Query psy6812
Match_columns 207
No_of_seqs 114 out of 408
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 19:03:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ku5_A HPHA, archaeal histon; 28.8 1.3E+02 0.0043 19.9 5.5 51 137-193 11-61 (70)
2 1b67_A Protein (histone HMFA); 15.4 2.5E+02 0.0085 18.1 5.4 50 137-192 7-56 (68)
3 3b0c_T CENP-T, centromere prot 11.4 4.6E+02 0.016 19.0 6.1 52 137-194 12-63 (111)
4 2hue_C Histone H4; mini beta s 11.0 4E+02 0.014 18.1 4.7 50 137-192 15-64 (84)
5 4a1x_C CP5-46-A peptide; hydro 10.2 74 0.0025 17.5 0.4 7 50-56 16-22 (26)
6 1taf_A TFIID TBP associated fa 10.1 4.2E+02 0.014 17.7 5.1 50 138-193 7-56 (68)
7 2e5z_A SFRS8 protein, splicing 9.2 59 0.002 23.4 -0.3 12 103-114 61-72 (90)
8 1id3_B Histone H4; nucleosome 9.1 4.8E+02 0.017 18.6 4.7 50 138-193 34-83 (102)
9 1x4o_A Splicing factor 4; stru 8.8 63 0.0022 22.3 -0.3 10 103-112 57-66 (78)
10 4e18_B Catenin alpha-1; four h 8.7 3.7E+02 0.013 17.8 3.5 30 137-166 11-40 (59)
No 1
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=28.84 E-value=1.3e+02 Score=19.87 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=39.2
Q ss_pred cHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhcccccceeeee
Q psy6812 137 LMKTLVMGLRIGICAEEEKCNKKKAIIDYLLKHIKRTLKFGFQYREVAAHKRKDIEW 193 (207)
Q Consensus 137 ~i~~l~~~~~~~~~~~e~r~~~~~~l~~yl~~~l~~h~~ya~~y~~~~~~~~~~~~~ 193 (207)
.++.|+...+....+++....-.+.+-+|+.+.++.-+.||-+ .|||.|.-
T Consensus 11 ~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~h------akRkTI~~ 61 (70)
T 1ku5_A 11 PVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARH------AGRKTVKV 61 (70)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TTCSEECH
T ss_pred HHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCcCCH
Confidence 4666776665556778888888888888888888888888877 78887753
No 2
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=15.44 E-value=2.5e+02 Score=18.12 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=33.4
Q ss_pred cHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhcccccceeee
Q psy6812 137 LMKTLVMGLRIGICAEEEKCNKKKAIIDYLLKHIKRTLKFGFQYREVAAHKRKDIE 192 (207)
Q Consensus 137 ~i~~l~~~~~~~~~~~e~r~~~~~~l~~yl~~~l~~h~~ya~~y~~~~~~~~~~~~ 192 (207)
.++.|+...+....+.+....-.+.+-.|+......-+.+|-+ .|||.|.
T Consensus 7 ~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~------~kRkTI~ 56 (68)
T 1b67_A 7 PIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKH------AGRKTIK 56 (68)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTCSEEC
T ss_pred HHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCccC
Confidence 3555665544445667777777777777777777777777766 7887664
No 3
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=11.39 E-value=4.6e+02 Score=19.00 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=38.3
Q ss_pred cHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhcccccceeeeec
Q psy6812 137 LMKTLVMGLRIGICAEEEKCNKKKAIIDYLLKHIKRTLKFGFQYREVAAHKRKDIEWE 194 (207)
Q Consensus 137 ~i~~l~~~~~~~~~~~e~r~~~~~~l~~yl~~~l~~h~~ya~~y~~~~~~~~~~~~~~ 194 (207)
.|..|........++++..+...+.+-.|+....+.-..||=+ .+||.|.-|
T Consensus 12 ~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~H------A~RKTV~~e 63 (111)
T 3b0c_T 12 LIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQH------AGRKTVEMA 63 (111)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTCSEECHH
T ss_pred HHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCcCCHH
Confidence 4566666556667788888888888888888877777777766 688877643
No 4
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=10.99 E-value=4e+02 Score=18.13 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=32.5
Q ss_pred cHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhcccccceeee
Q psy6812 137 LMKTLVMGLRIGICAEEEKCNKKKAIIDYLLKHIKRTLKFGFQYREVAAHKRKDIE 192 (207)
Q Consensus 137 ~i~~l~~~~~~~~~~~e~r~~~~~~l~~yl~~~l~~h~~ya~~y~~~~~~~~~~~~ 192 (207)
.++.|........++++..+...+.+-.|+.+..+.-..|+=+ .|||.|.
T Consensus 15 ~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~h------a~RKTvt 64 (84)
T 2hue_C 15 AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEH------AKRKTVT 64 (84)
T ss_dssp HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH------TTCSEEC
T ss_pred HHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCcCc
Confidence 3555555554445666677777777777777777766666654 6787664
No 5
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=10.23 E-value=74 Score=17.45 Aligned_cols=7 Identities=43% Similarity=1.010 Sum_probs=5.6
Q ss_pred CCeeeee
Q psy6812 50 SPIQCIV 56 (207)
Q Consensus 50 ~PI~C~~ 56 (207)
+||+|-.
T Consensus 16 dpihcd~ 22 (26)
T 4a1x_C 16 DPIHCDX 22 (26)
T ss_pred Cceeccc
Confidence 7999964
No 6
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=10.08 E-value=4.2e+02 Score=17.70 Aligned_cols=50 Identities=8% Similarity=0.147 Sum_probs=36.2
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhcccccceeeee
Q psy6812 138 MKTLVMGLRIGICAEEEKCNKKKAIIDYLLKHIKRTLKFGFQYREVAAHKRKDIEW 193 (207)
Q Consensus 138 i~~l~~~~~~~~~~~e~r~~~~~~l~~yl~~~l~~h~~ya~~y~~~~~~~~~~~~~ 193 (207)
+..|+..++....+++....-.+.+-+|..+.+..-..||=+ -+||.|+-
T Consensus 7 i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~H------Agrktv~~ 56 (68)
T 1taf_A 7 IMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANH------ARKKTIDL 56 (68)
T ss_dssp HHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTCSSBCH
T ss_pred HHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCCCCH
Confidence 456677777777777787888888888888888888777754 35665543
No 7
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=9.19 E-value=59 Score=23.36 Aligned_cols=12 Identities=25% Similarity=0.650 Sum_probs=8.9
Q ss_pred cceeeehhHHHH
Q psy6812 103 KKYYSYYQWVCF 114 (207)
Q Consensus 103 ~~~~~YYQWVpf 114 (207)
..++.||+|--.
T Consensus 61 ~pyh~YY~~kl~ 72 (90)
T 2e5z_A 61 HQYNAYYEFKKQ 72 (90)
T ss_dssp CSTHHHHHHHHH
T ss_pred CcccHHHHHHHH
Confidence 347999999643
No 8
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=9.13 E-value=4.8e+02 Score=18.55 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=31.9
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhcccccceeeee
Q psy6812 138 MKTLVMGLRIGICAEEEKCNKKKAIIDYLLKHIKRTLKFGFQYREVAAHKRKDIEW 193 (207)
Q Consensus 138 i~~l~~~~~~~~~~~e~r~~~~~~l~~yl~~~l~~h~~ya~~y~~~~~~~~~~~~~ 193 (207)
|+.|........++++..+...+.+-.|+.+..+.-..|+=+ .+||.|.-
T Consensus 34 I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~H------akRKTVt~ 83 (102)
T 1id3_B 34 IRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEH------AKRKTVTS 83 (102)
T ss_dssp HHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH------TTCSEECH
T ss_pred HHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCcCcH
Confidence 455555544444566677777777777777777766666654 67876653
No 9
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=8.78 E-value=63 Score=22.26 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=8.3
Q ss_pred cceeeehhHH
Q psy6812 103 KKYYSYYQWV 112 (207)
Q Consensus 103 ~~~~~YYQWV 112 (207)
..++.||+|-
T Consensus 57 ~~~h~YYr~k 66 (78)
T 1x4o_A 57 SQGYRYYRQK 66 (78)
T ss_dssp SSHHHHHHHH
T ss_pred CCCcHHHHHH
Confidence 4589999996
No 10
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=8.69 E-value=3.7e+02 Score=17.82 Aligned_cols=30 Identities=7% Similarity=0.184 Sum_probs=10.0
Q ss_pred cHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Q psy6812 137 LMKTLVMGLRIGICAEEEKCNKKKAIIDYL 166 (207)
Q Consensus 137 ~i~~l~~~~~~~~~~~e~r~~~~~~l~~yl 166 (207)
++..|+.++.....++-+|+.+.+.|+.-.
T Consensus 11 ~le~Iisgaa~~Ads~~tr~~rke~Iv~eC 40 (59)
T 4e18_B 11 RLESIISGAALMADSSCTRDDRRERIVAEC 40 (59)
T ss_dssp HHHHHHHHCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 356666664332222333444444444433
Done!