Query psy6813
Match_columns 758
No_of_seqs 316 out of 1018
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 19:05:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dqy_C Poly [ADP-ribose] polym 100.0 2E-124 6E-129 1059.7 40.9 492 62-758 2-494 (506)
2 3kjd_A Poly [ADP-ribose] polym 100.0 6.3E-90 2.2E-94 750.0 30.7 349 358-757 19-368 (368)
3 1efy_A Poly (ADP-ribose) polym 100.0 1.7E-86 6E-91 722.9 33.6 348 359-758 1-349 (350)
4 3c4h_A Poly(ADP-ribose) polyme 100.0 5.9E-80 2E-84 673.5 25.2 344 357-754 5-357 (357)
5 3u9h_A Tankyrase-2; protein-li 100.0 2.9E-35 1E-39 304.9 15.7 191 497-755 29-235 (240)
6 2x5y_A Zinc finger CCCH-type a 100.0 1.7E-35 5.7E-40 292.9 11.7 166 496-754 2-171 (173)
7 2pqf_A Poly [ADP-ribose] polym 100.0 3.6E-33 1.2E-37 281.7 14.5 169 496-755 9-193 (198)
8 2eoc_A Poly [ADP-ribose] polym 100.0 7.4E-33 2.5E-37 259.7 11.9 104 64-175 2-107 (124)
9 3blj_A Poly(ADP-ribose) polyme 100.0 1.7E-32 5.8E-37 281.3 14.0 169 497-754 35-220 (221)
10 3hkv_A PARP-10, poly [ADP-ribo 100.0 4.3E-32 1.5E-36 277.1 14.4 174 498-756 10-200 (217)
11 3smj_A Poly [ADP-ribose] polym 100.0 7.8E-32 2.7E-36 271.0 14.2 170 498-754 8-192 (193)
12 4f0d_A PARP-16, poly [ADP-ribo 99.8 8.7E-19 3E-23 183.8 10.5 101 500-611 94-195 (277)
13 1v9x_A Poly (ADP-ribose) polym 99.2 2.9E-12 1E-16 118.0 3.8 45 2-46 5-49 (114)
14 3od8_A Poly [ADP-ribose] polym 99.2 5.5E-12 1.9E-16 116.2 3.8 45 2-46 23-67 (116)
15 2dmj_A Poly (ADP-ribose) polym 99.2 6.1E-12 2.1E-16 114.7 3.8 46 1-46 8-54 (106)
16 1uw0_A DNA ligase III; DNA rep 99.1 2.4E-11 8.4E-16 112.5 3.1 39 5-43 3-41 (117)
17 4av1_A Poly [ADP-ribose] polym 99.1 4.2E-11 1.4E-15 122.3 3.4 45 2-46 24-68 (223)
18 3odc_A Poly [ADP-ribose] polym 99.0 2.5E-10 8.4E-15 104.7 3.5 40 3-42 5-44 (111)
19 2cs2_A Poly [ADP-ribose] polym 98.9 6.2E-10 2.1E-14 105.3 2.7 37 5-41 15-51 (134)
20 4av1_A Poly [ADP-ribose] polym 98.5 8.7E-09 3E-13 105.3 0.0 39 4-42 130-168 (223)
21 1efy_A Poly (ADP-ribose) polym 98.3 2.4E-07 8.3E-12 100.8 3.4 75 263-343 41-115 (350)
22 3kjd_A Poly [ADP-ribose] polym 98.3 2.9E-07 1E-11 100.5 3.4 75 263-343 60-134 (368)
23 3c4h_A Poly(ADP-ribose) polyme 98.3 2.8E-07 9.5E-12 100.6 3.1 76 263-343 47-122 (357)
24 4dqy_C Poly [ADP-ribose] polym 98.1 8E-07 2.7E-11 100.9 3.3 75 263-343 186-260 (506)
25 2ra8_A Uncharacterized protein 98.0 2.6E-06 8.8E-11 93.0 5.2 61 107-175 8-68 (362)
26 2cok_A Poly [ADP-ribose] polym 98.0 2.4E-06 8.3E-11 78.5 3.7 78 178-262 27-106 (113)
27 2pqf_A Poly [ADP-ribose] polym 96.6 0.00029 9.9E-09 70.6 -0.5 24 630-653 100-123 (198)
28 2x5y_A Zinc finger CCCH-type a 95.9 0.00078 2.7E-08 66.1 -1.8 23 631-653 87-109 (173)
29 3blj_A Poly(ADP-ribose) polyme 95.3 0.0014 4.7E-08 66.9 -2.3 25 628-652 122-146 (221)
30 3u9h_A Tankyrase-2; protein-li 95.3 0.0023 7.7E-08 66.2 -0.8 26 630-655 128-153 (240)
31 4f0d_A PARP-16, poly [ADP-ribo 95.1 0.0035 1.2E-07 65.8 -0.2 64 607-673 149-220 (277)
32 3smj_A Poly [ADP-ribose] polym 95.1 0.0034 1.2E-07 62.7 -0.4 22 631-652 97-118 (193)
33 3hkv_A PARP-10, poly [ADP-ribo 94.5 0.0057 1.9E-07 62.3 -0.5 22 631-652 103-126 (217)
34 2k6g_A Replication factor C su 89.0 0.077 2.6E-06 48.2 0.1 53 178-239 50-103 (109)
35 2ebu_A Replication factor C su 87.4 0.1 3.5E-06 47.6 -0.2 53 178-239 40-93 (112)
36 1l7b_A DNA ligase; BRCT, autos 86.6 0.082 2.8E-06 46.6 -1.3 52 178-239 24-76 (92)
37 2d8m_A DNA-repair protein XRCC 73.6 0.63 2.1E-05 43.0 -0.2 53 177-239 38-90 (129)
38 3l3e_A DNA topoisomerase 2-bin 70.8 1.3 4.5E-05 39.2 1.2 55 178-239 32-86 (107)
39 1dgs_A DNA ligase; AMP complex 68.7 1 3.5E-05 52.8 0.0 52 178-239 604-656 (667)
40 2owo_A DNA ligase; protein-DNA 56.9 2.3 7.7E-05 49.9 0.0 52 178-239 615-667 (671)
41 1wfx_A Probable RNA 2'-phospho 40.8 10 0.00034 37.5 1.7 22 558-579 92-113 (186)
42 3olc_X DNA topoisomerase 2-bin 27.4 16 0.00054 38.4 0.6 53 177-239 215-268 (298)
43 4id3_A DNA repair protein REV1 20.7 22 0.00076 29.7 0.2 50 178-239 24-75 (92)
No 1
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A
Probab=100.00 E-value=1.7e-124 Score=1059.69 Aligned_cols=492 Identities=46% Similarity=0.824 Sum_probs=427.3
Q ss_pred CCCceeEEEecCCcccCCCCCCCCceEEEEeCCcceeeeEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeecccccc
Q psy6813 62 SKSGTVKLQIKDGLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTS 141 (758)
Q Consensus 62 ~~~~~~k~~~k~~~~VD~~~~~~~~~~Vy~~~~~~Y~~~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~~ 141 (758)
|.++++|+++||+++|||+|++.+++|||++++.+| +|+|++||+++|+|+||+|||++++. .+.|+|||+|||||+.
T Consensus 2 ~~~~~~~~~~kg~~~Vd~~~~~~~~~~Vy~~~~~~Y-~~~L~~td~~~n~NkfY~lQll~~~~-~~~y~v~~rWGRVG~~ 79 (506)
T 4dqy_C 2 KSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVF-SATLGLVDIVKGTNSYYKLQLLEDDK-ENRYWIFRSWGRVGTV 79 (506)
T ss_dssp -------------CCCCGGGSCTTTSCCCEETTEES-EEEEEEECTTTCCEEEEEEECC---------CEEEEEEETTSS
T ss_pred CCCceEEEEEeCCeecCCccCCCCceEEEEeCCeEE-EEEEEcccccCCCcceEEEEEEEcCC-CCEEEEEEEECccCcc
Confidence 568899999999999999999999999999999999 99999999999999999999999876 6799999999999985
Q ss_pred CCCcccccCCCHHHHHHHHHHHHHhHhCCCCccchhhHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhh
Q psy6813 142 IGGTKVQDFKDVESAFDEFDRCFEKETGNTSGKDAKQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARA 221 (758)
Q Consensus 142 ~G~~~~~~f~~~~~A~~~F~k~F~~KTgn~w~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (758)
+||+++++|+++++|+++|+++|++||||+|++|
T Consensus 80 ~Gq~~l~~~~s~~~Ai~~F~k~F~~KTgn~W~~R---------------------------------------------- 113 (506)
T 4dqy_C 80 IGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWHSK---------------------------------------------- 113 (506)
T ss_dssp CEEEEEECCSCSHHHHHHHHHHHHHHHSSCSSCS----------------------------------------------
T ss_pred cccceeccCCCHHHHHHHHHHHHHHHhcCCcccc----------------------------------------------
Confidence 6999999999999999999999999999999998
Q ss_pred hHHHHhhccccccchhhhhhhchhHHHHHHhhccCCCCCCchhhhhhhhhhhHHHHHHHhhccccccchhhhhhcCCCcc
Q psy6813 222 MEELKEYGIHVVPSKFIKDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSF 301 (758)
Q Consensus 222 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~s~~~~~~~y~il~~~~~~~~~~~~~~~~~~~i~~~~~ky 301 (758)
+|++ +||||
T Consensus 114 --------------~f~k---------------------------------------------------------~pgKy 122 (506)
T 4dqy_C 114 --------------NFTK---------------------------------------------------------YPKKF 122 (506)
T ss_dssp --------------SCCC---------------------------------------------------------CTTCC
T ss_pred --------------Cccc---------------------------------------------------------cCCcc
Confidence 5877 89999
Q ss_pred eeccccCCCCCCCCCCchHHHHHHHHHHHHHHHhhhhccccccccccccccccCCCCCCCCCHHHHHHHHHHhcHHHHHH
Q psy6813 302 YTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKYEDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTA 381 (758)
Q Consensus 302 y~~i~~~~g~~~~~~~~~~~~v~~k~e~l~~~~~~~~e~~y~~~~~~~k~~~~~~~~~s~L~~~Vq~Lvk~I~d~~~~~~ 381 (758)
++ +|+||+.+++..+.......++|+|+++||+||++|||+++|++
T Consensus 123 ~~----------------------------------ve~d~~~~~~~~~~~~~~~~~~s~L~~~Vq~Li~lIfd~~~~~~ 168 (506)
T 4dqy_C 123 YP----------------------------------LEIDYGQDEEAVKKLTVNPGTKSKLPKPVQDLIKMIFDVESMKK 168 (506)
T ss_dssp EE----------------------------------ECBC-----------------CCCSCHHHHHHHHHHSCHHHHHH
T ss_pred ce----------------------------------eecccccchhhhhhhcccCCCCCCCCHHHHHHHHHHhHHHHHHH
Confidence 99 77777653221111011245689999999999999999999999
Q ss_pred HHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHhhhhhhhcccccCCCCCCCCCCcHHHHHH
Q psy6813 382 TLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQ 461 (758)
Q Consensus 382 ~l~e~~~D~~kmPLGkLS~~qI~~a~~iL~ei~~~l~~~~~~~~~~~li~~lsn~fYtlIPh~fg~~~~~lid~~~~l~~ 461 (758)
+|.+|++|+.+||||+||+.||.+||++|++|+++|++.. ....+ .+|||+|||+|||+||+++||+|++.+.|++
T Consensus 169 ~m~~~~~D~~k~PLGkLS~~qI~~g~~vL~~i~~~l~~~~---~~~~l-~~lsn~fYtlIPh~fg~~~pp~i~~~~~l~~ 244 (506)
T 4dqy_C 169 AMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGS---SDSQI-LDLSNRFYTLIPHDFGMKKPPLLNNADSVQA 244 (506)
T ss_dssp HHHTTTBCCSSTTTSCBCHHHHHHHHHHHHHHHHHHHTTC---CHHHH-HHHHHHHHHHSCBCCTTSCCCCCCSHHHHHH
T ss_pred HHHHhCCChhhCCCccCCHHHHHHHHHHHHHHHHHHhccc---cHHHH-HHHHhhhhEeCCccccCCCCCccCCHHHHHH
Confidence 9999999999999999999999999999999999998754 23444 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccC-CCCCCCCchhHHhhcCcEEEEcCCCChHHHHHHHHHHhcccCCCcCcccccceeEEee
Q psy6813 462 KMEMIDAMTQIELAYTIKQEG-PSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVS 540 (758)
Q Consensus 462 k~~lLe~L~dIe~A~~li~~~-~~~~~~Pld~~Y~~L~~~L~~Ld~~S~Ey~~I~ky~~nT~~~~h~~~~l~I~~IfrV~ 540 (758)
+++||++|.||++|++|++.. .....||+|.+|++|+|+|++|+++|+||++|++||++|++++|..|.++|++||||+
T Consensus 245 k~~ll~~L~dieiA~~l~~~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~~~~~T~~~~h~~~~~~I~~I~rI~ 324 (506)
T 4dqy_C 245 KAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIE 324 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCCCTTSCHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHTCCSSCTTCCCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHhCcEEEECCCCChHHHHHHHHHHhccCcccccCCceeEeEEEEc
Confidence 999999999999999999865 3467899999999999999999999999999999999999999988999999999999
Q ss_pred cchhhhccccccccCCeEEeeccCCCcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCCCCCccchhh
Q psy6813 541 RHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLL 620 (758)
Q Consensus 541 r~~E~~rF~~~k~l~N~~LLwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~glLl 620 (758)
|.+|+++|+++++++|+++|||||+.+||.+||++||+++|++++.+|+|||+|||||+++++|++||+++..
T Consensus 325 ~~~e~~~f~~~k~~~N~~lL~HGT~~~n~~~Il~~Gf~~~~~~a~~~G~~fGkGiYFA~~askS~~Y~~~~~~------- 397 (506)
T 4dqy_C 325 REGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQG------- 397 (506)
T ss_dssp ETTTTTTTHHHHSSSCEEEEEEECCTTTHHHHHHHCSCCCCSSSCCTTCSSCSSEEEBSSHHHHHTTSCCCSS-------
T ss_pred cHHHHhhHHHhhcCCCceEEecCCChHhHHHHHhcCCCcCCccCCcCCceeeeeEEecchhhccccccCCCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999888876532
Q ss_pred HHHHhcccccceeecccccccccccCcccCccccCCCCCceeEEEEEeecCcceeecccccccCCCCCCCccccCCCccC
Q psy6813 621 LCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCP 700 (758)
Q Consensus 621 L~eVAlGa~~~g~mfGkGiYFAd~~SkSa~Yc~~~~~~~~r~mLLceVALG~~~e~~~a~~~~~~p~G~~Sv~g~G~~~P 700 (758)
++.|+||||+||||++++++.+++++.||+|||||+|+|++.|
T Consensus 398 -------------------------------------~~~~~mll~~V~lG~~~~~~~~~~~~~~p~G~dSv~g~g~~~P 440 (506)
T 4dqy_C 398 -------------------------------------DPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTP 440 (506)
T ss_dssp -------------------------------------SCEEEEEEEEEECCSEEEESSCCCCSSCCTTCCEEEECCSEEE
T ss_pred -------------------------------------CCeEEEEEEEEecCCceecccchhhhccCCCCceEEeCCcCcC
Confidence 3457799999999999999988889999999999999999999
Q ss_pred CCCCCeeecCCeEeeCCccccCCCCcCCCCCCCCcEEEEecCCceeeeeEEEEEEEeC
Q psy6813 701 DPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK 758 (758)
Q Consensus 701 dp~~~~~~~dgv~vP~G~~i~~p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~~~~~~ 758 (758)
||++. +++|||+||+|++++.+ ..+++|+||||||||++||||||||+|+|+|+
T Consensus 441 ~p~~~-~~~dGv~vP~G~~~~~~---~~~~~l~ynEyiVYd~~Qir~rYLv~v~~~~~ 494 (506)
T 4dqy_C 441 DPSAN-ISLDGVDVPLGTGISSG---VNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 494 (506)
T ss_dssp CGGGC-EESSSCEECCCCEEECS---CCCCSCSBCEEEESSGGGEEEEEEEEEECCCC
T ss_pred Ccccc-cccCCeEEECCCcccCC---CCCCcccccceEEEchHHeeEEEEEEEEEEcc
Confidence 99998 78899999999999744 34688999999999999999999999999986
No 2
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A
Probab=100.00 E-value=6.3e-90 Score=750.00 Aligned_cols=349 Identities=40% Similarity=0.726 Sum_probs=321.0
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHhhhhh
Q psy6813 358 IECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSF 437 (758)
Q Consensus 358 ~~s~L~~~Vq~Lvk~I~d~~~~~~~l~e~~~D~~kmPLGkLS~~qI~~a~~iL~ei~~~l~~~~~~~~~~~li~~lsn~f 437 (758)
.+|+|+++||+||++|||+++|+++|.+|++|+.+||||+||++||.+||++|++|+++|++.. .... +.+|||+|
T Consensus 19 ~~skL~~~vq~li~lIfd~~~~~~~m~~~~~D~~k~PLGkLSk~qI~~g~~vL~~i~~~l~~~~---~~~~-l~~lsn~f 94 (368)
T 3kjd_A 19 YFQSMDLRVQELIKLICNVQAMEEMMMEMKYNTKKAPLGKLTVAQIKAGYQSLKKIEDCIRAGQ---HGRA-LMEACNEF 94 (368)
T ss_dssp HHCCCCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCGGGCCHHHHHHHHHHHHHHHHHHHTTC---CSHH-HHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCccccCHHHHHHHHHHHHHHHHHHhccc---chHH-HHHHHhhh
Confidence 4689999999999999999999999999999999999999999999999999999999998654 2234 48999999
Q ss_pred hhcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCchhHHhhcCcEEEEcCCCChHHHHHHHH
Q psy6813 438 YTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKY 517 (758)
Q Consensus 438 YtlIPh~fg~~~~~lid~~~~l~~k~~lLe~L~dIe~A~~li~~~~~~~~~Pld~~Y~~L~~~L~~Ld~~S~Ey~~I~ky 517 (758)
||+|||+||+++||+|++.+.|++|++||++|.||++|++|++.......||+|.+|++|+|+|++|+++|+||++|++|
T Consensus 95 YtlIPh~fg~~~pp~I~~~~~l~~k~~lle~L~dieiA~~l~~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~y 174 (368)
T 3kjd_A 95 YTRIPHDFGLRTPPLIRTQKELSEKIQLLEALGDIEIAIKLVKTELQSPEHPLDQHYRNLHCALRPLDHESYEFKVISQY 174 (368)
T ss_dssp HHHSCBCCTTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHC----CCSCHHHHHHHHHTEEEEECCTTSHHHHHHHHH
T ss_pred hhhCCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhHHHHhcCcEEEEcCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999986655578999999999999999999999999999999
Q ss_pred HHhcccCCCcCcccccceeEEeecchhhhccccccccCCeEEeeccCCCcChHHHhhcCCccCCCCCCccccccccceEe
Q psy6813 518 VQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYF 597 (758)
Q Consensus 518 ~~nT~~~~h~~~~l~I~~IfrV~r~~E~~rF~~~k~l~N~~LLwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYF 597 (758)
|++|++++|..|+++|++||||+|.+|+++|+ ++++|+++|||||+.+||.+|+++||+++|++++.+|+|||+||||
T Consensus 175 ~~~T~~~~h~~~~~~I~~IfrI~r~~e~~~F~--k~~~N~~lLwHGT~~~n~~~Il~~Gf~~~~~~~~~~g~~fGkGIYF 252 (368)
T 3kjd_A 175 LQSTHAPTHSDYTMTLLDLFEVEKDGEKEAFR--EDLHNRMLLWHGSRMSNWVGILSHGLRIAHPEAPITGYMFGKGIYF 252 (368)
T ss_dssp HHHTCCTTCTTCEEEEEEEEEEEETTHHHHSC--TTCSCEEEEEEECCGGGHHHHHHHCSCCCCTTSCGGGSTTCSSEEE
T ss_pred HHhcCCcccCcCceeEEEEEEecchHHHHHHh--hcCCCceEEEeCCCHHHHHHHHHcCCCcccccccccCceeeeEEEc
Confidence 99999999988899999999999999999998 6899999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCccchhhHHHHhcccccceeecccccccccccCcccCccccCCCCCceeEEEEEeecCcceeec
Q psy6813 598 ADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKT 677 (758)
Q Consensus 598 AD~~sKSa~Yc~~~~~~~~glLlL~eVAlGa~~~g~mfGkGiYFAd~~SkSa~Yc~~~~~~~~r~mLLceVALG~~~e~~ 677 (758)
|+++++|++||.+.. .++.|+||||+|+||++.+++
T Consensus 253 A~~~skS~~Y~~~~~--------------------------------------------~~~~~~mlLc~V~lG~~~~~~ 288 (368)
T 3kjd_A 253 ADMSSKSANYCFASR--------------------------------------------LKNTGLLLLSEVALGQCNELL 288 (368)
T ss_dssp BSSHHHHHHTTCCCS--------------------------------------------SSCEEEEEEEEEECCSEEEES
T ss_pred cccccccccccCCCC--------------------------------------------CCCeEEEEEEEEecCCceecc
Confidence 999999998887542 234577999999999999998
Q ss_pred cccc-ccCCCCCCCccccCCCccCCCCCCeeecCCeEeeCCccccCCCCcCCCCCCCCcEEEEecCCceeeeeEEEEEEE
Q psy6813 678 QAEF-VTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFN 756 (758)
Q Consensus 678 ~a~~-~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~i~~p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~~~~ 756 (758)
.+++ +.+||+|||||+|+|++.|+|+..+++ |||+||+|++++.|.....+.+|+||||||||++||||||||+|+|+
T Consensus 289 ~~~~~~~~pP~G~dSv~g~G~~~P~~~~~~~~-dgv~vP~G~~~~~~~~~~~~~~L~ynEyIVYd~~Qir~rYLv~v~~~ 367 (368)
T 3kjd_A 289 EANPKAEGLLQGKHSTKGLGKMAPSSAHFVTL-NGSTVPLGPASDTGILNPDGYTLNYNEYIVYNPNQVRMRYLLKVQFN 367 (368)
T ss_dssp SCCTTGGGGCTTCCEEEECEEEEECGGGCEEE-TTEEECCSCEEECCCCCSSSCCEEECEEEESSGGGEEEEEEEEEEEE
T ss_pred ccCcccccCCCCCceEEeeCCCcCCccccccc-CCEEeeCCCcccCCCCCCcCccccCCceEEechhHeeEEEEEEEEeE
Confidence 8774 789999999999999999999999888 99999999999876533345679999999999999999999999999
Q ss_pred e
Q psy6813 757 Y 757 (758)
Q Consensus 757 ~ 757 (758)
|
T Consensus 368 ~ 368 (368)
T 3kjd_A 368 F 368 (368)
T ss_dssp C
T ss_pred C
Confidence 8
No 3
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*
Probab=100.00 E-value=1.7e-86 Score=722.88 Aligned_cols=348 Identities=49% Similarity=0.891 Sum_probs=324.3
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHhhhhhh
Q psy6813 359 ECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFY 438 (758)
Q Consensus 359 ~s~L~~~Vq~Lvk~I~d~~~~~~~l~e~~~D~~kmPLGkLS~~qI~~a~~iL~ei~~~l~~~~~~~~~~~li~~lsn~fY 438 (758)
+|+|+++||+||++|||+++|+++|.+|++|+.+||||+||++||.+||++|++|+++|++.. ....+ .+|||+||
T Consensus 1 ~s~L~~~v~~li~~i~~~~~~~~~~~~~~~d~~k~PlGkLs~~qi~~~~~vL~~i~~~l~~~~---~~~~l-~~ls~~fy 76 (350)
T 1efy_A 1 KSKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVSDGG---SESQI-LDLSNRFY 76 (350)
T ss_dssp CCCSCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCGGGCCHHHHHHHHHHHHHHHHHHHTTC---CHHHH-HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCcccCCHHHHHHHHHHHHHHHHHHhccc---chHHH-HHHHHhHH
Confidence 489999999999999999999999999999999999999999999999999999999998765 23444 89999999
Q ss_pred hcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-CCCCchhHHhhcCcEEEEcCCCChHHHHHHHH
Q psy6813 439 THIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTIKQEGPSA-GVHPLVNCYEKLQANIKSVDTSHPHYEIIHKY 517 (758)
Q Consensus 439 tlIPh~fg~~~~~lid~~~~l~~k~~lLe~L~dIe~A~~li~~~~~~-~~~Pld~~Y~~L~~~L~~Ld~~S~Ey~~I~ky 517 (758)
|+|||+||+.+||+|++.+.|++|++||++|.||++|++|+..+... ..||+|.+|++|+|+|++|+++|+||++|++|
T Consensus 77 t~IPh~fg~~~p~~i~~~~~l~~k~~lle~L~die~A~~l~~~~~~~~~~~pld~~y~~L~~~l~~L~~~s~Ey~~I~~~ 156 (350)
T 1efy_A 77 TLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLLDIEVAYSLLRGGNEDGDKDPIDINYEKLRTDIKVVDKDSEEAKIIKQY 156 (350)
T ss_dssp HHSCBCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCHHHHHHHHTCEEEEECCTTSHHHHHHHHH
T ss_pred hhcCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHhCCEEEEcCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999866443 48999999999999999999999999999999
Q ss_pred HHhcccCCCcCcccccceeEEeecchhhhccccccccCCeEEeeccCCCcChHHHhhcCCccCCCCCCccccccccceEe
Q psy6813 518 VQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYF 597 (758)
Q Consensus 518 ~~nT~~~~h~~~~l~I~~IfrV~r~~E~~rF~~~k~l~N~~LLwHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYF 597 (758)
|++|++.+|..++++|++||||+|.+++++|+.+++.+|+++|||||+.+||.+|+++||+++|++++.+|+|||+||||
T Consensus 157 ~~~t~~~~h~~~~~~I~~I~rV~~~~~~~~f~~~k~~~n~~~L~HGt~~~n~~~Il~~Gf~~~~~~~~~~g~~fG~GiYf 236 (350)
T 1efy_A 157 VKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYF 236 (350)
T ss_dssp HHHTCCGGGCSEEEEEEEEEEEEETTHHHHHGGGGGSSCEEEEEEEECGGGHHHHHHHCSCCCCTTSCGGGSTTSSSEEE
T ss_pred HhcccCCCCCCCcccccceEEecCHHHHHHHHHhhccCCeeEEEeCCchHHHHHHHHcCCCcccccCCCccCceeccccc
Confidence 99999989988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCCccchhhHHHHhcccccceeecccccccccccCcccCccccCCCCCceeEEEEEeecCcceeec
Q psy6813 598 ADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKT 677 (758)
Q Consensus 598 AD~~sKSa~Yc~~~~~~~~glLlL~eVAlGa~~~g~mfGkGiYFAd~~SkSa~Yc~~~~~~~~r~mLLceVALG~~~e~~ 677 (758)
|+++++|++||.++. .++.|+||||+|+||++.++.
T Consensus 237 a~~~skS~~Y~~~~~--------------------------------------------~~~~~~m~Lc~V~lG~~~~~~ 272 (350)
T 1efy_A 237 ADMVSKSANYCHTSQ--------------------------------------------ADPIGLILLGEVALGNMYELK 272 (350)
T ss_dssp BSSHHHHHGGGCCCS--------------------------------------------SSCEEEEEEEEEECCSEEEES
T ss_pred ccchhhhhccccCCC--------------------------------------------CCCeEEEEEEEEecCCceecc
Confidence 999999999987642 234577999999999999998
Q ss_pred ccccccCCCCCCCccccCCCccCCCCCCeeecCCeEeeCCccccCCCCcCCCCCCCCcEEEEecCCceeeeeEEEEEEEe
Q psy6813 678 QAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNY 757 (758)
Q Consensus 678 ~a~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~i~~p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~~~~~ 757 (758)
.++++.+||+|||||+|+|++.|||++ ..+.|||+||+|++++. ...+++|.||||||||++||+|||||+|+|+|
T Consensus 273 ~~~~~~~~p~g~~Sv~g~g~~~Pd~~~-~~~~dgv~vP~G~~~~~---~~~~~~l~~~EyVVYd~~Qi~p~YLI~~~~~~ 348 (350)
T 1efy_A 273 NASHITKLPKGKHSVKGLGKTAPDPTA-TTTLDGVEVPLGNGIST---GINDTCLLYNEYIVYDVAQVNLKYLLKLKFNY 348 (350)
T ss_dssp SCCCCCSCCTTCCEEEECCSEEECGGG-CEEETTEEECCSCEEEC---SCCSSSCSBCEEEESCGGGEEEEEEEEEEEEE
T ss_pred CcchhhhcCCCCcceeeccccCCCccc-cccCCCeeeecCcccCC---CCCCCCCCCCEEEEEchhheeEEEEEEEEEEe
Confidence 888888999999999999999999998 67889999999999973 34567899999999999999999999999999
Q ss_pred C
Q psy6813 758 K 758 (758)
Q Consensus 758 ~ 758 (758)
+
T Consensus 349 ~ 349 (350)
T 1efy_A 349 K 349 (350)
T ss_dssp C
T ss_pred c
Confidence 6
No 4
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A*
Probab=100.00 E-value=5.9e-80 Score=673.52 Aligned_cols=344 Identities=33% Similarity=0.635 Sum_probs=309.9
Q ss_pred CCCCCCCHHHHHHHHHHhcHHHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHhhhh
Q psy6813 357 DIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNS 436 (758)
Q Consensus 357 ~~~s~L~~~Vq~Lvk~I~d~~~~~~~l~e~~~D~~kmPLGkLS~~qI~~a~~iL~ei~~~l~~~~~~~~~~~li~~lsn~ 436 (758)
.++|+|+++||+||++|||+++|+++|.+|++|+.+||||+||++||.+||++|++|+++|++... ....+.+|||+
T Consensus 5 ~~~s~L~~~v~~li~~i~~~~~~~~~~~~~~~d~~k~PlGkLs~~qi~~g~~vL~~i~~~l~~~~~---~~~~~~~ls~~ 81 (357)
T 3c4h_A 5 VQPCSLDPATQKLITNIFSKEMFKNTMALMDLDVKKMPLGKLSKQQIARGFEALEALEEALKGPTD---GGQSLEELSSH 81 (357)
T ss_dssp ECCCCSCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCTTTCCHHHHHHHHHHHHHHHHHHTSCCC---SCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCcccCCHHHHHHHHHHHHHHHHHHhcccc---chHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999999999986542 12224899999
Q ss_pred hhhcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC-----CCCchhHHhhcCcEEEEcCCCChHH
Q psy6813 437 FYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTIKQEGPSAG-----VHPLVNCYEKLQANIKSVDTSHPHY 511 (758)
Q Consensus 437 fYtlIPh~fg~~~~~lid~~~~l~~k~~lLe~L~dIe~A~~li~~~~~~~-----~~Pld~~Y~~L~~~L~~Ld~~S~Ey 511 (758)
|||+|||+||+.+||+|++.+.|++|++||++|.||++|++|+....... .||+|.+|++|+|+|++|+++|+||
T Consensus 82 fyt~IPh~fg~~~p~~i~~~~~l~~k~~lle~l~di~~a~~l~~~~~~~~~~~~~~~pld~~y~~L~~~l~~L~~~s~Ey 161 (357)
T 3c4h_A 82 FYTVIPHNFGHSQPPPINSPELLQAKKDMLLVLADIELAQALQAVSEQEKTVEEVPHPLDRDYQLLKCQLQLLDSGAPEY 161 (357)
T ss_dssp HHHHSCBCSTTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCSEECCHHHHHHHHHCCEEEECCTTSTTH
T ss_pred HHhhcCcccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCChhHHHHHHhCCEEEECCCCChHH
Confidence 99999999999999999999999999999999999999999997653332 7999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCcCcccccceeEEeecchhhhccccccccCCeEEeeccCCCcChHHHhhcCCccCCCCCCcccccc
Q psy6813 512 EIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMF 591 (758)
Q Consensus 512 ~~I~ky~~nT~~~~h~~~~l~I~~IfrV~r~~E~~rF~~~k~l~N~~LLwHGSr~~N~~gIL~qGLriappea~~tG~mF 591 (758)
++|++||.+| +++|.. ++|.+||+|+|.+++++|+.+++.+|+++|||||+.+||.+|+++||+++|+ +|+||
T Consensus 162 ~~I~~~f~~t-~~~~~~--~~I~~I~rV~n~~~~~rF~~~k~~~n~~~LfHGt~~~~~~~I~~~Gf~~~~~----~g~~f 234 (357)
T 3c4h_A 162 KVIQTYLEQT-GSNHRC--PTLQHIWKVNQEGEEDRFQAHSKLGNRKLLWHGTNMAVVAAILTSGLRIMPH----SGGRV 234 (357)
T ss_dssp HHHHHHHHHH-SCSSSC--CCEEEEEEEECTTSHHHHHTTTTCCCEEEEEEEECHHHHHHHHHHCSCCCTT----CCCTT
T ss_pred HHHHHHHHhc-CCCCCC--ccEEEEEEecCHHHHHHHHHHhccCCeEEEEeCCChhhHHHHHHcCCcccCC----CCCce
Confidence 9999999999 666753 8999999999999999999998899999999999999999999999998765 89999
Q ss_pred ccceEeccccccccccccCCCCCccchhhHHHHhcccccceeecccccccccccCcccCccccCCCCCceeEEEEEeecC
Q psy6813 592 GKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALG 671 (758)
Q Consensus 592 GkGIYFAD~~sKSa~Yc~~~~~~~~glLlL~eVAlGa~~~g~mfGkGiYFAd~~SkSa~Yc~~~~~~~~r~mLLceVALG 671 (758)
|+|||||+++++|++||.... ...++.|+||||+|+||
T Consensus 235 G~GiYfa~~~skS~~Y~~~~~------------------------------------------~~~~~~~~mllc~V~lG 272 (357)
T 3c4h_A 235 GKGIYFASENSKSAGYVIGMK------------------------------------------CGAHHVGYMFLGEVALG 272 (357)
T ss_dssp CSSEEEBSSHHHHHTTCCCEE------------------------------------------ETTEEEEEEEEEEEECC
T ss_pred ECCEecCCcchhhhhhcccCC------------------------------------------CCCCCeEEEEEEEEecC
Confidence 999999999999999997320 01234578999999999
Q ss_pred cceeeccccc-ccCCCCCCCccccCCCccCCCCCCeeec-CC--eEeeCCccccCCCCcCCCCCCCCcEEEEecCCceee
Q psy6813 672 KVVKKTQAEF-VTKLPNGFHSVQGQGRNCPDPKGSIVLD-NN--ITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKI 747 (758)
Q Consensus 672 ~~~e~~~a~~-~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~-dg--v~vP~G~~i~~p~~~~~~~~l~ynEyIVYd~~Qi~~ 747 (758)
++++++.+++ +..||+|||||+|+|++.|||++.+.+. || |+||+|++++.|. ..+++|.||||||||++||+|
T Consensus 273 ~~~~~~~~~~~~~~pP~g~dSv~g~g~~~P~~~~~~~~~~dg~~v~vp~G~~v~~~~--~~~~~l~~nEyVVYd~~Qv~p 350 (357)
T 3c4h_A 273 REHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQDTELELDGQQVVVPQGQPVPCPE--FSSSTFSQSEYLIYQESQCRL 350 (357)
T ss_dssp SEEEESSCCTTCSSCCTTCSEEEECCSEEECGGGCEEEEETTEEEEECCSCEEECGG--GTTCSCSBCEEEESSGGGEEE
T ss_pred CceeccCCchhccCCCCCCCccceecCCCCCcccceeeccCCCeEEecCCCcccCCC--CCCCccCCCEEEEEchhheeE
Confidence 9999888775 6789999999999999999999987775 99 9999999997652 356789999999999999999
Q ss_pred eeEEEEE
Q psy6813 748 RYILKVR 754 (758)
Q Consensus 748 rYLV~~~ 754 (758)
||||+|+
T Consensus 351 ~YLi~~k 357 (357)
T 3c4h_A 351 RYLLEVH 357 (357)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999985
No 5
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ...
Probab=100.00 E-value=2.9e-35 Score=304.92 Aligned_cols=191 Identities=27% Similarity=0.392 Sum_probs=152.5
Q ss_pred cCcEEEEcCCCChHHHHHHHHHHhcccCCCcC--------cccccceeEEeecchhhhcccccc--------ccCCeEEe
Q psy6813 497 LQANIKSVDTSHPHYEIIHKYVQNTHAKTHRE--------YSLNIEAIFEVSRHGEDKRFKPFE--------KLGNKHLL 560 (758)
Q Consensus 497 L~~~L~~Ld~~S~Ey~~I~ky~~nT~~~~h~~--------~~l~I~~IfrV~r~~E~~rF~~~k--------~l~N~~LL 560 (758)
.++.|++|+++|+||++|+++|.+|+.. |.. +.++|++|+||++..++++|+.++ ..+|+++|
T Consensus 29 ~~~~l~~L~~~s~Ey~~V~~~f~~T~~~-~~~~~~~~~~~~~~~I~~I~rIqn~~l~~~y~~~k~~m~~~~~~~~ne~~L 107 (240)
T 3u9h_A 29 SGTILIDLSPDDKEFQSVEEEMQSTVRE-HRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERML 107 (240)
T ss_dssp -CCEEEECCTTSHHHHHHHHHHHHTCCC-CTTTTTTTCSCSCEEEEEEEEEECHHHHHHHHHHHHHHHHTTTTCCCEEEE
T ss_pred CCeEEEECCCCCHHHHHHHHHHHhcccc-cccccccccccCCcEEEEEEEecCHhHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 4689999999999999999999999975 432 378999999999999999998764 36899999
Q ss_pred eccCCCcChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCCCCCccchhhHHHHhcccccceeecccccc
Q psy6813 561 WHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIY 640 (758)
Q Consensus 561 wHGSr~~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~glLlL~eVAlGa~~~g~mfGkGiY 640 (758)
||||+ ++.+|+++||+++.+ .+|+|||+|||||+++++|++||......+ |- |
T Consensus 108 fHGt~--~~~~I~~~Gf~~~~~---~~g~~~G~GiYfa~~~s~S~~y~~~~~~~~-~~----------~----------- 160 (240)
T 3u9h_A 108 FHGSP--FVNAIIHKGFDERHA---YIGGMFGAGIYFAENSSKSNQYVYGIGGGT-GC----------P----------- 160 (240)
T ss_dssp EECCT--THHHHHHHCCCGGGC---BTTSTTCSBEEEESSHHHHHTTTTSGGGTT-CC----------T-----------
T ss_pred EechH--hHHHHHHcCCCcccc---cCCCcceeeEEecCChhhhhhhhhcccccc-cc----------c-----------
Confidence 99997 577999999998643 468999999999999999999997642110 00 0
Q ss_pred cccccCcccCccccCCCCCceeEEEEEeecCcceeecccccccCCCCCCCccccCCCccCCCCCCeeecCCeEeeCCccc
Q psy6813 641 FADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLI 720 (758)
Q Consensus 641 FAd~~SkSa~Yc~~~~~~~~r~mLLceVALG~~~e~~~a~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~i 720 (758)
+..++ ...++.|+||||+|+||++.+...+..+..||+|||||+|..
T Consensus 161 -----~~~d~----~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~pP~gyDSvvg~~------------------------ 207 (240)
T 3u9h_A 161 -----VHKDR----SCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPPGHHSVTGRP------------------------ 207 (240)
T ss_dssp -----TTCCT----TCSSSCEEEEEEEEECCSEEEEEECC--CCCCTTCSEEEEEE------------------------
T ss_pred -----ccccc----ccccCceEEEEEEEecCceEeecCcccccCCCCCCCceecCC------------------------
Confidence 00000 001357899999999999999887777788999999999751
Q ss_pred cCCCCcCCCCCCCCcEEEEecCCceeeeeEEEEEE
Q psy6813 721 DLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRF 755 (758)
Q Consensus 721 ~~p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~~~ 755 (758)
...+|.|+||||||++||+|+|||+|++
T Consensus 208 -------~~~~l~~~E~VVy~~~qi~P~YlI~y~~ 235 (240)
T 3u9h_A 208 -------SVNGLALAEYVIYRGEQAYPEYLITYQI 235 (240)
T ss_dssp -------SSCTTCCCEEEESCGGGEEEEEEEEEEE
T ss_pred -------CCCCCCCCEEEEEcccceeEEEEEEEEc
Confidence 0125889999999999999999999986
No 6
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=292.86 Aligned_cols=166 Identities=19% Similarity=0.307 Sum_probs=140.8
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHHhcccCCCcCcccccceeEEeecchhhhccccccc--cCCeEEeeccCCCcChHHHh
Q psy6813 496 KLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEK--LGNKHLLWHGSRLTNFASII 573 (758)
Q Consensus 496 ~L~~~L~~Ld~~S~Ey~~I~ky~~nT~~~~h~~~~l~I~~IfrV~r~~E~~rF~~~k~--l~N~~LLwHGSr~~N~~gIL 573 (758)
.++|+|++|+++|+||++|+++|.+|++ .++|.+||+|++..++++|+.+++ ..|+++|||||+.+|+.+|+
T Consensus 2 ~~~~~l~~L~~~s~ey~~v~~~f~~t~~------~~~I~~I~rv~n~~~~~~f~~~k~~~~~n~~~l~HGt~~~~~~~I~ 75 (173)
T 2x5y_A 2 SKKYKLSEIHHLHPEYVRVSEHFKASMK------NFKIEKIKKIENSELLDKFTWKKSQMKEEGKLLFYATSRAYVESIC 75 (173)
T ss_dssp -CCCEEEECCTTSHHHHHHHHHHHTTCT------TEEEEEEEEEECHHHHHHHHHHHHHHTCCCEEEEEEEEGGGHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHhHCC------CCEEeEEEEECCHHHHHHHHHHHHHHhhCcEEEEecCCcccHHHHH
Confidence 4689999999999999999999999985 378999999999999999998765 57999999999999999999
Q ss_pred hcCCc--cCCCCCCccccccccceEeccccccccccccCCCCCccchhhHHHHhcccccceeecccccccccccCcccCc
Q psy6813 574 SKGLC--IAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANY 651 (758)
Q Consensus 574 ~qGLr--iappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~glLlL~eVAlGa~~~g~mfGkGiYFAd~~SkSa~Y 651 (758)
++||+ ++++ +|+|||+|||||+++++|++||....
T Consensus 76 ~~Gf~~~~~~~----~g~~~G~GiYfa~~~s~s~~Y~~~~~--------------------------------------- 112 (173)
T 2x5y_A 76 SNNFDSFLHET----HENKYGKGIYFAKDAIYSHKNCPYDA--------------------------------------- 112 (173)
T ss_dssp HHCCCHHHHCC----SCSSSCSSEEEESSHHHHHHHCCSCG---------------------------------------
T ss_pred HhCCCCcccCC----CcCCccCeEECCCChhhHhhcCCCCC---------------------------------------
Confidence 99994 4443 78899999999998888888886531
Q ss_pred cccCCCCCceeEEEEEeecCcceeecccccccCCCCCCCccccCCCccCCCCCCeeecCCeEeeCCccccCCCCcCCCCC
Q psy6813 652 CMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLS 731 (758)
Q Consensus 652 c~~~~~~~~r~mLLceVALG~~~e~~~a~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~i~~p~~~~~~~~ 731 (758)
+.|+||||+|++|+.... ...+..||+|||||.|..
T Consensus 113 -------~~~~m~lc~V~~G~~~~~--~~~~~~pp~~ydSv~~~~----------------------------------- 148 (173)
T 2x5y_A 113 -------KNVVMFVAQVLVGKFIEG--NITYTSPPPQFDSCVDTR----------------------------------- 148 (173)
T ss_dssp -------GGEEEEEEEECCCSEEEC--CTTCSSCCTTCCEEESCS-----------------------------------
T ss_pred -------CCeEEEEEEEecCccccC--CcccCCCCCCCCceECCC-----------------------------------
Confidence 136799999999995542 225778999999998651
Q ss_pred CCCcEEEEecCCceeeeeEEEEE
Q psy6813 732 LLYNEFIVYDPAQVKIRYILKVR 754 (758)
Q Consensus 732 l~ynEyIVYd~~Qi~~rYLV~~~ 754 (758)
.+++||||||++||+|+|||+|+
T Consensus 149 ~~~~e~VV~~~~q~~P~YlI~y~ 171 (173)
T 2x5y_A 149 SNPSVFVIFQKDQVYPQYVIEYT 171 (173)
T ss_dssp SSCCEEEECCGGGEEEEEEEEEE
T ss_pred CCCCEEEEEeCCeEeEEEEEEEe
Confidence 13479999999999999999987
No 7
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.6e-33 Score=281.75 Aligned_cols=169 Identities=19% Similarity=0.289 Sum_probs=134.7
Q ss_pred hcCcEEEEcCCCChHHHHHHHHHHhcccCCCcCcccccceeEEeecchhhhccccccc---------cCCeEEeeccCCC
Q psy6813 496 KLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEK---------LGNKHLLWHGSRL 566 (758)
Q Consensus 496 ~L~~~L~~Ld~~S~Ey~~I~ky~~nT~~~~h~~~~l~I~~IfrV~r~~E~~rF~~~k~---------l~N~~LLwHGSr~ 566 (758)
.+++.|++|+++|+||+.|+++|.+|++. ++|.+|+||++..++++|+.+++ ..|+++|||||+.
T Consensus 9 ~~~~~l~~L~~~s~Ey~~v~~~f~~t~~~------~~I~~I~rv~n~~l~~~f~~~k~~~~~~~~~~~~ne~~LfHGt~~ 82 (198)
T 2pqf_A 9 DPGFQKITLSSSSEEYQKVWNLFNRTLPF------YFVQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSA 82 (198)
T ss_dssp CCSCEEEECCTTSHHHHHHHHHHHTTCTT------SEEEEEEEEECHHHHHHHHHHHHHHHHTTTTCCCCEEEEEEECCG
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCC------CEEEEEEEeCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEecCCH
Confidence 46899999999999999999999999863 68999999999999999987542 3699999999999
Q ss_pred cChHHHhhcCCccCCCCCCccccccccceEeccccccccccccCCCCCccchhhHHHHhcccccceeecccccccccccC
Q psy6813 567 TNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVS 646 (758)
Q Consensus 567 ~N~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~glLlL~eVAlGa~~~g~mfGkGiYFAd~~S 646 (758)
+|+.+|+++||+++. ++.+|+|||+|||||+++++|++||....
T Consensus 83 ~~~~~I~~~Gf~~~~--~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~---------------------------------- 126 (198)
T 2pqf_A 83 IFVDAICQQNFDWRV--CGVHGTSYGKGSYFARDAAYSHHYSKSDT---------------------------------- 126 (198)
T ss_dssp GGHHHHHHHCCCTTT--TCCCSSCSCSSEEEESSHHHHHTTCCCSS----------------------------------
T ss_pred HHHHHHHHhCCCCcc--cCCCCCcccCeEECcCCcchhhhcccCCC----------------------------------
Confidence 999999999998643 34568888888888888888888876531
Q ss_pred cccCccccCCCCCceeEEEEEeecCcceeecccccccCCCCC-------CCccccCCCccCCCCCCeeecCCeEeeCCcc
Q psy6813 647 KSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNG-------FHSVQGQGRNCPDPKGSIVLDNNITVPLGTL 719 (758)
Q Consensus 647 kSa~Yc~~~~~~~~r~mLLceVALG~~~e~~~a~~~~~~p~G-------~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~ 719 (758)
+.|+||||+|+||++.. ...... .||++ ||||.+-
T Consensus 127 ------------~~~~m~lcrV~~G~~~~-~~~~~~-~pp~~~~~~~~~yDSvv~~------------------------ 168 (198)
T 2pqf_A 127 ------------QTHTMFLARVLVGEFVR-GNASFV-RPPAKEGWSNAFYDSCVNS------------------------ 168 (198)
T ss_dssp ------------SEEEEEEEEEECCSEEE-CCTTCS-SCCBCSCC--CBCSEEESC------------------------
T ss_pred ------------CceEEEEEEEecCCccc-CCcccc-CCCCCCCCCCCCcccCcCC------------------------
Confidence 35779999999999864 222233 34433 4444321
Q ss_pred ccCCCCcCCCCCCCCcEEEEecCCceeeeeEEEEEE
Q psy6813 720 IDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRF 755 (758)
Q Consensus 720 i~~p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~~~ 755 (758)
...++||||||.+||+|+|||+|+.
T Consensus 169 -----------~~~~~e~VVy~~~qiyP~YlI~y~~ 193 (198)
T 2pqf_A 169 -----------VSDPSIFVIFEKHQVYPEYVIQYTT 193 (198)
T ss_dssp -----------SSSCCEEEESCGGGEEEEEEEEEES
T ss_pred -----------CCCCCEEEEECCCcEeeEEEEEEEc
Confidence 1246899999999999999999974
No 8
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.98 E-value=7.4e-33 Score=259.73 Aligned_cols=104 Identities=27% Similarity=0.524 Sum_probs=97.2
Q ss_pred CceeEEEecCCcccCCCCCCCC--ceEEEEeCCcceeeeEEEeecccCCCceeEEEEEEeecCCCCeEEEEEeecccccc
Q psy6813 64 SGTVKLQIKDGLAVDPDSGLAD--TTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTS 141 (758)
Q Consensus 64 ~~~~k~~~k~~~~VD~~~~~~~--~~~Vy~~~~~~Y~~~~L~~tdi~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~~ 141 (758)
+++.++++||+++|||+|++.+ .+|||++ | +|+|++||+.+|+|+||+|||+++++ ++ |+|||+|||||+
T Consensus 2 ~~~~~~~~k~~~~VD~~~~~~~~~~~~V~~d----y-~~~L~~~d~~~n~nrfY~lQll~~~~-g~-~~v~~~WGRIG~- 73 (124)
T 2eoc_A 2 SSGSSGAEKRIIRVDPTCPLSSNPGTQVYED----Y-NCTLNQTNIENNNNKFYIIQLLQDSN-RF-FTCWNRWGRVGE- 73 (124)
T ss_dssp CSCCCCSCCCCCCCCSSSSTTTSTTCEEEEE----E-EEEEEEEETTTTEEEEEEEEEEECTT-SC-EEEEEECSCTTS-
T ss_pred CCcccceecCCcccCCCccccccCCcEEeEe----E-EEEEEeecCCCCceeEEEEEEEecCC-ce-EEEEEEECCCCC-
Confidence 3455677899999999999986 8999986 8 99999999999999999999999998 54 999999999997
Q ss_pred CCCcccccCCCHHHHHHHHHHHHHhHhCCCCccc
Q psy6813 142 IGGTKVQDFKDVESAFDEFDRCFEKETGNTSGKD 175 (758)
Q Consensus 142 ~G~~~~~~f~~~~~A~~~F~k~F~~KTgn~w~~r 175 (758)
.||+++++|+++++|+++|+++|++||||+|++|
T Consensus 74 ~Gq~~~~~~~s~~~A~~~F~k~f~~Ktgn~w~~r 107 (124)
T 2eoc_A 74 VGQSKINHFTRLEDAKKDFEKKFREKTKNNWAER 107 (124)
T ss_dssp CCCCEEEEESSHHHHHHHHHHHHHHHHSSCSTTG
T ss_pred CCceEeecCCCHHHHHHHHHHHHHHHHcCCcccc
Confidence 6999999999999999999999999999999998
No 9
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A*
Probab=99.98 E-value=1.7e-32 Score=281.32 Aligned_cols=169 Identities=22% Similarity=0.307 Sum_probs=132.5
Q ss_pred cCcEEEEcCCCChHHHHHHHHHHhcccCCCcCcccccceeEEeecchhhhccccccc--------cCCeEEeeccCCCcC
Q psy6813 497 LQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEK--------LGNKHLLWHGSRLTN 568 (758)
Q Consensus 497 L~~~L~~Ld~~S~Ey~~I~ky~~nT~~~~h~~~~l~I~~IfrV~r~~E~~rF~~~k~--------l~N~~LLwHGSr~~N 568 (758)
.+|.|++|+++++||+.|+++|.+|++. ++|.+|+||++..++++|+.+++ .+|+++|||||+.+|
T Consensus 35 ~~~~l~~L~~~s~ey~~V~~~f~~t~~~------~~I~~I~rV~n~~l~~~f~~~k~~~~~k~~~~~ne~lLfHGt~~~~ 108 (221)
T 3blj_A 35 QLFCMVQLEPGQSEYNTIKDKFTRTCSS------YAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKNNERLLFHGTDADS 108 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHHHTT------SEEEEEEEEEEHHHHHHHHHHHHHHHHHSSSCCCEEEEEEEECGGG
T ss_pred CCEEEEECCCCCHHHHHHHHHHHhhCCC------CEEEEEEEEcChhHHHHHHHHHHHHHHhcCCCCceEEEeccCChHH
Confidence 5689999999999999999999999863 68999999999999999987642 589999999999999
Q ss_pred hHHHhhcCCccCCCCCCccccccccceEeccccccccc--cccCCCCCccchhhHHHHhcccccceeecccccccccccC
Q psy6813 569 FASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSAN--YCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVS 646 (758)
Q Consensus 569 ~~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~--Yc~~~~~~~~glLlL~eVAlGa~~~g~mfGkGiYFAd~~S 646 (758)
+.+|+++||+. +.++.+|+|||+|||||+++++|++ ||...
T Consensus 109 ~~~I~~~Gf~~--~~a~~~g~~~G~GiYfa~~~s~S~~~~Y~~~~----------------------------------- 151 (221)
T 3blj_A 109 VPYVNQHGFNR--SCAGKNAVSYGKGTYFAVDASYSAKDTYSKPD----------------------------------- 151 (221)
T ss_dssp HHHHHHHCCCT--TTC-----CCCSSEEEESSHHHHHSTTTSCCC-----------------------------------
T ss_pred HHHHHHhCCCC--cccCCCCCccCCeEECCcchhhhcCcccccCC-----------------------------------
Confidence 99999999995 4566678899999999988888887 55432
Q ss_pred cccCccccCCCCCceeEEEEEeecCcceeecccccccCCC-------CCCCccccCCCccCCCCCCeeecCCeEeeCCcc
Q psy6813 647 KSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLP-------NGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTL 719 (758)
Q Consensus 647 kSa~Yc~~~~~~~~r~mLLceVALG~~~e~~~a~~~~~~p-------~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~ 719 (758)
.++.|+||||+|++|++... ......+|| .+||||.|.
T Consensus 152 ----------~~g~~~mllcrV~~G~~~~g-~~~~~~pp~~~~~~~~~~yDSvv~~------------------------ 196 (221)
T 3blj_A 152 ----------SNGRKHMYVVRVLTGVFTKG-RAGLVTPPPKNPHNPTDLFDSVTNN------------------------ 196 (221)
T ss_dssp ----------TTSCEEEEEEEEECCSEEEC-CTTCSSCCBSSTTSTTSBCSEEESC------------------------
T ss_pred ----------CCCcEEEEEEEEEeCCccCC-ChhccCCCcccCCCCCCCCCccccC------------------------
Confidence 13457899999999997642 222222222 367776643
Q ss_pred ccCCCCcCCCCCCCCcEEEEecCCceeeeeEEEEE
Q psy6813 720 IDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVR 754 (758)
Q Consensus 720 i~~p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~~ 754 (758)
..+++||||||++||+|+|||+|+
T Consensus 197 -----------~~~~~e~VVy~~~qiyP~YlI~y~ 220 (221)
T 3blj_A 197 -----------TRSPKLFVVFFDNQAYPEYLITFT 220 (221)
T ss_dssp -----------SSSCSEEEECSTTSEEEEEEEEEE
T ss_pred -----------CCCCCEEEEEcCCeEeeeEEEEEE
Confidence 124689999999999999999986
No 10
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens}
Probab=99.97 E-value=4.3e-32 Score=277.13 Aligned_cols=174 Identities=14% Similarity=0.239 Sum_probs=138.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHhcccCCCcCcccccceeEEeecchhhhcccccc--------ccCCeEEeeccCCCcCh
Q psy6813 498 QANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFE--------KLGNKHLLWHGSRLTNF 569 (758)
Q Consensus 498 ~~~L~~Ld~~S~Ey~~I~ky~~nT~~~~h~~~~l~I~~IfrV~r~~E~~rF~~~k--------~l~N~~LLwHGSr~~N~ 569 (758)
-|+|++|+++|+||+.|+++|.+|++.+|. .+.|..|+||++..++++|+.++ ...|+++|||||+.+|+
T Consensus 10 ~~~L~~L~~~s~Ey~~V~~~F~~t~~~~~~--~~~I~~I~RIqn~~l~~~f~~~k~~m~~k~~~~~ne~~LfHGt~~~~~ 87 (217)
T 3hkv_A 10 WNNLERLAENTGEFQEVVRAFYDTLDAARS--SIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTAPAV 87 (217)
T ss_dssp CCCEEECCSSSHHHHHHHHHHHHTTGGGGG--TEEEEEEEEECCHHHHHHHHHHHHHHHHHCCSSCSEEEEEEEECGGGH
T ss_pred cccceECCCCChHHHHHHHHHHhhcCCcCC--CceEEEEEEECChhHHHHHHHHHHHHHHhcCCCCceEEEEeCCCHHHH
Confidence 389999999999999999999999976553 47899999999999999998764 25799999999999999
Q ss_pred HHHhhcCCccCCCCCCccccccccceEecccccccc--ccccCCCCCccchhhHHHHhcccccceeecccccccccccCc
Q psy6813 570 ASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSA--NYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSK 647 (758)
Q Consensus 570 ~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa--~Yc~~~~~~~~glLlL~eVAlGa~~~g~mfGkGiYFAd~~Sk 647 (758)
.+|+++||+.+. ++.+|+|||+|||||+++++|+ +||...
T Consensus 88 ~~I~~~GF~~~~--~g~~g~~~G~GiYFA~~~s~S~~~~Y~~~~------------------------------------ 129 (217)
T 3hkv_A 88 PDICAHGFNRSF--CGRNATVYGKGVYFAKRASLSVQDRYSPPN------------------------------------ 129 (217)
T ss_dssp HHHHHHCSCTTT--SCCCCCTTCSSEEEESSHHHHTSTTTSCCC------------------------------------
T ss_pred HHHHhcCCcccc--cCcchhccccceeccCCccccccccccccc------------------------------------
Confidence 999999997542 3346888888888888888886 466432
Q ss_pred ccCccccCCCCCceeEEEEEeecCcceeecccccccCCC-------CCCCccccCCCccCCCCCCeeecCCeEeeCCccc
Q psy6813 648 SANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLP-------NGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLI 720 (758)
Q Consensus 648 Sa~Yc~~~~~~~~r~mLLceVALG~~~e~~~a~~~~~~p-------~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~i 720 (758)
.++.++||||+|+||++..- ...+..+|| .+||||.+.
T Consensus 130 ---------~~g~~~m~lcrVl~G~~~~g-~~~~~~PP~~~~~~~~~~yDSvvd~------------------------- 174 (217)
T 3hkv_A 130 ---------ADGHKAVFVARVLTGDYGQG-RRGLRAPPLRGPGHVLLRYDSAMDC------------------------- 174 (217)
T ss_dssp ---------TTSEEEEEEEEEECCSEEEC-CTTCSSSCBCCTTCSSSBCSEEESC-------------------------
T ss_pred ---------CCCceEEEEEEEEccccccC-CCccCCCCCCccCCCCCceeEEECC-------------------------
Confidence 13467899999999996542 222333333 258888753
Q ss_pred cCCCCcCCCCCCCCcEEEEecCCceeeeeEEEEEEE
Q psy6813 721 DLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFN 756 (758)
Q Consensus 721 ~~p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~~~~ 756 (758)
..+++|||||+.+||+|.|||+|+-.
T Consensus 175 ----------~~np~~~VVf~~~qiyPeYLI~y~~~ 200 (217)
T 3hkv_A 175 ----------ICQPSIFVIFHDTQALPTHLITCEHV 200 (217)
T ss_dssp ----------SSSCCEEEECCTTSEEEEEEEEEEEC
T ss_pred ----------CCCCCEEEEEcCCcCceeEEEEEecC
Confidence 12458999999999999999999853
No 11
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A*
Probab=99.97 E-value=7.8e-32 Score=271.03 Aligned_cols=170 Identities=18% Similarity=0.247 Sum_probs=134.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHhcccCCCcCcccccceeEEeecchhhhcccccc--------ccCCeEEeeccCCCcCh
Q psy6813 498 QANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFE--------KLGNKHLLWHGSRLTNF 569 (758)
Q Consensus 498 ~~~L~~Ld~~S~Ey~~I~ky~~nT~~~~h~~~~l~I~~IfrV~r~~E~~rF~~~k--------~l~N~~LLwHGSr~~N~ 569 (758)
+|.|++|+++|+||+.|+++|.+|++ .++|.+|+||++..++++|+.++ ..+|+++|||||+.+|+
T Consensus 8 ~~~l~~L~~~s~Ey~~V~~~f~~t~~------~~~I~~I~rI~n~~l~~~f~~~k~~~~~k~~~~~ne~~L~HGt~~~~~ 81 (193)
T 3smj_A 8 NFCVVELLPSDPEYNTVASKFNQTCS------HFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDAGSV 81 (193)
T ss_dssp CEEEEECCTTSTTHHHHHHHHHHHHT------TSEEEEEEEEECHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEECGGGH
T ss_pred CEEEEECCCCChHHHHHHHHHHhhCC------CCeEEEEEEECCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCHHHH
Confidence 57899999999999999999999984 26899999999999999998764 25799999999999999
Q ss_pred HHHhhcCCccCCCCCCccccccccceEeccccccccccccCCCCCccchhhHHHHhcccccceeecccccccccccCccc
Q psy6813 570 ASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSA 649 (758)
Q Consensus 570 ~gIL~qGLriappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~~~~~~glLlL~eVAlGa~~~g~mfGkGiYFAd~~SkSa 649 (758)
.+|+++||+.+. ++.+|+|||+|||||+.+++|++||...
T Consensus 82 ~~I~~~Gf~~~~--~~~~~~~~G~GiYfa~~~s~S~~~~y~~-------------------------------------- 121 (193)
T 3smj_A 82 PHVNRNGFNRSY--AGKNAVAYGKGTYFAVNANYSANDTYSR-------------------------------------- 121 (193)
T ss_dssp HHHHHHTTCCCC--TTGGGSSSCCCEEEESSHHHHTSTTTSC--------------------------------------
T ss_pred HHHHHcCCCCcc--CCCCccccCCeEEecCCcchhcCccccC--------------------------------------
Confidence 999999998542 3446888888888888888888854322
Q ss_pred CccccCCCCCceeEEEEEeecCcceeecccccccCCC-------CCCCccccCCCccCCCCCCeeecCCeEeeCCccccC
Q psy6813 650 NYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLP-------NGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDL 722 (758)
Q Consensus 650 ~Yc~~~~~~~~r~mLLceVALG~~~e~~~a~~~~~~p-------~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~i~~ 722 (758)
+ ..++.++||||+|++|+...- ......+|| .+||||.|.-
T Consensus 122 ----~-~~~g~~~mllcrV~~G~~~~g-~~~~~~pP~~~~~~~~~~yDSvv~~~-------------------------- 169 (193)
T 3smj_A 122 ----P-DANGRKHVYYVRVLTGIYTHG-NHSLIVPPSKNPQNPTDLYDTVTDNV-------------------------- 169 (193)
T ss_dssp ----C-CTTSCEEEEEEEEECCSEEEC-CSSCCSCCBSCTTSTTCBCSEEESCS--------------------------
T ss_pred ----C-CCCCcEEEEEEEEEecccccC-CCccCCCCCccCCCCCCCccceeCCC--------------------------
Confidence 1 124568899999999997642 223333332 2588887541
Q ss_pred CCCcCCCCCCCCcEEEEecCCceeeeeEEEEE
Q psy6813 723 PRDQAKNLSLLYNEFIVYDPAQVKIRYILKVR 754 (758)
Q Consensus 723 p~~~~~~~~l~ynEyIVYd~~Qi~~rYLV~~~ 754 (758)
-+++|||||+.+||+|.|||+|+
T Consensus 170 ---------~~p~~~VVf~~~qiyP~YlI~y~ 192 (193)
T 3smj_A 170 ---------HHPSLFVAFYDYQAYPEYLITFR 192 (193)
T ss_dssp ---------SSCSEEEECSTTCEEEEEEEEEE
T ss_pred ---------CCCCEEEEEeCCceeeEEEEEEe
Confidence 13479999999999999999986
No 12
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens}
Probab=99.76 E-value=8.7e-19 Score=183.77 Aligned_cols=101 Identities=27% Similarity=0.403 Sum_probs=83.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcccCCCcCcccccceeEEee-cchhhhccccccccCCeEEeeccCCCcChHHHhhcCCc
Q psy6813 500 NIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVS-RHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLC 578 (758)
Q Consensus 500 ~L~~Ld~~S~Ey~~I~ky~~nT~~~~h~~~~l~I~~IfrV~-r~~E~~rF~~~k~l~N~~LLwHGSr~~N~~gIL~qGLr 578 (758)
.|..|++ .||+.|.+++...+.+ ......||+|. +.+++++|+++++..|++++||||+.+||.+||++||+
T Consensus 94 ~l~~l~k--~ef~~l~~~~g~~~~p-----~~~P~~If~V~~~~~~~~~f~~~~~~~~~~~~~HGS~l~n~~sIL~~GL~ 166 (277)
T 4f0d_A 94 TIHSAGK--AEFEKIQKLTGAPHTP-----VPAPDFLFEIEYFDPANAKFYETKGERDLIYAFHGSRLENFHSIIHNGLH 166 (277)
T ss_dssp EEEECCS--HHHHHHHHHTCSCSSC-----CCCCSEEEEEEECTTHHHHHHHHHTTSCEEEEEEECCGGGHHHHHHHCSC
T ss_pred ceEecCH--HHHHHHHHHhCCCCCC-----CCCCceeEEEecCcchhhHHHHhhccCCcEEEEcCCcHHHHHHHHhcccc
Confidence 4555544 4788888877654432 24567999999 77788999999999999999999999999999999999
Q ss_pred cCCCCCCccccccccceEeccccccccccccCC
Q psy6813 579 IAPPEAPVTGYMFGKGIYFADSVSKSANYCMTN 611 (758)
Q Consensus 579 iappea~~tG~mFGkGIYFAD~~sKSa~Yc~~~ 611 (758)
++| .+|+|||+|||||+++++|++||...
T Consensus 167 ~~~----~~g~~fG~GiY~a~~~~~S~~ys~~~ 195 (277)
T 4f0d_A 167 CHL----NKTSLFGEGTYLTSDLSLALIYSPHG 195 (277)
T ss_dssp CC------CCCSSSCCEEEBSCHHHHHTTCCCE
T ss_pred cCc----ccccccCCceEeecchHHHhhhccCC
Confidence 975 48999999999999999999999753
No 13
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.23 E-value=2.9e-12 Score=118.03 Aligned_cols=45 Identities=40% Similarity=0.629 Sum_probs=41.8
Q ss_pred CCCCCCcceeecccccccccccccccccCceeeeeeecccccchh
Q psy6813 2 SKHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINARIGE 46 (758)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (758)
+..++||.|||||||||+||+|+++|.||+|||+++|+++.|||.
T Consensus 5 ~~~~~~y~vEYAKS~RA~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~ 49 (114)
T 1v9x_A 5 SSGHKPWRAEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHFDGI 49 (114)
T ss_dssp CSCCCSEEEEECSCSCCBCSSSCCBCCSSSEEEEECCCCSSSSCC
T ss_pred CCCCcceEEEEeCCCCCCchhhCCccCCCCEEEEEEecCcccCCC
Confidence 457899999999999999999999999999999999999888763
No 14
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=99.20 E-value=5.5e-12 Score=116.22 Aligned_cols=45 Identities=40% Similarity=0.673 Sum_probs=41.2
Q ss_pred CCCCCCcceeecccccccccccccccccCceeeeeeecccccchh
Q psy6813 2 SKHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINARIGE 46 (758)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (758)
.+.+++|.|||||||||+||+|+++|.||+|||+++|+++.|+|.
T Consensus 23 ~~~~~~y~vEyAkS~RA~Ck~C~~kI~KgeLRiG~~v~~~~~~G~ 67 (116)
T 3od8_A 23 ESSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGK 67 (116)
T ss_dssp --CCCSEEEEECSSSCCBCTTTCCBCCTTSEEEEEEEECSSSSSE
T ss_pred hccCCCEEEEEeccCCccCcccCCccCCCCEEEEEEeccCCcCCC
Confidence 356799999999999999999999999999999999999999884
No 15
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=99.19 E-value=6.1e-12 Score=114.65 Aligned_cols=46 Identities=41% Similarity=0.696 Sum_probs=42.0
Q ss_pred CC-CCCCCcceeecccccccccccccccccCceeeeeeecccccchh
Q psy6813 1 MS-KHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINARIGE 46 (758)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (758)
|+ ..+++|.|||||||||+||+|+++|.||+|||+++|+++.|+|.
T Consensus 8 m~~~~~~~~~vEyAkS~Ra~Ck~C~~kI~KgelRig~~v~~~~~~g~ 54 (106)
T 2dmj_A 8 MAESSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGK 54 (106)
T ss_dssp CCCSCCCSEECEECCSSCCBCSSSCCBCCTTCEEEEEEEEETTTTEE
T ss_pred cccCCCCeEEEEEeCCCCCcchhhCCccCCCCEEEEEEecCCCCCCC
Confidence 44 36899999999999999999999999999999999999888763
No 16
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=99.10 E-value=2.4e-11 Score=112.54 Aligned_cols=39 Identities=36% Similarity=0.630 Sum_probs=37.3
Q ss_pred CCCcceeecccccccccccccccccCceeeeeeeccccc
Q psy6813 5 AKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINAR 43 (758)
Q Consensus 5 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 43 (758)
+.+|.|||||||||+|++|+++|.||+|||+++|+++.|
T Consensus 3 ~~~y~vEYAkSgRA~Ck~C~~kI~KgeLRiG~~v~~~~~ 41 (117)
T 1uw0_A 3 EQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFS 41 (117)
T ss_dssp CCEEEEEECCSSCEECTTSSCEECTTCEEEEEEEECTTC
T ss_pred CCceEEEEeCCCCccchhhCcccCCCCeEEEEEeccccc
Confidence 579999999999999999999999999999999999776
No 17
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=99.06 E-value=4.2e-11 Score=122.34 Aligned_cols=45 Identities=42% Similarity=0.691 Sum_probs=40.4
Q ss_pred CCCCCCcceeecccccccccccccccccCceeeeeeecccccchh
Q psy6813 2 SKHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINARIGE 46 (758)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (758)
++.|+||.|||||||||+||+|+++|.+|+|||+++|++++|||.
T Consensus 24 ~~~d~~y~vEyAkS~RA~Ck~Ck~kI~Kg~LRig~~v~~~~~dG~ 68 (223)
T 4av1_A 24 SHSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGK 68 (223)
T ss_dssp ---CCSEEEEECSSTTCBCTTTCCBCCTTCEEEEEEEEETTTTEE
T ss_pred cCCCCcEEEEEecCCCccCcccCCccCCCceEEEEEecCCCCCCC
Confidence 467999999999999999999999999999999999999988873
No 18
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=98.95 E-value=2.5e-10 Score=104.72 Aligned_cols=40 Identities=40% Similarity=0.691 Sum_probs=36.9
Q ss_pred CCCCCcceeecccccccccccccccccCceeeeeeecccc
Q psy6813 3 KHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINA 42 (758)
Q Consensus 3 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 42 (758)
....+|.|||||||||+||+|+++|.||+|||+++|+++.
T Consensus 5 ~~~~~y~vEyAkS~Ra~Ck~C~~kI~Kg~lRig~~~~~~~ 44 (111)
T 3odc_A 5 KTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPE 44 (111)
T ss_dssp -CCCCEEEEECSSSCCBCTTTCCBCCTTCEEEEEEEEETT
T ss_pred ccCCcceEEEeecCCccccccCCCccCCceEEeEEecCcc
Confidence 4678999999999999999999999999999999998875
No 19
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=6.2e-10 Score=105.31 Aligned_cols=37 Identities=41% Similarity=0.721 Sum_probs=34.9
Q ss_pred CCCcceeecccccccccccccccccCceeeeeeeccc
Q psy6813 5 AKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQIN 41 (758)
Q Consensus 5 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 41 (758)
..+|.|||||||||+|++|+++|.||+|||+++|+.+
T Consensus 15 ~~~y~vEYAKSgRA~CK~C~~kI~KgeLRIG~~v~~~ 51 (134)
T 2cs2_A 15 LGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDP 51 (134)
T ss_dssp EEEEEEEECSSSCCBCSSSCCBCCTTSEEEEEEEECS
T ss_pred cCceEEEEeCCCCccchhcCCcccCCCeEEEEEeccc
Confidence 4789999999999999999999999999999999874
No 20
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=98.54 E-value=8.7e-09 Score=105.30 Aligned_cols=39 Identities=38% Similarity=0.681 Sum_probs=0.0
Q ss_pred CCCCcceeecccccccccccccccccCceeeeeeecccc
Q psy6813 4 HAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINA 42 (758)
Q Consensus 4 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 42 (758)
....|.|||||||||+||+|+++|.||+|||+++|+++.
T Consensus 130 ~~~~y~vEYAKS~Ra~Ck~C~~kI~KgeLRig~~v~~~~ 168 (223)
T 4av1_A 130 TLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPE 168 (223)
T ss_dssp ---------------------------------------
T ss_pred cccceEEEEeccCCccccccCCccCCCCeEEeeeecCcc
Confidence 345899999999999999999999999999999998864
No 21
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*
Probab=98.29 E-value=2.4e-07 Score=100.83 Aligned_cols=75 Identities=40% Similarity=0.767 Sum_probs=66.4
Q ss_pred hhhhhhhhhhhHHHHHHHhhccccccchhhhhhcCCCcceeccccCCCCCCCCCCchHHHHHHHHHHHHHHHhhhhcccc
Q psy6813 263 SAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKY 342 (758)
Q Consensus 263 s~~~~~~~y~il~~~~~~~~~~~~~~~~~~~i~~~~~kyy~~i~~~~g~~~~~~~~~~~~v~~k~e~l~~~~~~~~e~~y 342 (758)
|+.||++||+||.++..+++.+. ....+.+..|+||..|||+||+..||++++.+.|.+|++|||++.+ ||+.+
T Consensus 41 s~~qi~~~~~vL~~i~~~l~~~~----~~~~l~~ls~~fyt~IPh~fg~~~p~~i~~~~~l~~k~~lle~L~d--ie~A~ 114 (350)
T 1efy_A 41 SKRQIQSAYSILNEVQQAVSDGG----SESQILDLSNRFYTLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLLD--IEVAY 114 (350)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHSCBCCCSSCCCCSCSHHHHHHHHHHHHHHHH--HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccc----chHHHHHHHHhHHhhcCccccCCCCCccCCHHHHHHHHHHHHHHHH--HHHHH
Confidence 68999999999999999997542 3456788999999999999999999999999999999999999988 66655
Q ss_pred c
Q psy6813 343 E 343 (758)
Q Consensus 343 ~ 343 (758)
.
T Consensus 115 ~ 115 (350)
T 1efy_A 115 S 115 (350)
T ss_dssp H
T ss_pred H
Confidence 4
No 22
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A
Probab=98.26 E-value=2.9e-07 Score=100.52 Aligned_cols=75 Identities=25% Similarity=0.648 Sum_probs=65.6
Q ss_pred hhhhhhhhhhhHHHHHHHhhccccccchhhhhhcCCCcceeccccCCCCCCCCCCchHHHHHHHHHHHHHHHhhhhcccc
Q psy6813 263 SAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKY 342 (758)
Q Consensus 263 s~~~~~~~y~il~~~~~~~~~~~~~~~~~~~i~~~~~kyy~~i~~~~g~~~~~~~~~~~~v~~k~e~l~~~~~~~~e~~y 342 (758)
|+.||++||+||.+++.+++++. ....+.+.+|+||..|||+||+..||+++|.+.|.+|++||+.+.+ ||+.+
T Consensus 60 Sk~qI~~g~~vL~~i~~~l~~~~----~~~~l~~lsn~fYtlIPh~fg~~~pp~I~~~~~l~~k~~lle~L~d--ieiA~ 133 (368)
T 3kjd_A 60 TVAQIKAGYQSLKKIEDCIRAGQ----HGRALMEACNEFYTRIPHDFGLRTPPLIRTQKELSEKIQLLEALGD--IEIAI 133 (368)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTC----CSHHHHHHHHHHHHHSCBCCTTSCCCCCCSHHHHHHHHHHHHHHHH--HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccc----chHHHHHHHhhhhhhCCccccCCCCCccCCHHHHHHHHHHHHHHHH--HHHHH
Confidence 67899999999999999997532 2335778899999999999999999999999999999999999988 66655
Q ss_pred c
Q psy6813 343 E 343 (758)
Q Consensus 343 ~ 343 (758)
.
T Consensus 134 ~ 134 (368)
T 3kjd_A 134 K 134 (368)
T ss_dssp H
T ss_pred H
Confidence 4
No 23
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A*
Probab=98.26 E-value=2.8e-07 Score=100.65 Aligned_cols=76 Identities=25% Similarity=0.552 Sum_probs=65.3
Q ss_pred hhhhhhhhhhhHHHHHHHhhccccccchhhhhhcCCCcceeccccCCCCCCCCCCchHHHHHHHHHHHHHHHhhhhcccc
Q psy6813 263 SAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKY 342 (758)
Q Consensus 263 s~~~~~~~y~il~~~~~~~~~~~~~~~~~~~i~~~~~kyy~~i~~~~g~~~~~~~~~~~~v~~k~e~l~~~~~~~~e~~y 342 (758)
|+.||++||+||.++..++++... ....+.+..|+||..|||+||+..||++++.+.|.+|++|||.+.+ ||+.+
T Consensus 47 s~~qi~~g~~vL~~i~~~l~~~~~---~~~~~~~ls~~fyt~IPh~fg~~~p~~i~~~~~l~~k~~lle~l~d--i~~a~ 121 (357)
T 3c4h_A 47 SKQQIARGFEALEALEEALKGPTD---GGQSLEELSSHFYTVIPHNFGHSQPPPINSPELLQAKKDMLLVLAD--IELAQ 121 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSCCC---SCCCHHHHHHHHHHHSCBCSTTSCCCCCCSHHHHHHHHHHHHHHHH--HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHhhcCcccCCCCCCccCCHHHHHHHHHHHHHHHH--HHHHH
Confidence 688999999999999999975322 1223778899999999999999999999999999999999999988 66655
Q ss_pred c
Q psy6813 343 E 343 (758)
Q Consensus 343 ~ 343 (758)
.
T Consensus 122 ~ 122 (357)
T 3c4h_A 122 A 122 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 24
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A
Probab=98.13 E-value=8e-07 Score=100.88 Aligned_cols=75 Identities=43% Similarity=0.764 Sum_probs=66.0
Q ss_pred hhhhhhhhhhhHHHHHHHhhccccccchhhhhhcCCCcceeccccCCCCCCCCCCchHHHHHHHHHHHHHHHhhhhcccc
Q psy6813 263 SAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKY 342 (758)
Q Consensus 263 s~~~~~~~y~il~~~~~~~~~~~~~~~~~~~i~~~~~kyy~~i~~~~g~~~~~~~~~~~~v~~k~e~l~~~~~~~~e~~y 342 (758)
|+.||++||+||.++..+|+.. .....+.+.+|+||..|||+||+..||++++.+.|.++++||+++.+ ||+.+
T Consensus 186 S~~qI~~g~~vL~~i~~~l~~~----~~~~~l~~lsn~fYtlIPh~fg~~~pp~i~~~~~l~~k~~ll~~L~d--ieiA~ 259 (506)
T 4dqy_C 186 SKRQIQAAYSILSEVQQAVSQG----SSDSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAKAEMLDNLLD--IEVAY 259 (506)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHSCBCCTTSCCCCCCSHHHHHHHHHHHHHHHH--HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcc----ccHHHHHHHHhhhhEeCCccccCCCCCccCCHHHHHHHHHHHHHHHH--HHHHH
Confidence 6899999999999999999753 22345778999999999999999999999999999999999999988 77665
Q ss_pred c
Q psy6813 343 E 343 (758)
Q Consensus 343 ~ 343 (758)
.
T Consensus 260 ~ 260 (506)
T 4dqy_C 260 S 260 (506)
T ss_dssp H
T ss_pred H
Confidence 4
No 25
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.05 E-value=2.6e-06 Score=93.02 Aligned_cols=61 Identities=18% Similarity=0.277 Sum_probs=55.9
Q ss_pred ccCCCceeEEEEEEeecCCCCeEEEEEeeccccccCCCcccccCCCHHHHHHHHHHHHHhHhCCCCccc
Q psy6813 107 VAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGNTSGKD 175 (758)
Q Consensus 107 i~~n~nkfY~iQll~~~~~~~~y~v~~~WGRVG~~~G~~~~~~f~~~~~A~~~F~k~F~~KTgn~w~~r 175 (758)
...|++|||.|.+. .+.|-++|||||+ .||.++..|.+.++|.++|+|+-.+|++++|...
T Consensus 8 ~~~~~~kf~~~~~~-------~~~~~~~~GriG~-~g~~~~~~f~~~~~a~~~~~~l~~~k~~kGy~~~ 68 (362)
T 2ra8_A 8 QDFKSQKFWSIDVR-------GTDVIVNYGKLGT-DGQTQVKNFSSAGEAEKAAGKLIAEKTKKGYVET 68 (362)
T ss_dssp ESSSCEEEEEEEEE-------TTEEEEEEEETTS-CCEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred ccCCcCceEEEEEe-------ccEEEEEECCCCC-CceEEeeeCCCHHHHHHHHHHHHHHHHhcCCccc
Confidence 45689999999997 2479999999997 7999999999999999999999999999999886
No 26
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=98.02 E-value=2.4e-06 Score=78.54 Aligned_cols=78 Identities=29% Similarity=0.481 Sum_probs=64.5
Q ss_pred hHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccchhhhhhhch--hHHHHHHhhcc
Q psy6813 178 QKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFIKDAANG--KVLELIEKMNL 255 (758)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~~~~ 255 (758)
+++++.|+.+||.+++.|+.++.+-|++ ++++++ ..++++|+++||+||+++|..++... .+.++|.++++
T Consensus 27 ~e~k~~ie~~Ggkv~~sVskkT~~lV~g-~~~e~~------gsKl~kA~~lgI~IvsE~~l~~~~~~~~~~~~~i~k~~i 99 (113)
T 2cok_A 27 DEVKAMIEKLGGKLTGTANKASLCISTK-KEVEKM------NKKMEEVKEANIRVVSEDFLQDVSASTKSLQELFLAHIL 99 (113)
T ss_dssp HHHHHHHHHTTCEEESCSTTCSEEECCH-HHHHHC------CHHHHHHHHTTCCEECTHHHHHHHSCCSCHHHHHHHTBC
T ss_pred HHHHHHHHHCCCEEcCccccCccEEEEC-CCCCCC------ChHHHHHHHCCCcEEeHHHHHHHHhhchhHHHHHHHhcC
Confidence 5778889999999999998887654455 555543 35799999999999999998887765 68999999999
Q ss_pred CCCCCCc
Q psy6813 256 APWGSDD 262 (758)
Q Consensus 256 ~~w~~~~ 262 (758)
.||+.+-
T Consensus 100 ~~w~~~~ 106 (113)
T 2cok_A 100 SSWGAEV 106 (113)
T ss_dssp SSCCCSC
T ss_pred CCCCCCc
Confidence 9999864
No 27
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens}
Probab=96.59 E-value=0.00029 Score=70.60 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=22.2
Q ss_pred cceeecccccccccccCcccCccc
Q psy6813 630 VLRYMFGKGIYFADSVSKSANYCM 653 (758)
Q Consensus 630 ~~g~mfGkGiYFAd~~SkSa~Yc~ 653 (758)
..|+|||+|||||+++|||++||.
T Consensus 100 ~~g~~~G~GiYfa~~~s~S~~Y~~ 123 (198)
T 2pqf_A 100 VHGTSYGKGSYFARDAAYSHHYSK 123 (198)
T ss_dssp CCSSCSCSSEEEESSHHHHHTTCC
T ss_pred CCCCcccCeEECcCCcchhhhccc
Confidence 468999999999999999999995
No 28
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens}
Probab=95.87 E-value=0.00078 Score=66.06 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=21.7
Q ss_pred ceeecccccccccccCcccCccc
Q psy6813 631 LRYMFGKGIYFADSVSKSANYCM 653 (758)
Q Consensus 631 ~g~mfGkGiYFAd~~SkSa~Yc~ 653 (758)
.|+|||+|||||+++++|++||.
T Consensus 87 ~g~~~G~GiYfa~~~s~s~~Y~~ 109 (173)
T 2x5y_A 87 HENKYGKGIYFAKDAIYSHKNCP 109 (173)
T ss_dssp SCSSSCSSEEEESSHHHHHHHCC
T ss_pred CcCCccCeEECCCChhhHhhcCC
Confidence 68999999999999999999994
No 29
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A*
Probab=95.34 E-value=0.0014 Score=66.86 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=17.9
Q ss_pred cccceeecccccccccccCcccCcc
Q psy6813 628 KVVLRYMFGKGIYFADSVSKSANYC 652 (758)
Q Consensus 628 a~~~g~mfGkGiYFAd~~SkSa~Yc 652 (758)
++..++|||+|||||+++|||++|+
T Consensus 122 a~~~g~~~G~GiYfa~~~s~S~~~~ 146 (221)
T 3blj_A 122 AGKNAVSYGKGTYFAVDASYSAKDT 146 (221)
T ss_dssp C-----CCCSSEEEESSHHHHHSTT
T ss_pred cCCCCCccCCeEECCcchhhhcCcc
Confidence 3456899999999999999999843
No 30
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ...
Probab=95.31 E-value=0.0023 Score=66.16 Aligned_cols=26 Identities=46% Similarity=0.722 Sum_probs=23.5
Q ss_pred cceeecccccccccccCcccCccccC
Q psy6813 630 VLRYMFGKGIYFADSVSKSANYCMTN 655 (758)
Q Consensus 630 ~~g~mfGkGiYFAd~~SkSa~Yc~~~ 655 (758)
..|+|||+|||||++++||++||.+.
T Consensus 128 ~~g~~~G~GiYfa~~~s~S~~y~~~~ 153 (240)
T 3u9h_A 128 YIGGMFGAGIYFAENSSKSNQYVYGI 153 (240)
T ss_dssp BTTSTTCSBEEEESSHHHHHTTTTSG
T ss_pred cCCCcceeeEEecCChhhhhhhhhcc
Confidence 46899999999999999999999753
No 31
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens}
Probab=95.09 E-value=0.0035 Score=65.84 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=43.3
Q ss_pred cccCCCCCccchhhHH-HHhcccccceeecccccccccccCcccCccccCC------CC-CceeEEEEEeecCcc
Q psy6813 607 YCMTNSTNNVGLLLLC-EVALGKVVLRYMFGKGIYFADSVSKSANYCMTNS------TN-NVGLLLLCEVALGKV 673 (758)
Q Consensus 607 Yc~~~~~~~~glLlL~-eVAlGa~~~g~mfGkGiYFAd~~SkSa~Yc~~~~------~~-~~r~mLLceVALG~~ 673 (758)
|+++...+-.++|-.+ .++ +.+|+|||+|||||++.++|++||.+.. .+ ..++|.||||+....
T Consensus 149 ~HGS~l~n~~sIL~~GL~~~---~~~g~~fG~GiY~a~~~~~S~~ys~~~~~W~~S~~g~~~~~valcEvv~~p~ 220 (277)
T 4f0d_A 149 FHGSRLENFHSIIHNGLHCH---LNKTSLFGEGTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPD 220 (277)
T ss_dssp EEECCGGGHHHHHHHCSCCC-----CCCSSSCCEEEBSCHHHHHTTCCCEECCTTCTTCSEEEEEEEEEEECCCC
T ss_pred EcCCcHHHHHHHHhcccccC---cccccccCCceEeecchHHHhhhccCCCCcCcccccccceEEEEEEEecCCc
Confidence 4444433333443332 333 3678999999999999999999997643 12 269999999997543
No 32
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A*
Probab=95.07 E-value=0.0034 Score=62.68 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=20.5
Q ss_pred ceeecccccccccccCcccCcc
Q psy6813 631 LRYMFGKGIYFADSVSKSANYC 652 (758)
Q Consensus 631 ~g~mfGkGiYFAd~~SkSa~Yc 652 (758)
.++|||+|||||+++|||++||
T Consensus 97 ~~~~~G~GiYfa~~~s~S~~~~ 118 (193)
T 3smj_A 97 NAVAYGKGTYFAVNANYSANDT 118 (193)
T ss_dssp GGSSSCCCEEEESSHHHHTSTT
T ss_pred CccccCCeEEecCCcchhcCcc
Confidence 5799999999999999999987
No 33
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens}
Probab=94.47 E-value=0.0057 Score=62.26 Aligned_cols=22 Identities=41% Similarity=0.741 Sum_probs=19.4
Q ss_pred ceeecccccccccccCccc--Ccc
Q psy6813 631 LRYMFGKGIYFADSVSKSA--NYC 652 (758)
Q Consensus 631 ~g~mfGkGiYFAd~~SkSa--~Yc 652 (758)
.|+|||+|||||+++|||+ .||
T Consensus 103 ~g~~~G~GiYFA~~~s~S~~~~Y~ 126 (217)
T 3hkv_A 103 NATVYGKGVYFAKRASLSVQDRYS 126 (217)
T ss_dssp CCCTTCSSEEEESSHHHHTSTTTS
T ss_pred chhccccceeccCCcccccccccc
Confidence 4799999999999999997 465
No 34
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=89.03 E-value=0.077 Score=48.19 Aligned_cols=53 Identities=13% Similarity=0.327 Sum_probs=40.1
Q ss_pred hHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccch-hhh
Q psy6813 178 QKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSK-FIK 239 (758)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~ 239 (758)
++++..|+.+||.+++.|+.++..-|+.. .-|..++++|+++||+|++++ |.+
T Consensus 50 ~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~---------~~g~sK~~kA~~lgI~Ii~E~~f~~ 103 (109)
T 2k6g_A 50 DEAKSLIERYGGKVTGNVSKKTNYLVMGR---------DSGQSKSDKAAALGTKIIDEDGLLN 103 (109)
T ss_dssp HHHHHHHHHTTCEEESSCCTTCCEEEECB---------CCCHHHHHHHHHHTCEEECHHHHHH
T ss_pred HHHHHHHHHcCCEeeCcccCCceEEEECC---------CCChHHHHHHHHcCCeEEeHHHHHH
Confidence 56788899999999888888765433331 124468999999999999976 544
No 35
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.40 E-value=0.1 Score=47.62 Aligned_cols=53 Identities=13% Similarity=0.324 Sum_probs=40.1
Q ss_pred hHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccch-hhh
Q psy6813 178 QKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSK-FIK 239 (758)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~ 239 (758)
+++++.|+.+||.+++.|+.++..-|+... -|..++++|+++||+|++++ |.+
T Consensus 40 ~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~---------~g~sKl~KA~~lgI~IisE~~f~~ 93 (112)
T 2ebu_A 40 DEAKSLIERYGGKVTGNVSKKTNYLVMGRD---------SGQSKSDKAAALGTKIIDEDGLLN 93 (112)
T ss_dssp HHHHHHHHHTTCEECSSCCSSCCEEEECSS---------CCSHHHHHHHHHTCEEEEHHHHHH
T ss_pred HHHHHHHHHcCCEEeccccCCeeEEEecCC---------CChHHHHHHHHcCCeEEeHHHHHH
Confidence 567888999999998888887654333321 24468999999999999976 544
No 36
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=86.64 E-value=0.082 Score=46.55 Aligned_cols=52 Identities=15% Similarity=0.371 Sum_probs=40.3
Q ss_pred hHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccch-hhh
Q psy6813 178 QKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSK-FIK 239 (758)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~ 239 (758)
++++..|+.+||.+.+.|+.++..-|+... .| .++++|+++||+|++++ |.+
T Consensus 24 ~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~---------~g-sK~~kA~~lgI~Ii~E~~f~~ 76 (92)
T 1l7b_A 24 EEVKALLRRLGAKVTDSVSRKTSYLVVGEN---------PG-SKLEKARALGVPTLTEEELYR 76 (92)
T ss_dssp HHHHHHHHHTTCEEESCCSSSCCCBEECSS---------SS-TTHHHHHCSSSCCEEHHHHHH
T ss_pred HHHHHHHHHcCCEEeCcccCCeeEEEeCCC---------CC-hHHHHHHHcCCcEEeHHHHHH
Confidence 578889999999998888877654344421 23 67999999999999987 766
No 37
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.59 E-value=0.63 Score=42.96 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=39.2
Q ss_pred hhHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccchhhh
Q psy6813 177 KQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFIK 239 (758)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 239 (758)
.+.+++.|..+||+++..++.+++-.|++. .+..+++.|.+.||+||..+++.
T Consensus 38 r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~----------~~~~K~~~A~~~gi~IV~~~Wl~ 90 (129)
T 2d8m_A 38 RSELRDKALELGAKYRPDWTRDSTHLICAF----------ANTPKYSQVLGLGGRIVRKEWVL 90 (129)
T ss_dssp HHHHHHHHHHTTEEEESSCCTTCCEEEESS----------SSCHHHHHHHHHTCEEEETHHHH
T ss_pred HHHHHHHHHHcCCEEeCCcCCCCeEEEecC----------CCChHHHHHHHCCCcEecHHHHH
Confidence 367999999999999888776654433331 12356788899999999988654
No 38
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=70.83 E-value=1.3 Score=39.17 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=40.8
Q ss_pred hHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccchhhh
Q psy6813 178 QKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFIK 239 (758)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 239 (758)
..+++.|..+||.+.+.++..++--|++. ..+++..++..|++.||+||..+++.
T Consensus 32 ~~l~~li~~~Gg~v~~~~s~~~THlI~~~-------~~~~~~~K~~~A~~~gi~IV~~~Wl~ 86 (107)
T 3l3e_A 32 SELNGIAASLGADYRRSFDETVTHFIYQG-------RPNDTNREYKSVKERGVHIVSEHWLL 86 (107)
T ss_dssp HHHHHHHHHTTCEEESSCCTTCCEEECCC-------CTTCCCHHHHHHHHTTCEEECHHHHH
T ss_pred HHHHHHHHHcCCEEeccccCCceEEEecC-------CCCCCCHHHHHHHHCCCeEecHHHHH
Confidence 57899999999999888877665434431 11233467888999999999988665
No 39
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=68.73 E-value=1 Score=52.80 Aligned_cols=52 Identities=19% Similarity=0.411 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccch-hhh
Q psy6813 178 QKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSK-FIK 239 (758)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~ 239 (758)
++++..|+.+||++++.|++++..-|+...+ | .|+++|+++||+|++++ |.+
T Consensus 604 ~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~---------g-sKl~KA~~lgI~Ii~E~~f~~ 656 (667)
T 1dgs_A 604 EEVKALLGRLGAKVTDSVSRKTSYLVVGENP---------G-SKLEKARALGVAVLTEEEFWR 656 (667)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHcCCEEcCcccCCeeEEEECCCC---------C-hHHHHHHHCCCeEEeHHHHHH
Confidence 5677789999999999999888765555322 3 57899999999999976 776
No 40
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=56.86 E-value=2.3 Score=49.92 Aligned_cols=52 Identities=25% Similarity=0.459 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCCccccccchhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccch-hhh
Q psy6813 178 QKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSK-FIK 239 (758)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~ 239 (758)
+++++.|+.+||++++.|++++..-|+...+ | .|+++|+++||+|++++ |.+
T Consensus 615 ~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~---------g-sKl~KA~~lgI~Ii~E~~f~~ 667 (671)
T 2owo_A 615 DDAKARLVELGAKVAGSVSKKTDLVIAGEAA---------G-SKLAKAQELGIEVIDEAEMLR 667 (671)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHcCCEEeCcccCceeEEEECCCC---------C-hHHHHHHHCCCcEEcHHHHHH
Confidence 5667789999999999999888765555322 2 57899999999999976 544
No 41
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=40.82 E-value=10 Score=37.47 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.7
Q ss_pred EEeeccCCCcChHHHhhcCCcc
Q psy6813 558 HLLWHGSRLTNFASIISKGLCI 579 (758)
Q Consensus 558 ~LLwHGSr~~N~~gIL~qGLri 579 (758)
..|+|||...+|.+|+.+||+-
T Consensus 92 ~~lyHGT~~~~~~~I~~~GL~~ 113 (186)
T 1wfx_A 92 PILYHGTTEEALPLIMERGIMR 113 (186)
T ss_dssp SEEEECCBGGGHHHHHHHCBCC
T ss_pred CEEEEeCCHHHHHHHHHhCCCC
Confidence 3699999999999999999863
No 42
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=27.36 E-value=16 Score=38.39 Aligned_cols=53 Identities=13% Similarity=0.352 Sum_probs=37.4
Q ss_pred hhHHHHHHHhcCCccccccc-hhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccchhhh
Q psy6813 177 KQKLTASILRLGGDTVSDVR-SHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFIK 239 (758)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 239 (758)
.+.++..|+.+||++++.++ ..++--|++. .++.+.+.|++.||+||...++.
T Consensus 215 r~~l~~li~~~GG~~~~~ls~~~~THLI~~~----------~~g~K~~~A~~~gi~IV~~~Wl~ 268 (298)
T 3olc_X 215 RKEVQQLTVKHGGQYMGQLKMNECTHLIVQE----------PKGQKYECAKRWNVHCVTTQWFF 268 (298)
T ss_dssp HHHHHHHHHHTTCEECSSCCTTTCCEEECSS----------SCSHHHHHHHHTTCEEECHHHHH
T ss_pred HHHHHHHHHHcCCEEeceecCCCceEEEEeC----------CCchHHHHHHHCCCeEEeHHHHH
Confidence 36799999999999988887 4432222221 12356888999999999987553
No 43
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=20.68 E-value=22 Score=29.68 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=31.2
Q ss_pred hHHHHHHHhcCCccccccc--hhhHHHHhhHHHHhhhhccCCchhhhHHHHhhccccccchhhh
Q psy6813 178 QKLTASILRLGGDTVSDVR--SHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFIK 239 (758)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 239 (758)
+.+++.|..+||+++..++ ..++-.|++... + .+.. +..|++||...++.
T Consensus 24 ~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~---------~-~K~~--~~~~~~iV~~~Wi~ 75 (92)
T 4id3_A 24 LQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLP---------L-KKRI--EFANYKVVSPDWIV 75 (92)
T ss_dssp HHHHHHHHHTTCEEESSCCCTTTCCEEECSCCC---------H-HHHH--HTTTSCEECTHHHH
T ss_pred HHHHHHHHHCCCEEEEEecCCCceEEEEecCCC---------H-HHHH--HcCCCCEEcccHHH
Confidence 5688999999999988776 444322332211 1 1112 22689999988654
Done!