Query psy6812
Match_columns 207
No_of_seqs 114 out of 408
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 19:03:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6812.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6812hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rxta1 d.108.1.2 (A:78-218) N 22.2 18 0.0013 26.5 1.7 30 4-33 14-43 (141)
2 d1iyka1 d.108.1.2 (A:60-224) N 19.6 22 0.0016 26.6 1.8 30 5-34 37-66 (165)
3 d1htaa_ a.22.1.2 (A:) Archaeal 18.3 98 0.0071 18.5 5.9 50 137-192 8-57 (68)
4 d1ku5a_ a.22.1.2 (A:) Archaeal 14.4 1.3E+02 0.0091 18.0 5.3 50 137-192 7-56 (66)
5 d1iica1 d.108.1.2 (A:34-218) N 13.8 34 0.0025 25.8 1.6 30 5-34 59-88 (185)
6 d1f1ea_ a.22.1.2 (A:) Archaeal 12.1 1.8E+02 0.013 20.3 5.4 50 137-192 84-133 (151)
7 d1vpsa_ b.121.6.1 (A:) Polyoma 8.7 35 0.0025 27.4 -0.0 10 51-60 192-201 (285)
8 d1sva1_ b.121.6.1 (1:) Polyoma 8.3 31 0.0023 28.4 -0.4 10 51-60 191-200 (348)
9 d2huec1 a.22.1.1 (C:20-101) Hi 7.7 2.6E+02 0.019 17.4 4.7 50 137-192 14-63 (82)
10 d1rkba_ c.37.1.1 (A:) Adenylat 7.3 1.8E+02 0.013 18.8 3.6 26 150-175 148-173 (173)
No 1
>d1rxta1 d.108.1.2 (A:78-218) N-myristoyl transferase, NMT {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.17 E-value=18 Score=26.48 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=23.9
Q ss_pred hHHHHHhhhcccccccCcceeeeehhhHHH
Q psy6812 4 LLGGLKEYLKWQEITTDSTIFRLHNLFTTA 33 (207)
Q Consensus 4 ~~~~L~~~l~~~~~~~Dd~vdRL~y~~Tv~ 33 (207)
.+..+-++|.-+.+.+||..||++|.--.+
T Consensus 14 ~~~el~~lL~~nYVeddd~~frf~Ys~efl 43 (141)
T d1rxta1 14 VLKELYTLLNENYVEDDDNMFRFDYSPEFL 43 (141)
T ss_dssp HHHHHHHHHHTSSCCCCSSCCCBCCCHHHH
T ss_pred HHHHHHHHHHHhcccCCCceEEEEeCHHHc
Confidence 356677888778899999999999876543
No 2
>d1iyka1 d.108.1.2 (A:60-224) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]}
Probab=19.56 E-value=22 Score=26.64 Aligned_cols=30 Identities=17% Similarity=0.061 Sum_probs=23.8
Q ss_pred HHHHHhhhcccccccCcceeeeehhhHHHH
Q psy6812 5 LGGLKEYLKWQEITTDSTIFRLHNLFTTAL 34 (207)
Q Consensus 5 ~~~L~~~l~~~~~~~Dd~vdRL~y~~Tv~i 34 (207)
+..+-.+|.-+.+.+||..||++|.--.+-
T Consensus 37 l~ely~lL~~nYVeDdd~~frf~YS~efL~ 66 (165)
T d1iyka1 37 LDELYKLLYDNYVEDIDATFRFKYSHEFFQ 66 (165)
T ss_dssp HHHHHHHHHHHSCBCTTSSEEECCCHHHHH
T ss_pred HHHHHHHHHhhcccCccceEEEecCHHHhh
Confidence 456777887788999999999999865443
No 3
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=18.29 E-value=98 Score=18.54 Aligned_cols=50 Identities=10% Similarity=0.119 Sum_probs=31.2
Q ss_pred cHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhcccccceeee
Q psy6812 137 LMKTLVMGLRIGICAEEEKCNKKKAIIDYLLKHIKRTLKFGFQYREVAAHKRKDIE 192 (207)
Q Consensus 137 ~i~~l~~~~~~~~~~~e~r~~~~~~l~~yl~~~l~~h~~ya~~y~~~~~~~~~~~~ 192 (207)
+++.|+.......++.|....-.+.+-.|+......-+.++-+ +|||.|.
T Consensus 8 ~I~ri~k~~~~~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~~------~kRkTi~ 57 (68)
T d1htaa_ 8 PIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKH------AGRKTIK 57 (68)
T ss_dssp HHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTCSSCC
T ss_pred HHHHHHHHCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCcCC
Confidence 4566666544455777776666666556666656665656555 7888764
No 4
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=14.35 E-value=1.3e+02 Score=17.96 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=31.5
Q ss_pred cHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhcccccceeee
Q psy6812 137 LMKTLVMGLRIGICAEEEKCNKKKAIIDYLLKHIKRTLKFGFQYREVAAHKRKDIE 192 (207)
Q Consensus 137 ~i~~l~~~~~~~~~~~e~r~~~~~~l~~yl~~~l~~h~~ya~~y~~~~~~~~~~~~ 192 (207)
+|+.|+.......++.|....-.+.+-.|+......-+.++=+ .+||-|.
T Consensus 7 ~I~rI~k~~~~~ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~------~~RKTI~ 56 (66)
T d1ku5a_ 7 PVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARH------AGRKTVK 56 (66)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TTCSEEC
T ss_pred HHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCCCC
Confidence 4566665433334666777666666666666666666666655 7888775
No 5
>d1iica1 d.108.1.2 (A:34-218) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.83 E-value=34 Score=25.78 Aligned_cols=30 Identities=13% Similarity=-0.009 Sum_probs=23.8
Q ss_pred HHHHHhhhcccccccCcceeeeehhhHHHH
Q psy6812 5 LGGLKEYLKWQEITTDSTIFRLHNLFTTAL 34 (207)
Q Consensus 5 ~~~L~~~l~~~~~~~Dd~vdRL~y~~Tv~i 34 (207)
+..+-++|+-+.+.+||..||.+|.-..+-
T Consensus 59 l~el~~lL~~nYved~d~~frf~Ys~~~l~ 88 (185)
T d1iica1 59 LEDVFVLLNENYVEDRDAGFRFNYTKEFFN 88 (185)
T ss_dssp HHHHHHHHHHHSSSCGGGCEEECCCHHHHH
T ss_pred HHHHHHHHHhhccccccceEEeecCHHHhe
Confidence 456777888788999999999998866543
No 6
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=12.10 E-value=1.8e+02 Score=20.31 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=36.6
Q ss_pred cHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhcccccceeee
Q psy6812 137 LMKTLVMGLRIGICAEEEKCNKKKAIIDYLLKHIKRTLKFGFQYREVAAHKRKDIE 192 (207)
Q Consensus 137 ~i~~l~~~~~~~~~~~e~r~~~~~~l~~yl~~~l~~h~~ya~~y~~~~~~~~~~~~ 192 (207)
.++.|+...+...++.|....-.+.+-.|+.+.+..-..+|-+ .|||.|.
T Consensus 84 ~IkRi~k~~g~~ris~dA~~~l~~~~E~fi~~l~~~A~~~a~~------~kRkTI~ 133 (151)
T d1f1ea_ 84 TVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADE------DGRKTVQ 133 (151)
T ss_dssp HHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTCSEEC
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCcCC
Confidence 5777777666556777777777777777777777777778777 8888775
No 7
>d1vpsa_ b.121.6.1 (A:) Polyomavirus coat proteins {Murine polyomavirus, strain small-plaque 16 [TaxId: 10634]}
Probab=8.67 E-value=35 Score=27.43 Aligned_cols=10 Identities=10% Similarity=0.159 Sum_probs=8.2
Q ss_pred CeeeeeCCCC
Q psy6812 51 PIQCIVNGLP 60 (207)
Q Consensus 51 PI~C~~~~~~ 60 (207)
||+||+|+..
T Consensus 192 pvE~W~PDPS 201 (285)
T d1vpsa_ 192 PVEIWHPDPA 201 (285)
T ss_dssp BTTTEEECTT
T ss_pred eeEeECCCCC
Confidence 9999997654
No 8
>d1sva1_ b.121.6.1 (1:) Polyomavirus coat proteins {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=8.30 E-value=31 Score=28.38 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=8.1
Q ss_pred CeeeeeCCCC
Q psy6812 51 PIQCIVNGLP 60 (207)
Q Consensus 51 PI~C~~~~~~ 60 (207)
||+||+|+..
T Consensus 191 pvE~W~PDPS 200 (348)
T d1sva1_ 191 PVECWVPDPS 200 (348)
T ss_dssp BGGGEEECTT
T ss_pred eeeeECCCCC
Confidence 9999997653
No 9
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=7.68 E-value=2.6e+02 Score=17.42 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=29.0
Q ss_pred cHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhcccccceeee
Q psy6812 137 LMKTLVMGLRIGICAEEEKCNKKKAIIDYLLKHIKRTLKFGFQYREVAAHKRKDIE 192 (207)
Q Consensus 137 ~i~~l~~~~~~~~~~~e~r~~~~~~l~~yl~~~l~~h~~ya~~y~~~~~~~~~~~~ 192 (207)
.++.|...+....++++.-+.-.+.+-.++.+..+.--.|+=+ .+||.|.
T Consensus 14 ~i~Riar~~Gv~ris~d~~~~l~~~l~~~l~~i~~~a~~~~~h------akRKTvt 63 (82)
T d2huec1 14 AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEH------AKRKTVT 63 (82)
T ss_dssp HHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH------TTCSEEC
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCcCC
Confidence 4566666555555666665555555566666555554445433 5777664
No 10
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=7.33 E-value=1.8e+02 Score=18.82 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6812 150 CAEEEKCNKKKAIIDYLLKHIKRTLK 175 (207)
Q Consensus 150 ~~~e~r~~~~~~l~~yl~~~l~~h~~ 175 (207)
.+.++..+.++.+.+++...++.||.
T Consensus 148 ~~~~~~~~~i~~Ii~~i~~~~k~~~s 173 (173)
T d1rkba_ 148 NKPEELENNVDQILKWIEQWIKDHNS 173 (173)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35677788899999999999988874
Done!