RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6810
         (168 letters)



>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport,
           CF(0), stator, transport, acetylation, hydrogen ION
           transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
          Length = 214

 Score =  111 bits (279), Expect = 2e-31
 Identities = 41/111 (36%), Positives = 72/111 (64%)

Query: 58  NDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEY 117
              +  ++ AI+ E   Q   + +  L++ +R NI M LE  +RER    Y++VKNRL+Y
Sbjct: 98  QASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDY 157

Query: 118 QAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
             +++++ R+  Q+HM++WV   V++SI+  Q+K++I KCI+DLK L+ +A
Sbjct: 158 HISVQNMMRQKEQEHMINWVEKRVVQSISAQQEKETIAKCIADLKLLSKKA 208


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 8/27 (29%)

Query: 150 DKQSIKKCISDLK--------ALAARA 168
           +KQ++KK  + LK        ALA +A
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAIKA 44


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 30.9 bits (69), Expect = 0.15
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 73  WNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKH 132
           W +E+ K    L  A +   Q   E   ++   +  Q+   ++E          RI+ K 
Sbjct: 90  WREEQRKRLQELDAASKVMEQEWREKAKKDLEEW-NQRQSEQVEKNKI----NNRIADKA 144

Query: 133 MVS 135
              
Sbjct: 145 FYQ 147


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 2.8
 Identities = 23/176 (13%), Positives = 49/176 (27%), Gaps = 50/176 (28%)

Query: 29  MAKC------AQVMNRSVVLT-------WVMYQSHRAGKIRTNDKLASLKGAIENELWNQ 75
           +           V     V         W+           + + +  L+  +  +L  Q
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWL-----NLKNCNSPETV--LE--MLQKLLYQ 208

Query: 76  ERSKAQAVLYEAKRENIQMQLEAVFRE-RALFAYQQVKNRL------EYQAALE------ 122
                 +        NI++++ ++  E R L   +  +N L      +   A        
Sbjct: 209 IDPNWTS--RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 123 ---------SIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCI----SDLKALA 165
                     +   +S        + H   ++TPD+ K  + K +     DL    
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322


>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex,
           hydrolase/DNA complex complex; 3.00A {Sulfolobus
           solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
          Length = 500

 Score = 25.6 bits (57), Expect = 9.0
 Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 68  IENELWNQERSKAQAVLYEAKRENIQMQLEA 98
           IE  ++    +  QA +Y+A+ EN+   +++
Sbjct: 258 IETNVYC-NLTPEQAAMYKAEVENLFNNIDS 287


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.128    0.368 

Gapped
Lambda     K      H
   0.267   0.0839    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,402,332
Number of extensions: 127060
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 19
Length of query: 168
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 81
Effective length of database: 4,272,666
Effective search space: 346085946
Effective search space used: 346085946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.4 bits)