RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6810
         (168 letters)



>d2clya1 f.52.1.1 (A:79-183) ATP synthase subunit b, mitochondrial
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 105

 Score = 91.8 bits (228), Expect = 2e-25
 Identities = 28/86 (32%), Positives = 52/86 (60%)

Query: 58  NDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEY 117
              +  ++ AI+ E   Q   + +  L++ +R NI M LE  +RER    Y++VKNRL+Y
Sbjct: 20  QASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDY 79

Query: 118 QAALESIQRRISQKHMVSWVVSHVLK 143
             +++++ R+  Q+HM++WV   V++
Sbjct: 80  HISVQNMMRQKEQEHMINWVEKRVVQ 105


>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 84

 Score = 24.4 bits (53), Expect = 4.1
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 18/79 (22%)

Query: 86  EAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESI---QRRISQKHMVSWVVSHVL 142
           E   E +    E VF++R          + +  AA+  I   ++ +    +VS + + + 
Sbjct: 1   ETVEEQVSTT-ERVFQDR----------QYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK 49

Query: 143 KSITPDQDKQSIKKCISDL 161
             + P      +KK I  L
Sbjct: 50  FPVKPGD----LKKRIESL 64


>d1d8ca_ c.1.13.1 (A:) Malate synthase G {Escherichia coli [TaxId:
           562]}
          Length = 720

 Score = 24.5 bits (53), Expect = 7.4
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 87  AKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESI 124
           A+R+ IQ  L+   R         VK++  Y++ L  +
Sbjct: 53  AERDRIQAALDEWHRSNP----GPVKDKAAYKSFLREL 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.128    0.368 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 565,021
Number of extensions: 22408
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 6
Length of query: 168
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,322,926
Effective search space: 117740414
Effective search space used: 117740414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.6 bits)