BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6813
(758 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQY|C Chain C, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
pdb|4DQY|F Chain F, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
Length = 506
Score = 344 bits (882), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 189/423 (44%), Positives = 254/423 (60%), Gaps = 55/423 (13%)
Query: 338 LDVKY-EDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLG 396
L++ Y +D KK+ V P + L KPV L++++FD ++M + EYE+D+ +MPLG
Sbjct: 125 LEIDYGQDEEAVKKLTVNP-GTKSKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLG 183
Query: 397 KLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNK 456
KLS + + YSIL+EV + + + D IL L+N FYT IPH FG+ PPLL+N
Sbjct: 184 KLSKRQIQAAYSILSEVQQAVSQGSS----DSQILDLSNRFYTLIPHDFGMKKPPLLNNA 239
Query: 457 QLVVQKMEMIDAMTQIELAYTIKQEGPS-AGVHPLVNCYEKLQANIKSVDTSHPHYEIIH 515
V K EM+D + IE+AY++ + G + P+ YEKL+ +IK VD EII
Sbjct: 240 DSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIR 299
Query: 516 KYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISK 575
KYV+NTHA TH Y L + IF++ R GE +R+KPF++L N+ LLWHGSR TNFA I+S+
Sbjct: 300 KYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQ 359
Query: 576 GLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMF 635
GL IAPPEAPVTGYMFGKGIYFAD VSKSANYC T+ + +GL+LL EVAL
Sbjct: 360 GLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVAL--------- 410
Query: 636 GKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQ 695
G + + A ++KLP G HSV+G
Sbjct: 411 -----------------------------------GNMYELKHASHISKLPKGKHSVKGL 435
Query: 696 GRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRF 755
G+ PDP +I LD + VPLGT I + SLLYNE+IVYD AQV ++Y+LK++F
Sbjct: 436 GKTTPDPSANISLD-GVDVPLGTGIS---SGVNDTSLLYNEYIVYDIAQVNLKYLLKLKF 491
Query: 756 NYK 758
N+K
Sbjct: 492 NFK 494
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 136/275 (49%), Gaps = 25/275 (9%)
Query: 67 VKLQIKDGLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHK 126
+KL +K G AVDPDSGL + +++ + +A +G D+ G NS+YKLQ+L+ +
Sbjct: 7 MKLTLKGGAAVDPDSGLEHSAHVLEK-GGKVFSATLGLVDIVKGTNSYYKLQLLEDD-KE 64
Query: 127 EKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGNTSGKDAKQKLTASILR 186
+Y++FR+WGR+GT IG K++ E A + F + +E++TGN K
Sbjct: 65 NRYWIFRSWGRVGTVIGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWHSKNFTKYPKKFYP 124
Query: 187 LGGDTVSDVRSHVXXXXXXXXXVENMEEGGKGARAMEELKEYGIHVVPSKFIKDAANGKV 246
L D D + N K + +++L I ++ F ++ +
Sbjct: 125 LEIDYGQDEEA-------VKKLTVNPGTKSKLPKPVQDL----IKMI---FDVESMKKAM 170
Query: 247 LELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIP 306
+E + P G S + + YSIL+EV + + + D IL L+N FYT IP
Sbjct: 171 VEYEIDLQKMPLGK-LSKRQIQAAYSILSEVQQAVSQGSS----DSQILDLSNRFYTLIP 225
Query: 307 HSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVK 341
H FG+ PPLL+N V K EM+D LLD++
Sbjct: 226 HDFGMKKPPLLNNADSVQAKAEMLD----NLLDIE 256
>pdb|1UK0|A Chain A, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase With A Novel Inhibitor
pdb|1UK0|B Chain B, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase With A Novel Inhibitor
pdb|1UK1|A Chain A, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase
Complexed With A Potent Inhibitor
pdb|1UK1|B Chain B, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase
Complexed With A Potent Inhibitor
pdb|1WOK|A Chain A, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase Complexed With A Quinoxaline-Type
Inhibitor
pdb|1WOK|B Chain B, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase Complexed With A Quinoxaline-Type
Inhibitor
pdb|1WOK|C Chain C, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase Complexed With A Quinoxaline-Type
Inhibitor
pdb|1WOK|D Chain D, Crystal Structure Of Catalytic Domain Of Human Poly(Adp-
Ribose) Polymerase Complexed With A Quinoxaline-Type
Inhibitor
pdb|2RCW|A Chain A, Parp Complexed With A620223
Length = 350
Score = 340 bits (871), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 182/401 (45%), Positives = 244/401 (60%), Gaps = 53/401 (13%)
Query: 359 ECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLD 418
+ L KPV L++++FD ++M + EYE+D+ +MPLGKLS + + YSIL+EV +
Sbjct: 1 KSKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVS 60
Query: 419 RNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTI 478
+ + D IL L+N FYT IPH FG+ PPLL+N V K+EM+D + IE+AY++
Sbjct: 61 QGSS----DSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAKVEMLDNLLDIEVAYSL 116
Query: 479 KQEGPS-AGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIF 537
+ G + P+ YEKL+ +IK VD EII KYV+NTHA TH Y L + IF
Sbjct: 117 LRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIF 176
Query: 538 EVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYF 597
++ R GE +R+KPF++L N+ LLWHGSR TNFA I+S+GL IAPPEAPVTGYMFGKGIYF
Sbjct: 177 KIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYF 236
Query: 598 ADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNST 657
AD VSKSANYC T+ + +GL+LL EVAL
Sbjct: 237 ADMVSKSANYCHTSQGDPIGLILLGEVAL------------------------------- 265
Query: 658 NNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLG 717
G + + A ++KLP G HSV+G G+ PDP +I LD + VPLG
Sbjct: 266 -------------GNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANISLD-GVDVPLG 311
Query: 718 TLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK 758
T I + SLLYNE+IVYD AQV ++Y+LK++FN+K
Sbjct: 312 TGIS---SGVNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 349
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Query: 263 SAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQL 322
S + + YSIL+EV + + + D IL L+N FYT IPH FG+ PPLL+N
Sbjct: 41 SKRQIQAAYSILSEVQQAVSQGSS----DSQILDLSNRFYTLIPHDFGMKKPPLLNNADS 96
Query: 323 VVQKMEMIDAMTQKLLDVK 341
V K+EM+D LLD++
Sbjct: 97 VQAKVEMLD----NLLDIE 111
>pdb|2RD6|A Chain A, Parp Complexed With A861695
pdb|3GJW|A Chain A, Parp Complexed With A968427
pdb|3GN7|A Chain A, Parp Complexed With A861696
pdb|3L3M|A Chain A, Parp Complexed With A927929
pdb|3L3L|A Chain A, Parp Complexed With A906894
Length = 350
Score = 339 bits (870), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 182/401 (45%), Positives = 243/401 (60%), Gaps = 53/401 (13%)
Query: 359 ECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLD 418
+ L KPV L++++FD ++M + EYE+D+ +MPLGKLS + + YSIL+EV +
Sbjct: 1 KSKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVS 60
Query: 419 RNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTI 478
+ + D IL L+N FYT IPH FG+ PPLL+N V K EM+D + IE+AY++
Sbjct: 61 QGSS----DSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAKAEMLDNLLDIEVAYSL 116
Query: 479 KQEGPS-AGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIF 537
+ G + P+ YEKL+ +IK VD EII KYV+NTHA TH Y L + IF
Sbjct: 117 LRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIF 176
Query: 538 EVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYF 597
++ R GE +R+KPF++L N+ LLWHGSR TNFA I+S+GL IAPPEAPVTGYMFGKGIYF
Sbjct: 177 KIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYF 236
Query: 598 ADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNST 657
AD VSKSANYC T+ + +GL+LL EVAL
Sbjct: 237 ADMVSKSANYCHTSQGDPIGLILLGEVAL------------------------------- 265
Query: 658 NNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLG 717
G + + A ++KLP G HSV+G G+ PDP +I LD + VPLG
Sbjct: 266 -------------GNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANISLD-GVDVPLG 311
Query: 718 TLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK 758
T I + SLLYNE+IVYD AQV ++Y+LK++FN+K
Sbjct: 312 TGIS---SGVNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 349
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 263 SAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQL 322
S + + YSIL+EV + + + D IL L+N FYT IPH FG+ PPLL+N
Sbjct: 41 SKRQIQAAYSILSEVQQAVSQGSS----DSQILDLSNRFYTLIPHDFGMKKPPLLNNADS 96
Query: 323 VVQKMEMIDAMTQKLLDVK 341
V K EM+D LLD++
Sbjct: 97 VQAKAEMLD----NLLDIE 111
>pdb|1EFY|A Chain A, Crystal Structure Of The Catalytic Fragment Of Poly (Adp-
Ribose) Polymerase Complexed With A Benzimidazole
Inhibitor
Length = 350
Score = 323 bits (827), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 180/402 (44%), Positives = 246/402 (61%), Gaps = 55/402 (13%)
Query: 359 ECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVI-SVL 417
+ L KP+ L++++FD ++M + E+E+D+ +MPLGKLS + + YSILNEV +V
Sbjct: 1 KSKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVS 60
Query: 418 DRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYT 477
D +E+ IL L+N FYT IPH FG+ PPLL N + + K++M+D + IE+AY+
Sbjct: 61 DGGSESQ-----ILDLSNRFYTLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLLDIEVAYS 115
Query: 478 IKQEGPSAG-VHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAI 536
+ + G G P+ YEKL+ +IK VD +II +YV+NTHA TH Y L + I
Sbjct: 116 LLRGGNEDGDKDPIDINYEKLRTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEI 175
Query: 537 FEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIY 596
F + R GE +R+KPF++L N+ LLWHGSR TNFA I+S+GL IAPPEAPVTGYMFGKGIY
Sbjct: 176 FRIEREGESQRYKPFKQLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIY 235
Query: 597 FADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNS 656
FAD VSKSANYC T+ + +GL+LL EVALG + Y + N+
Sbjct: 236 FADMVSKSANYCHTSQADPIGLILLGEVALGNM---------------------YELKNA 274
Query: 657 TNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPL 716
++ +TKLP G HSV+G G+ PDP + LD + VPL
Sbjct: 275 SH-----------------------ITKLPKGKHSVKGLGKTAPDPTATTTLD-GVEVPL 310
Query: 717 GTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK 758
G I + LLYNE+IVYD AQV ++Y+LK++FNYK
Sbjct: 311 GNGIS---TGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYK 349
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 10/80 (12%)
Query: 263 SAKHLAQGYSILNEVI-SVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQ 321
S + + YSILNEV +V D +E+ IL L+N FYT IPH FG+ PPLL N +
Sbjct: 41 SKRQIQSAYSILNEVQQAVSDGGSESQ-----ILDLSNRFYTLIPHDFGMKKPPLLSNLE 95
Query: 322 LVVQKMEMIDAMTQKLLDVK 341
+ K++M+D LLD++
Sbjct: 96 YIQAKVQMLD----NLLDIE 111
>pdb|1A26|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With Carba-Nad
pdb|1PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With 3,4-Dihydro-5-Methyl-Isoquinolinone
pdb|2PAW|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
pdb|2PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With 4-Amino-1,8-Naphthalimide
pdb|3PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With 3-Methoxybenzamide
pdb|4PAX|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase
Complexed With
8-Hydroxy-2-Methyl-3-Hydro-Quinazolin-4-One
Length = 361
Score = 323 bits (827), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 180/402 (44%), Positives = 246/402 (61%), Gaps = 55/402 (13%)
Query: 359 ECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVI-SVL 417
+ L KP+ L++++FD ++M + E+E+D+ +MPLGKLS + + YSILNEV +V
Sbjct: 9 KSKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVS 68
Query: 418 DRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYT 477
D +E+ IL L+N FYT IPH FG+ PPLL N + + K++M+D + IE+AY+
Sbjct: 69 DGGSESQ-----ILDLSNRFYTLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLLDIEVAYS 123
Query: 478 IKQEGPSAG-VHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAI 536
+ + G G P+ YEKL+ +IK VD +II +YV+NTHA TH Y L + I
Sbjct: 124 LLRGGNEDGDKDPIDINYEKLRTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEI 183
Query: 537 FEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIY 596
F + R GE +R+KPF++L N+ LLWHGSR TNFA I+S+GL IAPPEAPVTGYMFGKGIY
Sbjct: 184 FRIEREGESQRYKPFKQLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIY 243
Query: 597 FADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNS 656
FAD VSKSANYC T+ + +GL+LL EVALG + Y + N+
Sbjct: 244 FADMVSKSANYCHTSQADPIGLILLGEVALGNM---------------------YELKNA 282
Query: 657 TNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPL 716
++ +TKLP G HSV+G G+ PDP + LD + VPL
Sbjct: 283 SH-----------------------ITKLPKGKHSVKGLGKTAPDPTATTTLD-GVEVPL 318
Query: 717 GTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK 758
G I + LLYNE+IVYD AQV ++Y+LK++FNYK
Sbjct: 319 GNGIS---TGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYK 357
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 10/80 (12%)
Query: 263 SAKHLAQGYSILNEVI-SVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQ 321
S + + YSILNEV +V D +E+ IL L+N FYT IPH FG+ PPLL N +
Sbjct: 49 SKRQIQSAYSILNEVQQAVSDGGSESQ-----ILDLSNRFYTLIPHDFGMKKPPLLSNLE 103
Query: 322 LVVQKMEMIDAMTQKLLDVK 341
+ K++M+D LLD++
Sbjct: 104 YIQAKVQMLD----NLLDIE 119
>pdb|1GS0|A Chain A, Crystal Structure Of The Catalytic Fragment Of Murine Poly
(Adp-Ribose) Polymerase-2
pdb|1GS0|B Chain B, Crystal Structure Of The Catalytic Fragment Of Murine Poly
(Adp-Ribose) Polymerase-2
Length = 351
Score = 260 bits (665), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/399 (36%), Positives = 215/399 (53%), Gaps = 50/399 (12%)
Query: 359 ECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLD 418
E L+ V L++L+ + + M + E + D R PLGKL+ + GY L ++ +
Sbjct: 1 ESQLDLRVQELLKLICNVQTMEEMMIEMKYDTKRAPLGKLTVAQIKAGYQSLKKIEDCI- 59
Query: 419 RNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTI 478
A R ++ N FYT IPH FGL+ PP++ ++ + K+++++A+ IE+A +
Sbjct: 60 ---RAGQHGRALVEACNEFYTRIPHDFGLSIPPVIRTEKELSDKVKLLEALGDIEIALKL 116
Query: 479 KQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFE 538
+ HPL Y L ++ +D +++I +Y+Q+THA TH++Y++ + +FE
Sbjct: 117 VKSERQGLEHPLDQHYRNLHCALRPLDHESNEFKVISQYLQSTHAPTHKDYTMTLLDVFE 176
Query: 539 VSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFA 598
V + GE + F+ E L N+ LLWHGSRL+N+ I+S GL +APPEAP+TGYMFGKGIYFA
Sbjct: 177 VEKEGEKEAFR--EDLPNRMLLWHGSRLSNWVGILSHGLRVAPPEAPITGYMFGKGIYFA 234
Query: 599 DSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTN 658
D SKSANYC + N GLLLL EVALG+ N + +
Sbjct: 235 DMSSKSANYCFASRLKNTGLLLLSEVALGQ--------------------CNELLEANPK 274
Query: 659 NVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGT 718
GLL G HS +G G+ P P I L N TVPLG
Sbjct: 275 AQGLL-----------------------RGKHSTKGMGKMAPSPAHFITL-NGSTVPLGP 310
Query: 719 LIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNY 757
D + +L YNEFIVY P QV++RY+LK++FN+
Sbjct: 311 ASDTGILNPEGYTLNYNEFIVYSPNQVRMRYLLKIQFNF 349
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 256 APWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPP 315
AP G A+ + GY L ++ + A R ++ N FYT IPH FGL+ PP
Sbjct: 35 APLGKLTVAQ-IKAGYQSLKKIEDCI----RAGQHGRALVEACNEFYTRIPHDFGLSIPP 89
Query: 316 LLDNKQLVVQKMEMIDAM 333
++ ++ + K+++++A+
Sbjct: 90 VIRTEKELSDKVKLLEAL 107
>pdb|3KCZ|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor 3-Aminobenzamide
pdb|3KCZ|B Chain B, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor 3-Aminobenzamide
pdb|3KJD|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor Abt-888
pdb|3KJD|B Chain B, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In
Complex With An Inhibitor Abt-888
Length = 368
Score = 244 bits (624), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/397 (36%), Positives = 214/397 (53%), Gaps = 50/397 (12%)
Query: 361 SLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRN 420
S++ V L++L+ + +AM + E + + + PLGKL+ + GY L ++ +
Sbjct: 22 SMDLRVQELIKLICNVQAMEEMMMEMKYNTKKAPLGKLTVAQIKAGYQSLKKIEDCI--- 78
Query: 421 AEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTIKQ 480
A R ++ N FYT IPH FGL PPL+ ++ + +K+++++A+ IE+A + +
Sbjct: 79 -RAGQHGRALMEACNEFYTRIPHDFGLRTPPLIRTQKELSEKIQLLEALGDIEIAIKLVK 137
Query: 481 EGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVS 540
+ HPL Y L ++ +D +++I +Y+Q+THA TH +Y++ + +FEV
Sbjct: 138 TELQSPEHPLDQHYRNLHCALRPLDHESYEFKVISQYLQSTHAPTHSDYTMTLLDLFEVE 197
Query: 541 RHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADS 600
+ GE + F+ E L N+ LLWHGSR++N+ I+S GL IA PEAP+TGYMFGKGIYFAD
Sbjct: 198 KDGEKEAFR--EDLHNRMLLWHGSRMSNWVGILSHGLRIAHPEAPITGYMFGKGIYFADM 255
Query: 601 VSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNV 660
SKSANYC + N GLLLL EVALG+ N + +
Sbjct: 256 SSKSANYCFASRLKNTGLLLLSEVALGQ--------------------CNELLEANPKAE 295
Query: 661 GLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLI 720
GLL G HS +G G+ P + L N TVPLG
Sbjct: 296 GLL-----------------------QGKHSTKGLGKMAPSSAHFVTL-NGSTVPLGPAS 331
Query: 721 DLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNY 757
D +L YNE+IVY+P QV++RY+LKV+FN+
Sbjct: 332 DTGILNPDGYTLNYNEYIVYNPNQVRMRYLLKVQFNF 368
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 256 APWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPP 315
AP G A+ + GY L ++ + A R ++ N FYT IPH FGL PP
Sbjct: 54 APLGKLTVAQ-IKAGYQSLKKIEDCI----RAGQHGRALMEACNEFYTRIPHDFGLRTPP 108
Query: 316 LLDNKQLVVQKMEMIDAM 333
L+ ++ + +K+++++A+
Sbjct: 109 LIRTQKELSEKIQLLEAL 126
>pdb|3C49|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In
Complex With An Inhibitor Ku0058948
pdb|3C4H|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In
Complex With An Inhibitor Dr2313
pdb|3CE0|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In
Complex With An Inhibitor Pj34
pdb|3FHB|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In
Complex With An Inhibitor 3-Aminobenzoic Acid
Length = 357
Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 122/413 (29%), Positives = 204/413 (49%), Gaps = 69/413 (16%)
Query: 352 KVEPMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILN 411
+V+P CSL+ L+ +F ++ T+ +LD+ +MPLGKLS + +A+G+ L
Sbjct: 4 RVQP----CSLDPATQKLITNIFSKEMFKNTMALMDLDVKKMPLGKLSKQQIARGFEALE 59
Query: 412 EVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQ 471
+ L + + + L++ FYT IPH+FG + PP +++ +L+ K +M+ +
Sbjct: 60 ALEEALKGPTDGG---QSLEELSSHFYTVIPHNFGHSQPPPINSPELLQAKKDMLLVLAD 116
Query: 472 IELAYTIK----QEGPSAGV-HPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTH 526
IELA ++ QE V HPL Y+ L+ ++ +D+ P Y++I Y++ T H
Sbjct: 117 IELAQALQAVSEQEKTVEEVPHPLDRDYQLLKCQLQLLDSGAPEYKVIQTYLEQT-GSNH 175
Query: 527 REYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPV 586
R +L + I++V++ GE+ RF+ KLGN+ LLWHG+ + A+I++ GL I P
Sbjct: 176 RCPTL--QHIWKVNQEGEEDRFQAHSKLGNRKLLWHGTNMAVVAAILTSGLRI----MPH 229
Query: 587 TGYMFGKGIYFADSVSKSANYC--MTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADS 644
+G GKGIYFA SKSA Y M ++VG + L EVALG+
Sbjct: 230 SGGRVGKGIYFASENSKSAGYVIGMKCGAHHVGYMFLGEVALGR---------------- 273
Query: 645 VSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKG 704
++ T++ + + P GF SV +G PDP
Sbjct: 274 ----EHHINTDNPS-----------------------LKSPPPGFDSVIARGHTEPDPTQ 306
Query: 705 SIVLD---NNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVR 754
L+ + VP G + P + S +E+++Y +Q ++RY+L+V
Sbjct: 307 DTELELDGQQVVVPQGQPVPCPEFSSSTFS--QSEYLIYQESQCRLRYLLEVH 357
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 297 LTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKYEDTSKSKKVKVE-- 354
L++ FYT IPH+FG + PP +++ +L+ K +M+ + L + S+ +K E
Sbjct: 78 LSSHFYTVIPHNFGHSQPPPINSPELLQAKKDMLLVLADIELAQALQAVSEQEKTVEEVP 137
Query: 355 -PMD 357
P+D
Sbjct: 138 HPLD 141
>pdb|2CR9|A Chain A, Solution Structure Of Wgr Domain Of Poly(Adp-Ribose)
Polymerase-1
Length = 139
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 67/104 (64%), Gaps = 2/104 (1%)
Query: 67 VKLQIKDGLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHK 126
+KL +K G AVDPDSGL + +++ + +A +G D+ G NS+YKLQ+L+ +
Sbjct: 13 MKLTLKGGAAVDPDSGLEHSAHVLEK-GGKVFSATLGLVDIVKGTNSYYKLQLLEDD-KE 70
Query: 127 EKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGN 170
+Y++FR+WGR+GT IG K++ E A + F + +E++TGN
Sbjct: 71 NRYWIFRSWGRVGTVIGSNKLEQMPSKEDAIEHFMKLYEEKTGN 114
>pdb|2RF5|A Chain A, Crystal Structure Of Human Tankyrase 1- Catalytic Parp
Domain
Length = 258
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 556 NKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANY-------- 607
N+ +L+HGS N +II KG G MFG GIYFA++ SKS Y
Sbjct: 111 NERMLFHGSPFIN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGT 165
Query: 608 -CMTNSTNNVGL----LLLCEVALGKVVLRY 633
C T+ + + +L C V LGK L++
Sbjct: 166 GCPTHKDRSCYICHRQMLFCRVTLGKSFLQF 196
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 634 MFGKGIYFADSVSKSANY---------CMTNSTNNVGL----LLLCEVALGKVVKKTQAE 680
MFG GIYFA++ SKS Y C T+ + + +L C V LGK +
Sbjct: 140 MFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTI 199
Query: 681 FVTKLPNGFHSVQGQ 695
+ P G HSV G+
Sbjct: 200 KMAHAPPGHHSVIGR 214
>pdb|3MHK|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
2-(2-
Pyridyl)-7,8-Dihydro-5h-Thiino[4,3-D]pyrimidin-4-Ol
Length = 223
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 52/140 (37%), Gaps = 36/140 (25%)
Query: 556 NKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNN 615
N+ +L+HGS N +II KG G MFG GIYFA++ SKS Y
Sbjct: 75 NERMLFHGSPFVN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYV------- 122
Query: 616 VGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVK 675
Y G G +S C LL C V LGK
Sbjct: 123 -----------------YGIGGGTGCPVHKDRSCYICHRQ-------LLFCRVTLGKSFL 158
Query: 676 KTQAEFVTKLPNGFHSVQGQ 695
+ A + P G HSV G+
Sbjct: 159 QFSAMKMAHSPPGHHSVTGR 178
>pdb|3KR7|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain
pdb|3KR8|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3KR8|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor Xav939
pdb|3MHJ|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3MHJ|B Chain B, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
1-Methyl-3-
(Trifluoromethyl)-5h-Benzo[c][1,8]naphtyridine-6-One
pdb|3P0N|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0N|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0P|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3P0Q|C Chain C, Human Tankyrase 2 - Catalytic Parp Domain In Complex With
An Inhibitor
pdb|3U9H|A Chain A, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9H|B Chain B, Complex Structure Of Human Tankyrase 2 With Nicotinamide
pdb|3U9Y|A Chain A, Crystal Structure Of Human Tankyrase 2 Catalytic Domain In
Complex With Olaparib
pdb|3UA9|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|3UA9|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With A
Selective Inhibitor
pdb|4AVU|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVU|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
6(5h) -Phenanthridinone
pdb|4AVW|A Chain A, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
pdb|4AVW|B Chain B, Crystal Structure Of Human Tankyrase 2 In Complex With
Tiq-A
Length = 240
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 52/140 (37%), Gaps = 36/140 (25%)
Query: 556 NKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNN 615
N+ +L+HGS N +II KG G MFG GIYFA++ SKS Y
Sbjct: 103 NERMLFHGSPFVN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYV------- 150
Query: 616 VGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVK 675
Y G G +S C LL C V LGK
Sbjct: 151 -----------------YGIGGGTGCPVHKDRSCYICHRQ-------LLFCRVTLGKSFL 186
Query: 676 KTQAEFVTKLPNGFHSVQGQ 695
+ A + P G HSV G+
Sbjct: 187 QFSAMKMAHSPPGHHSVTGR 206
>pdb|4DVI|A Chain A, Crystal Structure Of Tankyrase 1 With Iwr2
pdb|4DVI|B Chain B, Crystal Structure Of Tankyrase 1 With Iwr2
pdb|4I9I|A Chain A, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|B Chain B, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|C Chain C, Crystal Structure Of Tankyrase 1 With Compound 4
pdb|4I9I|D Chain D, Crystal Structure Of Tankyrase 1 With Compound 4
Length = 217
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 556 NKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANY-------- 607
N+ +L+HGS N +II KG G MFG GIYFA++ SKS Y
Sbjct: 75 NERMLFHGSPFIN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGT 129
Query: 608 -CMTNSTNNVGL----LLLCEVALGKVVLRY 633
C T+ + + +L C V LGK L++
Sbjct: 130 GCPTHKDRSCYICHRQMLFCRVTLGKSFLQF 160
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 634 MFGKGIYFADSVSKSANY---------CMTNSTNNVGL----LLLCEVALGKVVKKTQAE 680
MFG GIYFA++ SKS Y C T+ + + +L C V LGK +
Sbjct: 104 MFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTM 163
Query: 681 FVTKLPNGFHSVQGQ 695
+ P G HSV G+
Sbjct: 164 KMAHAPPGHHSVIGR 178
>pdb|4HKI|A Chain A, Tankyrase 2 In Complex With Flavone
pdb|4HKI|H Chain H, Tankyrase 2 In Complex With Flavone
pdb|4HKK|A Chain A, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKK|C Chain C, Complex Structure Of Human Tankyrase 2 With Apigenin
pdb|4HKN|A Chain A, Complex Structure Of Human Tankyrase 2 With Luteolin
pdb|4HL5|A Chain A, Complex Structure Of Human Tankyrase 2 With 7-Hydroxy -4'-
Methoxyflavone
pdb|4HLF|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLF|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With 7,3',4'-
Trihydroxyflavone
pdb|4HLG|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLG|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
3'-Hydroxyflavone
pdb|4HLH|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLH|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
4'-Fluoroflavone
pdb|4HLK|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLK|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With
4'-Methylflavone
pdb|4HLM|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HLM|B Chain B, Crystal Structure Of Tankyrase 2 In Complex With 3',4'-
Dihydroxyflavone
pdb|4HMH|A Chain A, Crystal Structure Of Tankyrase 2 In Complex With
7,3-Dihydroxyflavone
Length = 191
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 18/91 (19%)
Query: 556 NKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANY-------- 607
N+ +L+HGS N +II KG G MFG GIYFA++ SKS Y
Sbjct: 103 NERMLFHGSPFVN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGT 157
Query: 608 -CMTNSTNNVGL----LLLCEVALGKVVLRY 633
C + + + LL C V LGK L++
Sbjct: 158 GCPVHKDRSCYICHRQLLFCRVTLGKSFLQF 188
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 13/52 (25%)
Query: 634 MFGKGIYFADSVSKSANY---------CMTNSTNNVGL----LLLCEVALGK 672
MFG GIYFA++ SKS Y C + + + LL C V LGK
Sbjct: 132 MFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGK 183
>pdb|3UDD|A Chain A, Tankyrase-1 In Complex With Small Molecule Inhibitor
pdb|3UDD|B Chain B, Tankyrase-1 In Complex With Small Molecule Inhibitor
pdb|3UH2|A Chain A, Tankyrase-1 In Complexed With Pj34
pdb|3UH2|B Chain B, Tankyrase-1 In Complexed With Pj34
pdb|3UH4|A Chain A, Tankyrase-1 Complexed With Nvp-Xav939
pdb|3UH4|B Chain B, Tankyrase-1 Complexed With Nvp-Xav939
Length = 224
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 556 NKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANY-------- 607
N+ +L+HGS N +II KG G MFG GIYFA++ SKS Y
Sbjct: 75 NERMLFHGSPFIN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGT 129
Query: 608 -CMTNSTNNVGL----LLLCEVALGKVVLRY 633
C T+ + + +L C V LGK L++
Sbjct: 130 GCPTHKDRSCYICHRQMLFCRVTLGKSFLQF 160
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 634 MFGKGIYFADSVSKSANY---------CMTNSTNNVGL----LLLCEVALGKVVKKTQAE 680
MFG GIYFA++ SKS Y C T+ + + +L C V LGK +
Sbjct: 104 MFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTI 163
Query: 681 FVTKLPNGFHSVQGQ 695
+ P G HSV G+
Sbjct: 164 KMAHAPPGHHSVIGR 178
>pdb|3ODA|A Chain A, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3ODA|B Chain B, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3ODA|C Chain C, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3ODA|D Chain D, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3ODA|E Chain E, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3ODA|F Chain F, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3ODA|G Chain G, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3ODA|H Chain H, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|4DQY|A Chain A, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
pdb|4DQY|D Chain D, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
Length = 116
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 6 KPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQ 39
K + +YAKS RA CK C ++I + +LR+A+MVQ
Sbjct: 27 KLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQ 60
>pdb|2DMJ|A Chain A, Solution Structure Of The First Zf-Parp Domain Of Human
Poly(Adp-Ribose)polymerase-1
Length = 106
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 6 KPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQ 39
K + +YAKS RA CK C ++I + +LR+A+MVQ
Sbjct: 14 KLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQ 47
>pdb|4AV1|A Chain A, Crystal Structure Of The Human Parp-1 Dna Binding Domain
In Complex With Dna
pdb|4AV1|B Chain B, Crystal Structure Of The Human Parp-1 Dna Binding Domain
In Complex With Dna
pdb|4AV1|C Chain C, Crystal Structure Of The Human Parp-1 Dna Binding Domain
In Complex With Dna
pdb|4AV1|D Chain D, Crystal Structure Of The Human Parp-1 Dna Binding Domain
In Complex With Dna
Length = 223
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 2 SKHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQ 39
S K + +YAKS RA CK C ++I + +LR+A+MVQ
Sbjct: 24 SHSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQ 61
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 8 FECDYAKSNRAKCKGCKDTIIQGTLRLA 35
F +YAKSNR+ CKGC + I +G +RL+
Sbjct: 134 FAAEYAKSNRSTCKGCMEKIEKGQVRLS 161
>pdb|2L30|A Chain A, Human Parp-1 Zinc Finger 1
Length = 108
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 6 KPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQ 39
K + +YAKS RA CK C ++I + +LR+A+MVQ
Sbjct: 7 KLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQ 40
>pdb|1V9X|A Chain A, Solution Structure Of The First Zn-Finger Domain Of
Poly(Adp-Ribose) Polymerase-1
Length = 114
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 6 KPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQ 39
KP+ +YAKS+R+ CK CK I + RL +VQ
Sbjct: 9 KPWRAEYAKSSRSSCKTCKSVINKENFRLGKLVQ 42
>pdb|3OD8|A Chain A, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3OD8|B Chain B, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3OD8|C Chain C, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3OD8|D Chain D, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3OD8|E Chain E, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3OD8|F Chain F, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3OD8|G Chain G, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
pdb|3OD8|H Chain H, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
Length = 116
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 6 KPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQ 39
K + +YAKS RA CK C ++I + +LR A+ VQ
Sbjct: 27 KLYRVEYAKSGRASCKKCSESIPKDSLRXAIXVQ 60
>pdb|3ODC|A Chain A, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna
pdb|3ODC|B Chain B, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna
pdb|3ODE|A Chain A, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna
pdb|3ODE|B Chain B, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna
Length = 111
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 8 FECDYAKSNRAKCKGCKDTIIQGTLRLA 35
F +YAKSNR+ CKGC + I +G +RL+
Sbjct: 10 FAAEYAKSNRSTCKGCMEKIEKGQVRLS 37
>pdb|2CS2|A Chain A, Solution Structure Of The Second Zn-Finger Domain Of
Poly(Adp-Ribose) Polymerase-1
Length = 134
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 8 FECDYAKSNRAKCKGCKDTIIQGTLRLA 35
F +YAKSNR+ CKGC + I +G +RL+
Sbjct: 18 FAAEYAKSNRSTCKGCMEKIEKGQVRLS 45
>pdb|2L31|A Chain A, Human Parp-1 Zinc Finger 2
Length = 112
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 8 FECDYAKSNRAKCKGCKDTIIQGTLRLA 35
F +YAKSNR+ CKGC + I +G +RL+
Sbjct: 11 FAAEYAKSNRSTCKGCMEKIEKGQVRLS 38
>pdb|1UW0|A Chain A, Solution Structure Of The Zinc-Finger Domain From Dna
Ligase Iiia
Length = 117
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 8 FECDYAKSNRAKCKGCKDTIIQGTLRLAVMV 38
F DYAK A CK CK+ I++G R+ +V
Sbjct: 6 FCVDYAKRGTAGCKKCKEKIVKGVCRIGKVV 36
>pdb|4F0D|A Chain A, Human Artd15PARP16 IN COMPLEX WITH 3-Aminobenzamide
pdb|4F0D|B Chain B, Human Artd15PARP16 IN COMPLEX WITH 3-Aminobenzamide
Length = 277
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 551 FEKLGNKHLLW--HGSRLTNFASIISKGL-CIAPPEAPVTGYMFGKGIYFADSVSKSANY 607
+E G + L++ HGSRL NF SII GL C + +FG+G Y +S + Y
Sbjct: 137 YETKGERDLIYAFHGSRLENFHSIIHNGLHCHLNKTS-----LFGEGTYLTSDLSLALIY 191
Query: 608 CMTNSTNNVGLL--LLCEVALGKVV 630
LL +L VA+ +V+
Sbjct: 192 SPHGHGWQHSLLGPILSCVAVCEVI 216
>pdb|1Q53|A Chain A, Solution Structure Of Hypothetical Arabidopsis Thaliana
Protein At3g17210. Center For Eukaryotic Structural
Genomics Target 13081
pdb|1Q53|B Chain B, Solution Structure Of Hypothetical Arabidopsis Thaliana
Protein At3g17210. Center For Eukaryotic Structural
Genomics Target 13081
Length = 112
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 236 KFIKDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNE 276
+ IK AN ++ LIE M WG D S ++L QGY+ + E
Sbjct: 30 ELIKGYAN--LVNLIEPMKAFHWGKDVSIENLHQGYTHIFE 68
>pdb|2COK|A Chain A, Solution Structure Of Brct Domain Of Poly(Adp-Ribose)
Polymerase-1
Length = 113
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 220 RAMEELKEYGIHVVPSKFIKD--AANGKVLELIEKMNLAPWGSD 261
+ MEE+KE I VV F++D A+ + EL L+ WG++
Sbjct: 62 KKMEEVKEANIRVVSEDFLQDVSASTKSLQELFLAHILSSWGAE 105
>pdb|2DQ0|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii Complexed With A Seryl-Adenylate Analog
pdb|2DQ0|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii Complexed With A Seryl-Adenylate Analog
pdb|2ZR2|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii Complexed With Atp
pdb|2ZR2|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii Complexed With Atp
pdb|2ZR3|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii
pdb|2ZR3|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus
Horikoshii
Length = 455
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 102 MGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFD 161
M + V G SF + + K+ E YL + ++ D KD+ +
Sbjct: 220 MVRRFVEEGSTSFEDFEDVIYKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVS 279
Query: 162 RCFEKETGNTSGKDAK 177
CF KE G T+GKD K
Sbjct: 280 PCFRKEAG-TAGKDTK 294
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,616,080
Number of Sequences: 62578
Number of extensions: 890300
Number of successful extensions: 2088
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1997
Number of HSP's gapped (non-prelim): 56
length of query: 758
length of database: 14,973,337
effective HSP length: 106
effective length of query: 652
effective length of database: 8,340,069
effective search space: 5437724988
effective search space used: 5437724988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)