGR00205 38 SFSDLLKNSITDLNKTQLASDKVTEQAALGPSSVDLHDVMIAMQKASMSMSILKEVRNKAVKAYQEIMR 106 (108)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344555555555544443333 334466778889999999999999999999864
No 46
>KOG1488|consensus
Probab=29.97 E-value=1.2e+02 Score=28.92 Aligned_cols=52 Identities=17% Similarity=0.372 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHH-HHHHH
Q psy6810 102 ERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCIS-DLKAL 164 (168)
Q Consensus 102 eq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~mv~wVi~~V~ksI~pk~ek~~L~qcIa-dle~L 164 (168)
++...+..|+.+.+|+ +-|.+-.|||+.+|.+.=+| .+|.++-+|+. .|..+
T Consensus 351 ~~~~~i~~ei~~~~~~----------L~~dQygNYVIQHVie~g~~-~~~~~I~~~l~~~ll~~ 403 (503)
T KOG1488|consen 351 DQKQPLMEEIIRNCDQ----------LAQDQYGNYVIQHVIEHGSP-YRDTIIIKCLLGNLLSM 403 (503)
T ss_pred HhhhHHHHHHHHHHHH----------HHhhhhhhHHHHHHHhcCCh-hhhhhHHHHHHhhHHHH
Confidence 4555577777777665 66889999999999998888 55567777764 34444
No 47
>PRK01699 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=28.86 E-value=2.5e+02 Score=20.99 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Q psy6810 79 KAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKN 113 (168)
Q Consensus 79 ~~~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~ 113 (168)
+.......+.|-.+.|++=..-|.++...|+|+.|
T Consensus 62 ~lhevmiA~~kA~lslq~~vqVRNK~veAYqEImr 96 (99)
T PRK01699 62 ETHDVLIQQKKAESQMKTAALVRDNLIENYKSLIN 96 (99)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455678889999999999999999999999975
No 48
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=27.28 E-value=44 Score=20.02 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=8.4
Q ss_pred hhhHHHHHHHH
Q psy6810 19 SLGEPIWVSDM 29 (168)
Q Consensus 19 ~lg~gl~~y~i 29 (168)
.+++||.+|++
T Consensus 10 a~a~~Lf~YLv 20 (29)
T PRK14740 10 ALATGLFVYLL 20 (29)
T ss_pred HHHHHHHHHHH
Confidence 67788888875
No 49
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=26.84 E-value=2.4e+02 Score=21.53 Aligned_cols=60 Identities=10% Similarity=0.012 Sum_probs=31.4
Q ss_pred cccchhhhhhHHHHHHHHhhceeeeechHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHHHhh
Q psy6810 12 FDTIGPVSLGEPIWVSDMAKCAQVMNRSVVLTWVMYQSHR--AGKIRTNDKLASLKGAIENELW 73 (168)
Q Consensus 12 TG~tGp~~lg~gl~~y~iSkEiyVin~Eti~~~~~y~~~k--~gn~~R~~~i~~vk~~Ie~~k~ 73 (168)
||+.| .++.|+..+++.+-+.---+=.|.+|++..+.- +..-.|..+...++..++...+
T Consensus 46 ~Gi~~--G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~we~Cr~~r~~~~~~~~~~~e~~~~ 107 (118)
T PF12597_consen 46 YGIAG--GFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGSWEYCRYNRRKERQQMKRAVEAMQE 107 (118)
T ss_pred HHHHH--HHHHHhhhhcccCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45542 556667777776644333333344443333322 4466666666666666664443
No 50
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=26.68 E-value=4.9e+02 Score=23.62 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=26.1
Q ss_pred HHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHH
Q psy6810 81 QAVLYEAKRENIQMQLEAVFRERALFAYQQVK 112 (168)
Q Consensus 81 ~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK 112 (168)
....|++..||-.|..|...+++...-+.+++
T Consensus 56 ~~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~ 87 (337)
T PRK14872 56 SSHALVLETENFLLKERIALLEERLKSYEEAN 87 (337)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46779999999999999998877776666664
No 51
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=26.40 E-value=5.4e+02 Score=24.09 Aligned_cols=82 Identities=13% Similarity=0.049 Sum_probs=41.0
Q ss_pred ccchhhhhhHHHHHHHHhhceeeeechHHH-HHHH-HHHHHhh------hhhhHHHHHHHHHHHHHHhhhhHHHHHHH--
Q psy6810 13 DTIGPVSLGEPIWVSDMAKCAQVMNRSVVL-TWVM-YQSHRAG------KIRTNDKLASLKGAIENELWNQERSKAQA-- 82 (168)
Q Consensus 13 G~tGp~~lg~gl~~y~iSkEiyVin~Eti~-~~~~-y~~~k~g------n~~R~~~i~~vk~~Ie~~k~~q~~~~~~~-- 82 (168)
|.+|| +-+|+.+|-+++-+| |++ .+++ +.+.|+- ++-|........++....+.-+|.--...
T Consensus 242 g~~~~--~PaallLYWv~snlw-----tl~Qq~i~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (429)
T PRK00247 242 GLTGP--FPTAIALYWVANNLW-----TLIQNIIMYLILERKYPLTDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLR 314 (429)
T ss_pred HHhcc--chHHHHHHHHHhhHH-----HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44443 567888898877665 223 2333 3444422 34444444444444444444444333322
Q ss_pred ------HHHHHhhhhHHHhHHHHHH
Q psy6810 83 ------VLYEAKRENIQMQLEAVFR 101 (168)
Q Consensus 83 ------~Lf~~~kEn~~lqlEa~yr 101 (168)
...++-+||.++..+...+
T Consensus 315 ~~~~p~~~~~~~~~~~~~~~~~~~~ 339 (429)
T PRK00247 315 MIITPWRAPELHAENAEIKKTRTAE 339 (429)
T ss_pred ccCCcccHHHHHHHHHHHHHHHHHH
Confidence 3356666776665544333
No 52
>PRK14752 delta-hemolysin; Provisional
Probab=26.37 E-value=51 Score=21.20 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhh
Q psy6810 132 HMVSWVVSHVLK 143 (168)
Q Consensus 132 ~mv~wVi~~V~k 143 (168)
++++||++-|+|
T Consensus 29 ~~vk~ii~tv~k 40 (44)
T PRK14752 29 DLVKWIIDTVNK 40 (44)
T ss_pred HHHHHHHHHHHH
Confidence 578999998876
No 53
>KOG0018|consensus
Probab=26.22 E-value=6.6e+02 Score=26.62 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=47.1
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-ChHHHHHHHHHHHHHHHHH
Q psy6810 90 ENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKSI-TPDQDKQSIKKCISDLKAL 164 (168)
Q Consensus 90 En~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~mv~wVi~~V~ksI-~pk~ek~~L~qcIadle~L 164 (168)
||..+ .+-+-++|+ =+...|..|.|++++|.+.--...-+...-=+++..+++ +-+.+.+.+.+-|+.++.|
T Consensus 771 ee~~~-~~~~a~k~~--ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~ 843 (1141)
T KOG0018|consen 771 EEREL-QQEFAKKRL--EFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEEL 843 (1141)
T ss_pred HHHHH-HHHHHHHHH--HHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHH
Confidence 45555 333333333 367778888888888877544444556666677777888 6666667777777777655
No 54
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.59 E-value=3e+02 Score=20.78 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=28.4
Q ss_pred hHHHhHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6810 91 NIQMQLEAVFR-------ERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVL 142 (168)
Q Consensus 91 n~~lqlEa~yr-------eq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~mv~wVi~~V~ 142 (168)
|..+-.+|.|. ++.+.-.++.+..+||++...+-..-..=...++-+..+..
T Consensus 39 nl~lS~~Aa~~ap~IlmsQNRq~~~dr~ra~~D~~inl~ae~ei~~l~~~l~~l~~~~~ 97 (108)
T PF06210_consen 39 NLVLSLEAAYQAPLILMSQNRQAARDRLRAELDYQINLKAEQEIERLHRKLDALREKLG 97 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 44555555553 45556667888888888865543333332333344444433
No 55
>PRK00790 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=25.20 E-value=3.1e+02 Score=20.84 Aligned_cols=35 Identities=14% Similarity=0.279 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Q psy6810 79 KAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKN 113 (168)
Q Consensus 79 ~~~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~ 113 (168)
+.......+.+-.+.||+=..-|.+++..|+|+-|
T Consensus 72 dlhevmiA~~kA~lslq~~vqVRNKlVeAYqEIMr 106 (109)
T PRK00790 72 DTREVVDAVMQAEQALQTAVAIRDKVVEAYLEILR 106 (109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44455567778889999999999999999999865
No 56
>PF02387 IncFII_repA: IncFII RepA protein family; InterPro: IPR003446 These proteins are plasmid encoded and essential for plasmid replication, they are also involved in copy control functions [].; GO: 0006276 plasmid maintenance
Probab=25.15 E-value=4.8e+02 Score=22.99 Aligned_cols=45 Identities=11% Similarity=0.253 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-c---CChHHHHHHHHHHHHHHHHHhhh
Q psy6810 123 SIQRRISQKHMVSWVVSHVLK-S---ITPDQDKQSIKKCISDLKALAAR 167 (168)
Q Consensus 123 ~~~R~~eQ~~mv~wVi~~V~k-s---I~pk~ek~~L~qcIadle~La~k 167 (168)
...++.....|.+|++..--. + ++|+..|...++-+-.|++||++
T Consensus 232 ~L~e~~ar~~I~~~Lik~ys~~El~~lg~~~lkk~V~~ey~~L~k~a~~ 280 (281)
T PF02387_consen 232 KLDEDEARQEILRQLIKEYSKDELYKLGPEGLKKLVNQEYYQLRKIAKS 280 (281)
T ss_pred ccCHHHHHHHHHHHHHHHcChhhhhhCCHHHHHHHHHHHHHHHHHHhhc
Confidence 445556666788888877765 3 38999999999999999999875
No 57
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=25.08 E-value=62 Score=18.65 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhh
Q psy6810 132 HMVSWVVSHVLK 143 (168)
Q Consensus 132 ~mv~wVi~~V~k 143 (168)
++++||++-|.|
T Consensus 11 dfvKlI~~TV~K 22 (25)
T PF05372_consen 11 DFVKLIIETVKK 22 (25)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578999988876
No 58
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=24.41 E-value=80 Score=22.26 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhh-cC-ChHHHHHHHHHHHHH
Q psy6810 127 RISQKHMVSWVVSHVLK-SI-TPDQDKQSIKKCISD 160 (168)
Q Consensus 127 ~~eQ~~mv~wVi~~V~k-sI-~pk~ek~~L~qcIad 160 (168)
..|.+..++-|++.|.| .| +|=-.++.+..||.|
T Consensus 37 ~~e~e~~l~~Ii~~v~kq~Lss~~v~~~~ie~Av~e 72 (73)
T PF12213_consen 37 EEEREDWLDKIIDAVQKQPLSSSIVDKEHIESAVKE 72 (73)
T ss_dssp TTTHHHHHHHHHHHHTTS--SSSEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHc
Confidence 45677788999999999 56 888899999999876
No 59
>COG2891 MreD Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=23.92 E-value=50 Score=26.92 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=26.5
Q ss_pred hhccccccccchhhhhhHHHHHHHHhhceeeeech
Q psy6810 5 FVMQHGKFDTIGPVSLGEPIWVSDMAKCAQVMNRS 39 (168)
Q Consensus 5 f~~~~~KTG~tGp~~lg~gl~~y~iSkEiyVin~E 39 (168)
|++.| ||.-|.++++.++..|++.|=--++...
T Consensus 66 ~D~~~--~sllGv~al~f~li~ylv~~~~~~l~~~ 98 (167)
T COG2891 66 YDVYY--GSLLGVHALGFSLIGYLVAKLQKVLRNN 98 (167)
T ss_pred HHHHc--cchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667 8889999999999999998866555555
No 60
>KOG0810|consensus
Probab=23.63 E-value=5.2e+02 Score=22.91 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH------------HHHHHHHHHHHHhhhcC
Q psy6810 100 FRERALFAYQQVKNRLEYQAALESIQRRI------------SQKHMVSWVVSHVLKSI 145 (168)
Q Consensus 100 yreq~~~v~~EvK~rLDy~V~~e~~~R~~------------eQ~~mv~wVi~~V~ksI 145 (168)
-+.+..+..+|++.|=|--.++|.+.|+. +|-+|++-|+.+|.+.-
T Consensus 190 ~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~ 247 (297)
T KOG0810|consen 190 DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAV 247 (297)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 47788899999999999999999999987 47889999999998865
No 61
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=23.14 E-value=3.8e+02 Score=23.20 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhhhHHHhHHHHHH-HHHHH
Q psy6810 76 ERSKAQAVLYEAKRENIQMQLEAVFR-ERALF 106 (168)
Q Consensus 76 ~~~~~~~~Lf~~~kEn~~lqlEa~yr-eq~~~ 106 (168)
+..+....+.++.+||.+|..|.... .++..
T Consensus 60 ~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 60 GISENLKDVNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667778888888777665 34333
No 62
>KOG4304|consensus
Probab=23.13 E-value=72 Score=27.55 Aligned_cols=28 Identities=25% Similarity=0.544 Sum_probs=22.5
Q ss_pred HHhhhcCChHHHHHHHHHHHHHHHHHhh
Q psy6810 139 SHVLKSITPDQDKQSIKKCISDLKALAA 166 (168)
Q Consensus 139 ~~V~ksI~pk~ek~~L~qcIadle~La~ 166 (168)
.+|.|-|=.|.+.+-|++|+.+||.|..
T Consensus 32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~ 59 (250)
T KOG4304|consen 32 RKVRKPLLEKKRRARINRCLDELKDLIP 59 (250)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777667777899999999998864
No 63
>PF07769 PsiF_repeat: psiF repeat; InterPro: IPR011690 This region is approximately 35 residues long. It is found repeated in a number of putative phosphate starvation-inducible proteins expressed by various bacterial species. PsiF (Q7AH28 from SWISSPROT) is known to be an example of such phosphate starvation-inducible proteins [].
Probab=21.88 E-value=2e+02 Score=17.89 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHHHHHHH
Q psy6810 129 SQKHMVSWVVSHVLKSITPDQDKQSIKKCI 158 (168)
Q Consensus 129 eQ~~mv~wVi~~V~ksI~pk~ek~~L~qcI 158 (168)
+|+.|..==-+.-.|+|..+..|..|..|+
T Consensus 5 QQ~kM~~Cn~~A~~k~LkGdeRK~FMs~CL 34 (35)
T PF07769_consen 5 QQEKMKTCNAEAKEKSLKGDERKAFMSSCL 34 (35)
T ss_pred HHHHHHHHHHHHHhCccccHHHHHHHHHHc
Confidence 566776666666678888899999999986
No 64
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=21.79 E-value=2.3e+02 Score=20.13 Aligned_cols=40 Identities=5% Similarity=0.321 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC-ChHHHHHHHHHHHHHHH
Q psy6810 123 SIQRRISQKHMVSWVVSHVLKSI-TPDQDKQSIKKCISDLK 162 (168)
Q Consensus 123 ~~~R~~eQ~~mv~wVi~~V~ksI-~pk~ek~~L~qcIadle 162 (168)
++.|+.+|-.-++-+++++..+| +.+..-+.+++.+..=-
T Consensus 2 aL~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~~~~~t~ 42 (78)
T PF08651_consen 2 ALEKELEQLRKINPVIEGLIETLRSAKSNMNRVQETVESTN 42 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888 54444455555555433
No 65
>KOG3461|consensus
Probab=21.46 E-value=54 Score=25.99 Aligned_cols=36 Identities=14% Similarity=-0.045 Sum_probs=27.6
Q ss_pred hhccccccccchh-hhhhHHHHHHHHhhceeeeechH
Q psy6810 5 FVMQHGKFDTIGP-VSLGEPIWVSDMAKCAQVMNRSV 40 (168)
Q Consensus 5 f~~~~~KTG~tGp-~~lg~gl~~y~iSkEiyVin~Et 40 (168)
|.-+-..||+|+| +..|+|..+|+-=+-.||..++-
T Consensus 29 ~~~~~~~~~v~~p~v~~~ta~~~y~ay~r~~~k~~~n 65 (132)
T KOG3461|consen 29 LGTVKDIAAVTPPCVAAGTAATAYLAYKRFYVKDHQN 65 (132)
T ss_pred hccccchhhcCCcceecchhhhhhhhheeeeeeeccc
Confidence 4455677999986 56678888898888888887764
No 66
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.66 E-value=1.4e+02 Score=23.98 Aligned_cols=23 Identities=9% Similarity=-0.064 Sum_probs=16.8
Q ss_pred cccccchhhhhhHHHHHHHHhhc
Q psy6810 10 GKFDTIGPVSLGEPIWVSDMAKC 32 (168)
Q Consensus 10 ~KTG~tGp~~lg~gl~~y~iSkE 32 (168)
.|+++.|...+-.|++.|+.+..
T Consensus 44 tKa~TlG~~liLlg~~l~~~~~~ 66 (145)
T PRK12586 44 TKSSTLSVLLTLIGVLIYFIVNT 66 (145)
T ss_pred ccchhhHHHHHHHHHHHHHhccc
Confidence 57888887788888888765443
No 67
>KOG3915|consensus
Probab=20.16 E-value=8.1e+02 Score=23.85 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=3.6
Q ss_pred ccchhhhhh
Q psy6810 13 DTIGPVSLG 21 (168)
Q Consensus 13 G~tGp~~lg 21 (168)
|.-||+++.
T Consensus 487 G~~gp~i~a 495 (641)
T KOG3915|consen 487 GFPGPFIFA 495 (641)
T ss_pred CCCCccccc
Confidence 333444333
Done!