Query psy6810
Match_columns 168
No_of_seqs 130 out of 173
Neff 4.9
Searched_HMMs 13730
Date Fri Aug 16 19:00:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6810.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6810hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2clya1 f.52.1.1 (A:79-183) AT 100.0 1.6E-38 1.1E-42 236.8 12.7 90 54-143 16-105 (105)
2 d1sb8a_ c.2.1.2 (A:) UDP-N-ace 30.7 10 0.00076 28.5 1.9 34 1-36 1-44 (341)
3 d1iuya_ a.4.5.34 (A:) Cullin-3 16.3 33 0.0024 22.2 2.0 41 119-161 32-72 (92)
4 d1n7ha_ c.2.1.2 (A:) GDP-manno 15.6 38 0.0028 24.7 2.4 23 12-36 7-29 (339)
5 d1ldja1 a.4.5.34 (A:687-776) A 15.5 30 0.0022 22.4 1.6 41 119-161 30-70 (90)
6 d1ng6a_ a.182.1.1 (A:) Hypothe 15.3 1.4E+02 0.01 20.6 5.4 58 104-162 51-112 (148)
7 d2bkaa1 c.2.1.2 (A:5-236) TAT- 13.5 53 0.0039 23.1 2.6 25 12-38 20-48 (232)
8 d1e6ua_ c.2.1.2 (A:) GDP-4-ket 12.9 41 0.003 24.4 1.9 23 12-36 8-30 (315)
9 d1ldna2 d.162.1.1 (A:163-330) 11.8 83 0.006 21.0 3.2 23 145-168 144-166 (168)
10 d2z5fa_ c.37.1.5 (A:) Thyroid 11.5 23 0.0016 26.8 -0.1 38 118-157 188-225 (293)
No 1
>d2clya1 f.52.1.1 (A:79-183) ATP synthase subunit b, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00 E-value=1.6e-38 Score=236.83 Aligned_cols=90 Identities=31% Similarity=0.571 Sum_probs=89.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy6810 54 KIRTNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHM 133 (168)
Q Consensus 54 n~~R~~~i~~vk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~m 133 (168)
|++|++||++++++|+++|+++|+++++++|||++|||++|++|++||+|+++||+|||+||||||++|+++||.||+||
T Consensus 16 ~~~r~~~i~~l~~~Ie~~k~~q~~~~~~~~Lfda~kEnvalqlEa~yrerl~~v~~evK~rLDy~V~~e~~~Rr~eQ~hm 95 (105)
T d2clya1 16 EEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHM 95 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q psy6810 134 VSWVVSHVLK 143 (168)
Q Consensus 134 v~wVi~~V~k 143 (168)
++||+++|.|
T Consensus 96 v~wV~~~V~K 105 (105)
T d2clya1 96 INWVEKRVVQ 105 (105)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcC
Confidence 9999999986
No 2
>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=30.66 E-value=10 Score=28.50 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=24.9
Q ss_pred Ccchhhcccc------c----cccchhhhhhHHHHHHHHhhceeee
Q psy6810 1 MLSRFVMQHG------K----FDTIGPVSLGEPIWVSDMAKCAQVM 36 (168)
Q Consensus 1 ~~~~f~~~~~------K----TG~tGp~~lg~gl~~y~iSkEiyVi 36 (168)
|++||+.++. | ||.|| .+|.-|.-.++++..-|+
T Consensus 1 ~~~~~~~~~~~~~~~~k~iLVTG~tG--fIGs~lv~~L~~~g~~V~ 44 (341)
T d1sb8a_ 1 MMSRYEELRKELPAQPKVWLITGVAG--FIGSNLLETLLKLDQKVV 44 (341)
T ss_dssp CCCHHHHHHHHHHHSCCEEEEETTTS--HHHHHHHHHHHHTTCEEE
T ss_pred CCchHHHHHHhCCCCCCEEEEecCCC--HHHHHHHHHHHHCcCEEE
Confidence 7888887763 2 89888 678888888887754443
No 3
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.31 E-value=33 Score=22.19 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHH
Q psy6810 119 AALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDL 161 (168)
Q Consensus 119 V~~e~~~R~~eQ~~mv~wVi~~V~ksI~pk~ek~~L~qcIadl 161 (168)
||+=-..|.....+|++.|++.+.+..+|... .+.+||..|
T Consensus 32 VRIMK~~k~l~~~~L~~~v~~~l~~~F~p~~~--~iK~~Ie~L 72 (92)
T d1iuya_ 32 VRIMKSRKKMQHNVLVAEVTQQLKARFLPSPV--VIKKRIEGL 72 (92)
T ss_dssp HHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHH--HHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhCcCCCCHH--HHHHHHHHH
Confidence 44445566677789999999999988876443 677888765
No 4
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=15.62 E-value=38 Score=24.71 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=19.3
Q ss_pred cccchhhhhhHHHHHHHHhhceeee
Q psy6810 12 FDTIGPVSLGEPIWVSDMAKCAQVM 36 (168)
Q Consensus 12 TG~tGp~~lg~gl~~y~iSkEiyVi 36 (168)
||.|| .+|.-|+-+|+++..-|+
T Consensus 7 TGatG--fiG~~lv~~Ll~~g~~V~ 29 (339)
T d1n7ha_ 7 TGITG--QDGSYLTEFLLGKGYEVH 29 (339)
T ss_dssp ETTTS--HHHHHHHHHHHHTTCEEE
T ss_pred eCCcc--HHHHHHHHHHHHCcCEEE
Confidence 89998 789999999999876554
No 5
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.49 E-value=30 Score=22.41 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHH
Q psy6810 119 AALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDL 161 (168)
Q Consensus 119 V~~e~~~R~~eQ~~mv~wVi~~V~ksI~pk~ek~~L~qcIadl 161 (168)
||+=-+.|.....+|++.|++.+.+...|... .+.+||..|
T Consensus 30 VRIMK~~k~l~h~~L~~~v~~~l~~~F~p~~~--~iK~~Ie~L 70 (90)
T d1ldja1 30 VRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVP--VIKKCIDIL 70 (90)
T ss_dssp HHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHH--HHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhccCCCCHH--HHHHHHHHH
Confidence 45555667777889999999999988866433 477787765
No 6
>d1ng6a_ a.182.1.1 (A:) Hypothetical protein YqeY {Bacillus subtilis [TaxId: 1423]}
Probab=15.32 E-value=1.4e+02 Score=20.60 Aligned_cols=58 Identities=10% Similarity=0.180 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHH
Q psy6810 104 ALFAYQQVKNRLEYQAALESIQRR----ISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLK 162 (168)
Q Consensus 104 ~~~v~~EvK~rLDy~V~~e~~~R~----~eQ~~mv~wVi~~V~ksI~pk~ek~~L~qcIadle 162 (168)
+.-+..++|.|=|+-=.|+..-|. .|+.++ +.+..-..+.++...-++++.+.|+++.
T Consensus 51 ~~vi~k~vKqr~es~e~y~~~~r~dl~e~e~~Ei-~il~~yLP~~lseeEl~~~v~~~i~e~~ 112 (148)
T d1ng6a_ 51 LTVLSRELKQRKDSLQEFSNANRLDLVDKVQKEL-DILEVYLPEQLSEEELRTIVNETIAEVG 112 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHGGGSCCCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHHHccccCCHHHHHHHHHHHHHHhC
Confidence 345567888888888888776554 233333 5555556667777777778888887754
No 7
>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.54 E-value=53 Score=23.15 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=19.8
Q ss_pred cccchhhhhhHHHHHHHHhhc----eeeeec
Q psy6810 12 FDTIGPVSLGEPIWVSDMAKC----AQVMNR 38 (168)
Q Consensus 12 TG~tGp~~lg~gl~~y~iSkE----iyVin~ 38 (168)
||.|| .+|.-+.-+++++. +++++.
T Consensus 20 tGaTG--~iG~~l~~~Ll~~g~~~~v~~~~R 48 (232)
T d2bkaa1 20 LGASG--ETGRVLLKEILEQGLFSKVTLIGR 48 (232)
T ss_dssp ECTTS--HHHHHHHHHHHHHTCCSEEEEEES
T ss_pred ECCCc--HHHHHHHHHHHhCCCCCEEEEEec
Confidence 78888 57888888998876 777764
No 8
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}
Probab=12.91 E-value=41 Score=24.37 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=18.5
Q ss_pred cccchhhhhhHHHHHHHHhhceeee
Q psy6810 12 FDTIGPVSLGEPIWVSDMAKCAQVM 36 (168)
Q Consensus 12 TG~tGp~~lg~gl~~y~iSkEiyVi 36 (168)
||.|| -+|..|+-+|+.+...|+
T Consensus 8 TG~tG--fiG~~l~~~L~~~g~~vi 30 (315)
T d1e6ua_ 8 AGHRG--MVGSAIRRQLEQRGDVEL 30 (315)
T ss_dssp ETTTS--HHHHHHHHHHTTCTTEEE
T ss_pred EcCCc--HHHHHHHHHHHHCcCEEE
Confidence 88888 789999999998765544
No 9
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.82 E-value=83 Score=21.02 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=15.8
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhC
Q psy6810 145 ITPDQDKQSIKKCISDLKALAARA 168 (168)
Q Consensus 145 I~pk~ek~~L~qcIadle~La~k~ 168 (168)
|||. |++.|++|+..|+.+-.+|
T Consensus 144 Ls~~-E~~~L~~s~~~lk~~i~~a 166 (168)
T d1ldna2 144 LNDD-EKNRFHHSAATLKSVLARA 166 (168)
T ss_dssp CCHH-HHHHHHHHHHHHHHHHHHS
T ss_pred CCHH-HHHHHHHHHHHHHHHHHHH
Confidence 3554 5578888888887776654
No 10
>d2z5fa_ c.37.1.5 (A:) Thyroid hormone sulfotransferase Sult1b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.47 E-value=23 Score=26.77 Aligned_cols=38 Identities=8% Similarity=0.116 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHH
Q psy6810 118 QAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKC 157 (168)
Q Consensus 118 ~V~~e~~~R~~eQ~~mv~wVi~~V~ksI~pk~ek~~L~qc 157 (168)
.|+||.+.+..+. -+.-|.+-.--.++++.-+.+++.|
T Consensus 188 ~vrYEDL~~d~~~--~v~kI~~FLg~~~~~~~l~~iv~~~ 225 (293)
T d2z5fa_ 188 FLYYEDMKENPKE--EIKKIIRFLEKNLNDEILDRIIHHT 225 (293)
T ss_dssp EEEHHHHHHCHHH--HHHHHHHHTTCCCCHHHHHHHHHHT
T ss_pred EEehHHhhhhHHH--HHHHHHHHhhhhhhhhHHHHHHHhc
Confidence 4678887776543 2334444444566766666666554
Done!