Query psy6813
Match_columns 758
No_of_seqs 316 out of 1018
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 19:04:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03124 poly [ADP-ribose] pol 100.0 9E-130 2E-134 1114.1 46.3 492 62-758 140-641 (643)
2 PLN03122 Poly [ADP-ribose] pol 100.0 4E-127 8E-132 1118.5 43.0 493 62-758 302-807 (815)
3 PLN03123 poly [ADP-ribose] pol 100.0 1E-124 3E-129 1116.8 45.0 492 63-758 486-980 (981)
4 cd01437 parp_like Poly(ADP-rib 100.0 1.1E-89 2.5E-94 745.1 31.2 346 359-754 1-347 (347)
5 KOG1037|consensus 100.0 8.5E-65 1.8E-69 575.9 14.3 517 2-758 3-524 (531)
6 PF00644 PARP: Poly(ADP-ribose 100.0 3.6E-42 7.9E-47 350.3 12.9 206 497-755 1-206 (206)
7 cd01438 tankyrase_like Tankyra 100.0 9.5E-34 2.1E-38 288.7 15.9 194 495-755 12-220 (223)
8 PF02877 PARP_reg: Poly(ADP-ri 100.0 2.2E-32 4.8E-37 261.0 13.9 133 359-495 1-133 (133)
9 cd08003 WGR_PARP2_like WGR dom 100.0 6E-31 1.3E-35 239.9 10.4 85 88-175 1-86 (103)
10 cd08001 WGR_PARP1_like WGR dom 100.0 1.4E-28 3.1E-33 225.3 11.4 87 87-175 1-87 (104)
11 PLN03123 poly [ADP-ribose] pol 99.9 1.1E-29 2.3E-34 304.5 -4.6 395 177-657 409-882 (981)
12 cd08002 WGR_PARP3_like WGR dom 99.9 1.7E-27 3.7E-32 216.3 10.2 81 86-175 2-83 (100)
13 cd07997 WGR_PARP WGR domain of 99.9 2E-26 4.4E-31 210.4 10.1 84 89-175 2-85 (102)
14 cd01439 TCCD_inducible_PARP_li 99.9 1.4E-22 3E-27 190.7 9.0 113 559-753 1-121 (121)
15 cd01341 ADP_ribosyl ADP_ribosy 99.9 2.6E-22 5.5E-27 192.7 7.1 132 559-749 1-137 (137)
16 smart00773 WGR Proposed nuclei 99.8 4.1E-21 8.8E-26 169.4 9.5 79 93-175 2-80 (84)
17 PLN03122 Poly [ADP-ribose] pol 99.8 8.4E-24 1.8E-28 249.4 -13.4 403 177-659 205-709 (815)
18 cd07994 WGR WGR domain. The WG 99.8 1.6E-19 3.4E-24 155.4 9.5 72 100-174 2-73 (73)
19 PF05406 WGR: WGR domain; Int 99.8 1.5E-19 3.2E-24 158.5 8.3 76 94-175 2-77 (81)
20 cd07996 WGR_MMR_like WGR domai 99.6 4.7E-16 1E-20 133.8 8.6 72 100-174 2-73 (74)
21 PLN03124 poly [ADP-ribose] pol 99.4 5.7E-15 1.2E-19 171.0 -7.7 162 473-654 362-539 (643)
22 COG3831 Uncharacterized conser 99.0 1.3E-09 2.9E-14 95.3 7.4 69 99-175 2-70 (85)
23 cd01437 parp_like Poly(ADP-rib 98.8 5E-10 1.1E-14 123.0 -2.0 162 473-654 74-248 (347)
24 PF00645 zf-PARP: Poly(ADP-rib 98.7 1.1E-08 2.4E-13 89.8 2.5 35 11-45 1-35 (82)
25 PF02877 PARP_reg: Poly(ADP-ri 98.5 3.9E-08 8.5E-13 94.4 3.0 76 263-344 41-116 (133)
26 cd07998 WGR_DNA_ligase WGR dom 98.3 4.6E-06 9.9E-11 72.5 8.8 64 109-175 10-75 (77)
27 cd01438 tankyrase_like Tankyra 97.2 0.00011 2.5E-09 76.1 0.9 26 630-655 113-138 (223)
28 cd01341 ADP_ribosyl ADP_ribosy 97.2 0.00013 2.8E-09 70.5 1.2 51 626-676 24-78 (137)
29 KOG1037|consensus 96.8 0.00039 8.4E-09 80.9 0.7 55 601-655 365-421 (531)
30 KOG4437|consensus 96.6 0.00025 5.5E-09 76.1 -2.4 35 5-40 3-37 (482)
31 PF00644 PARP: Poly(ADP-ribose 96.5 0.00047 1E-08 70.6 -1.3 49 605-653 62-112 (206)
32 cd01439 TCCD_inducible_PARP_li 95.9 0.0024 5.2E-08 60.5 0.2 22 632-653 28-49 (121)
33 PF15633 Tox-ART-HYD1: HYD1 si 59.3 5.9 0.00013 36.3 1.8 41 560-602 1-41 (96)
34 PF12738 PTCB-BRCT: twin BRCT 54.0 2.8 6.1E-05 34.5 -1.1 50 177-236 13-62 (63)
35 PRK00819 RNA 2'-phosphotransfe 53.1 11 0.00024 38.3 2.8 22 558-579 95-116 (179)
36 KOG4177|consensus 51.3 5 0.00011 51.0 0.0 103 554-695 1029-1131(1143)
37 COG0272 Lig NAD-dependent DNA 50.2 5.6 0.00012 47.8 0.2 51 178-238 612-662 (667)
38 PRK14350 ligA NAD-dependent DN 48.3 11 0.00024 45.8 2.3 52 178-239 611-663 (669)
39 PF01885 PTS_2-RNA: RNA 2'-pho 44.9 11 0.00023 38.6 1.2 33 558-600 106-138 (186)
40 PRK06195 DNA polymerase III su 38.0 15 0.00032 40.4 1.1 61 178-239 238-304 (309)
41 cd08003 WGR_PARP2_like WGR dom 37.0 2.3 5.1E-05 39.4 -4.5 14 304-318 41-54 (103)
42 cd00027 BRCT Breast Cancer Sup 32.8 14 0.0003 29.4 -0.2 54 177-239 15-68 (72)
43 PRK06063 DNA polymerase III su 32.3 15 0.00033 40.5 0.0 54 178-239 249-303 (313)
44 PRK14351 ligA NAD-dependent DN 32.2 19 0.00042 43.9 0.9 53 178-239 627-680 (689)
45 PF13151 DUF3990: Protein of u 31.0 20 0.00043 35.6 0.6 45 558-611 1-45 (154)
46 PF13049 DUF3910: Protein of u 27.3 1.6E+02 0.0034 26.1 5.3 54 88-149 16-69 (93)
47 PRK07956 ligA NAD-dependent DN 26.8 42 0.00092 40.9 2.5 52 178-239 608-660 (665)
48 PF14164 YqzH: YqzH-like prote 24.6 81 0.0018 27.0 3.0 34 373-406 4-37 (64)
49 PF00533 BRCT: BRCA1 C Terminu 23.0 18 0.00039 30.1 -1.1 55 177-239 21-75 (78)
50 cd01436 Dipth_tox_like Mono-AD 22.4 59 0.0013 31.2 2.0 50 561-611 3-52 (147)
51 smart00292 BRCT breast cancer 20.7 32 0.0007 27.9 -0.1 55 177-239 19-74 (80)
No 1
>PLN03124 poly [ADP-ribose] polymerase; Provisional
Probab=100.00 E-value=8.7e-130 Score=1114.07 Aligned_cols=492 Identities=39% Similarity=0.702 Sum_probs=449.7
Q ss_pred CCCceeEEEecCCcccCCCCC--CCCceEEEEeCCcceeeeEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeecccc
Q psy6813 62 SKSGTVKLQIKDGLAVDPDSG--LADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIG 139 (758)
Q Consensus 62 ~~~~~~k~~~k~~~~VD~~~~--~~~~~~Vy~~~~~~Y~~~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG 139 (758)
..++.+++++||+++||+.|+ +.+++|||++++.+| +|||||||+++|+|+||+||||+++. ++.|+||+||||||
T Consensus 140 ~~~~~~~~~~k~~~~vD~~~~~~~~~~~hVyed~g~iY-da~Lnqtdi~~n~NkFY~iQlLe~d~-~~~Y~v~~rWGRVG 217 (643)
T PLN03124 140 KEEKIVTATKKGRAVLDQWLPDHIKSNYHVLEEGDDVY-DAMLNQTNVGDNNNKFYVLQVLESDD-GSKYMVYTRWGRVG 217 (643)
T ss_pred ccccceeeeeecccccCCCCCccccCceEEEecCCeEE-EEEEEccccCCCCcceEEEEEEEeCC-CCeEEEEEEeCccC
Confidence 357889999999999997655 557899999999999 99999999999999999999999988 78999999999999
Q ss_pred ccCCCccccc-CCCHHHHHHHHHHHHHhHhCCCCccchhhHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCc
Q psy6813 140 TSIGGTKVQD-FKDVESAFDEFDRCFEKETGNTSGKDAKQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKG 218 (758)
Q Consensus 140 ~~~G~~~~~~-f~~~~~A~~~F~k~F~~KTgn~w~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (758)
+ .||+++.+ |.++++|+.+|+++|++||||.|++|
T Consensus 218 ~-~Gq~~l~~~~~sle~Ai~~F~kkF~eKTGN~W~~R------------------------------------------- 253 (643)
T PLN03124 218 V-KGQDKLHGPYDSREPAIREFEKKFYDKTKNHWSDR------------------------------------------- 253 (643)
T ss_pred C-cCcccccCCCCCHHHHHHHHHHHHHHHhCCchhhc-------------------------------------------
Confidence 7 69999985 89999999999999999999999999
Q ss_pred hhhhHHHHhhccccccchhhhhhhchhHHHHHHhhccCCCCCCchhhhhhhhhhhHHHHHHHhhccccccchhhhhhcCC
Q psy6813 219 ARAMEELKEYGIHVVPSKFIKDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLT 298 (758)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~s~~~~~~~y~il~~~~~~~~~~~~~~~~~~~i~~~~ 298 (758)
.+|.+ +|
T Consensus 254 ----------------~~F~k---------------------------------------------------------~p 260 (643)
T PLN03124 254 ----------------KNFIS---------------------------------------------------------HP 260 (643)
T ss_pred ----------------ccccc---------------------------------------------------------cC
Confidence 37988 89
Q ss_pred CcceeccccCCCCCCCCCCchHHHHHHHHHHHHHHHhhhhcccccccccc-ccc---cccCCCCCCCCCHHHHHHHHHHh
Q psy6813 299 NSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKYEDTSKS-KKV---KVEPMDIECSLEKPVAALVELLF 374 (758)
Q Consensus 299 ~kyy~~i~~~~g~~~~~~~~~~~~v~~k~e~l~~~~~~~~e~~y~~~~~~-~k~---~~~~~~~~s~L~~~Vq~Lvk~I~ 374 (758)
|||++ ||+||+.++.. ... ......++|+|+++||+||++||
T Consensus 261 gKY~~----------------------------------ie~dy~~~~~~~~~~~~~~~~~~~~~skL~~~Vq~Li~lIf 306 (643)
T PLN03124 261 KKYTW----------------------------------LEMDYEDEEESKKDKPSVSSEDKNKQSKLDPRVAQFISLIC 306 (643)
T ss_pred CceeE----------------------------------EEeecccccchhhhccchhccccCCCCCCCHHHHHHHHHHh
Confidence 99999 77777765321 110 11123467999999999999999
Q ss_pred cHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHhhhhhhhcccccCCCCCC--CC
Q psy6813 375 DEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADP--PL 452 (758)
Q Consensus 375 d~~~~~~~l~e~~~D~~kmPLGkLS~~qI~~a~~iL~ei~~~l~~~~~~~~~~~li~~lsn~fYtlIPh~fg~~~~--~l 452 (758)
|+++|+++|.+|++|+.+||||+||+.||.+||+||++|+++|+... ... +.+|||+|||+|||+||+..| |+
T Consensus 307 d~~~m~~~m~e~~~D~~KmPLGkLSk~qI~kgy~vL~ei~~~l~~~~----~~~-l~~lSn~FYTlIPH~FG~~~~~~~v 381 (643)
T PLN03124 307 DVSMMKQQMMEIGYNARKLPLGKLSKSTILKGYEVLKRIAEVISRSD----RET-LEELSGEFYTVIPHDFGFKKMRQFT 381 (643)
T ss_pred CHHHHHHHHHHcCCCcccCCCcccCHHHHHHHHHHHHHHHHHHcccc----hHH-HHHHhcCeEEecCcccccCCCCccc
Confidence 99999999999999999999999999999999999999999997654 234 489999999999999999854 69
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHhhcCcEEEEcCCCChHHHHHHHHHHhcccCCCcCcccc
Q psy6813 453 LDNKQLVVQKMEMIDAMTQIELAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLN 532 (758)
Q Consensus 453 id~~~~l~~k~~lLe~L~dIe~A~~li~~~~~~~~~Pld~~Y~~L~~~L~~Ld~~S~Ey~~I~ky~~nT~~~~h~~~~l~ 532 (758)
|++.+.|+++++||++|.||++|++|+........||||.+|++|+|+|++|+++|+||++|.+|+.+||+++|..|+++
T Consensus 382 Idt~~~lk~k~elLe~L~DIevA~~ll~~~~~~~~~pld~~Y~~L~c~i~pLd~~S~efk~I~~Yl~nT~~~th~~y~l~ 461 (643)
T PLN03124 382 IDTPQKLKHKLEMVEALGEIEIATKLLKDDIGEQDDPLYAHYKRLNCELEPLDTDSEEFSMIAKYLENTHGQTHSGYTLE 461 (643)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHcCCeeEEcCCCCHHHHHHHHHHHhcCCCccCcCcee
Confidence 99999999999999999999999999987666678999999999999999999999999999999999999999999999
Q ss_pred cceeEEeecchhhhccccccccCCeEEeeccCCCcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCCC
Q psy6813 533 IEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNS 612 (758)
Q Consensus 533 I~~IfrV~r~~E~~rF~~~k~l~N~~LLwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~ 612 (758)
|++||+|+|.+|.+||++|.+++|++|||||||.+||.|||++||+|+||++|.+|||||+||||||+++||++||+++.
T Consensus 462 V~~If~V~R~~E~~rF~~~~~~~Nr~LLWHGSr~~N~~gILs~GLriaPpea~~~GymfGkGIYFAd~~skSa~Yc~~~~ 541 (643)
T PLN03124 462 IVQIFKVSREGEDERFQKFSSTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPSTGYMFGKGVYFADMFSKSANYCYASA 541 (643)
T ss_pred EEEEEEeccccchhhHHHhhccCCeEEEEcCCCcccHHHHHhccCccCCcccccccccccceeEecchhhhhhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCccchhhHHHHhcccccceeecccccccccccCcccCccccCCCCCceeEEEEEeecCcceeecccccc-cCCCCCCCc
Q psy6813 613 TNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFV-TKLPNGFHS 691 (758)
Q Consensus 613 ~~~~glLlL~eVAlGa~~~g~mfGkGiYFAd~~SkSa~Yc~~~~~~~~r~mLLceVALG~~~e~~~a~~~-~~~p~G~~S 691 (758)
.++ .|+|||||||||++++++.++|. .++|+|+||
T Consensus 542 ~~~--------------------------------------------~g~llLceVaLG~~~el~~~~y~a~~~p~G~~S 577 (643)
T PLN03124 542 ANP--------------------------------------------DGVLLLCEVALGDMNELLQADYNANKLPPGKLS 577 (643)
T ss_pred CCC--------------------------------------------eeEEEEEEEecCCcchhccCccccccCCCCcee
Confidence 443 45699999999999999999976 789999999
Q ss_pred cccCCCccCCCCCCeeecCCeEeeCCccccCCCCcCCCCCCCCcEEEEecCCceeeeeEEEEEEEeC
Q psy6813 692 VQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK 758 (758)
Q Consensus 692 v~g~G~~~Pdp~~~~~~~dgv~vP~G~~i~~p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~~~~~~ 758 (758)
|+|+|++.|||++.++++|||+||+|++++.+ ..+++|.||||||||++||+|||||+|+|+|+
T Consensus 578 ~kG~G~~~Pdp~~~~~~~dGV~VP~Gk~~~~~---~~~~~L~yNEYIVYd~~Qvr~rYLv~vkf~~~ 641 (643)
T PLN03124 578 TKGVGRTVPDPSEAKTLEDGVVVPLGKPVESP---YSKGSLEYNEYIVYNVDQIRMRYVLQVKFNYK 641 (643)
T ss_pred EEeccCCCCCcccceecCCCeEeeCCccccCC---CCCCccccCceEEechhHeEEEEEEEEEEeec
Confidence 99999999999999999999999999999753 34678999999999999999999999999996
No 2
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=100.00 E-value=3.5e-127 Score=1118.47 Aligned_cols=493 Identities=28% Similarity=0.441 Sum_probs=438.9
Q ss_pred CCCceeEEEecCCcccCCCCCCC-CceEEEEeCCcceeeeEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeeccccc
Q psy6813 62 SKSGTVKLQIKDGLAVDPDSGLA-DTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGT 140 (758)
Q Consensus 62 ~~~~~~k~~~k~~~~VD~~~~~~-~~~~Vy~~~~~~Y~~~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~ 140 (758)
+.++++|+ ||+++||++|++. +++|||+++|.+| +|+|||||+++|+|+||+||||+++. +.|+||+||||||+
T Consensus 302 ~~~~~~k~--k~~~~V~~~~~l~~~~~~V~~~~~~iY-d~~Lnqtd~~~n~NkfY~iQlL~~~~--~~y~~~~rWGRVG~ 376 (815)
T PLN03122 302 SLSAELKL--YGKRGVYKDSKLQEEGGKIFEKDGILY-NCAFSICDLGRGLNEYCIMQLITVPD--SNLHLYYKKGRVGD 376 (815)
T ss_pred cccchhcc--ccCcCCCcccccccCccEEEecCCeEe-eeeeeeeeccCCCcceEEEEEEEcCC--CcEEEEeeecccCC
Confidence 33444444 9999999999987 8999999999999 99999999999999999999999886 58999999999998
Q ss_pred cC-CCcccccCCCHHHHHHHHHHHHHhHhCCCCccchhhHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCch
Q psy6813 141 SI-GGTKVQDFKDVESAFDEFDRCFEKETGNTSGKDAKQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGA 219 (758)
Q Consensus 141 ~~-G~~~~~~f~~~~~A~~~F~k~F~~KTgn~w~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (758)
.+ |+.++++|+++++|+.+|+++|++||||.|++|. .
T Consensus 377 ~gq~~~~~~~~~~~~~Ai~~F~kkF~eKTgn~~~~w~------------------------------------------~ 414 (815)
T PLN03122 377 DPNAEERLEEWEDVDAAIKEFVRLFEEITGNEFEPWE------------------------------------------R 414 (815)
T ss_pred cCCCccccCCCCCHHHHHHHHHHHHHHHhCCCccccc------------------------------------------c
Confidence 43 3457899999999999999999999999977651 0
Q ss_pred hhhHHHHhhccccccchhhhhhhchhHHHHHHhhccCCCCCCchhhhhhhhhhhHHHHHHHhhccccccchhhhhhcCCC
Q psy6813 220 RAMEELKEYGIHVVPSKFIKDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTN 299 (758)
Q Consensus 220 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~s~~~~~~~y~il~~~~~~~~~~~~~~~~~~~i~~~~~ 299 (758)
+ .+|++ .||
T Consensus 415 r--------------~~F~k---------------------------------------------------------~pg 423 (815)
T PLN03122 415 E--------------KKFEK---------------------------------------------------------KRL 423 (815)
T ss_pred c--------------cCccc---------------------------------------------------------cCC
Confidence 1 37988 899
Q ss_pred cceeccccCCCCCCCCCCchHHHHHHHHHHHHHHHhhhhcccccccccc---ccccccCCCCCCCCCHHHHHHHHHHhcH
Q psy6813 300 SFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKYEDTSKS---KKVKVEPMDIECSLEKPVAALVELLFDE 376 (758)
Q Consensus 300 kyy~~i~~~~g~~~~~~~~~~~~v~~k~e~l~~~~~~~~e~~y~~~~~~---~k~~~~~~~~~s~L~~~Vq~Lvk~I~d~ 376 (758)
|||+ +++||+.++.. ...+.....++|+|+++||+||++|||+
T Consensus 424 ky~~----------------------------------id~d~~~~~~~~~~~~~~~~~~~~~skL~~~Vq~L~~lIfd~ 469 (815)
T PLN03122 424 KFYP----------------------------------IDMDDGVDVRAGGLGLRQLGVAAAHCKLDPKVANFMKVLCSQ 469 (815)
T ss_pred CCce----------------------------------eeccccccccccccchhhcccccCCCCCCHHHHHHHHHHcCH
Confidence 9999 77777765321 1111123456799999999999999999
Q ss_pred HHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHhcccchhh-hHHHHHHHhhhhhhhcccccCCCCCCCCCCc
Q psy6813 377 KAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEAD-VKDRLILTLTNSFYTHIPHSFGLADPPLLDN 455 (758)
Q Consensus 377 ~~~~~~l~e~~~D~~kmPLGkLS~~qI~~a~~iL~ei~~~l~~~~~~~-~~~~li~~lsn~fYtlIPh~fg~~~~~lid~ 455 (758)
++|+++|++|+||+.+||||+||+.||.+||+||++|+++|++..... .....+.+|||+|||+||| .+||+|++
T Consensus 470 ~~m~~~m~e~~~D~~kmPLGKLSk~qI~~g~~vL~ei~~~l~~~~~~~~~~~~~~~dlSnrfYTlIPh----~~ppvi~~ 545 (815)
T PLN03122 470 EIYRYAMMEMGLDSPDLPMGMLSDFHLKRCEEVLLEFAEFVKSEKETGQKAEAMWLDFSNKWFSLVHS----TRPFVIRD 545 (815)
T ss_pred HHHHHHHHHcCCCcccCCCCcCCHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHhccceeccCC----CCCCCCCC
Confidence 999999999999999999999999999999999999999998754321 1223459999999999999 68999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhccC-CCCCCCCchhHHhhcCcEEEEcCCCChHHHHHHHHHHhcccCCC---cCcc
Q psy6813 456 KQLVVQK-MEMIDAMTQIELAYTIKQEG-PSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTH---REYS 530 (758)
Q Consensus 456 ~~~l~~k-~~lLe~L~dIe~A~~li~~~-~~~~~~Pld~~Y~~L~~~L~~Ld~~S~Ey~~I~ky~~nT~~~~h---~~~~ 530 (758)
.+.|+++ ++||++|.||++|++|+... .+...||||.+|++|+|+|+||+++|+||++|++|+.+||+++| ..|+
T Consensus 546 ~~~lk~k~~~mLe~L~DIeiA~~ll~~~~~~~~~~pLd~~Y~~L~~~i~pLd~~S~eyk~I~~Yl~nT~~~th~~~~~y~ 625 (815)
T PLN03122 546 IDELADHAASALETVRDINVASRLIGDMTGSTLDDPLSDRYKKLGCSISPVDKESDDYKMIVKYLEKTYEPVKVGDVSYS 625 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCchHHHHHhcCceEEEcCCCCHHHHHHHHHHHhcCCCccccCcccc
Confidence 9999999 59999999999999999764 34568999999999999999999999999999999999999999 5789
Q ss_pred cccceeEEeecchhhhccccccccCCeEEeeccCCCcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccC
Q psy6813 531 LNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMT 610 (758)
Q Consensus 531 l~I~~IfrV~r~~E~~rF~~~k~l~N~~LLwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~ 610 (758)
++|++||+|+|.++ +||++|++++||+|||||||++||+|||+||||||||+||+||||||||||||||+|||||||++
T Consensus 626 l~v~~IF~veR~ge-~rf~~~~~l~NR~LLWHGSR~tN~~gILsqGLRIAPPEAPvtGYMFGKGIYFAD~~SKSAnYC~t 704 (815)
T PLN03122 626 VSVENIFAVESSAG-PSLDEIKKLPNKVLLWCGTRSSNLLRHLAKGFLPAVCSLPVPGYMFGKAIVCSDAAAEAARYGFT 704 (815)
T ss_pred eeEeEEEEeccCcc-ccchhhcCCCCceEEeccchhhhHHHHhhCCCccCCcccCCCCCccCCeeEecchhhhhhhhhcc
Confidence 99999999999996 79999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCccchhhHHHHhcccccceeecccccccccccCcccCccccCCCCCceeEEEEEeecCcc-eeecccc-cccCCCCC
Q psy6813 611 NSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKV-VKKTQAE-FVTKLPNG 688 (758)
Q Consensus 611 ~~~~~~glLlL~eVAlGa~~~g~mfGkGiYFAd~~SkSa~Yc~~~~~~~~r~mLLceVALG~~-~e~~~a~-~~~~~p~G 688 (758)
+.++++|+ |||||||||++ +++..++ +..++|+|
T Consensus 705 ~~~~~~Gl--------------------------------------------LlLcEVALG~~~~el~~~~~~~~~~~~g 740 (815)
T PLN03122 705 AVDRPEGF--------------------------------------------LVLAVASLGDEVLELTKPPEDVKSYEEK 740 (815)
T ss_pred ccCCCcce--------------------------------------------EEEEHhhcCchHHHhhcCchhhhccCCC
Confidence 76666655 99999999997 7998887 67899999
Q ss_pred CCccccCCCccCCCCCCeeecCCeEeeCCccccCCCCcCCCCCCCCcEEEEecCCceeeeeEEEEEEEeC
Q psy6813 689 FHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK 758 (758)
Q Consensus 689 ~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~i~~p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~~~~~~ 758 (758)
+|||+|+|++.|||++.+++.|||+||+|++++. ...+++|.||||||||++||||||||+|+|+|+
T Consensus 741 ~~Stkg~G~~~Pdp~~~~~~~dgV~VP~Gk~~~~---~~~~~~L~yNEYIVYDvaQvrirYL~~vkf~~~ 807 (815)
T PLN03122 741 KVGVKGLGRKKTDESEHFKWRDDITVPCGRLIPS---EHKDSPLEYNEYAVYDPKQVSIRFLVGVKYEEK 807 (815)
T ss_pred CceeeecCCCcCCCccceecCCCeEEeCCCCccC---CCCCcccccCceEEEchhHEEEEEEEEEEeecc
Confidence 9999999999999999999999999999999974 234678999999999999999999999999986
No 3
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=100.00 E-value=1.2e-124 Score=1116.75 Aligned_cols=492 Identities=39% Similarity=0.713 Sum_probs=447.1
Q ss_pred CCceeEEEecCCcccCCCCCCCCceEEEEeCCcceeeeEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeeccccc-c
Q psy6813 63 KSGTVKLQIKDGLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGT-S 141 (758)
Q Consensus 63 ~~~~~k~~~k~~~~VD~~~~~~~~~~Vy~~~~~~Y~~~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~-~ 141 (758)
.+.++++++||+++||++|++.+++|||+++|.+| +|+||+||+++|+|+||+||||+++. ++.|+||+||||||+ .
T Consensus 486 ~~~~~~~~~kg~~~Vd~~~~~~~~~hVyed~g~iY-~~~Ln~td~~~n~NkfY~iQLL~~~~-~~~y~v~~rWGRVG~~~ 563 (981)
T PLN03123 486 SSSMVTVKVKGRSAVHEASGLQDTGHILEDGKSIY-NTTLNMSDLSTGVNSYYILQIIEEDK-GSDCYVFRKWGRVGNEK 563 (981)
T ss_pred ccccccccccCCccCCcccccccCceEEecCCeEe-eeeEecccccCCCcceEEEEEEEeCC-CCeEEEEEEecccCCcc
Confidence 45678889999999999999999999999999999 99999999999999999999999987 789999999999997 3
Q ss_pred CCCcccccCCCHHHHHHHHHHHHHhHhCCCCccchhhHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhh
Q psy6813 142 IGGTKVQDFKDVESAFDEFDRCFEKETGNTSGKDAKQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARA 221 (758)
Q Consensus 142 ~G~~~~~~f~~~~~A~~~F~k~F~~KTgn~w~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (758)
+||+++++| ++++|+.+|+++|++||||.|+.+. .+
T Consensus 564 ig~~~l~~~-~~~~A~~~F~kkF~eKTgn~W~~~~------------------------------------------~r- 599 (981)
T PLN03123 564 IGGNKLEEM-SKSDAIHEFKRLFLEKTGNPWESWE------------------------------------------QK- 599 (981)
T ss_pred cCccccCCC-CHHHHHHHHHHHHHHHhcCcccchh------------------------------------------hc-
Confidence 599999998 7899999999999999999996430 01
Q ss_pred hHHHHhhccccccchhhhhhhchhHHHHHHhhccCCCCCCchhhhhhhhhhhHHHHHHHhhccccccchhhhhhcCCCcc
Q psy6813 222 MEELKEYGIHVVPSKFIKDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSF 301 (758)
Q Consensus 222 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~s~~~~~~~y~il~~~~~~~~~~~~~~~~~~~i~~~~~ky 301 (758)
.+|.+ +||||
T Consensus 600 -------------~~F~k---------------------------------------------------------~pgKy 609 (981)
T PLN03123 600 -------------TNFQK---------------------------------------------------------QPGKF 609 (981)
T ss_pred -------------ccccc---------------------------------------------------------cCCce
Confidence 37988 89999
Q ss_pred eeccccCCCCCCCCCCchHHHHHHHHHHHHHHHhhhhccccccccccccccccCCCCCCCCCHHHHHHHHHHhcHHHHHH
Q psy6813 302 YTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKYEDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTA 381 (758)
Q Consensus 302 y~~i~~~~g~~~~~~~~~~~~v~~k~e~l~~~~~~~~e~~y~~~~~~~k~~~~~~~~~s~L~~~Vq~Lvk~I~d~~~~~~ 381 (758)
|+ ||+||+.++..+. + ....++|+|+++||+||++|||+++|++
T Consensus 610 ~~----------------------------------ie~dy~~~~~~~~-~-~~~~~~skL~~~vq~L~klIfd~~~m~~ 653 (981)
T PLN03123 610 YP----------------------------------LDIDYGVNEQPKK-K-AASGSKSNLAPRLVELMKMLFDVETYRA 653 (981)
T ss_pred eE----------------------------------EEeecCcccchhh-h-cccCCcCCCCHHHHHHHHHHhCHHHHHH
Confidence 99 8888876543211 1 1345789999999999999999999999
Q ss_pred HHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHhcccchhh-hHHHHHHHhhhhhhhcccccCCCCCCCCCCcHHHHH
Q psy6813 382 TLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEAD-VKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVV 460 (758)
Q Consensus 382 ~l~e~~~D~~kmPLGkLS~~qI~~a~~iL~ei~~~l~~~~~~~-~~~~li~~lsn~fYtlIPh~fg~~~~~lid~~~~l~ 460 (758)
+|++|+||+.+||||+||++||.+||+||++|+++|+...... .....+.+|||+|||+|||+ +||+|++.+.|+
T Consensus 654 ~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~ei~~~l~~~~~~~~~~~~~l~~lSn~fYtlIPh~----~pp~I~~~~~ik 729 (981)
T PLN03123 654 AMMEFEINMSEMPLGKLSKANIQKGFEALTEIQNLLKENDQDPSIRESLLVDASNRFFTLIPSI----HPHIIRDEDDLK 729 (981)
T ss_pred HHHHccCCcccCCCccccHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhccEecCCCC----CCCcCCCHHHHH
Confidence 9999999999999999999999999999999999998654221 11244599999999999995 699999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHhhcCcEEEEcCCCChHHHHHHHHHHhcccCCCcCcccccceeEEee
Q psy6813 461 QKMEMIDAMTQIELAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVS 540 (758)
Q Consensus 461 ~k~~lLe~L~dIe~A~~li~~~~~~~~~Pld~~Y~~L~~~L~~Ld~~S~Ey~~I~ky~~nT~~~~h~~~~l~I~~IfrV~ 540 (758)
++++||++|.||++|++|+... ....||||.+|++|+|+|++|+++|+||++|++|+.+||+++|..|+++|++||+|+
T Consensus 730 ~k~~lLe~L~dieiA~~ll~~~-~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~Yl~nT~~~th~~y~l~v~~IF~v~ 808 (981)
T PLN03123 730 SKVKMLEALQDIEIASRLVGFD-VDEDDSLDDKYKKLHCDISPLPHDSEDYKLIEKYLLTTHAPTHTDWSLELEEVFSLE 808 (981)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-CcCCCchHHHHHhcCCeEEECCCCCHHHHHHHHHHHhcCCCccccccceeeEEEEec
Confidence 9999999999999999999765 356899999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcccccc-ccCCeEEeeccCCCcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCCCCCccchh
Q psy6813 541 RHGEDKRFKPFE-KLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLL 619 (758)
Q Consensus 541 r~~E~~rF~~~k-~l~N~~LLwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~glL 619 (758)
|.+|.+||.+|. .++|++|||||||.+||+|||++||||+||+||++|||||+||||||++|||++||+++.++++|
T Consensus 809 r~gE~~rf~~~~~~~~Nr~LLwHGSr~~N~~gILs~GLriaPpeap~tGymfGkGIYFAD~~SKSanYc~~~~~~~~g-- 886 (981)
T PLN03123 809 REGEFDKYAPYKEKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCYTDRKNPVG-- 886 (981)
T ss_pred ccccccchhhHhhcCCCceEEEcCCCcccHHHHhhccCccCCccccccCccccceeEecchhhhhhhhhcccCCCCce--
Confidence 999999999995 69999999999999999999999999999999999999999999999999999999887655554
Q ss_pred hHHHHhcccccceeecccccccccccCcccCccccCCCCCceeEEEEEeecCcceeecccccccCCCCCCCccccCCCcc
Q psy6813 620 LLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNC 699 (758)
Q Consensus 620 lL~eVAlGa~~~g~mfGkGiYFAd~~SkSa~Yc~~~~~~~~r~mLLceVALG~~~e~~~a~~~~~~p~G~~Sv~g~G~~~ 699 (758)
+|||||||||++++++.++++++||+|+|||+|+|++.
T Consensus 887 ------------------------------------------~llLceVaLG~~~e~~~~~~~~~~p~g~~S~~g~G~~~ 924 (981)
T PLN03123 887 ------------------------------------------LMLLSEVALGEIYELKKAKYMDKPPRGKHSTKGLGKTV 924 (981)
T ss_pred ------------------------------------------EEEEEEEecCChhhhccccccccCCCCceeeeecCCCC
Confidence 59999999999999999999999999999999999999
Q ss_pred CCCCCCeeecCCeEeeCCccccCCCCcCCCCCCCCcEEEEecCCceeeeeEEEEEEEeC
Q psy6813 700 PDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK 758 (758)
Q Consensus 700 Pdp~~~~~~~dgv~vP~G~~i~~p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~~~~~~ 758 (758)
|||++.++++|||+||+|++++. ...+++|.||||||||++||||||||+|+|+|+
T Consensus 925 Pd~~~~~~~~dgv~vP~Gk~~~~---~~~~~~L~yNEYIVYd~~Qvr~rYLv~vkf~~~ 980 (981)
T PLN03123 925 PQESEFVKWRDDVVVPCGKPVPS---KVKASELMYNEYIVYNTAQVKLQFLLKVRFKHK 980 (981)
T ss_pred CCcccceecCCceEeeCCCCccC---cccCCccccCceEEechhHEEEEEEEEEEeecc
Confidence 99999999999999999999873 334678999999999999999999999999996
No 4
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.
Probab=100.00 E-value=1.1e-89 Score=745.10 Aligned_cols=346 Identities=48% Similarity=0.889 Sum_probs=319.6
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHhhhhhh
Q psy6813 359 ECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFY 438 (758)
Q Consensus 359 ~s~L~~~Vq~Lvk~I~d~~~~~~~l~e~~~D~~kmPLGkLS~~qI~~a~~iL~ei~~~l~~~~~~~~~~~li~~lsn~fY 438 (758)
+|+|+++||+||++|||+++|+.+|.++++|+.+||||+||++||++||+||.+|++++++.... ..+ +.+||++||
T Consensus 1 ~skL~~~vq~l~~~I~d~~~~~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~~i~~~l~~~~~~--~~~-l~~ls~~FY 77 (347)
T cd01437 1 KSKLDKPVQELIKLIFDVEMMKKAMTELKIDASKMPLGKLSKNQIQKGYEVLKEIEEALKRGSSQ--GSQ-LEELSNEFY 77 (347)
T ss_pred CCCcCHHHHHHHHHHcCHHHHHHHHHHcCCCcccCCCcccCHHHHHHHHHHHHHHHHHHhccccc--hHH-HHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999876521 234 489999999
Q ss_pred hcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHhhcCcEEEEcCCCChHHHHHHHHH
Q psy6813 439 THIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYV 518 (758)
Q Consensus 439 tlIPh~fg~~~~~lid~~~~l~~k~~lLe~L~dIe~A~~li~~~~~~~~~Pld~~Y~~L~~~L~~Ld~~S~Ey~~I~ky~ 518 (758)
|+|||+||+.+||+|++.+.|++|.+||++|.||++|++|+....+...||+|.+|++|+|+|++|+++|+||++|.+||
T Consensus 78 tlIPh~fg~~~p~~i~~~~~l~~k~~lle~L~die~a~~l~~~~~~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~y~ 157 (347)
T cd01437 78 TLIPHDFGMSKPPVIDNEELLKAKRELLEALRDIEIASKLLKDDEDDSDDPLDANYEKLKCKIEPLDKDSEEYKIIEKYL 157 (347)
T ss_pred HhCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcchhHHHHcCeeEEECCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876667889999999999999999999999999999999
Q ss_pred HhcccCCCcCcccccceeEEeecchhhhccccccccCCeEEeeccCCCcChHHHhhcCCccCCCCCCccccccccceEec
Q psy6813 519 QNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFA 598 (758)
Q Consensus 519 ~nT~~~~h~~~~l~I~~IfrV~r~~E~~rF~~~k~l~N~~LLwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFA 598 (758)
.+|++.+|. |+++|.+||+|+|.+|+++|+++++.+|+++||||||.+||.+||++||+++|++++.+|+|||+|||||
T Consensus 158 ~~t~~~~~~-~~~~V~~If~i~r~~e~~~F~~~~~~~n~~lLwHGsr~~n~~~Il~~Gl~~~~~~~~~~g~mfGkGIYFA 236 (347)
T cd01437 158 KNTHAPTTE-YTVEVQEIFRVEREGETDRFKPFKKLGNRKLLWHGSRLTNFVGILSQGLRIAPPEAPVTGYMFGKGIYFA 236 (347)
T ss_pred HhcCCCCCC-cceeEEEEEEecCCCchhhhHHhhccCCeEEEEcCCChhhHHHHHhcCCCcCccccccCCccccceEeec
Confidence 999988764 8999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCccchhhHHHHhcccccceeecccccccccccCcccCccccCCCCCceeEEEEEeecCcceeecc
Q psy6813 599 DSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQ 678 (758)
Q Consensus 599 D~~sKSa~Yc~~~~~~~~glLlL~eVAlGa~~~g~mfGkGiYFAd~~SkSa~Yc~~~~~~~~r~mLLceVALG~~~e~~~ 678 (758)
|++|+|++||+++.. ++.++|||||||||+++++..
T Consensus 237 d~~skS~~Y~~~~~~--------------------------------------------~~~~~mlLc~V~lG~~~~~~~ 272 (347)
T cd01437 237 DMFSKSANYCHASAS--------------------------------------------DPTGLLLLCEVALGKMNELKK 272 (347)
T ss_pred CchHhhhhhcccCCC--------------------------------------------CCceEEEEEEEecCceehhcc
Confidence 998888888876532 345679999999999999999
Q ss_pred ccccc-CCCCCCCccccCCCccCCCCCCeeecCCeEeeCCccccCCCCcCCCCCCCCcEEEEecCCceeeeeEEEEE
Q psy6813 679 AEFVT-KLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVR 754 (758)
Q Consensus 679 a~~~~-~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~i~~p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~~ 754 (758)
+++.. +||+|||||+|+|++.|||++.+++.|||+||+|++++.+.. .+++|.||||||||++||||||||+|+
T Consensus 273 ~~~~~~~~p~g~~Sv~g~G~~~p~~~~~~~~~~gv~vP~G~~~~~~~~--~~~~l~~nEyiVYd~~Qir~rYLv~vk 347 (347)
T cd01437 273 ADYMAKELPKGKHSVKGLGKTAPDPSEFEIDLDGVVVPLGKPVPSGHK--TDTSLLYNEYIVYDVAQVRLKYLLEVK 347 (347)
T ss_pred CChhhccCCCCceeeEeccCCCCCchhheeccCCeEeeCCccccCCcC--CCcccccCCeEeechhHEEEEEEEEeC
Confidence 88654 499999999999999999999988899999999999974321 268899999999999999999999985
No 5
>KOG1037|consensus
Probab=100.00 E-value=8.5e-65 Score=575.94 Aligned_cols=517 Identities=32% Similarity=0.490 Sum_probs=435.2
Q ss_pred CCCCCCcceeecccccccccccccccccCceeeeeeecccccchhhhhhhhhhcccccccCCCceeEEEecCCcccCCCC
Q psy6813 2 SKHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINARIGEAKDVKLKSQEKSVFKSKSGTVKLQIKDGLAVDPDS 81 (758)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~~VD~~~ 81 (758)
..+..|+..+|++++++.|+.|...|.++.+|+++.++...|++...- ...+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~--------------------------~~~~s~ 56 (531)
T KOG1037|consen 3 NTPIALDNASVLKSEDLNSGTCEHVINKDEFRKGIKELKLIFDGDVDK--------------------------WKHTSC 56 (531)
T ss_pred CCCcccccchhhhhhchhccCCcccccchhhhhhhhhhhhccccccCc--------------------------cccccc
Confidence 457789999999999999999999999999999988887555544321 123333
Q ss_pred CCCCceEEEEeCCcceeeeEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeeccccccCCCcccccCC-CHHHHHHHH
Q psy6813 82 GLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFK-DVESAFDEF 160 (758)
Q Consensus 82 ~~~~~~~Vy~~~~~~Y~~~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~~~G~~~~~~f~-~~~~A~~~F 160 (758)
.+ ..+.+..+..+| ...|+++.+..++|+||.+|+++.+. ...+..|.+||||+. .|++.+.... +...|.+.|
T Consensus 57 ~~--~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~l~~d~-~~~~~~~~~~~~v~~-~~~s~~~~~~~~~~~~~~~~ 131 (531)
T KOG1037|consen 57 FL--KKDHLIRGPEVK-VPGLNQTNVENENNKEYTEEELEWDE-QQKKRKTVEEGGVTG-KGQSGIVKKSKSLDKAKKPF 131 (531)
T ss_pred cc--Cccccccccccc-ccccccccccccccchhhhhhhhccc-ccceeeeeeeccccc-ccccccchhhhhhhhccchh
Confidence 33 334555566788 99999999999999999999999998 668999999999996 7898888775 788899999
Q ss_pred HHHHHhHhCCCCccchhhHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccchhhhh
Q psy6813 161 DRCFEKETGNTSGKDAKQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFIKD 240 (758)
Q Consensus 161 ~k~F~~KTgn~w~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 240 (758)
+..|..+|.+.|+.|..+ +.+|+. ++.+. .++|.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~------~~~~~~----------------~~~~~----------------------~~~~~~- 166 (531)
T KOG1037|consen 132 EIKSYKLTKNGMETRDEF------IPLGHS----------------YEEED----------------------KKNFSK- 166 (531)
T ss_pred hhhcchhhhhhhhhhhhh------hcccch----------------hHHHh----------------------hhhhcc-
Confidence 999999999999998211 111110 00000 011222
Q ss_pred hhchhHHHHHHhhccCCCCCCchhhhhhhhhhhHHHHHHHhhccccccchhhhhhcCCCcceeccccCCCCCCCCCCchH
Q psy6813 241 AANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNK 320 (758)
Q Consensus 241 ~~~~~~~~~~~~~~~~~w~~~~s~~~~~~~y~il~~~~~~~~~~~~~~~~~~~i~~~~~kyy~~i~~~~g~~~~~~~~~~ 320 (758)
.+..|++
T Consensus 167 --------------------------------------------------------~~~~~~~----------------- 173 (531)
T KOG1037|consen 167 --------------------------------------------------------CRSCFSP----------------- 173 (531)
T ss_pred --------------------------------------------------------cccccCh-----------------
Confidence 4444444
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccccccccccCCCCCCCCCHHHHHHHHHHhcHHHHHHHHHhcccccc-CCCCCCCC
Q psy6813 321 QLVVQKMEMIDAMTQKLLDVKYEDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMD-RMPLGKLS 399 (758)
Q Consensus 321 ~~v~~k~e~l~~~~~~~~e~~y~~~~~~~k~~~~~~~~~s~L~~~Vq~Lvk~I~d~~~~~~~l~e~~~D~~-kmPLGkLS 399 (758)
+++++. .|+..|++++..||++++|..++++|.+|.. ++|+|++|
T Consensus 174 -----------------~~~~~~-----------------~ld~~~~~~~~~i~~~~~m~~~~~~~~~~~~l~~p~g~~s 219 (531)
T KOG1037|consen 174 -----------------IKTDSG-----------------RLDMSVKELIKNIFDVEEMIKALMEMQLDHKLKKPLGKLS 219 (531)
T ss_pred -----------------hhcccc-----------------cccccccccccccccHHHHHHHHHhhccchhhhCCCCccc
Confidence 333332 1888999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHhhhhhhhcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6813 400 AKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTIK 479 (758)
Q Consensus 400 ~~qI~~a~~iL~ei~~~l~~~~~~~~~~~li~~lsn~fYtlIPh~fg~~~~~lid~~~~l~~k~~lLe~L~dIe~A~~li 479 (758)
..||.++|++|..+.+.+..... ..+ +.+++++||++|||+||+..|+. .+.++|+++++|++|+.+.
T Consensus 220 ~~~i~~~~~~~~~~k~~~~~~~~---~~~-l~~~~~~f~~~ip~~~~~~~~~~--------~~~~~le~~~~i~~a~~~~ 287 (531)
T KOG1037|consen 220 LNDINKAYELLLKVKEALKLGKI---GEQ-LAKASTEFYTLIPHDFGMRKPPN--------EKQEALEALLDIELAYGLR 287 (531)
T ss_pred hhhhhhhhhhhhhhhcccccCCc---HHH-HHHHhhhhhhhcCCCCCcCCCch--------hhHHHHHHhhhhhhhhhhh
Confidence 99999999999999999987652 234 58999999999999999988776 7889999999999999998
Q ss_pred ccCC-CCC-CCCchhHHhhcCcEEEEcCCCChHHHHHHHHHHhcccCCCcCcccccceeEEeecchhhhccccccccCCe
Q psy6813 480 QEGP-SAG-VHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNK 557 (758)
Q Consensus 480 ~~~~-~~~-~~Pld~~Y~~L~~~L~~Ld~~S~Ey~~I~ky~~nT~~~~h~~~~l~I~~IfrV~r~~E~~rF~~~k~l~N~ 557 (758)
.... ... .+|++.+|+.|+|.+..++.+++||++|.+|+.++|..+|..+.+++.+|+++.+..|..+|.....+.|+
T Consensus 288 ~~~~~~~~~~~Pl~~~y~~l~c~~~~~~~~~~e~kmi~~~~~~~~~~~~~~~~~~~~~l~k~~~~~e~~~~~~~~~~~~r 367 (531)
T KOG1037|consen 288 KGDDVDATCDDPLDKHYKDLKCKIEKLDKDSEEFKMIAQYVEKTHAKTSTVKVVQIADLKKVNEKNEADRKVDISELINR 367 (531)
T ss_pred hccccccCCCChhhhHHHhhhhhhccccccchhHHHHHHHHHhhccccCccCceeehhHHHhhhcccccccccCcccccc
Confidence 8653 345 77999999999999999999999999999999999999998888889999999999999999988999999
Q ss_pred EEeeccCCCcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCCCCCccchhhHHHHhcccccceeeccc
Q psy6813 558 HLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGK 637 (758)
Q Consensus 558 ~LLwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~glLlL~eVAlGa~~~g~mfGk 637 (758)
++|||||+..|+++|+..|++++|++++++|+|||+||||||++++|++||++....++
T Consensus 368 ~llw~gs~~~n~a~~l~~g~~~~~~~~~~~g~~~gkgiyfa~~~sks~~y~~~~~~k~~--------------------- 426 (531)
T KOG1037|consen 368 QLLWHGSRFGNLAGILSPGLRLAPSEAPVTGYMFGKGIYFADAASKSANYCVTMKGKPT--------------------- 426 (531)
T ss_pred cchhcccceeeeeccccCCceecCCCCCceeeccccceEeeeecccccccccccccCch---------------------
Confidence 99999999999999999999999999999999999999999999999999998754444
Q ss_pred ccccccccCcccCccccCCCCCceeEEEEEeecCcceeeccccc-ccCCCCCCCccccCCCccCCCCCCeeecCCeEeeC
Q psy6813 638 GIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEF-VTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPL 716 (758)
Q Consensus 638 GiYFAd~~SkSa~Yc~~~~~~~~r~mLLceVALG~~~e~~~a~~-~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~ 716 (758)
++||+|+||||+++.+..+.+ .+.+|.|+|||+|+|+++|+++....+++++.+|+
T Consensus 427 -----------------------~~ll~~~~alg~~~~~~~~~~~~~~~~~~~~sv~~~g~~~p~~t~~~~~~~~~~~~~ 483 (531)
T KOG1037|consen 427 -----------------------GHLLLCDVALGKEQDLVESIPSLTELPAGKDSVKGVGKTAPDSTLSEDLEDDVDVPL 483 (531)
T ss_pred -----------------------hhhhhhhhhccchhhhhcCCcccccCCCCCcchhhhcccCCCchhhccccccccccc
Confidence 449999999999988877664 55689999999999999999999999999999999
Q ss_pred CccccCCCCcCCCCCCCCcEEEEecCCceeeeeEEEEEEEeC
Q psy6813 717 GTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK 758 (758)
Q Consensus 717 G~~i~~p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~~~~~~ 758 (758)
|.++.... ...+..+.||||+||+++|++++|+++++++|.
T Consensus 484 ~~~~~~~~-~~~~~~l~y~e~~v~~~~q~~~~~~~kv~~~~~ 524 (531)
T KOG1037|consen 484 GKIKLTEE-PHKDSLLEYNEYIVYNVEQVQIRYLVKVKMDYS 524 (531)
T ss_pred cccccccc-ccchhhhhhhhhhhccHhhhceeeeeEeehhhh
Confidence 99876432 335566789999999999999999999999873
No 6
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself. PARP, also known as poly(ADP-ribose) synthetase and poly(ADP-ribose) transferase, transfers the ADP-ribose moiety from its substrate, nicotinamide adenine dinucleotide (NAD), to carboxylate groups of aspartic and glutamic residues. Whereas some PARPs might function in genome protection, others appear to play different roles in the cell, including telomere replication and cellular transport. PARP-1 is a multifunctional enzyme. The polypeptide has a highly conserved modular organisation consisting of an N-terminal DNA-binding domain, a central regulating segment, and a C-terminal or F region accommodating the catalytic centre. The F region is composed of two parts: a purely alpha-helical N- terminal domain (alpha-hd), and the mixed alpha/beta C-terminal catalytic domain bearing the putative NAD binding site. Although proteins of the PARP family are related through their PARP catalytic domain, they do not resemble each other outside of that region, but rather, they contain unique domains that distinguish them from each other and hint at their discrete functions. Domains with which the PARP catalytic domain is found associated include zinc fingers, SAP, ankyrin, BRCT, Macro, SAM, WWE and UIM domains [, , ]. The alpha-hd domain is about 130 amino acids in length and consists of an up-up-down-up-down-down motif of helices. It is thought to relay the activation signal issued on binding to damaged DNA [, ]. The PARP catalytic domain is about 230 residues in length. Its core consists of a five-stranded antiparallel beta-sheet and four-stranded mixed beta-sheet. The two sheets are consecutive and are connected via a single pair of hydrogen bonds between two strands that run at an angle of 90 degrees. These central beta-sheets are surrounded by five alpha-helices, three 3(10)-helices, and by a three- and a two-stranded beta-sheet in a 37-residue excursion between two central beta-strands [, ]. The active site, known as the 'PARP signature' is formed by a block of 50 amino acids that is strictly conserved among the vertebrates and highly conserved among all species. The 'PARP signature' is characteristic of all PARP protein family members. It is formed by a segment of conserved amino acid residues formed by a beta-sheet, an alpha-helix, a 3(10)-helix, a beta-sheet, and an alpha-helix [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity; PDB: 2PQF_F 4F0D_A 1PAX_A 1EFY_A 1A26_A 2PAW_A 4PAX_A 3PAX_A 2PAX_A 3P0N_A ....
Probab=100.00 E-value=3.6e-42 Score=350.32 Aligned_cols=206 Identities=35% Similarity=0.603 Sum_probs=178.5
Q ss_pred cCcEEEEcCCCChHHHHHHHHHHhcccCCCcCcccccceeEEeecchhhhccccccccCCeEEeeccCCCcChHHHhhcC
Q psy6813 497 LQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKG 576 (758)
Q Consensus 497 L~~~L~~Ld~~S~Ey~~I~ky~~nT~~~~h~~~~l~I~~IfrV~r~~E~~rF~~~k~l~N~~LLwHGSr~~N~~gIL~qG 576 (758)
|+|+|++|+++|+||+.|+++|.+++.+.|. +.++|.+||+|++..++++|+.+++.+|+++|||||+..|+.+|+++|
T Consensus 1 L~~~l~~l~~~s~ey~~I~~~f~~~~~~~~~-~~~~I~~I~~i~~~~~~~~f~~~~~~~n~~~L~HGt~~~~~~~I~~~G 79 (206)
T PF00644_consen 1 LNCELVPLEPDSEEYKEIEKYFKKTWKPVHK-YKPKIKKIFRIQNPSLWERFEEKKKEGNERLLFHGTSAENICSILRNG 79 (206)
T ss_dssp TTEEEEEEETTSHHHHHHHHHHHHTSTSTTT-EEEEEEEEEEEEEHHHHHHHHHHHHSSSEEEEEEEETGGGHHHHHHHS
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHhHCCCCCC-CCCEEEEEEEEcChhHHHHHHHHHhcCCceEEeCCCChhhccchhcCC
Confidence 7999999999999999999999999886654 578999999999999999999888889999999999999999999999
Q ss_pred CccCCCCCCccccccccceEeccccccccccccCCCCCccchhhHHHHhcccccceeecccccccccccCcccCccccCC
Q psy6813 577 LCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNS 656 (758)
Q Consensus 577 Lriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~glLlL~eVAlGa~~~g~mfGkGiYFAd~~SkSa~Yc~~~~ 656 (758)
|++.++.++.+|.|||+|||||+.+++|+.||....
T Consensus 80 ~~~~~~~~~~~g~~fG~GiYfs~~~s~s~~Y~~~~~-------------------------------------------- 115 (206)
T PF00644_consen 80 FKIDPRKASRNGGMFGKGIYFSDNSSKSAQYSKPSD-------------------------------------------- 115 (206)
T ss_dssp S---TTTSCGGCSTTSSSEEEBSSHHHHHTTSTSES--------------------------------------------
T ss_pred CccCccccccCCceeeeEEEeCcchhhhcccCCCcc--------------------------------------------
Confidence 999888888889999999999998888888887632
Q ss_pred CCCceeEEEEEeecCcceeecccccccCCCCCCCccccCCCccCCCCCCeeecCCeEeeCCccccCCCCcCCCCCCCCcE
Q psy6813 657 TNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNE 736 (758)
Q Consensus 657 ~~~~r~mLLceVALG~~~e~~~a~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~i~~p~~~~~~~~l~ynE 736 (758)
.++.++||||+|+||++.++...+.+..+|+|+|||+|.|+..| ...+..+| +|+|++.. ....+..+.+||
T Consensus 116 ~~g~~~~llc~V~lG~~~~~~~~~~~~~~~~g~~sv~~~~~~~~---~~~~~~~g--~p~~~~~~---~~~~~~~~~~~e 187 (206)
T PF00644_consen 116 SNGERFMLLCRVALGKPYELKNDNPMTSPPPGYDSVKGVGSKTP---EDTIDEDG--VPSGKGYV---SEYDGSSLNPNE 187 (206)
T ss_dssp SSSEEEEEEEEEEECSEEEESSCCTGSSGCTTESEEEECESEEE---GGEEEETT--ETTSSEEE---SCEESSSSSCSE
T ss_pred CCcceeeeEEEEEeccceeeccCcccccccCCcceecCCCccCC---ccccccCC--CCCCCCcc---CccCCCccCCCE
Confidence 23457799999999999999887778899999999999998877 44566778 89998854 223345699999
Q ss_pred EEEecCCceeeeeEEEEEE
Q psy6813 737 FIVYDPAQVKIRYILKVRF 755 (758)
Q Consensus 737 yIVYd~~Qi~~rYLV~~~~ 755 (758)
|||||++||+|||||+|+|
T Consensus 188 yVVy~~~q~~p~YLi~y~~ 206 (206)
T PF00644_consen 188 YVVYDNSQVYPEYLITYKF 206 (206)
T ss_dssp EEESSGGGEEEEEEEEEEE
T ss_pred EEEEcccceeeEEEEEEEC
Confidence 9999999999999999997
No 7
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT). Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).
Probab=100.00 E-value=9.5e-34 Score=288.74 Aligned_cols=194 Identities=28% Similarity=0.426 Sum_probs=151.4
Q ss_pred hhcCcEEEEcCCCChHHHHHHHHHHhcccCCCcC-------cccccceeEEeecchhhhcccccc--------ccCCeEE
Q psy6813 495 EKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHRE-------YSLNIEAIFEVSRHGEDKRFKPFE--------KLGNKHL 559 (758)
Q Consensus 495 ~~L~~~L~~Ld~~S~Ey~~I~ky~~nT~~~~h~~-------~~l~I~~IfrV~r~~E~~rF~~~k--------~l~N~~L 559 (758)
.+.++.|..|.+.+.||+.|++.|+.|.+..|.+ -+.+|..|-||++...|++|...+ +..|+++
T Consensus 12 ~~~~~~~~~l~p~~~e~~~v~~~~~~t~~~~~~~~~~~~~~~~~~I~kI~RIQN~~Lw~~y~~kk~~~~~~~~~~~ne~~ 91 (223)
T cd01438 12 VNQGTILLDLAPDDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNIIRIQKVVNKKLRERYCHRQKEIAEENHNHHNERM 91 (223)
T ss_pred CCccceEEEecCCCchHHHHHHHHHhhccccccCcccccccccccEEEEEecCCHHHHHHHHHHHHHHHHhhCCCcceEE
Confidence 3567889999999999999999999997653321 157899999999999999986432 4689999
Q ss_pred eeccCCCcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCCCCCccchhhHHHHhcccccceeeccccc
Q psy6813 560 LWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGI 639 (758)
Q Consensus 560 LwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~glLlL~eVAlGa~~~g~mfGkGi 639 (758)
|||||+..| +|+++||+.+.+ .+|+|||+|||||+++|+|++||++...+ .|. |
T Consensus 92 LfHGt~~~~--~I~~~GFd~r~~---~~g~~fGkGiYFA~~askS~~Y~~~~~~~-~~~----------p---------- 145 (223)
T cd01438 92 LFHGSPFIN--AIIHKGFDERHA---YIGGMFGAGIYFAENSSKSNQYVYGIGGG-TGC----------P---------- 145 (223)
T ss_pred EeecCcchh--HHHHhCCCcccc---ccCceeeeeeeeccchhhhcccccccccc-ccC----------c----------
Confidence 999998776 899999985432 36899999999999999999999864211 110 0
Q ss_pred ccccccCcccCccccCCCCCceeEEEEEeecCcceeecccccccCCCCCCCccccCCCccCCCCCCeeecCCeEeeCCcc
Q psy6813 640 YFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTL 719 (758)
Q Consensus 640 YFAd~~SkSa~Yc~~~~~~~~r~mLLceVALG~~~e~~~a~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~ 719 (758)
.....+ .|| ..|+||||+|+||++.+...+..+.++|+|||||+|. |+
T Consensus 146 ---~~~~~~-~~~------~~~~MfLcrVlLGk~~~~~~~~~~~~~P~G~dSv~g~------Ps---------------- 193 (223)
T cd01438 146 ---THKDRS-CYV------CHRQMLFCRVTLGKSFLQFSAMKMAHAPPGHHSVIGR------PS---------------- 193 (223)
T ss_pred ---cccccc-ccc------cceeEEEEEEEecceeeccCCcccCCCCCCCcceEcC------CC----------------
Confidence 000000 011 1478999999999999887777888999999999974 21
Q ss_pred ccCCCCcCCCCCCCCcEEEEecCCceeeeeEEEEEE
Q psy6813 720 IDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRF 755 (758)
Q Consensus 720 i~~p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~~~ 755 (758)
...+.||||||||.+||+|+|||+|+.
T Consensus 194 ---------~~~~~~~EfVVyd~~Q~YPeYLI~y~~ 220 (223)
T cd01438 194 ---------VNGLAYAEYVIYRGEQAYPEYLITYQI 220 (223)
T ss_pred ---------CCCcccCEEEEECCCcEeeEEEEEEEe
Confidence 124678999999999999999999985
No 8
>PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The regulatory domain of the polymerase is almost always associated with the C-terminal catalytic domain (see IPR001290 from INTERPRO). This domain consists of a duplication of two helix-loop-helix structural repeats [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity, 0006471 protein ADP-ribosylation; PDB: 1GS0_B 3FHB_A 3C49_A 3CE0_A 3C4H_A 3KCZ_B 3KJD_B 3L3M_A 3GJW_A 1UK1_A ....
Probab=99.98 E-value=2.2e-32 Score=260.98 Aligned_cols=133 Identities=35% Similarity=0.678 Sum_probs=115.7
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHhhhhhh
Q psy6813 359 ECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFY 438 (758)
Q Consensus 359 ~s~L~~~Vq~Lvk~I~d~~~~~~~l~e~~~D~~kmPLGkLS~~qI~~a~~iL~ei~~~l~~~~~~~~~~~li~~lsn~fY 438 (758)
+|+||++||+||++|||+++|+++|.++++|..+||||+||++||.+||+||++|+++|+... .... +.++||+||
T Consensus 1 ~skL~~~Vq~Li~~If~~~~~~~~m~e~~~D~~kmPLGkLS~~qI~~g~~iL~~i~~~l~~~~---~~~~-i~~lsn~fY 76 (133)
T PF02877_consen 1 KSKLPPEVQDLIKLIFDVEMMKQAMKEMGYDTKKMPLGKLSKEQIEKGYEILKEIEELLKEQE---RRSK-IEDLSNRFY 76 (133)
T ss_dssp --SSTHHHHHHHHHHT-HHHHHHHHHHTTB-TTTSTGGGB-HHHHHHHHHHHHHHHHHHHTTS---SSHH-HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCchhcCHHHHHHHHHHHHHHHHHHHccc---cHHH-HHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999998332 2334 489999999
Q ss_pred hcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHh
Q psy6813 439 THIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTIKQEGPSAGVHPLVNCYE 495 (758)
Q Consensus 439 tlIPh~fg~~~~~lid~~~~l~~k~~lLe~L~dIe~A~~li~~~~~~~~~Pld~~Y~ 495 (758)
|+|||+||+.+||+|++.+.|+++.+||++|.||++|++++..+.....||+|++|+
T Consensus 77 tlIPh~fg~~~~~~I~~~~~l~~k~~lle~L~die~A~~l~~~~~~~~~~plD~~Y~ 133 (133)
T PF02877_consen 77 TLIPHNFGRSRPPVIDTEEKLKEKLELLEALLDIEIASKLLKDAQDEKINPLDYQYK 133 (133)
T ss_dssp HHSTB-STTS-S--STSHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCSSTHHHHHHH
T ss_pred HHCCCcccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhcC
Confidence 999999999999999999999999999999999999999999876666999999995
No 9
>cd08003 WGR_PARP2_like WGR domain of poly(ADP-ribose) polymerases. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of human PARP-2 and similar proteins. Similar to PARP-1, PARP-2 is ubiquitously expressed and it
Probab=99.97 E-value=6e-31 Score=239.88 Aligned_cols=85 Identities=25% Similarity=0.479 Sum_probs=82.1
Q ss_pred EEEEeCCcceeeeEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeeccccccCCCcccccCCC-HHHHHHHHHHHHHh
Q psy6813 88 ELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKD-VESAFDEFDRCFEK 166 (758)
Q Consensus 88 ~Vy~~~~~~Y~~~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~~~G~~~~~~f~~-~~~A~~~F~k~F~~ 166 (758)
|||++++.+| +|||+|||+++|+|+||+||||+++. ++.|+||+||||||+ .||+++++|++ +++|+++|+++|++
T Consensus 1 hVy~~~~~vy-~a~Ln~td~~~n~Nkfy~lQlle~~~-~~~y~~~~rWGRVG~-~G~~~l~~~~~~l~~A~~~F~k~F~~ 77 (103)
T cd08003 1 HVYEEGDDVY-DAMLNQTNIQQNNNKYYIIQLLEDDA-EKIYSVWFRWGRVGK-KGQSSLVPCGSDLEQAKSLFEKKFLD 77 (103)
T ss_pred CEEecCCeEE-EEEEEecccCCCCcceEEEEEEEeCC-CCeEEEEEeEccccc-cccceeccCCCCHHHHHHHHHHHHHH
Confidence 7999989999 99999999999999999999999988 889999999999997 89999999985 99999999999999
Q ss_pred HhCCCCccc
Q psy6813 167 ETGNTSGKD 175 (758)
Q Consensus 167 KTgn~w~~r 175 (758)
||||.|++|
T Consensus 78 KTgn~W~~R 86 (103)
T cd08003 78 KTKNEWEDR 86 (103)
T ss_pred HhCCchhhc
Confidence 999999999
No 10
>cd08001 WGR_PARP1_like WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of vertebrate PARP-1 and similar proteins, including Arabidopsis thaliana
Probab=99.95 E-value=1.4e-28 Score=225.34 Aligned_cols=87 Identities=38% Similarity=0.777 Sum_probs=83.8
Q ss_pred eEEEEeCCcceeeeEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeeccccccCCCcccccCCCHHHHHHHHHHHHHh
Q psy6813 87 TELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEK 166 (758)
Q Consensus 87 ~~Vy~~~~~~Y~~~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~~~G~~~~~~f~~~~~A~~~F~k~F~~ 166 (758)
+|||++++.+| +|+|+++|+.+|+|+||+||||+++. .+.|+||++|||||+..||+++++|.++++|+.+|+++|++
T Consensus 1 ~~v~~~~~~~y-~~~L~~~d~~~n~n~fY~lQll~~~~-~~~y~~~~~WGRiG~~~Gq~~~~~~~~~~~A~~~F~k~f~~ 78 (104)
T cd08001 1 AHVLEEGGNLY-SAVLGLVDIQTGTNSYYKLQLLEHDK-GNRYWVFRSWGRVGTTIGGNKLEEFSSLEEAKMAFEELYEE 78 (104)
T ss_pred CeEEeCCCcEE-EEEEECcccCCCCcceEEEEEEEECC-CCEEEEEEEECccCCccCceEccCCCCHHHHHHHHHHHHHH
Confidence 58999999999 99999999999999999999999998 78999999999999756999999999999999999999999
Q ss_pred HhCCCCccc
Q psy6813 167 ETGNTSGKD 175 (758)
Q Consensus 167 KTgn~w~~r 175 (758)
||||+|++|
T Consensus 79 KTgn~w~~r 87 (104)
T cd08001 79 KTGNDFENR 87 (104)
T ss_pred HhCCCCccc
Confidence 999999999
No 11
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=99.95 E-value=1.1e-29 Score=304.45 Aligned_cols=395 Identities=21% Similarity=0.309 Sum_probs=214.8
Q ss_pred hhHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccchhhhhhhchh-H--HH--HHH
Q psy6813 177 KQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFIKDAANGK-V--LE--LIE 251 (758)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~--~~--~~~ 251 (758)
.+.+|+.|+.+||++..++++.+++.|+| .+++++ ..+|.+|++.||+||+.+|..+....+ . .. .+.
T Consensus 409 ~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt-~e~~k~------~~kv~qAk~~~ipIVsedwL~ds~~~~~~~p~~~y~~~ 481 (981)
T PLN03123 409 VTEWKAKIEEAGGVFHATVKKDTNCLVVC-GELDDE------DAEMRKARRMKIPIVREDYLVDCFKKKKKLPFDKYKLE 481 (981)
T ss_pred HHHHHHHHHhcCCEEeeeccCCceEEEcc-HHhhhc------chHHHHHHhcCCCcccHHHHHHHHhccccCcchhhhhc
Confidence 46788999999999999999888753355 588775 367999999999999999997655441 0 01 111
Q ss_pred h------------hccCCC----CCCchhhhhhhhhhhHHHHHHHhhccccccchhhhhhcCCCccee------------
Q psy6813 252 K------------MNLAPW----GSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYT------------ 303 (758)
Q Consensus 252 ~------------~~~~~w----~~~~s~~~~~~~y~il~~~~~~~~~~~~~~~~~~~i~~~~~kyy~------------ 303 (758)
. .+.++= ++.+..|++..+..||+.++...| +....|+||.
T Consensus 482 ~~~~~~~~~~~~~kg~~~Vd~~~~~~~~~hVyed~g~iY~~~Ln~td-----------~~~n~NkfY~iQLL~~~~~~~y 550 (981)
T PLN03123 482 ASGTSSSMVTVKVKGRSAVHEASGLQDTGHILEDGKSIYNTTLNMSD-----------LSTGVNSYYILQIIEEDKGSDC 550 (981)
T ss_pred ccccccccccccccCCccCCcccccccCceEEecCCeEeeeeEeccc-----------ccCCCcceEEEEEEEeCCCCeE
Confidence 0 011111 556678999999999999988776 3345666766
Q ss_pred ccccCCCCCCCC-CCchHHHHHHHHHHHHHHHhhhhccccccccc----------cccc--cccCCCCCCCCCHHHHHHH
Q psy6813 304 HIPHSFGLADPP-LLDNKQLVVQKMEMIDAMTQKLLDVKYEDTSK----------SKKV--KVEPMDIECSLEKPVAALV 370 (758)
Q Consensus 304 ~i~~~~g~~~~~-~~~~~~~v~~k~e~l~~~~~~~~e~~y~~~~~----------~~k~--~~~~~~~~s~L~~~Vq~Lv 370 (758)
|+.+.|||+|.. ++.+. .+.. .+++++..|....++.+++ +++. +-.+.+.++.-+.....
T Consensus 551 ~v~~rWGRVG~~~ig~~~---l~~~-~~~~A~~~F~kkF~eKTgn~W~~~~~r~~F~k~pgKy~~ie~dy~~~~~~~~-- 624 (981)
T PLN03123 551 YVFRKWGRVGNEKIGGNK---LEEM-SKSDAIHEFKRLFLEKTGNPWESWEQKTNFQKQPGKFYPLDIDYGVNEQPKK-- 624 (981)
T ss_pred EEEEEecccCCcccCccc---cCCC-CHHHHHHHHHHHHHHHhcCcccchhhcccccccCCceeEEEeecCcccchhh--
Confidence 678999999985 45543 2333 2445555554444444332 2221 11122222222221110
Q ss_pred HHHhcHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHhhhhhhhcccccCCCCCC
Q psy6813 371 ELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADP 450 (758)
Q Consensus 371 k~I~d~~~~~~~l~e~~~D~~kmPLGkLS~~qI~~a~~iL~ei~~~l~~~~~~~~~~~li~~lsn~fYtlIPh~fg~~~~ 450 (758)
. ...-...++| ..|..=.+++-+++-. + ..+ ++ -.+.....
T Consensus 625 ------~-------~~~~~~skL~------~~vq~L~klIfd~~~m-~--------~~m-~e----------~~~D~~km 665 (981)
T PLN03123 625 ------K-------AASGSKSNLA------PRLVELMKMLFDVETY-R--------AAM-ME----------FEINMSEM 665 (981)
T ss_pred ------h-------cccCCcCCCC------HHHHHHHHHHhCHHHH-H--------HHH-HH----------ccCCcccC
Confidence 0 0000001111 0111111111111000 0 000 00 00001111
Q ss_pred CCCC-cHHHHHHHHHHHHH------------------HHH-HHHHHhhhccCCCCCCCCchhHHhhcCcEEEEcCCCChH
Q psy6813 451 PLLD-NKQLVVQKMEMIDA------------------MTQ-IELAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPH 510 (758)
Q Consensus 451 ~lid-~~~~l~~k~~lLe~------------------L~d-Ie~A~~li~~~~~~~~~Pld~~Y~~L~~~L~~Ld~~S~E 510 (758)
|+=. +.+.|++-.+.|.. |.| .+.+|++|||. .+|+......|+.++++|+...+
T Consensus 666 PLGkLSk~qI~~g~~vL~ei~~~l~~~~~~~~~~~~~l~~lSn~fYtlIPh~----~pp~I~~~~~ik~k~~lLe~L~d- 740 (981)
T PLN03123 666 PLGKLSKANIQKGFEALTEIQNLLKENDQDPSIRESLLVDASNRFFTLIPSI----HPHIIRDEDDLKSKVKMLEALQD- 740 (981)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHhhccEecCCCC----CCCcCCCHHHHHHHHHHHHHHHH-
Confidence 1100 11111111111111 222 36688999984 57888999999999999998865
Q ss_pred HHHHHHHHHhcccCCC---cCc-ccccceeEEeecchhhhccccccccCCeEEeeccCC-------CcChHHHhhcCCcc
Q psy6813 511 YEIIHKYVQNTHAKTH---REY-SLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSR-------LTNFASIISKGLCI 579 (758)
Q Consensus 511 y~~I~ky~~nT~~~~h---~~~-~l~I~~IfrV~r~~E~~rF~~~k~l~N~~LLwHGSr-------~~N~~gIL~qGLri 579 (758)
.+...+++.......| ..| .|.. +|-.|++.+++ |+ .+.+...--||.. +.|++.|-++|-.-
T Consensus 741 ieiA~~ll~~~~~~~~pld~~Y~~L~~-~i~~L~~~s~e--y~---~I~~Yl~nT~~~th~~y~l~v~~IF~v~r~gE~~ 814 (981)
T PLN03123 741 IEIASRLVGFDVDEDDSLDDKYKKLHC-DISPLPHDSED--YK---LIEKYLLTTHAPTHTDWSLELEEVFSLEREGEFD 814 (981)
T ss_pred HHHHHHHHhccCcCCCchHHHHHhcCC-eEEECCCCCHH--HH---HHHHHHHhcCCCccccccceeeEEEEeccccccc
Confidence 5556666655432223 123 5554 57777765532 22 2222222234432 45555555554432
Q ss_pred CCCCCCccccccccceEeccccccccccccCCCCCccchhhHH-HHh-cccccceeecccccccccccCcccCccccCCC
Q psy6813 580 APPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLC-EVA-LGKVVLRYMFGKGIYFADSVSKSANYCMTNST 657 (758)
Q Consensus 580 appea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~glLlL~-eVA-lGa~~~g~mfGkGiYFAd~~SkSa~Yc~~~~~ 657 (758)
+ |- -|-.+....-+.||+++.+|-.|+|-.. ++| |++|.+|||||+||||||++||||+||++..+
T Consensus 815 r----------f~--~~~~~~~Nr~LLwHGSr~~N~~gILs~GLriaPpeap~tGymfGkGIYFAD~~SKSanYc~~~~~ 882 (981)
T PLN03123 815 K----------YA--PYKEKLKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCYTDRK 882 (981)
T ss_pred c----------hh--hHhhcCCCceEEEcCCCcccHHHHhhccCccCCccccccCccccceeEecchhhhhhhhhcccCC
Confidence 1 10 0111222344557777777666776653 565 69999999999999999999999999997543
No 12
>cd08002 WGR_PARP3_like WGR domain of poly(ADP-ribose) polymerase 3 and similar proteins. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of human PARP-3 and similar proteins, including Arabidopsis thaliana PARP-
Probab=99.94 E-value=1.7e-27 Score=216.34 Aligned_cols=81 Identities=28% Similarity=0.637 Sum_probs=75.5
Q ss_pred ceEEEEeCCcceeeeEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeeccccccCCCcccccCC-CHHHHHHHHHHHH
Q psy6813 86 TTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFK-DVESAFDEFDRCF 164 (758)
Q Consensus 86 ~~~Vy~~~~~~Y~~~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~~~G~~~~~~f~-~~~~A~~~F~k~F 164 (758)
.+|||. +| +|+|+|||+++|+|+||+||||+++ +.|+||++|||||+ .||+++.+|. ++++|+++|+++|
T Consensus 2 ~~~~~~----~y-~~~Ln~t~~~~n~NkfY~lQll~~~---~~y~v~~~WGRVG~-~Gq~~~~~~~~~l~~A~~~F~k~F 72 (100)
T cd08002 2 GAEVDE----DY-DCMLNQTNIGHNNNKFYVIQLLESG---KEYYVWNRWGRVGE-KGQNKLKGPWDSLEGAIKDFEKKF 72 (100)
T ss_pred CcEEeE----EE-EEEEEcccccCCCeeEEEEEEEecC---CEEEEEEEECccCC-cCcceeccCCCCHHHHHHHHHHHH
Confidence 468884 58 9999999999999999999999987 59999999999997 7999999885 5999999999999
Q ss_pred HhHhCCCCccc
Q psy6813 165 EKETGNTSGKD 175 (758)
Q Consensus 165 ~~KTgn~w~~r 175 (758)
++||||.|++|
T Consensus 73 ~~KTgn~W~~R 83 (100)
T cd08002 73 KDKTKNNWEDR 83 (100)
T ss_pred HHHhCCchhhc
Confidence 99999999999
No 13
>cd07997 WGR_PARP WGR domain of poly(ADP-ribose) polymerases. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins and histones. Higher eukaryotes contain several PARPs and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. Poly-ADP-ribosylation was thought to be a reversible post-translational covalent modification that serves as a regulator
Probab=99.93 E-value=2e-26 Score=210.39 Aligned_cols=84 Identities=36% Similarity=0.676 Sum_probs=77.7
Q ss_pred EEEeCCcceeeeEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeeccccccCCCcccccCCCHHHHHHHHHHHHHhHh
Q psy6813 89 LVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKET 168 (758)
Q Consensus 89 Vy~~~~~~Y~~~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~~~G~~~~~~f~~~~~A~~~F~k~F~~KT 168 (758)
|+.+...+| +|+|+++|++.|+|+||+|||+++++ .+.|+||++|||||+ .||+++++|+++++|+++|+++|++||
T Consensus 2 ~~~~~~~~y-~~~L~~~d~~~n~n~fy~lql~~~~~-~~~y~v~~~WGRVG~-~Gq~~~~~~~~~~~A~~~F~k~f~~Kt 78 (102)
T cd07997 2 VYGDIATVY-DATLNQTDISNNNNKFYKIQILESKG-PNTYALFTRWGRVGE-RGQSQLTPFGSLESAIKEFEKKFKDKT 78 (102)
T ss_pred cccccCcEE-EEEEEeeccCCCCcceEEEEEEEcCC-CCeEEEEEEEccCCC-cCceeecCCCCHHHHHHHHHHHHHHHH
Confidence 444433568 99999999999999999999999997 689999999999997 899999999999999999999999999
Q ss_pred CCCCccc
Q psy6813 169 GNTSGKD 175 (758)
Q Consensus 169 gn~w~~r 175 (758)
||+|++|
T Consensus 79 ~~~w~~r 85 (102)
T cd07997 79 GNEWENR 85 (102)
T ss_pred CCccccc
Confidence 9999998
No 14
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation
Probab=99.87 E-value=1.4e-22 Score=190.65 Aligned_cols=113 Identities=22% Similarity=0.386 Sum_probs=84.5
Q ss_pred EeeccCCCcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCCCCCccchhhHHHHhcccccceeecccc
Q psy6813 559 LLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKG 638 (758)
Q Consensus 559 LLwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~glLlL~eVAlGa~~~g~mfGkG 638 (758)
+|||||+..++..|+++||+++++. .+|.|||+|||||+.+++|++||.....
T Consensus 1 ~LfHGt~~~~~~~I~~~GF~~~~~g--~~~~~~G~GiYFA~~~s~S~~Y~~~~~~------------------------- 53 (121)
T cd01439 1 LLFHGTSADAVEAICRHGFDRRFCG--KHGTMYGKGSYFAKNASYSHQYSKKSPK------------------------- 53 (121)
T ss_pred CcccccChhhHHHHHHccCCCccCC--CCCCccCCeeecccChhhhhcccccCcC-------------------------
Confidence 5999999999999999999998654 3577888888888888888777765311
Q ss_pred cccccccCcccCccccCCCCCceeEEEEEeecCcceeecccccccCCC--------CCCCccccCCCccCCCCCCeeecC
Q psy6813 639 IYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLP--------NGFHSVQGQGRNCPDPKGSIVLDN 710 (758)
Q Consensus 639 iYFAd~~SkSa~Yc~~~~~~~~r~mLLceVALG~~~e~~~a~~~~~~p--------~G~~Sv~g~G~~~Pdp~~~~~~~d 710 (758)
.++.+.||||+|++|+... ..+. +..|| .+||||++-
T Consensus 54 ------------------~~g~~~mfL~rVl~G~~~~-~~~~-~~~pP~~~~~~~~~~yDS~vd~--------------- 98 (121)
T cd01439 54 ------------------ADGLKEMFLARVLTGDYTQ-GHPG-YRRPPLKPSGVELDRYDSCVDN--------------- 98 (121)
T ss_pred ------------------CCCcEEEEEEEEEecceec-CCCc-ccCCCCccCCCCCCCccceeCC---------------
Confidence 1346789999999999643 2222 33444 556666532
Q ss_pred CeEeeCCccccCCCCcCCCCCCCCcEEEEecCCceeeeeEEEE
Q psy6813 711 NITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKV 753 (758)
Q Consensus 711 gv~vP~G~~i~~p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~ 753 (758)
....++||||+.+|++|+|||++
T Consensus 99 --------------------~~~p~~~Vvf~~~q~yPeYlI~y 121 (121)
T cd01439 99 --------------------VSNPSIFVIFSDVQAYPEYLITY 121 (121)
T ss_pred --------------------CCCCCEEEEEeCCccceeEEEEC
Confidence 12357999999999999999985
No 15
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates. Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region o
Probab=99.86 E-value=2.6e-22 Score=192.74 Aligned_cols=132 Identities=31% Similarity=0.395 Sum_probs=104.6
Q ss_pred EeeccCCCcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCCCCCc---cchhhHHHHhcccccceeec
Q psy6813 559 LLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNN---VGLLLLCEVALGKVVLRYMF 635 (758)
Q Consensus 559 LLwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~---~glLlL~eVAlGa~~~g~mf 635 (758)
+|||||+..||.+|+++||+++++.++.+|+|||+|||||+++++|++||....... .+.+.+|...
T Consensus 1 ~l~HGs~~~n~~~I~~~Gl~~~~~~~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~~~~~~~~~~~~~~~~~---------- 70 (137)
T cd01341 1 FLFHGSPPGNVISILKLGLRPASYGVLLNGGMFGKGIYSAPNISKSNGYSVGCDGQHVFQNGKPKVCGRE---------- 70 (137)
T ss_pred CccccCCccchHHHhhCCCCCCCccccccccccCceeeecCChHHhhhhhcccCCccccccccccccccc----------
Confidence 489999999999999999999998888899999999999999999999998764321 1111111111
Q ss_pred ccccccccccCcccCccccCCCCCceeEEEEEeecCcceeecccc-cccCCCCCCCccccCCCccCCCCCCeeecCCeEe
Q psy6813 636 GKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAE-FVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITV 714 (758)
Q Consensus 636 GkGiYFAd~~SkSa~Yc~~~~~~~~r~mLLceVALG~~~e~~~a~-~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~v 714 (758)
....++|++|+|++|++.+..... ...++|+|++|+.|++.+.+
T Consensus 71 ---------------------~~~~~fl~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------- 115 (137)
T cd01341 71 ---------------------LCVFGFLTLGVMSGATEESSRVLFPRNFRGATGAEVVDLLVAMCR-------------- 115 (137)
T ss_pred ---------------------ccceeEEEEEEeccccccccccccccccCCCCCCeEEEccccccc--------------
Confidence 234577999999999988765553 46677999999999976541
Q ss_pred eCCccccCCCCcCCCCCCCCcEEEEecC-Cceeeee
Q psy6813 715 PLGTLIDLPRDQAKNLSLLYNEFIVYDP-AQVKIRY 749 (758)
Q Consensus 715 P~G~~i~~p~~~~~~~~l~ynEyIVYd~-~Qi~~rY 749 (758)
+..++++|||||+. +|++|||
T Consensus 116 --------------~~~~~~~e~VV~~~~~Qv~~~Y 137 (137)
T cd01341 116 --------------DALLLPREYIIFEPYSQVSIRY 137 (137)
T ss_pred --------------chhhCCCeEEEecchhhceecC
Confidence 23578999999999 9999998
No 16
>smart00773 WGR Proposed nucleic acid binding domain. This domain is named after its most conserved central motif. It is found in a variety of polyA polymerases as well as in molybdate metabolism regulators (e.g. in E.coli) and other proteins of unknown function. The domain is found in isolation in some proteins and is between 70 and 80 residues in length. It is proposed that it may be a nucleic acid binding domain.
Probab=99.84 E-value=4.1e-21 Score=169.40 Aligned_cols=79 Identities=35% Similarity=0.708 Sum_probs=74.6
Q ss_pred CCcceeeeEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeeccccccCCCcccccCCCHHHHHHHHHHHHHhHhCCCC
Q psy6813 93 FDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGNTS 172 (758)
Q Consensus 93 ~~~~Y~~~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~~~G~~~~~~f~~~~~A~~~F~k~F~~KTgn~w 172 (758)
++.+| +++|+++|+.+|+|+||.|||+++++ +.|+||++|||||+ .|++++.+|.++++|+++|+++|++||+++|
T Consensus 2 ~~~~~-~~~L~~~d~~~n~nkfy~iql~~~~~--~~~~v~~~wGRiG~-~g~~~~~~~~s~~~A~~~f~k~~~~Kt~~gy 77 (84)
T smart00773 2 GGEIY-DVYLNQTDLASNNNKFYRIQLLEDDF--GGYSVWRRWGRIGT-NGQTKLETFDSLEDAIKEFEKLFKEKTKNGY 77 (84)
T ss_pred CCcee-EEEEEccccccCCeeEEEEEEEEcCC--CCEEEEEEeeecCC-CCceeeEcCCCHHHHHHHHHHHHHHHhcCCC
Confidence 35678 99999999999999999999999998 46999999999997 6999999999999999999999999999999
Q ss_pred ccc
Q psy6813 173 GKD 175 (758)
Q Consensus 173 ~~r 175 (758)
.+|
T Consensus 78 ~~r 80 (84)
T smart00773 78 EER 80 (84)
T ss_pred ccc
Confidence 998
No 17
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=99.83 E-value=8.4e-24 Score=249.42 Aligned_cols=403 Identities=17% Similarity=0.210 Sum_probs=212.3
Q ss_pred hhHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccchhhhh-hhchhHHHHHHhhcc
Q psy6813 177 KQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFIKD-AANGKVLELIEKMNL 255 (758)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~ 255 (758)
.+.++..|+.+||++++.|+.. +.+|+|.+++++. |+.++++|++.||+||+++|..+ +..+++..++...-+
T Consensus 205 r~elK~~Ie~~GGkvsssVs~~-T~lIvt~~ev~k~-----gsSKlkkAk~lgIpIVsEd~L~d~i~~~k~~~~~~y~l~ 278 (815)
T PLN03122 205 HQYWKKDIEKHGGKVANSVEGV-TCLVVSPAERERG-----GSSKIAEAMERGIPVVREAWLIDSIEKQEAQPLEAYDVV 278 (815)
T ss_pred HHHHHHHHHHcCCEEccccccc-eEEEEcCcccccc-----CccHHHHHHHcCCcCccHHHHHHHHhcCCcccchhhhhc
Confidence 3689999999999999999554 4557887776542 44679999999999999875544 444456666665666
Q ss_pred CCCCCC---------------------------------------chhhhhhhhhhhHHHHHHHhhccccccchhhhhhc
Q psy6813 256 APWGSD---------------------------------------DSAKHLAQGYSILNEVISVLDRNAEADVKDRLILT 296 (758)
Q Consensus 256 ~~w~~~---------------------------------------~s~~~~~~~y~il~~~~~~~~~~~~~~~~~~~i~~ 296 (758)
++|+.+ ++.|++..+..|++.++.+.| +..
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~V~~~~~l~~~~~~V~~~~~~iYd~~Lnqtd-----------~~~ 347 (815)
T PLN03122 279 SDLSVEGRGIPWDKQDPSEEAIESLSAELKLYGKRGVYKDSKLQEEGGKIFEKDGILYNCAFSICD-----------LGR 347 (815)
T ss_pred cccccccccCcccccCCcccccccccchhccccCcCCCcccccccCccEEEecCCeEeeeeeeeee-----------ccC
Confidence 666332 345566666666666666655 334
Q ss_pred CCCccee-----------ccccCCCCCCCCCCchHHHHHHHHHHHHHHHhhhhccccccccc----------cccc--cc
Q psy6813 297 LTNSFYT-----------HIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKYEDTSK----------SKKV--KV 353 (758)
Q Consensus 297 ~~~kyy~-----------~i~~~~g~~~~~~~~~~~~v~~k~e~l~~~~~~~~e~~y~~~~~----------~~k~--~~ 353 (758)
..||||. |+.+.|||+|...-...+ ......+++++..|....++.+++ +++. +.
T Consensus 348 n~NkfY~iQlL~~~~~~y~~~~rWGRVG~~gq~~~~--~~~~~~~~~Ai~~F~kkF~eKTgn~~~~w~~r~~F~k~pgky 425 (815)
T PLN03122 348 GLNEYCIMQLITVPDSNLHLYYKKGRVGDDPNAEER--LEEWEDVDAAIKEFVRLFEEITGNEFEPWEREKKFEKKRLKF 425 (815)
T ss_pred CCcceEEEEEEEcCCCcEEEEeeecccCCcCCCccc--cCCCCCHHHHHHHHHHHHHHHhCCCccccccccCccccCCCC
Confidence 5566665 678999999986523110 122334556666554444444332 1121 11
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHh
Q psy6813 354 EPMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTL 433 (758)
Q Consensus 354 ~~~~~~s~L~~~Vq~Lvk~I~d~~~~~~~l~e~~~D~~kmPLGkLS~~qI~~a~~iL~ei~~~l~~~~~~~~~~~li~~l 433 (758)
.+.+.+..-+..-..+ ...+.+.. .|=.+|. .. +.+|..+|-.... -+..+ ++
T Consensus 426 ~~id~d~~~~~~~~~~------------~~~~~~~~---~~~skL~-----~~---Vq~L~~lIfd~~~--m~~~m-~e- 478 (815)
T PLN03122 426 YPIDMDDGVDVRAGGL------------GLRQLGVA---AAHCKLD-----PK---VANFMKVLCSQEI--YRYAM-ME- 478 (815)
T ss_pred ceeecccccccccccc------------chhhcccc---cCCCCCC-----HH---HHHHHHHHcCHHH--HHHHH-HH-
Confidence 1111111111100000 00000000 0001111 11 1111111100000 00000 00
Q ss_pred hhhhhhcccccCCCCCCCCCC-cHHHHHHHHHHHHH------------------HHHH-HHHHhhhccCCCCCCCCchhH
Q psy6813 434 TNSFYTHIPHSFGLADPPLLD-NKQLVVQKMEMIDA------------------MTQI-ELAYTIKQEGPSAGVHPLVNC 493 (758)
Q Consensus 434 sn~fYtlIPh~fg~~~~~lid-~~~~l~~k~~lLe~------------------L~dI-e~A~~li~~~~~~~~~Pld~~ 493 (758)
-.+-....|+=. +...|++-.+.|.. +.|+ +.+|++||+ ..+|+...
T Consensus 479 ---------~~~D~~kmPLGKLSk~qI~~g~~vL~ei~~~l~~~~~~~~~~~~~~~dlSnrfYTlIPh----~~ppvi~~ 545 (815)
T PLN03122 479 ---------MGLDSPDLPMGMLSDFHLKRCEEVLLEFAEFVKSEKETGQKAEAMWLDFSNKWFSLVHS----TRPFVIRD 545 (815)
T ss_pred ---------cCCCcccCCCCcCCHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHhccceeccCC----CCCCCCCC
Confidence 011111222100 12222222222221 2222 557888887 46788888
Q ss_pred HhhcCcE-EEEcCCCChHHHHHHHHHHhcccC--CC---cCc-ccccceeEEeecchhhhccccccccCCeEEeeccC--
Q psy6813 494 YEKLQAN-IKSVDTSHPHYEIIHKYVQNTHAK--TH---REY-SLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGS-- 564 (758)
Q Consensus 494 Y~~L~~~-L~~Ld~~S~Ey~~I~ky~~nT~~~--~h---~~~-~l~I~~IfrV~r~~E~~rF~~~k~l~N~~LLwHGS-- 564 (758)
...|+.+ +++|+...+ .+...+++...... .| ..| .|.. +|-.|++.+++ |+ .+.++..--||.
T Consensus 546 ~~~lk~k~~~mLe~L~D-IeiA~~ll~~~~~~~~~~pLd~~Y~~L~~-~i~pLd~~S~e--yk---~I~~Yl~nT~~~th 618 (815)
T PLN03122 546 IDELADHAASALETVRD-INVASRLIGDMTGSTLDDPLSDRYKKLGC-SISPVDKESDD--YK---MIVKYLEKTYEPVK 618 (815)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhhccccccCCchHHHHHhcCc-eEEEcCCCCHH--HH---HHHHHHHhcCCCcc
Confidence 8889888 588887753 55555555543211 22 223 5664 67778766532 22 222222223332
Q ss_pred --------CCcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCCCCCccchhhHH-HHh-cccccceee
Q psy6813 565 --------RLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLC-EVA-LGKVVLRYM 634 (758)
Q Consensus 565 --------r~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~glLlL~-eVA-lGa~~~g~m 634 (758)
.+.|++.|-++|. + .|- -|.+...+-+.||+++.+|-.|+|.++ +|| |+||++|||
T Consensus 619 ~~~~~y~l~v~~IF~veR~ge---~--------rf~---~~~~l~NR~LLWHGSR~tN~~gILsqGLRIAPPEAPvtGYM 684 (815)
T PLN03122 619 VGDVSYSVSVENIFAVESSAG---P--------SLD---EIKKLPNKVLLWCGTRSSNLLRHLAKGFLPAVCSLPVPGYM 684 (815)
T ss_pred ccCcccceeEeEEEEeccCcc---c--------cch---hhcCCCCceEEeccchhhhHHHHhhCCCccCCcccCCCCCc
Confidence 2455666656552 1 111 122334455667777766666766653 666 799999999
Q ss_pred cccccccccccCcccCccccCCCCC
Q psy6813 635 FGKGIYFADSVSKSANYCMTNSTNN 659 (758)
Q Consensus 635 fGkGiYFAd~~SkSa~Yc~~~~~~~ 659 (758)
||||||||||+||||+||+++.+++
T Consensus 685 FGKGIYFAD~~SKSAnYC~t~~~~~ 709 (815)
T PLN03122 685 FGKAIVCSDAAAEAARYGFTAVDRP 709 (815)
T ss_pred cCCeeEecchhhhhhhhhccccCCC
Confidence 9999999999999999999876554
No 18
>cd07994 WGR WGR domain. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs) as well as the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, a small family of bacterial DNA ligases, and various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain occurs in single-domain proteins and in a variety of domain architectures, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain.
Probab=99.80 E-value=1.6e-19 Score=155.41 Aligned_cols=72 Identities=38% Similarity=0.733 Sum_probs=67.3
Q ss_pred eEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeeccccccCCCcccccCCCHHHHHHHHHHHHHhHhCCCCcc
Q psy6813 100 AVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGNTSGK 174 (758)
Q Consensus 100 ~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~~~G~~~~~~f~~~~~A~~~F~k~F~~KTgn~w~~ 174 (758)
++|+.+|. |+||||+|||++++. .+.|+||++|||||+..||+++.+|.++++|+++|+++|.+||+|+|.+
T Consensus 2 ~~l~~~d~--~~nKFy~iql~~~~~-~~~~~v~~~WGRiGt~~Gq~~~~~~~s~~~A~~~f~kl~~~Kt~kGY~~ 73 (73)
T cd07994 2 ATLGFQDI--GSNKYYKLQLLEDDK-ENRYWVFRSYGRVGTVIGSTKLEQMPSKEEAEEHFMKLYEEKTGKGYYP 73 (73)
T ss_pred eEEEEEEC--CCceEEEEEEEeccC-CCcEEEEEEECCccCcCCceeeEcCCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 67999998 999999999999987 6899999999999964799999999999999999999999999999864
No 19
>PF05406 WGR: WGR domain; InterPro: IPR008893 This domain is named after the most conserved central motif of the domain. It is found in a variety of polyA polymerases as well as the Escherichia coli molybdate metabolism regulator P33345 from SWISSPROT and other proteins of unknown function.The domain is found in isolation in proteins such as Q9JN21 from SWISSPROT and is between 70 and 80 residues in length. ; PDB: 2EOC_A 2RA8_A 4DQY_C 2CR9_A.
Probab=99.79 E-value=1.5e-19 Score=158.50 Aligned_cols=76 Identities=34% Similarity=0.695 Sum_probs=72.4
Q ss_pred CcceeeeEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeeccccccCCCcccccCCCHHHHHHHHHHHHHhHhCCCCc
Q psy6813 94 DDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGNTSG 173 (758)
Q Consensus 94 ~~~Y~~~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~~~G~~~~~~f~~~~~A~~~F~k~F~~KTgn~w~ 173 (758)
+.+| +|+|+++|+..|+|+||.|||++++ .|.|+++|||||+ .|+.++.+|++.++|+++|+++|++||+++|.
T Consensus 2 ~~~y-~~~L~~~d~~~n~~kfY~iql~~~~----~~~v~~~wGRiG~-~gq~~~~~f~s~~eA~~~f~~~~~~K~~~gy~ 75 (81)
T PF05406_consen 2 GIIY-NVYLERTDPEKNSNKFYRIQLLPDL----EWVVFRRWGRIGS-KGQTRIKPFDSEEEAIKEFEKLFKEKTGKGYE 75 (81)
T ss_dssp TEEC-EEEEEEEETTTTEEEEEEEEEEEET----TEEEEEEEEETTS-SEEEEEEEESSHHHHHHHHHHHHHHHHSSTSC
T ss_pred CcEE-EEEEEEEecCCCcEEEEEEEEEeCC----CeEEEEEECCCCC-cCcEEEEeCCCHHHHHHHHHHHHHHHHcCCCc
Confidence 4688 9999999999999999999999886 3999999999997 69999999999999999999999999999999
Q ss_pred cc
Q psy6813 174 KD 175 (758)
Q Consensus 174 ~r 175 (758)
+|
T Consensus 76 ~~ 77 (81)
T PF05406_consen 76 ER 77 (81)
T ss_dssp CC
T ss_pred cc
Confidence 98
No 20
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.
Probab=99.64 E-value=4.7e-16 Score=133.83 Aligned_cols=72 Identities=21% Similarity=0.449 Sum_probs=68.1
Q ss_pred eEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeeccccccCCCcccccCCCHHHHHHHHHHHHHhHhCCCCcc
Q psy6813 100 AVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGNTSGK 174 (758)
Q Consensus 100 ~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~~~G~~~~~~f~~~~~A~~~F~k~F~~KTgn~w~~ 174 (758)
+.|.++|+..|+|+||.|||.++++ +.|+|+++|||||+ .||.++..|.|.++|+++|+++|++||+++|.+
T Consensus 2 ~~l~~~d~~~n~~kfy~i~l~~~lf--g~~~v~~~wGRiG~-~Gq~~~~~~~s~~~A~~~~~k~~~~K~~~GY~~ 73 (74)
T cd07996 2 TRLERIDPERNSARFYEIELEGDLF--GEWSLVRRWGRIGT-KGQSRTKTFDSEEEALKAAEKLIREKLKRGYRE 73 (74)
T ss_pred eEEEEECcccCCCcEEEEEEcccCC--CCEEEEEEECCCCC-CCceEEEECCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 4599999999999999999999988 68999999999995 899999999999999999999999999999965
No 21
>PLN03124 poly [ADP-ribose] polymerase; Provisional
Probab=99.39 E-value=5.7e-15 Score=170.98 Aligned_cols=162 Identities=25% Similarity=0.356 Sum_probs=98.3
Q ss_pred HHHHhhhccCCCCC--CCCchhHHhhcCcEEEEcCCCChHHHHHHHHHHhccc-CCC---cCc-ccccceeEEeecchhh
Q psy6813 473 ELAYTIKQEGPSAG--VHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHA-KTH---REY-SLNIEAIFEVSRHGED 545 (758)
Q Consensus 473 e~A~~li~~~~~~~--~~Pld~~Y~~L~~~L~~Ld~~S~Ey~~I~ky~~nT~~-~~h---~~~-~l~I~~IfrV~r~~E~ 545 (758)
+.+|++|||.++.. .+|+......|+.++++|+... +.+...+++..... ..| ..| .|.. +|-.|++.+++
T Consensus 362 n~FYTlIPH~FG~~~~~~~vIdt~~~lk~k~elLe~L~-DIevA~~ll~~~~~~~~~pld~~Y~~L~c-~i~pLd~~S~e 439 (643)
T PLN03124 362 GEFYTVIPHDFGFKKMRQFTIDTPQKLKHKLEMVEALG-EIEIATKLLKDDIGEQDDPLYAHYKRLNC-ELEPLDTDSEE 439 (643)
T ss_pred cCeEEecCcccccCCCCccccCCHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCcHHHHHHHcCC-eeEEcCCCCHH
Confidence 66889999987655 3468889999999999999884 45555556654422 112 123 4553 57777655532
Q ss_pred hccccccccCCeEEeeccCC-------CcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCCCCCccch
Q psy6813 546 KRFKPFEKLGNKHLLWHGSR-------LTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGL 618 (758)
Q Consensus 546 ~rF~~~k~l~N~~LLwHGSr-------~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~gl 618 (758)
|+ .+.+...--||.. +.|++.|-+.|-.- .|-. |.+....-..||+++.+|-.|+
T Consensus 440 --fk---~I~~Yl~nT~~~th~~y~l~V~~If~V~R~~E~~----------rF~~---~~~~~Nr~LLWHGSr~~N~~gI 501 (643)
T PLN03124 440 --FS---MIAKYLENTHGQTHSGYTLEIVQIFKVSREGEDE----------RFQK---FSSTKNRMLLWHGSRLTNWTGI 501 (643)
T ss_pred --HH---HHHHHHHhcCCCccCcCceeEEEEEEeccccchh----------hHHH---hhccCCeEEEEcCCCcccHHHH
Confidence 22 2222222234432 23344433333221 2211 1222223344666665555566
Q ss_pred hhHH-HHh-cccccceeecccccccccccCcccCcccc
Q psy6813 619 LLLC-EVA-LGKVVLRYMFGKGIYFADSVSKSANYCMT 654 (758)
Q Consensus 619 LlL~-eVA-lGa~~~g~mfGkGiYFAd~~SkSa~Yc~~ 654 (758)
|-.. ++| |++|.+|||||+||||||++|||++||++
T Consensus 502 Ls~GLriaPpea~~~GymfGkGIYFAd~~skSa~Yc~~ 539 (643)
T PLN03124 502 LSQGLRIAPPEAPSTGYMFGKGVYFADMFSKSANYCYA 539 (643)
T ss_pred HhccCccCCcccccccccccceeEecchhhhhhhhhhc
Confidence 5543 555 79999999999999999999999999986
No 22
>COG3831 Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=1.3e-09 Score=95.30 Aligned_cols=69 Identities=22% Similarity=0.379 Sum_probs=63.8
Q ss_pred eeEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeeccccccCCCcccccCCCHHHHHHHHHHHHHhHhCCCCccc
Q psy6813 99 NAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGNTSGKD 175 (758)
Q Consensus 99 ~~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~~~G~~~~~~f~~~~~A~~~F~k~F~~KTgn~w~~r 175 (758)
.+.|.++|...|+++||-|-+... .|.++|||||+ .||+++..|++.++|.++|.++-.+|.+.+|.+.
T Consensus 2 ~~~l~~~D~~~n~~kFy~~~i~g~-------~L~~~wGRiG~-~Gq~~~k~F~~~~~a~~~~~kLi~~KrkkGY~d~ 70 (85)
T COG3831 2 RLYLERIDEKRNMAKFYAVEIEGA-------ELTRNWGRIGT-KGQSQIKSFDDSADAEKAALKLIREKRKKGYVEA 70 (85)
T ss_pred eeEEEEecccccccceEEEEEecc-------eeEEeeccccc-CcceeeeeCCCHHHHHHHHHHHHHHHHhcccccc
Confidence 456999999999999999998822 59999999997 7999999999999999999999999999999997
No 23
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.
Probab=98.79 E-value=5e-10 Score=123.03 Aligned_cols=162 Identities=27% Similarity=0.352 Sum_probs=99.1
Q ss_pred HHHHhhhccCCCCCCCCchhHHhhcCcEEEEcCCCChHHHHHHHHHHhccc-CCC---cCc-ccccceeEEeecchhhhc
Q psy6813 473 ELAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHA-KTH---REY-SLNIEAIFEVSRHGEDKR 547 (758)
Q Consensus 473 e~A~~li~~~~~~~~~Pld~~Y~~L~~~L~~Ld~~S~Ey~~I~ky~~nT~~-~~h---~~~-~l~I~~IfrV~r~~E~~r 547 (758)
+.+|++|+|.++...+|+....+.|+.++++|+... |.+...+.+..... ..| ..| .+. .+|-.+++.++ .
T Consensus 74 ~~FYtlIPh~fg~~~p~~i~~~~~l~~k~~lle~L~-die~a~~l~~~~~~~~~~pld~~Y~~L~-~~i~~L~~~s~--e 149 (347)
T cd01437 74 NEFYTLIPHDFGMSKPPVIDNEELLKAKRELLEALR-DIEIASKLLKDDEDDSDDPLDANYEKLK-CKIEPLDKDSE--E 149 (347)
T ss_pred HHHHHhCCccccCCCCCccCCHHHHHHHHHHHHHHH-HHHHHHHHHhhcccCCCCcchhHHHHcC-eeEEECCCCCh--H
Confidence 678999999988888999999999999999888774 35555556655421 112 223 344 45777765552 1
Q ss_pred cccccccCCeEEeec----cC--CCcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCCCCCccchhhH
Q psy6813 548 FKPFEKLGNKHLLWH----GS--RLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLL 621 (758)
Q Consensus 548 F~~~k~l~N~~LLwH----GS--r~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~glLlL 621 (758)
|+ .+.+...--| +. ++.+++.|-+.|..- .|-. +.+....-..||+++..+-.++|-.
T Consensus 150 y~---~I~~y~~~t~~~~~~~~~~V~~If~i~r~~e~~----------~F~~---~~~~~n~~lLwHGsr~~n~~~Il~~ 213 (347)
T cd01437 150 YK---IIEKYLKNTHAPTTEYTVEVQEIFRVEREGETD----------RFKP---FKKLGNRKLLWHGSRLTNFVGILSQ 213 (347)
T ss_pred HH---HHHHHHHhcCCCCCCcceeEEEEEEecCCCchh----------hhHH---hhccCCeEEEEcCCChhhHHHHHhc
Confidence 22 2211111112 21 233445544444322 1221 1233344445777666554455443
Q ss_pred H-HHh-cccccceeecccccccccccCcccCcccc
Q psy6813 622 C-EVA-LGKVVLRYMFGKGIYFADSVSKSANYCMT 654 (758)
Q Consensus 622 ~-eVA-lGa~~~g~mfGkGiYFAd~~SkSa~Yc~~ 654 (758)
. +++ ++++.+|||||+||||||++|||++||++
T Consensus 214 Gl~~~~~~~~~~g~mfGkGIYFAd~~skS~~Y~~~ 248 (347)
T cd01437 214 GLRIAPPEAPVTGYMFGKGIYFADMFSKSANYCHA 248 (347)
T ss_pred CCCcCccccccCCccccceEeecCchHhhhhhccc
Confidence 2 555 58999999999999999999999999973
No 24
>PF00645 zf-PARP: Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region; InterPro: IPR001510 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents PARP (Poly(ADP) polymerase) type zinc finger domains. NAD(+) ADP-ribosyltransferase(2.4.2.30 from EC) [, ] is a eukaryotic enzyme that catalyses the covalent attachment of ADP-ribose units from NAD(+) to various nuclear acceptor proteins. This post-translational modification of nuclear proteins is dependent on DNA. It appears to be involved in the regulation of various important cellular processes such as differentiation, proliferation and tumour transformation as well as in the regulation of the molecular events involved in the recovery of the cell from DNA damage. Structurally, NAD(+) ADP-ribosyltransferase consists of three distinct domains: an N-terminal zinc-dependent DNA-binding domain, a central automodification domain and a C-terminal NAD-binding domain. The DNA-binding region contains a pair of PARP-type zinc finger domains which have been shown to bind DNA in a zinc-dependent manner. The PARP-type zinc finger domains seem to bind specifically to single-stranded DNA and to act as a DNA nick sensor. DNA ligase III [] contains, in its N-terminal section, a single copy of a zinc finger highly similar to those of PARP. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding; PDB: 1UW0_A 3OD8_D 3ODA_A 4AV1_A 2DMJ_A 4DQY_D 2L30_A 2CS2_A 2L31_A 3ODE_B ....
Probab=98.65 E-value=1.1e-08 Score=89.84 Aligned_cols=35 Identities=51% Similarity=0.875 Sum_probs=30.7
Q ss_pred eecccccccccccccccccCceeeeeeecccccch
Q psy6813 11 DYAKSNRAKCKGCKDTIIQGTLRLAVMVQINARIG 45 (758)
Q Consensus 11 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (758)
||||||||+|++|+.+|.+|+|||+.+++++.++|
T Consensus 1 EyAks~Ra~Ck~C~~~I~kg~lRiG~~~~~~~~~~ 35 (82)
T PF00645_consen 1 EYAKSGRAKCKGCKKKIAKGELRIGKIVPSPEGDG 35 (82)
T ss_dssp EE-SSSTEBETTTSCBE-TTSEEEEEEEEETTSSC
T ss_pred CcCCCCCccCcccCCcCCCCCEEEEEEecccccCC
Confidence 89999999999999999999999999999977643
No 25
>PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The regulatory domain of the polymerase is almost always associated with the C-terminal catalytic domain (see IPR001290 from INTERPRO). This domain consists of a duplication of two helix-loop-helix structural repeats [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity, 0006471 protein ADP-ribosylation; PDB: 1GS0_B 3FHB_A 3C49_A 3CE0_A 3C4H_A 3KCZ_B 3KJD_B 3L3M_A 3GJW_A 1UK1_A ....
Probab=98.54 E-value=3.9e-08 Score=94.35 Aligned_cols=76 Identities=32% Similarity=0.666 Sum_probs=62.4
Q ss_pred hhhhhhhhhhhHHHHHHHhhccccccchhhhhhcCCCcceeccccCCCCCCCCCCchHHHHHHHHHHHHHHHhhhhcccc
Q psy6813 263 SAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKY 342 (758)
Q Consensus 263 s~~~~~~~y~il~~~~~~~~~~~~~~~~~~~i~~~~~kyy~~i~~~~g~~~~~~~~~~~~v~~k~e~l~~~~~~~~e~~y 342 (758)
|+.||++||+||+++..+|. .......+.+.+|+||..|||.||+..||+++|.+.|.+++++|+.+.+ +++.+
T Consensus 41 S~~qI~~g~~iL~~i~~~l~----~~~~~~~i~~lsn~fYtlIPh~fg~~~~~~I~~~~~l~~k~~lle~L~d--ie~A~ 114 (133)
T PF02877_consen 41 SKEQIEKGYEILKEIEELLK----EQERRSKIEDLSNRFYTLIPHNFGRSRPPVIDTEEKLKEKLELLEALLD--IEIAS 114 (133)
T ss_dssp -HHHHHHHHHHHHHHHHHHH----TTSSSHHHHHHHHHHHHHSTB-STTS-S--STSHHHHHHHHHHHHHHHH--HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH----ccccHHHHHHHHHHHHHHCCCcccCCCCCCcCCHHHHHHHHHHHHHHHH--HHHHH
Confidence 67999999999999999998 2334456778999999999999999999999999999999999999988 77766
Q ss_pred cc
Q psy6813 343 ED 344 (758)
Q Consensus 343 ~~ 344 (758)
.-
T Consensus 115 ~l 116 (133)
T PF02877_consen 115 KL 116 (133)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 26
>cd07998 WGR_DNA_ligase WGR domain of bacterial DNA ligases. The WGR domain is found in a small family of predicted bacterial DNA ligases. It has been called WGR after the most conserved central motif of the domain. The domain typically occurs in together with an ATP-dependent DNA ligase domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain.
Probab=98.27 E-value=4.6e-06 Score=72.52 Aligned_cols=64 Identities=16% Similarity=0.270 Sum_probs=56.0
Q ss_pred CCCceeEEEEEEeecCCCCeEEEEEeeccccccCCCcccc--cCCCHHHHHHHHHHHHHhHhCCCCccc
Q psy6813 109 AGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQ--DFKDVESAFDEFDRCFEKETGNTSGKD 175 (758)
Q Consensus 109 ~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~~~G~~~~~--~f~~~~~A~~~F~k~F~~KTgn~w~~r 175 (758)
.+.+|||.+-|-+.. .+.|.|-.+|||||+ .||+... .|.+.+.|.++|.|+-.+|++.+|...
T Consensus 10 g~S~Kfyev~~~~~~--d~g~~v~~~yGR~Gt-~gq~~tkt~~~~~~~~A~k~~~Klv~eK~~KGY~~~ 75 (77)
T cd07998 10 GNSDKVYEVDLFEVS--DDGYVVNFRYGRRGS-ALREGTKTVAPVTLEAAEKIFDKLVKSKTNKGYREG 75 (77)
T ss_pred CCCceEEEEEEEecc--CCceEEEEEEccccC-CcccccccCCCCCHHHHHHHHHHHHHHHhcCCceec
Confidence 477999999999874 368999999999997 7998766 446899999999999999999999874
No 27
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT). Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).
Probab=97.19 E-value=0.00011 Score=76.14 Aligned_cols=26 Identities=46% Similarity=0.722 Sum_probs=23.6
Q ss_pred cceeecccccccccccCcccCccccC
Q psy6813 630 VLRYMFGKGIYFADSVSKSANYCMTN 655 (758)
Q Consensus 630 ~~g~mfGkGiYFAd~~SkSa~Yc~~~ 655 (758)
.+|+|||+|||||+++|||++||++.
T Consensus 113 ~~g~~fGkGiYFA~~askS~~Y~~~~ 138 (223)
T cd01438 113 YIGGMFGAGIYFAENSSKSNQYVYGI 138 (223)
T ss_pred ccCceeeeeeeeccchhhhccccccc
Confidence 35899999999999999999999864
No 28
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates. Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region o
Probab=97.18 E-value=0.00013 Score=70.48 Aligned_cols=51 Identities=31% Similarity=0.403 Sum_probs=35.4
Q ss_pred cccccceeecccccccccccCcccCccccCCCC---CceeEEEEEeecCc-ceee
Q psy6813 626 LGKVVLRYMFGKGIYFADSVSKSANYCMTNSTN---NVGLLLLCEVALGK-VVKK 676 (758)
Q Consensus 626 lGa~~~g~mfGkGiYFAd~~SkSa~Yc~~~~~~---~~r~mLLceVALG~-~~e~ 676 (758)
.+++..|+|||+|||||+++|+|+.||...... ..+...||.+.+.+ ++..
T Consensus 24 ~~~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~fl~ 78 (137)
T cd01341 24 YGVLLNGGMFGKGIYSAPNISKSNGYSVGCDGQHVFQNGKPKVCGRELCVFGFLT 78 (137)
T ss_pred ccccccccccCceeeecCChHHhhhhhcccCCcccccccccccccccccceeEEE
Confidence 366667899999999999999999999985421 12235555555443 4443
No 29
>KOG1037|consensus
Probab=96.79 E-value=0.00039 Score=80.93 Aligned_cols=55 Identities=42% Similarity=0.599 Sum_probs=39.4
Q ss_pred cccccccccCCCCCccchhhH--HHHhcccccceeecccccccccccCcccCccccC
Q psy6813 601 VSKSANYCMTNSTNNVGLLLL--CEVALGKVVLRYMFGKGIYFADSVSKSANYCMTN 655 (758)
Q Consensus 601 ~sKSa~Yc~~~~~~~~glLlL--~eVAlGa~~~g~mfGkGiYFAd~~SkSa~Yc~~~ 655 (758)
..+-+.++.....+-.+++.- ..+..++|.+|||||+||||||++|+|++||++.
T Consensus 365 ~~r~llw~gs~~~n~a~~l~~g~~~~~~~~~~~g~~~gkgiyfa~~~sks~~y~~~~ 421 (531)
T KOG1037|consen 365 INRQLLWHGSRFGNLAGILSPGLRLAPSEAPVTGYMFGKGIYFADAASKSANYCVTM 421 (531)
T ss_pred ccccchhcccceeeeeccccCCceecCCCCCceeeccccceEeeeeccccccccccc
Confidence 344445555544443343332 2444799999999999999999999999999874
No 30
>KOG4437|consensus
Probab=96.59 E-value=0.00025 Score=76.08 Aligned_cols=35 Identities=40% Similarity=0.730 Sum_probs=32.5
Q ss_pred CCCcceeecccccccccccccccccCceeeeeeecc
Q psy6813 5 AKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQI 40 (758)
Q Consensus 5 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 40 (758)
+..|||+|||. .|+|++||.+|.+|.+||++.|++
T Consensus 3 ~~RFC~DYAKR-~A~C~KCK~~i~KGV~R~GKi~P~ 37 (482)
T KOG4437|consen 3 EQRFCVDYAKR-TAGCKKCKEKIVKGVCRIGKVVPN 37 (482)
T ss_pred CchHHHHHHHH-hhhhHHHHHHHHHhhhhhccccCC
Confidence 56899999996 799999999999999999999995
No 31
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself. PARP, also known as poly(ADP-ribose) synthetase and poly(ADP-ribose) transferase, transfers the ADP-ribose moiety from its substrate, nicotinamide adenine dinucleotide (NAD), to carboxylate groups of aspartic and glutamic residues. Whereas some PARPs might function in genome protection, others appear to play different roles in the cell, including telomere replication and cellular transport. PARP-1 is a multifunctional enzyme. The polypeptide has a highly conserved modular organisation consisting of an N-terminal DNA-binding domain, a central regulating segment, and a C-terminal or F region accommodating the catalytic centre. The F region is composed of two parts: a purely alpha-helical N- terminal domain (alpha-hd), and the mixed alpha/beta C-terminal catalytic domain bearing the putative NAD binding site. Although proteins of the PARP family are related through their PARP catalytic domain, they do not resemble each other outside of that region, but rather, they contain unique domains that distinguish them from each other and hint at their discrete functions. Domains with which the PARP catalytic domain is found associated include zinc fingers, SAP, ankyrin, BRCT, Macro, SAM, WWE and UIM domains [, , ]. The alpha-hd domain is about 130 amino acids in length and consists of an up-up-down-up-down-down motif of helices. It is thought to relay the activation signal issued on binding to damaged DNA [, ]. The PARP catalytic domain is about 230 residues in length. Its core consists of a five-stranded antiparallel beta-sheet and four-stranded mixed beta-sheet. The two sheets are consecutive and are connected via a single pair of hydrogen bonds between two strands that run at an angle of 90 degrees. These central beta-sheets are surrounded by five alpha-helices, three 3(10)-helices, and by a three- and a two-stranded beta-sheet in a 37-residue excursion between two central beta-strands [, ]. The active site, known as the 'PARP signature' is formed by a block of 50 amino acids that is strictly conserved among the vertebrates and highly conserved among all species. The 'PARP signature' is characteristic of all PARP protein family members. It is formed by a segment of conserved amino acid residues formed by a beta-sheet, an alpha-helix, a 3(10)-helix, a beta-sheet, and an alpha-helix [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity; PDB: 2PQF_F 4F0D_A 1PAX_A 1EFY_A 1A26_A 2PAW_A 4PAX_A 3PAX_A 2PAX_A 3P0N_A ....
Probab=96.48 E-value=0.00047 Score=70.62 Aligned_cols=49 Identities=35% Similarity=0.411 Sum_probs=32.7
Q ss_pred cccccCCCCCccchhhHH-HHh-cccccceeecccccccccccCcccCccc
Q psy6813 605 ANYCMTNSTNNVGLLLLC-EVA-LGKVVLRYMFGKGIYFADSVSKSANYCM 653 (758)
Q Consensus 605 a~Yc~~~~~~~~glLlL~-eVA-lGa~~~g~mfGkGiYFAd~~SkSa~Yc~ 653 (758)
..||+++..+-.+++-.. .++ ...+..|.|||+|||||+++++|+.||.
T Consensus 62 ~L~HGt~~~~~~~I~~~G~~~~~~~~~~~g~~fG~GiYfs~~~s~s~~Y~~ 112 (206)
T PF00644_consen 62 LLFHGTSAENICSILRNGFKIDPRKASRNGGMFGKGIYFSDNSSKSAQYSK 112 (206)
T ss_dssp EEEEEETGGGHHHHHHHSS---TTTSCGGCSTTSSSEEEBSSHHHHHTTST
T ss_pred EEeCCCChhhccchhcCCCccCccccccCCceeeeEEEeCcchhhhcccCC
Confidence 346666544333332221 233 4567789999999999999999999996
No 32
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation
Probab=95.86 E-value=0.0024 Score=60.54 Aligned_cols=22 Identities=45% Similarity=0.735 Sum_probs=20.9
Q ss_pred eeecccccccccccCcccCccc
Q psy6813 632 RYMFGKGIYFADSVSKSANYCM 653 (758)
Q Consensus 632 g~mfGkGiYFAd~~SkSa~Yc~ 653 (758)
+.|||+|||||+++|+|++||.
T Consensus 28 ~~~~G~GiYFA~~~s~S~~Y~~ 49 (121)
T cd01439 28 GTMYGKGSYFAKNASYSHQYSK 49 (121)
T ss_pred CCccCCeeecccChhhhhcccc
Confidence 6899999999999999999996
No 33
>PF15633 Tox-ART-HYD1: HYD1 signature containing ADP-ribosyltransferase
Probab=59.32 E-value=5.9 Score=36.35 Aligned_cols=41 Identities=27% Similarity=0.566 Sum_probs=31.9
Q ss_pred eeccCCCcChHHHhhcCCccCCCCCCccccccccceEeccccc
Q psy6813 560 LWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVS 602 (758)
Q Consensus 560 LwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~s 602 (758)
|+|=|+..++-+|+++|--.....-|.. .||.|+||++.+-
T Consensus 1 lyHYTs~~G~n~I~~s~~i~~~a~~p~~--~~~~g~y~t~~ap 41 (96)
T PF15633_consen 1 LYHYTSEKGYNGILESGIIKLKANNPKD--RFGQGQYFTDIAP 41 (96)
T ss_pred CccccchhhhHHhhccceEEeccCCccc--cCCCceEEEecCC
Confidence 5788888999999998876644444544 7999999999653
No 34
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=54.00 E-value=2.8 Score=34.48 Aligned_cols=50 Identities=26% Similarity=0.421 Sum_probs=35.4
Q ss_pred hhHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccch
Q psy6813 177 KQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSK 236 (758)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (758)
++.+++.|..+||.....++.+++=.|+.. .++.+.+.|.+.||+||..+
T Consensus 13 ~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~----------~~~~K~~~A~~~gi~vV~~~ 62 (63)
T PF12738_consen 13 RSQLRKLIEALGGKYSKDLTKKTTHLICSS----------PEGKKYRKAKEWGIPVVSPD 62 (63)
T ss_dssp CCHHHHHHHCTT-EEESSSSTT-SEEEEES------------HHHHHHHHHCTSEEEEHH
T ss_pred HHHHHHHHHHCCCEEeccccCCceEEEEeC----------CCcHHHHHHHHCCCcEECCC
Confidence 357899999999999999988775434321 12467888999999999743
No 35
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=53.07 E-value=11 Score=38.31 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.8
Q ss_pred EEeeccCCCcChHHHhhcCCcc
Q psy6813 558 HLLWHGSRLTNFASIISKGLCI 579 (758)
Q Consensus 558 ~LLwHGSr~~N~~gIL~qGLri 579 (758)
..|||||...+|.+|+.+||+-
T Consensus 95 ~~lyHGT~~~~~~~I~~~GL~p 116 (179)
T PRK00819 95 AVLYHGTSSEELDSILEEGLKP 116 (179)
T ss_pred ceeEeCCCHHHHHHHHHhCCCc
Confidence 3699999999999999999864
No 36
>KOG4177|consensus
Probab=51.28 E-value=5 Score=50.99 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=64.8
Q ss_pred cCCeEEeeccCCCcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCCCCCccchhhHHHHhccccccee
Q psy6813 554 LGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRY 633 (758)
Q Consensus 554 l~N~~LLwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~glLlL~eVAlGa~~~g~ 633 (758)
..++..+||++...+ .+-..+|..+. + .-+.|||.++|||.+++++..|....+.
T Consensus 1029 ~~~~~~~f~~~~~~~--~~~~~~~~~~~--~-~~~~~~~~~~~f~~~~~~~d~~v~~~~~-------------------- 1083 (1143)
T KOG4177|consen 1029 YMAKFVVFAKSNFPN--EGRLRCFCMTD--D-KVDKTLEQQEYFAEVARSRDIEVLGGKG-------------------- 1083 (1143)
T ss_pred HHHHHhhhccCCcch--hhccccccccC--C-ccCcchhhHHHHHHhhhhhhhhhhcccc--------------------
Confidence 457788899996555 44566777642 2 3567999999999999998887654321
Q ss_pred ecccccccccccCcccCccccCCCCCceeEEEEEeecCcceeecccccccCCCCCCCccccC
Q psy6813 634 MFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQ 695 (758)
Q Consensus 634 mfGkGiYFAd~~SkSa~Yc~~~~~~~~r~mLLceVALG~~~e~~~a~~~~~~p~G~~Sv~g~ 695 (758)
|.| |..+...+. +...+++++|.|.+|+........ .+ ++|.+|+.+.
T Consensus 1084 --~~~--~~~~n~~p~-------~~~~~ql~~~~~~~~~~~l~~~~~--~~-~~g~~~~~~~ 1131 (1143)
T KOG4177|consen 1084 --GFA--EPSGNDVPL-------TKAGQQLSFCFVPFLENRLAFSVK--KR-HAGRISFMAE 1131 (1143)
T ss_pred --cee--cccCccccc-------eeccceeEEeeehhhhhhhHHHHH--hh-cCCcceeecc
Confidence 100 000111111 122366999999999876544332 22 4499998875
No 37
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=50.24 E-value=5.6 Score=47.76 Aligned_cols=51 Identities=16% Similarity=0.320 Sum_probs=38.8
Q ss_pred hHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccchhh
Q psy6813 178 QKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFI 238 (758)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 238 (758)
+++|+.|+.|||++.+.|+.++-.-|+-+ .-|| |+++|++.||.|+++...
T Consensus 612 ~eak~~le~lGakv~~SVSkktD~vvaG~---------~aGS-Kl~kA~eLgv~i~~E~~~ 662 (667)
T COG0272 612 DEAKALLEALGAKVSGSVSKKTDYVVAGE---------NAGS-KLAKAQELGVKIIDEEEF 662 (667)
T ss_pred HHHHHHHHHcCCEEeceecccccEEEEcC---------CCCh-HHHHHHHcCCeEecHHHH
Confidence 68899999999999888888763322222 2244 799999999999997643
No 38
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=48.35 E-value=11 Score=45.79 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=40.0
Q ss_pred hHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccc-hhhh
Q psy6813 178 QKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPS-KFIK 239 (758)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~~ 239 (758)
+++++.|+.+||++++.|++++-.-|+- .+.+.|+++|++.||.|+++ .|.+
T Consensus 611 ~e~~~lie~~Ggkv~ssVSkktd~LV~G----------~~aGsKl~KA~~LGI~Ii~e~~f~~ 663 (669)
T PRK14350 611 SVLIDKLTKKGAIFNTCVTKYLDFLLVG----------EKAGLKLKKANNLGIKIMSLFDIKS 663 (669)
T ss_pred HHHHHHHHHcCCEEeccccCCCcEEEEC----------CCCCchHHHHHHcCCEEecHHHHHH
Confidence 6899999999999999999886432221 12235799999999999985 4765
No 39
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=44.86 E-value=11 Score=38.65 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=21.4
Q ss_pred EEeeccCCCcChHHHhhcCCccCCCCCCccccccccceEeccc
Q psy6813 558 HLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADS 600 (758)
Q Consensus 558 ~LLwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~ 600 (758)
..|+|||...+|..|+.+||.- |-...|.||..
T Consensus 106 ~~lyHGT~~~~~~~I~~~GL~~----------m~R~hVHls~~ 138 (186)
T PF01885_consen 106 PILYHGTYRKAWPSILEEGLKP----------MGRNHVHLSTG 138 (186)
T ss_dssp SEEEE--BGGGHHHHHHH-B-------------SSSSEEEES-
T ss_pred CEEEEccchhhHHHHHHhCCCC----------CCCCEEEEeec
Confidence 4599999999999999999763 23456788875
No 40
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=38.03 E-value=15 Score=40.36 Aligned_cols=61 Identities=15% Similarity=0.314 Sum_probs=40.3
Q ss_pred hHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhh-----ccccccch-hhh
Q psy6813 178 QKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEY-----GIHVVPSK-FIK 239 (758)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-f~~ 239 (758)
+++++.|..+||.+++.|+.++.--|.-..+..... ..+.++|+++|++. ||.+++++ |.+
T Consensus 238 ~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~-~~~~~~K~~kA~~l~~~g~~i~ii~E~~f~~ 304 (309)
T PRK06195 238 DEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLN-REEMSNKLKKAIDLKKKGQNIKFLNEEEFLQ 304 (309)
T ss_pred HHHHHHHHHhCCEecCCcccCceEEEECCCcchhhc-ccCcChHHHHHHHHHhCCCCcEEecHHHHHH
Confidence 688999999999999999888633221111111000 12334678999888 99999964 655
No 41
>cd08003 WGR_PARP2_like WGR domain of poly(ADP-ribose) polymerases. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of human PARP-2 and similar proteins. Similar to PARP-1, PARP-2 is ubiquitously expressed and it
Probab=36.97 E-value=2.3 Score=39.36 Aligned_cols=14 Identities=7% Similarity=-0.007 Sum_probs=10.3
Q ss_pred ccccCCCCCCCCCCc
Q psy6813 304 HIPHSFGLADPPLLD 318 (758)
Q Consensus 304 ~i~~~~g~~~~~~~~ 318 (758)
++...|||.|. .+.
T Consensus 41 ~~~~rWGRVG~-~G~ 54 (103)
T cd08003 41 SVWFRWGRVGK-KGQ 54 (103)
T ss_pred EEEEeEccccc-ccc
Confidence 56789999987 444
No 42
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=32.76 E-value=14 Score=29.36 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=36.9
Q ss_pred hhHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccchhhh
Q psy6813 177 KQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFIK 239 (758)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 239 (758)
...+++.|..+||+++..++..++-.|+..... ...+..+...++++|..+|+.
T Consensus 15 ~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~---------~~~~~~~~~~~~~iV~~~Wi~ 68 (72)
T cd00027 15 RDELKELIEKLGGKVTSSVSKKTTHVIVGSDAG---------PKKLLKAIKLGIPIVTPEWLL 68 (72)
T ss_pred HHHHHHHHHHcCCEEeccccCCceEEEECCCCC---------chHHHHHHHcCCeEecHHHHH
Confidence 467899999999999888875554434332221 111456778899999988765
No 43
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=32.29 E-value=15 Score=40.46 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=39.4
Q ss_pred hHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccch-hhh
Q psy6813 178 QKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSK-FIK 239 (758)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~ 239 (758)
+++++.|+.+||.+.+.|+.++..-|+-.. ...+.|+++|+++||.++++. |.+
T Consensus 249 ~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~--------~~~ssK~~kA~~~gi~ii~e~~f~~ 303 (313)
T PRK06063 249 EELVERILHAGLAYSDSVDRDTSLVVCNDP--------APEQGKGYHARQLGVPVLDEAAFLE 303 (313)
T ss_pred HHHHHHHHHcCCEecCccccCccEEEECCC--------CCcccHHHHHHHcCCccccHHHHHH
Confidence 789999999999999999888643222110 011357899999999999975 554
No 44
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=32.21 E-value=19 Score=43.94 Aligned_cols=53 Identities=9% Similarity=0.211 Sum_probs=40.3
Q ss_pred hHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccc-hhhh
Q psy6813 178 QKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPS-KFIK 239 (758)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~~ 239 (758)
++++..|+.+||.+++.|+.++.--|+- -.-|+.|+++|++.||.++++ .|.+
T Consensus 627 ~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G---------~~~g~sKl~kA~~lgi~ii~E~~f~~ 680 (689)
T PRK14351 627 SEAQELVEAHGGNATGSVSGNTDYLVVG---------ENPGQSKRDDAEANDVPTLDEEEFEE 680 (689)
T ss_pred HHHHHHHHHcCCEEcCCcCCCccEEEEc---------CCCChhHHHHHHHCCCeEecHHHHHH
Confidence 6899999999999999998876332211 112446899999999999985 5776
No 45
>PF13151 DUF3990: Protein of unknown function (DUF3990)
Probab=30.96 E-value=20 Score=35.62 Aligned_cols=45 Identities=20% Similarity=0.397 Sum_probs=27.9
Q ss_pred EEeeccCCCcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCC
Q psy6813 558 HLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTN 611 (758)
Q Consensus 558 ~LLwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~ 611 (758)
|.|+|||... +. +-++ .......=||+|-|.++...-+.+|+...
T Consensus 1 M~LYHGS~~~-i~-----~pd~---~~~r~~~DFG~GFY~T~~~~qA~~wA~~~ 45 (154)
T PF13151_consen 1 MILYHGSNQI-IE-----KPDL---SKGRPNLDFGKGFYLTTDKEQAKRWAKRK 45 (154)
T ss_pred CEeecCCCcc-cc-----Ccee---ccCcccCccCceeEcccCHHHHHHHHHhc
Confidence 5799999532 11 1111 11223445999999999887777776554
No 46
>PF13049 DUF3910: Protein of unknown function (DUF3910)
Probab=27.29 E-value=1.6e+02 Score=26.13 Aligned_cols=54 Identities=30% Similarity=0.337 Sum_probs=34.4
Q ss_pred EEEEeCCcceeeeEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeeccccccCCCccccc
Q psy6813 88 ELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQD 149 (758)
Q Consensus 88 ~Vy~~~~~~Y~~~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~~~G~~~~~~ 149 (758)
-+|. ++..| +++-.-..+....|+ |+|-+|+++. +.-+-|.++| ...|..+-.|
T Consensus 16 yiyk-ddvty-da~~idfsl~~ddnr-yklivlk~e~--~~hyk~vqyg---~kpgsqkpfp 69 (93)
T PF13049_consen 16 YIYK-DDVTY-DATSIDFSLENDDNR-YKLIVLKHEE--NTHYKFVQYG---IKPGSQKPFP 69 (93)
T ss_pred eEec-cccee-eeeEEEEEeccCCCe-EEEEEEeccC--cceeEEEEec---cCcCCCCCcc
Confidence 3454 45678 888766666666664 7888888876 4555666776 3345555433
No 47
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=26.78 E-value=42 Score=40.92 Aligned_cols=52 Identities=19% Similarity=0.408 Sum_probs=39.0
Q ss_pred hHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccch-hhh
Q psy6813 178 QKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSK-FIK 239 (758)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~ 239 (758)
+++++.|+.+||.+++.|+.++---|+-. .-| .|+++|+++||.+++++ |.+
T Consensus 608 ~e~~~~i~~~G~~v~~sVs~kt~~lv~G~---------~~g-sK~~kA~~lgI~ii~E~~f~~ 660 (665)
T PRK07956 608 DEAKEKLEALGAKVSGSVSKKTDLVVAGE---------AAG-SKLAKAQELGIEVLDEEEFLR 660 (665)
T ss_pred HHHHHHHHHcCCEEeCcccCCCCEEEECC---------CCC-hHHHHHHHcCCeEEcHHHHHH
Confidence 78999999999999999988763212111 123 57999999999999965 654
No 48
>PF14164 YqzH: YqzH-like protein
Probab=24.64 E-value=81 Score=26.99 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=26.2
Q ss_pred HhcHHHHHHHHHhccccccCCCCCCCCHHHHHHH
Q psy6813 373 LFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQG 406 (758)
Q Consensus 373 I~d~~~~~~~l~e~~~D~~kmPLGkLS~~qI~~a 406 (758)
.|=.+++.+.|..+|.|...+||..--.+++.+.
T Consensus 4 k~I~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~ 37 (64)
T PF14164_consen 4 KLIEKMIINCLRQYGYDVECMPLSDEEWEELCKH 37 (64)
T ss_pred HHHHHHHHHHHHHhCCcccCCCCCHHHHHHHHHH
Confidence 3446788899999999999999988655555443
No 49
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=23.03 E-value=18 Score=30.07 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=38.0
Q ss_pred hhHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccchhhh
Q psy6813 177 KQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFIK 239 (758)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 239 (758)
.+.+++.|.++||++...++..+.--|.... .+...+...+...++++|..+++.
T Consensus 21 ~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~--------~~~~~k~~~~~~~~i~iV~~~Wi~ 75 (78)
T PF00533_consen 21 REELEQLIKKHGGTVSNSFSKKTTHVIVGNP--------NKRTKKYKAAIANGIPIVSPDWIE 75 (78)
T ss_dssp HHHHHHHHHHTTEEEESSSSTTSSEEEESSS--------HCCCHHHHHHHHTTSEEEETHHHH
T ss_pred HHHHHHHHHHcCCEEEeecccCcEEEEeCCC--------CCccHHHHHHHHCCCeEecHHHHH
Confidence 3678889999999997777666544331111 122456778889999999988764
No 50
>cd01436 Dipth_tox_like Mono-ADP-ribosylating toxins catalyze the transfer of ADP_ribose from NAD+ to eukaryotic Elongation Factor 2, halting protein synthesis. A single molecule of delivered toxin is sufficient to kill a cell. These toxins share mono-ADP-ribosylating activity with a variety of bacterial toxins, such as cholera toxin and pertussis toxin. The structural core is homologous to the poly-ADP ribosylating enzymes such as the PARP enzymes and Tankyrase. Diphtheria toxin is encoded by a lysogenic bacteriophage. Both diphtheria toxin and Pseudomonas aeruginosa exotoxin A are multi-domain proteins. These domains provide a EF2 ADP_ribosylating, receptor-binding, and intracellular trafficking/transmembrane functions .
Probab=22.41 E-value=59 Score=31.15 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=35.3
Q ss_pred eccCCCcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCC
Q psy6813 561 WHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTN 611 (758)
Q Consensus 561 wHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~ 611 (758)
+|||...-..+|.. |.+-.|.....+..---+|.|.||..-.+++|....
T Consensus 3 YHGT~~~~~~sI~~-gI~~~~~g~~~~~d~~W~GfY~a~~~~~A~GYa~d~ 52 (147)
T cd01436 3 YHGTKPGYVDSIQK-GIQKPKSGTQGNYDDDWKGFYSTDNKYDAAGYSVDN 52 (147)
T ss_pred ccccchHHHHHHHh-hccCCCCCCCcchhhhhcceeecCCHhhhcceeecc
Confidence 79999888888877 666443322222223348999999999999997653
No 51
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=20.71 E-value=32 Score=27.86 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=35.1
Q ss_pred hhHHHHHHHhcCCccccccch-hhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccchhhh
Q psy6813 177 KQKLTASILRLGGDTVSDVRS-HVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFIK 239 (758)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 239 (758)
.+.+++.|...||+++..++. .++-.|++...... ..+..+...++++|+..++.
T Consensus 19 ~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~--------~~~~~~~~~~~~iV~~~Wi~ 74 (80)
T smart00292 19 RDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGK--------LELLLAIALGIPIVTEDWLL 74 (80)
T ss_pred HHHHHHHHHHcCCEEecccCccceeEEEEcCCCCcc--------HHHHHHHHcCCCCccHHHHH
Confidence 356788899999999887764 33222322222111 11456778899999988765
Done!