RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6812
(207 letters)
>gnl|CDD|216168 pfam00876, Innexin, Innexin. This family includes the drosophila
proteins Ogre and shaking-B, and the C. elegans proteins
Unc-7 and Unc-9. Members of this family are integral
membrane proteins which are involved in the formation of
gap junctions. This family has been named the Innexins.
Length = 341
Score = 162 bits (411), Expect = 7e-49
Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 16/161 (9%)
Query: 20 DSTIFRLHNLFTTALLLTCSLIITATQYVGSPIQCIV----NGLPAHPINTYCWIMSTFT 75
D + RLH +T +LL SL+++A QY G PI+C V G N YCW+ +T+
Sbjct: 1 DDFVDRLHYKYTVIILLAFSLLVSAKQYFGDPIECWVPAEFPGSWEEYANNYCWVQNTYF 60
Query: 76 MPDAFQRQVGVEVAHPGVANDFGDEDAKKYYSYYQWVCFVLFFQGIMCYTPKWIW---DN 132
+P +G EV D E +KY +YYQWV FVLF Q ++ Y P +IW +
Sbjct: 61 LP------LGEEVPGTDPEED--RERERKYITYYQWVPFVLFLQALLFYIPHYIWKLLSS 112
Query: 133 FEGGLMKTLVMGLRIGICAE-EEKCNKKKAIIDYLLKHIKR 172
+EGG +K LV L I +E +E+ + K + YL ++
Sbjct: 113 WEGGRLKALVDELNSAILSEPDERKKRIKPLARYLDDNLHS 153
>gnl|CDD|165115 PHA02748, PHA02748, viral inexin-like protein; Provisional.
Length = 360
Score = 133 bits (338), Expect = 7e-38
Identities = 63/171 (36%), Positives = 91/171 (53%), Gaps = 1/171 (0%)
Query: 1 MLKLLGGLKEYLKWQEITTDSTIFRLHNLFTTALLLTCSLIITATQYVGSPIQCIVNGLP 60
ML L L+ LK Q ++ D+ FRLH T +LL SL++T+ QY G PI C P
Sbjct: 1 MLDLFSALRGLLKVQSVSIDNNFFRLHYKITVIILLAFSLLVTSRQYFGDPIDCDFPDYP 60
Query: 61 AHPINTYCWIMSTFTMPDAFQRQVGVEVAHPGVANDFGDEDAKKYYSYYQWVCFVLFFQG 120
+NTYC++ STF + V V PGV+ D +ED +YY YYQWV LF Q
Sbjct: 61 NGSLNTYCYVQSTFLVERKVTHTVNSTVPDPGVSGD-TEEDELRYYGYYQWVFITLFLQA 119
Query: 121 IMCYTPKWIWDNFEGGLMKTLVMGLRIGICAEEEKCNKKKAIIDYLLKHIK 171
+ Y P +IW +EGG MK L + L + +++ + ++DY ++
Sbjct: 120 VFFYIPHYIWKAWEGGKMKMLAVELASPVLSKDCIEKNTQPLVDYFFMNLH 170
>gnl|CDD|218274 pfam04801, Sin_N, Sin-like protein conserved region. Family of
higher eukaryotic proteins. SIN was identified as a
protein that interacts specifically with SXL (sex
lethal) in a yeast two-hybrid assay. The interaction is
mediated by one of the SXL RNA binding domains.
Length = 422
Score = 32.8 bits (75), Expect = 0.10
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 6/83 (7%)
Query: 12 LKWQEITTDSTIFRLHNLFTTALLLTCSLIITATQYVGSPIQC---IVNGLPAHPINTYC 68
LK+ + L +T SL ++ +Y+ I + A P
Sbjct: 204 LKYHGKKDSESELERQKLTSTNASTDVSLQMSPREYLDMLIPPGKDEEVVISAGPSEVLS 263
Query: 69 WIMSTF-TMPDAFQRQVGVEVAH 90
+ ++P Q +V ++
Sbjct: 264 --KAQLKSLPLLDQLKVLLKKGK 284
>gnl|CDD|236007 PRK07379, PRK07379, coproporphyrinogen III oxidase; Provisional.
Length = 400
Score = 30.7 bits (70), Expect = 0.48
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 103 KKYYSYYQWVCFVLFFQGIMCYTPKWIWDNFEGGLMKTLVMGLR----IGICAEEEKCNK 158
+ YYQWV ++ G++ P D L++TL++GLR + + A E+ K
Sbjct: 292 RTRKEYYQWVEALIANGGLIDGEPSSPEDE----LLETLMLGLRLAEGVSLSALTERFGK 347
Query: 159 KK--AIIDYLLKHIKR 172
+ I+ L + ++
Sbjct: 348 EIVEQILQCLQPYFQQ 363
>gnl|CDD|132189 TIGR03145, cyt_nit_nrfE, cytochrome c nitrate reductase biogenesis
protein NrfE. Members of this protein family closely
resemble the CcmF protein of the CcmABCDEFGH system, or
system I, for c-type cytochrome biogenesis
(GenProp0678). Members are found, as a rule, next to
closely related paralogs of CcmG and CcmH and always
located near other genes associated with the cytochrome
c nitrite reductase enzyme complex. As a rule, members
are found in species that also encode bona fide members
of the CcmF, CcmG, and CcmH families.
Length = 628
Score = 28.2 bits (63), Expect = 3.8
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 1 MLKLLGGLKEYLKWQEITTDSTIFRLHNLFTTALLLTCSLIITATQYV-GSPIQCIVNGL 59
+L L GL L+WQ + I R+ L AL+L I + Q G L
Sbjct: 400 LLMALMGLAPLLRWQNLAKTLFIQRMWLLLP-ALILAYIGIWLSLQANSGLRFNLFALVL 458
Query: 60 PAHPINTYCWIM-STFTMPDAF----QRQVGVEVAHPGVA 94
+ I W++ ST P RQ+G+ +AH GVA
Sbjct: 459 LSLAI----WLILSTLWQPWRQRTLKLRQLGMVLAHLGVA 494
>gnl|CDD|222789 PHA00428, PHA00428, tail tubular protein A.
Length = 193
Score = 27.3 bits (61), Expect = 4.7
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 15/68 (22%)
Query: 42 ITATQYVGSPIQ-CIVNGLPAHPINTYCWIMSTFT-MPDAFQRQVGVEVAHPGVANDFGD 99
T T GSP+ IV ++ F MP+ F+ + + A FG
Sbjct: 100 STGTDRFGSPVTVRIV-------------LLRPFDEMPECFRYYIVTKAARQFYTRFFGA 146
Query: 100 EDAKKYYS 107
++ + +
Sbjct: 147 DEIYQVLA 154
>gnl|CDD|216094 pfam00747, Viral_DNA_bp, ssDNA binding protein. This protein is
found in herpesviruses and is needed for replication.
Length = 1111
Score = 27.7 bits (62), Expect = 5.4
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 12/73 (16%)
Query: 24 FRLHNLFTTALLLTCSLIITATQYVGSPIQCIVNGLPAHPINTYC--WIMSTFTMPDAFQ 81
+ HN L C +QY+ S + + +P W F +
Sbjct: 860 YYFHNKI----LKYCGH----SQYLISLLTLTIRLTRQNPAQFPVVLWDRPKFASVAEYA 911
Query: 82 RQVGVEVA--HPG 92
V A P
Sbjct: 912 AHVKKLKADGVPA 924
>gnl|CDD|188493 TIGR03978, rSAM_paired_1, His-Xaa-Ser system radical SAM maturase
HxsB. This model describes the upstream member, HxsB,
of a pair of uncharacterized radical SAM proteins,
regularly found in the context of a small protein with
four or more repeats of the tripeptide His-Xaa-Ser
(HXS). This enzyme appears to be part of a peptide
modification system.
Length = 466
Score = 27.6 bits (62), Expect = 5.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 147 IGICAEEEKCNKKKAIIDYLLKHIK 171
IG E C + K I DYL + +
Sbjct: 428 IGHKPLSEFCQRHKGIFDYLFELLY 452
>gnl|CDD|218719 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely related
to pfam00931.
Length = 165
Score = 26.5 bits (59), Expect = 7.0
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 2 LKLLGGLKEYLKW---QEITTDSTIFRLHNLFTTALLLTCSLIITAT 45
L +L GL E L Q + L +L LL SL++T+
Sbjct: 82 LLILDGLDE-LASDLGQLDGPCPVLTLLSSLLRKKLLPGASLLLTSR 127
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 27.2 bits (60), Expect = 7.0
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 146 RIGICAEEEKCNKKKAIIDYLLKHIKRTLKFGFQYREVAAHKRKDIEW 193
+I E EK I D +HI+R ++ G RE+AA ++EW
Sbjct: 126 QIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAA----ELEW 169
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.460
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,703,541
Number of extensions: 983436
Number of successful extensions: 1051
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1046
Number of HSP's successfully gapped: 14
Length of query: 207
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 115
Effective length of database: 6,857,034
Effective search space: 788558910
Effective search space used: 788558910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.7 bits)