RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6812
         (207 letters)



>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
           N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 91

 Score = 25.7 bits (55), Expect = 1.7
 Identities = 7/54 (12%), Positives = 12/54 (22%)

Query: 52  IQCIVNGLPAHPINTYCWIMSTFTMPDAFQRQVGVEVAHPGVANDFGDEDAKKY 105
           + C V G+    I           +   +                    DA +Y
Sbjct: 16  LNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 69


>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 100

 Score = 26.0 bits (56), Expect = 1.7
 Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 41  IITATQYVGSPI--QCIVNGLPAHPINTYCWIMSTFTMPDAFQRQVGVEVAHPGVANDFG 98
           I+ AT  +G  +   C  +G P   ++            +  ++ +  + +      +  
Sbjct: 12  IVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVD 71

Query: 99  DEDAKKY 105
             D  +Y
Sbjct: 72  KNDEAEY 78


>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces
           clavuligerus [TaxId: 1901]}
          Length = 299

 Score = 26.9 bits (58), Expect = 1.7
 Identities = 15/137 (10%), Positives = 29/137 (21%), Gaps = 20/137 (14%)

Query: 62  HPINTYCWIMSTFTMPDAFQRQVGVEVAHPGVANDFGDEDAKKYYSYYQWVCFVLFFQGI 121
               +    +  + +P     +         +     D      +   +           
Sbjct: 105 WASESVDPDIIEYLLPLTALYRALDGPERRILTGYGADIPLGGMHREDRLPALDTVLAHD 164

Query: 122 MCYTPKW------------------IWDNFEGGLMKTLVMGLRIGICAEEEKCNKKKAII 163
           M                         WD     L+ +L  GL+       +K   + A+ 
Sbjct: 165 MATFDGLNEMSPVLSTLAGHWTTHPYWDREVLDLLVSLEAGLKR--RHGRDKWVLRAAMA 222

Query: 164 DYLLKHIKRTLKFGFQY 180
           D L        K G   
Sbjct: 223 DALPAETVNRPKLGVHE 239


>d2fkla1 d.230.3.1 (A:126-189) Amyloid beta a4 protein copper
          binding domain (domain 2) {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 64

 Score = 24.7 bits (54), Expect = 2.1
 Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 9  KEYLKWQEITTDSTIFRLHNLFTTALLLTCSL-IITATQYVGSPI 52
          + +L W  +  ++   +  NL    +LL C +      ++V  P+
Sbjct: 20 ETHLHWHTVAKETCSEKSTNLHDYGMLLPCGIDKFRGVEFVCCPL 64


>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 105

 Score = 25.1 bits (55), Expect = 3.0
 Identities = 6/23 (26%), Positives = 13/23 (56%)

Query: 153 EEKCNKKKAIIDYLLKHIKRTLK 175
           ++K    K I  Y+++ ++ TL 
Sbjct: 68  KDKAGPHKEIYPYVIQELRPTLN 90


>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's
           yeast (Saccharomyces cerevisiae), cytosolic form [TaxId:
           4932]}
          Length = 412

 Score = 25.7 bits (55), Expect = 4.5
 Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 6/36 (16%)

Query: 141 LVMGLRIGICAEEEKCNKKKAIIDYLLKHIKRTLKF 176
           LV   R  I    +        ++Y+ K I   ++F
Sbjct: 381 LVASGRASIAGLNQGN------VEYVAKAIDEVVRF 410


>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn
           (Zea mays) [TaxId: 4577]}
          Length = 114

 Score = 24.7 bits (53), Expect = 4.9
 Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 1/77 (1%)

Query: 73  TFTMPDAFQRQVGVEVAHPGVANDFGDEDAKKYYSYYQWVCFVLFFQ-GIMCYTPKWIWD 131
            F++P   Q        H  V      +   + Y+    V  +  F   +  Y       
Sbjct: 21  RFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVYFKNEHPK 80

Query: 132 NFEGGLMKTLVMGLRIG 148
              GGLM   +  L +G
Sbjct: 81  FPNGGLMTQYLDSLPVG 97


>d2exha2 b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal domain
           {Geobacillus stearothermophilus [TaxId: 1422]}
          Length = 322

 Score = 25.3 bits (54), Expect = 5.6
 Identities = 10/65 (15%), Positives = 17/65 (26%)

Query: 67  YCWIMSTFTMPDAFQRQVGVEVAHPGVANDFGDEDAKKYYSYYQWVCFVLFFQGIMCYTP 126
               + T    D          +     + F DED +KY     W   V           
Sbjct: 100 GHNYLVTCDTIDGAWSDPIYLNSSGFDPSLFHDEDGRKYLVNMYWDHRVDHHPFYGIVLQ 159

Query: 127 KWIWD 131
           ++  +
Sbjct: 160 EYSVE 164


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.460 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 846,885
Number of extensions: 39543
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 9
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.6 bits)