Query psy6810
Match_columns 168
No_of_seqs 130 out of 173
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 19:00:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cly_A ATP synthase B chain, m 100.0 4.9E-71 1.7E-75 458.6 12.7 166 3-168 20-208 (214)
2 3ghg_A Fibrinogen alpha chain; 47.8 1.1E+02 0.0038 28.3 9.6 36 58-93 63-99 (562)
3 2b5u_A Colicin E3; high resolu 46.5 96 0.0033 28.6 8.9 46 57-102 289-334 (551)
4 3p01_A Two-component response 46.4 32 0.0011 24.7 4.9 55 101-164 5-59 (184)
5 3fx0_A NF-kappa-B essential mo 31.2 1.4E+02 0.0048 21.5 6.0 45 55-99 34-78 (96)
6 3jsv_C NF-kappa-B essential mo 30.7 1.5E+02 0.0051 21.2 6.9 55 55-111 19-73 (94)
7 1a93_B MAX protein, coiled coi 30.6 36 0.0012 20.2 2.3 20 81-100 13-32 (34)
8 2v6z_M DNA polymerase epsilon 27.9 17 0.00057 26.4 0.6 33 129-161 64-98 (99)
9 4h62_V Mediator of RNA polymer 27.4 44 0.0015 19.1 2.3 17 145-161 9-25 (31)
10 2ke4_A CDC42-interacting prote 24.7 59 0.002 23.2 3.1 21 143-163 9-29 (98)
11 1dtc_A Acetyl-delta-toxin; NMR 22.3 48 0.0016 18.5 1.7 12 132-143 11-22 (26)
12 3lof_A Heat shock 70 kDa prote 21.4 1.6E+02 0.0054 20.3 4.9 6 156-161 66-71 (113)
13 2zxx_A Geminin; coiled-coil, c 21.0 2.1E+02 0.0073 19.7 5.4 19 81-99 26-44 (79)
14 3ra3_A P1C; coiled coil domain 20.2 94 0.0032 17.3 2.6 21 53-73 8-28 (28)
No 1
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=100.00 E-value=4.9e-71 Score=458.62 Aligned_cols=166 Identities=31% Similarity=0.514 Sum_probs=89.9
Q ss_pred chhhccccccccchhhhhhHHHHHHHHhhceeeeechHHHHH-----HHHHHHHhh------------------hhhhHH
Q psy6810 3 SRFVMQHGKFDTIGPVSLGEPIWVSDMAKCAQVMNRSVVLTW-----VMYQSHRAG------------------KIRTND 59 (168)
Q Consensus 3 ~~f~~~~~KTG~tGp~~lg~gl~~y~iSkEiyVin~Eti~~~-----~~y~~~k~g------------------n~~R~~ 59 (168)
+||++||+|||+||||++|+||++|+||||||||||||++++ ++|+++++| |++|++
T Consensus 20 ~wf~~l~~KTGvtGPY~~~~GL~~yliSKEiyVvneEt~~~~~~~~~~~~~~K~~Gp~~a~~~D~~~~~i~~~ln~~r~~ 99 (214)
T 2cly_A 20 EFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITPETFSAISTIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQA 99 (214)
T ss_dssp -----------------------------------------------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHcCceEEEechHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999997744 445667766 999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6810 60 KLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVS 139 (168)
Q Consensus 60 ~i~~vk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~mv~wVi~ 139 (168)
|+++++++|+++|++||+++++++|||++|||++|++|++||+|+++||+|||+||||||++|+++||.||+||++||++
T Consensus 100 ~i~~lk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rLDy~v~~e~~~r~~eQ~~mv~wV~~ 179 (214)
T 2cly_A 100 SIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWVEK 179 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCChHHHHHHHHHHHHHHHHHhhhC
Q psy6810 140 HVLKSITPDQDKQSIKKCISDLKALAARA 168 (168)
Q Consensus 140 ~V~ksI~pk~ek~~L~qcIadle~La~k~ 168 (168)
+|.|+|||+|+|++|++||+|||.|++++
T Consensus 180 ~V~k~it~~~ek~~L~~cIadlk~La~~~ 208 (214)
T 2cly_A 180 RVVQSISAQQEKETIAKCIADLKLLSKKA 208 (214)
T ss_dssp HHTC-------------------------
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999764
No 2
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.77 E-value=1.1e+02 Score=28.28 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhhhHH
Q psy6810 58 NDKLASLKGAIENELWNQERSKA-QAVLYEAKRENIQ 93 (168)
Q Consensus 58 ~~~i~~vk~~Ie~~k~~q~~~~~-~~~Lf~~~kEn~~ 93 (168)
...|+.|++.+++.++.-.-++. ++.+++.-|+++.
T Consensus 63 tkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~ 99 (562)
T 3ghg_A 63 TNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFS 99 (562)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHH
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence 34577777777766443333332 5666777766653
No 3
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=46.52 E-value=96 Score=28.61 Aligned_cols=46 Identities=15% Similarity=0.009 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHhHHHHHHH
Q psy6810 57 TNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRE 102 (168)
Q Consensus 57 R~~~i~~vk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~~lqlEa~yre 102 (168)
+.-....+++|+|.++..+......|-+-.+.||+-...+|.+.-+
T Consensus 289 ~ilt~~elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~ 334 (551)
T 2b5u_A 289 DVLSPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQAN 334 (551)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 3344578899999999999999999999999999888888877543
No 4
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=46.43 E-value=32 Score=24.73 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHH
Q psy6810 101 RERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKAL 164 (168)
Q Consensus 101 req~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~mv~wVi~~V~ksI~pk~ek~~L~qcIadle~L 164 (168)
.+|....|.++|++-+ ...|+.+|..++.-|...+..+++++ ++|+.++..+..+
T Consensus 5 ~~~~~~~~~~l~~~~~------~l~~~~~~~~~L~~is~~l~~~~dl~---~il~~i~~~l~~~ 59 (184)
T 3p01_A 5 VQRAAETYDLLKQRTE------ELRRANAQMSLLTVLVQVTQASNSLE---AILTPIATAFAES 59 (184)
T ss_dssp -CTTTTTHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHH
Confidence 3455566788887764 57788888999999999999999865 4555555555444
No 5
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=31.19 E-value=1.4e+02 Score=21.50 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHhHHHH
Q psy6810 55 IRTNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAV 99 (168)
Q Consensus 55 ~~R~~~i~~vk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~~lqlEa~ 99 (168)
.+++..|+.+++.|...+.....++..+.=.++-++-...+.++.
T Consensus 34 ~~KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaR 78 (96)
T 3fx0_A 34 VAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAR 78 (96)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999888888888877777777777766655543
No 6
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=30.68 E-value=1.5e+02 Score=21.24 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHH
Q psy6810 55 IRTNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQV 111 (168)
Q Consensus 55 ~~R~~~i~~vk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~~lqlEa~yreq~~~v~~Ev 111 (168)
.+++..|+.+++.|...+.....++..+.=.++-++-...+..+ |||++.=..++
T Consensus 19 ~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERad--REkl~~eKe~L 73 (94)
T 3jsv_C 19 VAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHA--REKLVEKKEYL 73 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHTTSHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHH
Confidence 56889999999999998888888888877788888776555544 55554433333
No 7
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=30.63 E-value=36 Score=20.25 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=12.1
Q ss_pred HHHHHHHhhhhHHHhHHHHH
Q psy6810 81 QAVLYEAKRENIQMQLEAVF 100 (168)
Q Consensus 81 ~~~Lf~~~kEn~~lqlEa~y 100 (168)
++.+-|++|.|..|+.+.+-
T Consensus 13 qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHh
Confidence 45556666666666666543
No 8
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}
Probab=27.93 E-value=17 Score=26.38 Aligned_cols=33 Identities=6% Similarity=0.194 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhhc-C-ChHHHHHHHHHHHHHH
Q psy6810 129 SQKHMVSWVVSHVLKS-I-TPDQDKQSIKKCISDL 161 (168)
Q Consensus 129 eQ~~mv~wVi~~V~ks-I-~pk~ek~~L~qcIadl 161 (168)
|.+..++-|++.|.+. | +|=-+++.+..||.++
T Consensus 64 e~e~~L~~Iid~lqkq~LsS~~Vdk~~VE~AVkEc 98 (99)
T 2v6z_M 64 ELEDKLEKIINAVEKQPLSSNMIERSVVEAAVQES 98 (99)
T ss_dssp THHHHHHHHHHHHTTSCCSSSEECHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCccccccHHHHHHHHHHh
Confidence 5667789999999995 5 8889999999999875
No 9
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=27.43 E-value=44 Score=19.06 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=13.4
Q ss_pred CChHHHHHHHHHHHHHH
Q psy6810 145 ITPDQDKQSIKKCISDL 161 (168)
Q Consensus 145 I~pk~ek~~L~qcIadl 161 (168)
.+.+|..+.|++||...
T Consensus 9 fdekqieelldncietf 25 (31)
T 4h62_V 9 FDEKQIEELLDNCIETF 25 (31)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 47788889999999753
No 10
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=24.74 E-value=59 Score=23.16 Aligned_cols=21 Identities=10% Similarity=0.431 Sum_probs=18.0
Q ss_pred hcCChHHHHHHHHHHHHHHHH
Q psy6810 143 KSITPDQDKQSIKKCISDLKA 163 (168)
Q Consensus 143 ksI~pk~ek~~L~qcIadle~ 163 (168)
++|.|.+++.-|.+.|.+|+.
T Consensus 9 s~LPpeqRkkkL~~Ki~el~~ 29 (98)
T 2ke4_A 9 SHLPPEQQRKRLQQQLEERSR 29 (98)
T ss_dssp SSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 467899999999999998875
No 11
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=22.26 E-value=48 Score=18.46 Aligned_cols=12 Identities=33% Similarity=0.858 Sum_probs=10.0
Q ss_pred HHHHHHHHHhhh
Q psy6810 132 HMVSWVVSHVLK 143 (168)
Q Consensus 132 ~mv~wVi~~V~k 143 (168)
++++||++-|.|
T Consensus 11 dfvKlI~~TV~K 22 (26)
T 1dtc_A 11 DLVKWIIDTVNK 22 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578999998876
No 12
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=21.41 E-value=1.6e+02 Score=20.34 Aligned_cols=6 Identities=17% Similarity=0.124 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy6810 156 KCISDL 161 (168)
Q Consensus 156 qcIadl 161 (168)
..+.+|
T Consensus 66 ~k~~eL 71 (113)
T 3lof_A 66 HKRKEL 71 (113)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 13
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.95 E-value=2.1e+02 Score=19.73 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=14.4
Q ss_pred HHHHHHHhhhhHHHhHHHH
Q psy6810 81 QAVLYEAKRENIQMQLEAV 99 (168)
Q Consensus 81 ~~~Lf~~~kEn~~lqlEa~ 99 (168)
++.|.++..||-.|--+..
T Consensus 26 R~AL~eaL~EN~~Lh~~ie 44 (79)
T 2zxx_A 26 RKALYEALKENEKLHKEIE 44 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6788888888888865554
No 14
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.16 E-value=94 Score=17.31 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=14.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhh
Q psy6810 53 GKIRTNDKLASLKGAIENELW 73 (168)
Q Consensus 53 gn~~R~~~i~~vk~~Ie~~k~ 73 (168)
-|.+-...|.++++.|.+.|+
T Consensus 8 endaleqkiaalkqkiaslkq 28 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIASLKQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHhcC
Confidence 356666777888888877663
Done!