RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6813
(758 letters)
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor
complex, catalytic fragment, S genomics, structural
genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens}
PDB: 3kcz_A* 1gs0_A
Length = 368
Score = 333 bits (855), Expect = e-108
Identities = 140/418 (33%), Positives = 212/418 (50%), Gaps = 50/418 (11%)
Query: 340 VKYEDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLS 399
+ + S S++ V L++L+ + +AM + E + + + PLGKL+
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMDLRVQELIKLICNVQAMEEMMMEMKYNTKKAPLGKLT 60
Query: 400 AKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLV 459
+ GY L ++ + R ++ N FYT IPH FGL PPL+ ++ +
Sbjct: 61 VAQIKAGYQSLKKIEDCIRAGQ----HGRALMEACNEFYTRIPHDFGLRTPPLIRTQKEL 116
Query: 460 VQKMEMIDAMTQIELAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQ 519
+K+++++A+ IE+A + + + HPL Y L ++ +D +++I +Y+Q
Sbjct: 117 SEKIQLLEALGDIEIAIKLVKTELQSPEHPLDQHYRNLHCALRPLDHESYEFKVISQYLQ 176
Query: 520 NTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCI 579
+THA TH +Y++ + +FEV + GE + F+ L N+ LLWHGSR++N+ I+S GL I
Sbjct: 177 STHAPTHSDYTMTLLDLFEVEKDGEKEAFRE--DLHNRMLLWHGSRMSNWVGILSHGLRI 234
Query: 580 APPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGI 639
A PEAP+TGYMFGKGIYFAD SKSANYC + N GLLLL EVALG+
Sbjct: 235 AHPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELL------ 288
Query: 640 YFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNC 699
AN L G HS +G G+
Sbjct: 289 --------EANPKA-----------------------------EGLLQGKHSTKGLGKMA 311
Query: 700 PDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNY 757
P + L+ TVPLG D +L YNE+IVY+P QV++RY+LKV+FN+
Sbjct: 312 PSSAHFVTLN-GSTVPLGPASDTGILNPDGYTLNYNEYIVYNPNQVRMRYLLKVQFNF 368
Score = 57.5 bits (138), Expect = 6e-09
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 263 SAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQL 322
+ + GY L ++ + R ++ N FYT IPH FGL PPL+ ++
Sbjct: 60 TVAQIKAGYQSLKKIEDCIRAGQ----HGRALMEACNEFYTRIPHDFGLRTPPLIRTQKE 115
Query: 323 VVQKMEMIDAMTQKLLDVKYEDTSKSKKVKVEPMD 357
+ +K+++++A+ +++ + + P+D
Sbjct: 116 LSEKIQLLEALGD--IEIAIKLVKTELQSPEHPLD 148
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic
fragment, transferase; HET: BZC; 2.20A {Gallus gallus}
SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A
2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A*
2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*
Length = 350
Score = 332 bits (851), Expect = e-108
Identities = 176/401 (43%), Positives = 238/401 (59%), Gaps = 53/401 (13%)
Query: 359 ECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLD 418
+ L KP+ L++++FD ++M + E+E+D+ +MPLGKLS + + YSILNEV +
Sbjct: 1 KSKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVS 60
Query: 419 RNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTI 478
+ IL L+N FYT IPH FG+ PPLL N + + K++M+D + IE+AY++
Sbjct: 61 DGG----SESQILDLSNRFYTLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLLDIEVAYSL 116
Query: 479 KQEGPSAG-VHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIF 537
+ G G P+ YEKL+ +IK VD +II +YV+NTHA TH Y L + IF
Sbjct: 117 LRGGNEDGDKDPIDINYEKLRTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIF 176
Query: 538 EVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYF 597
+ R GE +R+KPF++L N+ LLWHGSR TNFA I+S+GL IAPPEAPVTGYMFG
Sbjct: 177 RIEREGESQRYKPFKQLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFG----- 231
Query: 598 ADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNST 657
KGIYFAD VSKSANYC T+
Sbjct: 232 ---------------------------------------KGIYFADMVSKSANYCHTSQA 252
Query: 658 NNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLG 717
+ +GL+LL EVALG + + A +TKLP G HSV+G G+ PDP + LD + VPLG
Sbjct: 253 DPIGLILLGEVALGNMYELKNASHITKLPKGKHSVKGLGKTAPDPTATTTLD-GVEVPLG 311
Query: 718 TLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRFNYK 758
I + LLYNE+IVYD AQV ++Y+LK++FNYK
Sbjct: 312 NGIS---TGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYK 349
Score = 59.7 bits (144), Expect = 1e-09
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 263 SAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQL 322
S + + YSILNEV + + IL L+N FYT IPH FG+ PPLL N +
Sbjct: 41 SKRQIQSAYSILNEVQQAVSDGG----SESQILDLSNRFYTLIPHDFGMKKPPLLSNLEY 96
Query: 323 VVQKMEMIDAM-----TQKLLDVKYEDTSK 347
+ K++M+D + LL ED K
Sbjct: 97 IQAKVQMLDNLLDIEVAYSLLRGGNEDGDK 126
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase,
DNA binding protein, ADP- transferase, PARP-like zinc
finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo
sapiens} PDB: 2cr9_A
Length = 506
Score = 324 bits (831), Expect = e-103
Identities = 184/423 (43%), Positives = 249/423 (58%), Gaps = 53/423 (12%)
Query: 337 LLDVKYEDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLG 396
L++ Y ++ K + L KPV L++++FD ++M + EYE+D+ +MPLG
Sbjct: 124 PLEIDYGQDEEAVKKLTVNPGTKSKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLG 183
Query: 397 KLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNK 456
KLS + + YSIL+EV + + + D IL L+N FYT IPH FG+ PPLL+N
Sbjct: 184 KLSKRQIQAAYSILSEVQQAVSQGS----SDSQILDLSNRFYTLIPHDFGMKKPPLLNNA 239
Query: 457 QLVVQKMEMIDAMTQIELAYTI-KQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIH 515
V K EM+D + IE+AY++ + + P+ YEKL+ +IK VD EII
Sbjct: 240 DSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIR 299
Query: 516 KYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISK 575
KYV+NTHA TH Y L + IF++ R GE +R+KPF++L N+ LLWHGSR TNFA I+S+
Sbjct: 300 KYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQ 359
Query: 576 GLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMF 635
GL IAPPEAPVTGYMFG
Sbjct: 360 GLRIAPPEAPVTGYMFG------------------------------------------- 376
Query: 636 GKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQ 695
KGIYFAD VSKSANYC T+ + +GL+LL EVALG + + A ++KLP G HSV+G
Sbjct: 377 -KGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGL 435
Query: 696 GRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKVRF 755
G+ PDP +I LD + VPLGT I + SLLYNE+IVYD AQV ++Y+LK++F
Sbjct: 436 GKTTPDPSANISLD-GVDVPLGTGIS---SGVNDTSLLYNEYIVYDIAQVNLKYLLKLKF 491
Query: 756 NYK 758
N+K
Sbjct: 492 NFK 494
Score = 131 bits (330), Expect = 1e-32
Identities = 80/272 (29%), Positives = 130/272 (47%), Gaps = 21/272 (7%)
Query: 62 SKSGTVKLQIKDGLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLK 121
+KL +K G AVDPDSGL + +++ + +A +G D+ G NS+YKLQ+L+
Sbjct: 2 KSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVF-SATLGLVDIVKGTNSYYKLQLLE 60
Query: 122 SKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGNTSGKDAKQKLT 181
+ +Y++FR+WGR+GT IG K++ E A + F + +E++TGN K
Sbjct: 61 DD-KENRYWIFRSWGRVGTVIGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWHSKNFTKYP 119
Query: 182 ASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFIKDA 241
L D D + +++ +L + ++ F ++
Sbjct: 120 KKFYPLEIDYGQDEEA--------------VKKLTVNPGTKSKLPKPVQDLIKMIFDVES 165
Query: 242 ANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSF 301
++E + P G S + + YSIL+EV + + + D IL L+N F
Sbjct: 166 MKKAMVEYEIDLQKMPLGK-LSKRQIQAAYSILSEVQQAVSQGS----SDSQILDLSNRF 220
Query: 302 YTHIPHSFGLADPPLLDNKQLVVQKMEMIDAM 333
YT IPH FG+ PPLL+N V K EM+D +
Sbjct: 221 YTLIPHDFGMKKPPLLNNADSVQAKAEMLDNL 252
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic
fragment, structural GEN structural genomics consortium,
SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A*
3ce0_A* 3fhb_A*
Length = 357
Score = 288 bits (738), Expect = 5e-91
Identities = 111/406 (27%), Positives = 188/406 (46%), Gaps = 63/406 (15%)
Query: 357 DIECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISV 416
CSL+ L+ +F ++ T+ +LD+ +MPLGKLS + +A+G+ L +
Sbjct: 5 VQPCSLDPATQKLITNIFSKEMFKNTMALMDLDVKKMPLGKLSKQQIARGFEALEALEEA 64
Query: 417 LDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAY 476
L + + L++ FYT IPH+FG + PP +++ +L+ K +M+ + IELA
Sbjct: 65 LKGPTDGGQS---LEELSSHFYTVIPHNFGHSQPPPINSPELLQAKKDMLLVLADIELAQ 121
Query: 477 TIKQEG-----PSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSL 531
++ HPL Y+ L+ ++ +D+ P Y++I Y++ T +
Sbjct: 122 ALQAVSEQEKTVEEVPHPLDRDYQLLKCQLQLLDSGAPEYKVIQTYLEQTGSNHRCPTLQ 181
Query: 532 NIEAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMF 591
+ I++V++ GE+ RF+ KLGN+ LLWHG+ + A+I++ GL I P G
Sbjct: 182 H---IWKVNQEGEEDRFQAHSKLGNRKLLWHGTNMAVVAAILTSGLRIMPHS----GGRV 234
Query: 592 GKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANY 651
GKGIYFA SKSA Y +
Sbjct: 235 GKGIYFASENSKSAGYVIGMKCGA------------------------------------ 258
Query: 652 CMTNSTNNVGLLLLCEVALGKVVKKTQAE-FVTKLPNGFHSVQGQGRNCPDPKGSIVLDN 710
++VG + L EVALG+ + P GF SV +G PDP L+
Sbjct: 259 ------HHVGYMFLGEVALGREHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQDTELEL 312
Query: 711 N---ITVPLGTLIDLPRDQAKNLSLLYNEFIVYDPAQVKIRYILKV 753
+ + VP G + P + + + +E+++Y +Q ++RY+L+V
Sbjct: 313 DGQQVVVPQGQPV--PCPEFSSSTFSQSEYLIYQESQCRLRYLLEV 356
Score = 58.6 bits (141), Expect = 3e-09
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 263 SAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQL 322
S + +A+G+ L + L + + L++ FYT IPH+FG + PP +++ +L
Sbjct: 47 SKQQIARGFEALEALEEALKGPTDGGQS---LEELSSHFYTVIPHNFGHSQPPPINSPEL 103
Query: 323 VVQKMEMIDAM-----TQKLLDVKYEDTSKSK 349
+ K +M+ + Q L V ++ + +
Sbjct: 104 LQAKKDMLLVLADIELAQALQAVSEQEKTVEE 135
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15,
structural genomics structural genomics consortium, SGC;
HET: 3AB; 2.70A {Homo sapiens}
Length = 277
Score = 131 bits (331), Expect = 2e-34
Identities = 42/318 (13%), Positives = 83/318 (26%), Gaps = 88/318 (27%)
Query: 436 SFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTIKQEGPSAGVHPLVNCYE 495
S P S+ D ++ +++ + Q
Sbjct: 36 SVLRPFPASYARGDCK---------DFEALLADASKLPNLKELLQSSGDNHKRAWDLVSW 86
Query: 496 KLQANIKS-VDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEV-SRHGEDKRFKPFEK 553
L + + + +E I K H + +FE+ + +F +
Sbjct: 87 ILSSKVLTIHSAGKAEFEKIQKLTGAPHTPVPA-----PDFLFEIEYFDPANAKFYETKG 141
Query: 554 LGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNST 613
+ +HGSRL NF SII GL +FG+G Y +S + Y
Sbjct: 142 ERDLIYAFHGSRLENFHSIIHNGLH----CHLNKTSLFGEGTYLTSDLSLALIYSPHGHG 197
Query: 614 NNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKV 673
LL + + +CEV
Sbjct: 198 WQHSLL-------------------------------------GPILSCVAVCEVI---- 216
Query: 674 VKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLL 733
P+ + + D + + + + +
Sbjct: 217 ----------DHPDVKCQTKKKDSKEIDRRRARIKHSE-----------------GGDIP 249
Query: 734 YNEFIVYDPAQVKIRYIL 751
F+V + ++++Y+L
Sbjct: 250 PKYFVVTNNQLLRVKYLL 267
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold,
transfer ribosylation; HET: SO4; 1.75A {Homo sapiens}
PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A*
3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A*
3uh2_A* 3uh4_A* 4dvi_A*
Length = 240
Score = 120 bits (301), Expect = 9e-31
Identities = 49/266 (18%), Positives = 79/266 (29%), Gaps = 82/266 (30%)
Query: 504 VDTSHPHYEIIHKYVQNT----HAKTHREYSLNIEAIFEVSRHGEDKRFKPFE------- 552
+ ++ + + +Q+T H N I ++ + K ++ +
Sbjct: 36 LSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVS 95
Query: 553 ----KLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYC 608
N+ +L+HGS N +II KG G MFG GIYFA++ SKS Y
Sbjct: 96 EENHNHANERMLFHGSPFVN--AIIHKGF---DERHAYIGGMFGAGIYFAENSSKSNQYV 150
Query: 609 MTNSTNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEV 668
+ + LL C V
Sbjct: 151 YGIGGGTGCPVHKDR-------------------------------SCYICHRQLLFCRV 179
Query: 669 ALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAK 728
LGK + A + P G HSV G P +
Sbjct: 180 TLGKSFLQFSAMKMAHSPPGHHSVTG------RPSVN----------------------- 210
Query: 729 NLSLLYNEFIVYDPAQVKIRYILKVR 754
L E+++Y Q Y++ +
Sbjct: 211 --GLALAEYVIYRGEQAYPEYLITYQ 234
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE
consortium, glycosyltransferase, NAD, nucleus; 2.20A
{Homo sapiens} PDB: 3gey_A*
Length = 221
Score = 98.6 bits (245), Expect = 2e-23
Identities = 37/253 (14%), Positives = 59/253 (23%), Gaps = 78/253 (30%)
Query: 501 IKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRF--KPFEKLGNKH 558
+ ++ Y I T + E I+ F + KR + N+
Sbjct: 39 MVQLEPGQSEYNTIKDKFTRTCSSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKNNER 98
Query: 559 LLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNS-TNNVG 617
LL+HG+ + + G A +GKG YFA S SA + +N
Sbjct: 99 LLFHGTDADSVPYVNQHGFN--RSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRK 156
Query: 618 LLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKT 677
+ + V G A N
Sbjct: 157 HMYVVRVLTGVFTK---------------GRAGLVTPPPKNP------------------ 183
Query: 678 QAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEF 737
+ F SV R+ F
Sbjct: 184 -----HNPTDLFDSVTNNTRS-----------------------------------PKLF 203
Query: 738 IVYDPAQVKIRYI 750
+V+ Q Y+
Sbjct: 204 VVFFDNQAYPEYL 216
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex,
catalytic fragment, structural GEN structural genomics
consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo
sapiens}
Length = 198
Score = 97.4 bits (242), Expect = 2e-23
Identities = 31/260 (11%), Positives = 72/260 (27%), Gaps = 85/260 (32%)
Query: 504 VDTSHPHYEIIHKYVQNTHAKTHREYSLNIE-----AIFEVSRHGEDKRFKPFEKLGNKH 558
+ +S Y+ + T + ++ +++ + K+ K ++
Sbjct: 17 LSSSSEEYQKVWNLFNRTLPFYFVQKIERVQNLALWEVYQWQKGQMQKQNGG--KAVDER 74
Query: 559 LLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGL 618
L+HG+ +I + C + T
Sbjct: 75 QLFHGTSAIFVDAICQQNF--------------------------DWRVCGVHGT----- 103
Query: 619 LLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKKTQ 678
+GKG YFA + S +Y S + L V +G+ V+
Sbjct: 104 ---------------SYGKGSYFARDAAYSHHYS--KSDTQTHTMFLARVLVGEFVRGNA 146
Query: 679 AEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNEFI 738
+ G+ + D +++ + F+
Sbjct: 147 SFVRPPAKEGWSNAFY------DS----CVNS--------------------VSDPSIFV 176
Query: 739 VYDPAQVKIRYILKVRFNYK 758
+++ QV Y+++ + K
Sbjct: 177 IFEKHQVYPEYVIQYTTSSK 196
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold,
transferase, NAD+, ADP-ribosylat transferase-transferase
inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB:
3goy_A* 3smi_A* 3se2_A*
Length = 193
Score = 96.6 bits (240), Expect = 4e-23
Identities = 32/259 (12%), Positives = 60/259 (23%), Gaps = 90/259 (34%)
Query: 501 IKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEK------- 553
+ + S P Y + T + IE I + ++ +K
Sbjct: 11 VVELLPSDPEYNTVASKFNQTCSHFR------IEKIERIQNPDLWNSYQAKKKTMDAKNG 64
Query: 554 -LGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCM-TN 611
N+ L+HG+ + + G A +GKG YFA + + SAN
Sbjct: 65 QTMNEKQLFHGTDAGSVPHVNRNGF--NRSYAGKNAVAYGKGTYFAVNANYSANDTYSRP 122
Query: 612 STNNVGLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALG 671
N + V G Y N +
Sbjct: 123 DANGRKHVYYVRVLTG----------------------IYTHGNHSL------------- 147
Query: 672 KVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLS 731
++ + + +V +
Sbjct: 148 ---IVPPSKNPQNPTDLYDTVTDNVHH--------------------------------- 171
Query: 732 LLYNEFIVYDPAQVKIRYI 750
+ F+ + Q Y+
Sbjct: 172 --PSLFVAFYDYQAYPEYL 188
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase,
structural genomics, structural genomics consortium,
SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A
{Homo sapiens}
Length = 217
Score = 96.3 bits (239), Expect = 1e-22
Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 13/140 (9%)
Query: 500 NIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPF-------- 551
N++ + + ++ + + +T + + VS ++++ +
Sbjct: 12 NLERLAENTGEFQEVVRAFYDTLDAARSSI--RVVRVERVSHPLLQQQYELYRERLLQRC 69
Query: 552 EKLGNKHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCM-T 610
E+ + +L+HG+ I + G ++GKG+YFA S S
Sbjct: 70 ERRPVEQVLYHGTTAPAVPDICAHGFNR--SFCGRNATVYGKGVYFAKRASLSVQDRYSP 127
Query: 611 NSTNNVGLLLLCEVALGKVV 630
+ + + + V G
Sbjct: 128 PNADGHKAVFVARVLTGDYG 147
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense,
immune system, transferase; 1.05A {Homo sapiens}
Length = 173
Score = 83.9 bits (207), Expect = 7e-19
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 12/132 (9%)
Query: 501 IKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKL--GNKH 558
+ + HP Y + ++ + + + IE I ++ +F +
Sbjct: 7 LSEIHHLHPEYVRVSEHFKASMK------NFKIEKIKKIENSELLDKFTWKKSQMKEEGK 60
Query: 559 LLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNVGL 618
LL++ + SI S +GKGIYFA S C + +
Sbjct: 61 LLFYATSRAYVESICSNNF--DSFLHETHENKYGKGIYFAKDAIYSHKNCPYD--AKNVV 116
Query: 619 LLLCEVALGKVV 630
+ + +V +GK +
Sbjct: 117 MFVAQVLVGKFI 128
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell
cycle control, DNA damage, transcription, NAD+,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 80.9 bits (199), Expect = 2e-18
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 61 KSKSGTVKLQIKDGLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVL 120
S S + K + VDP L+ Y D N + +T++ N FY +Q+L
Sbjct: 2 SSGSSGAE---KRIIRVDPTCPLSSNPGTQVYED---YNCTLNQTNIENNNNKFYIIQLL 55
Query: 121 KSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGN 170
+ + + WGR+G +G +K+ F +E A +F++ F ++T N
Sbjct: 56 QDS--NRFFTCWNRWGRVGE-VGQSKINHFTRLEDAKKDFEKKFREKTKN 102
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 82.0 bits (202), Expect = 4e-16
Identities = 116/675 (17%), Positives = 202/675 (29%), Gaps = 240/675 (35%)
Query: 26 TIIQGTLRLAVMV----QINARIGEAKDVKLKSQEKSVFKSKSGTVKLQIKDGLAVD--P 79
T+ G+L ++V A SQ + F +G A D P
Sbjct: 10 TLSHGSLEHVLLVPTASFFIA-----------SQLQEQFNKILPEPT----EGFAADDEP 54
Query: 80 DSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYYLFRAWGRIG 139
+ ELV ++L V + K + QVL
Sbjct: 55 TT----PAELVG----KFLGYVSSLVE--PSKVGQFD-QVLNL----------------- 86
Query: 140 TSIGGTKVQDFKDVESAFDEFDRCFEKETGNTSGKDAKQKLTASILRLGGDTVSD----V 195
EF+ C+ G D L A +L+ T+ +
Sbjct: 87 ----------------CLTEFENCY------LEGNDI-HALAAKLLQENDTTLVKTKELI 123
Query: 196 RSHVAAAIATKAAVENMEE------------------GGKGARA--MEELKE----YGIH 231
++++ A I K + GG+G EEL++ Y +
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 232 VVPSKFIKDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKD 291
V IK +A + ELI + D+ K QG +IL L+ N
Sbjct: 184 VGD--LIKFSAE-TLSELIR-------TTLDAEKVFTQGLNIL----EWLE-NPSN---- 224
Query: 292 RLILTLTNSFYTHIPHSFGLADPPLLDNKQLV---VQKMEMIDAMTQKLLDVKYED---- 344
T + IP S PL+ QL V T KLL +
Sbjct: 225 ----TPDKDYLLSIPISC-----PLIGVIQLAHYVV---------TAKLLGFTPGELRSY 266
Query: 345 ----TSKSKKVKV-----EPMDIECSLEKPVAALVELLF----------DEKAMTATLKE 385
T S+ + E E S V + +LF ++ ++ E
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWE-SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE 325
Query: 386 YELDMDR-----MPLGKLSAKHLAQGYSILNEVISVLDR-NAEADVKDRLILTLTNSFYT 439
L+ + M LS +L Q +V +++ N+ ++ ++L N
Sbjct: 326 DSLENNEGVPSPM----LSISNLTQ-----EQVQDYVNKTNSHLPAGKQVEISLVNG--- 373
Query: 440 HIPHSFGLADPPL-LDNKQLVVQKMEMIDAMTQIELAYTIKQEGP---------SAGVH- 488
+ ++ PP L L ++K + + Q + ++ + ++ H
Sbjct: 374 --AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS--ERKLKFSNRFLPVASPFHS 429
Query: 489 P-LVNCYEKLQANIKSVDTSHPHYEI-IHKYVQNTH-AKTHREYSLNI-----EAIFEVS 540
LV + + ++ + S +I I V +T R S +I + I
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIP--VYDTFDGSDLRVLSGSISERIVDCIIR-- 485
Query: 541 RHGEDKRFKPFEKLGNKHLLWHGSRLTNFAS--IISKGLCIAPPEAPVTGYMF-----GK 593
+ W T F + I+ G P A G + G
Sbjct: 486 ----------------LPVKW--ETTTQFKATHILDFG----PGGASGLGVLTHRNKDGT 523
Query: 594 G--IYFADSVSKSAN 606
G + A ++ + +
Sbjct: 524 GVRVIVAGTLDINPD 538
Score = 52.4 bits (125), Expect = 6e-07
Identities = 54/371 (14%), Positives = 100/371 (26%), Gaps = 150/371 (40%)
Query: 54 SQEKSVFKSKSGTVKLQIKDGLAVDPDSGLADTTELVK-YFD--DRYLNAVMGKTDVAAG 110
SQE+ G+ +D L T++ + ++ D + G
Sbjct: 1626 SQEQ----------------GMGMD----LYKTSKAAQDVWNRADNHFKDTYG------- 1658
Query: 111 KNSFYKLQVLKSKIHKEKYYLFRAWGRIGTSI----GGTKVQDFKD----VESAFDEFDR 162
F L ++ + F G G I + D E F E +
Sbjct: 1659 ---FSILDIVINN-PVNLTIHFG--GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 163 -----CFE------KETGNTSGKDAKQK--LTASI-----LRLGGDTVSDVRSHVA---- 200
F T T Q L+ G +D + A
Sbjct: 1713 HSTSYTFRSEKGLLSATQFT------QPALTLMEKAAFEDLKSKGLIPAD--ATFAGHSL 1764
Query: 201 ---AAIATKAAVENMEEG-------GKGARAMEELKEYG------IHVVPSKFIKDAANG 244
AA+A+ A V ++E G + E G I + P + +
Sbjct: 1765 GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 245 KVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTH 304
+ ++E++ + ++ + V N
Sbjct: 1825 ALQYVVERV---------GKRT--------GWLVEI--------VNY-------NV---- 1848
Query: 305 IPHSFGLADPPLLDNKQLVV-QKMEMIDAMTQKLLDVKYEDTSKSKKVKVEPMDIECSLE 363
+N+Q V + +D +T L + K +K+ + + SLE
Sbjct: 1849 -------------ENQQYVAAGDLRALDTVTNVL------NFIKLQKIDIIELQKSLSLE 1889
Query: 364 KPVAALVELLF 374
+ + LF
Sbjct: 1890 E----VEGHLF 1896
Score = 30.8 bits (69), Expect = 2.4
Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 51/152 (33%)
Query: 560 LW-----HGSRLTNFASI--ISKGLCIAPPEAPVT-GYMFGKGIYFADSVSKSANYCMTN 611
+W H F SI I P + G GK I NY
Sbjct: 1645 VWNRADNHFKDTYGF-SILDIVIN---NPVNLTIHFGGEKGKRIR--------ENY---- 1688
Query: 612 STNNVGLLLLCEVAL-GKVVLRYMFGKGIYFADSVSKSANYCMT------NSTNN--VGL 662
++ E + GK+ +F + S +Y ++T L
Sbjct: 1689 ------SAMIFETIVDGKLKTEKIF------KEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 663 LLLCEVALGKVVKKTQAEFVTKLPNGF--HSV 692
L+ E A + +K ++ + F HS+
Sbjct: 1737 TLM-EKAAFEDLK---SKGLIPADATFAGHSL 1764
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.5 bits (169), Expect = 3e-12
Identities = 84/617 (13%), Positives = 171/617 (27%), Gaps = 195/617 (31%)
Query: 63 KSGTVKLQIKDGLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKS 122
++G + Q KD L+V D+ + + K D +++ K ++ ++ S
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFD--CKDVQD-MPKSILSKEEID---------HIIMS 57
Query: 123 KIHKEK-YYLFRAWGRIGTSIGGTKVQDFKDVESAFD---EF------DRCFEKETGNTS 172
K LF + VQ F VE +F +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEM----VQKF--VEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 173 GKDAKQKLTASILRLGGDTVSDVRSHVAAAIATKA---------AVENMEEGGKGARAME 223
+ + +L VS R + ++ + GK A++
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVS--RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 224 ELKEYGIHVVPS------KFIKDAANGKVLELIEKM--NLAPWGSD--DSAKHLAQGYSI 273
Y + + VLE+++K+ + P + D + ++
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 274 LNEVIS-------------VLDRNAEADVKDR------------LILT--------LTNS 300
+ + VL +V++ L+ T L+ +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLL-----NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 301 FYTHIP---HSFGLADP-------------------------PLL--------------- 317
THI HS L P
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 318 DN-KQLVVQKMEMIDAMTQKLLDVK-----YED----------TSK------SKKVKVEP 355
DN K + K+ I + +L+ ++ + +K +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 356 MDIECSLEKPVAALVELLFDEKAMTATLKEYELDMD-RMPLGKLSAKH--LAQGYSILNE 412
M + L K +LVE K T ++ + ++ ++ L A H + Y+I
Sbjct: 405 MVVVNKLHK--YSLVEK--QPKESTISI--PSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 413 VISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLAD--------PPLLDNKQLVVQKME 464
D D + L FY+HI H + + + + + QK+
Sbjct: 459 F----------DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 465 -----------MIDAMTQIEL--AYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHY 511
+++ + Q++ Y + LVN I+ +
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPK---YERLVNAILDFLPKIEENLICSKYT 565
Query: 512 EIIHKYVQNTHAKTHRE 528
+++ + E
Sbjct: 566 DLLRIALMAEDEAIFEE 582
Score = 55.6 bits (133), Expect = 5e-08
Identities = 85/601 (14%), Positives = 176/601 (29%), Gaps = 156/601 (25%)
Query: 194 DVRSHVAAAIATKAAVENMEEGGKGARAMEELKEYGIHVVPSK---------FIKDAANG 244
D+ S A +++++ K + EE+ I + +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH--IIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 245 KVLELIEKMNLAPWGSDDSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTH 304
V + +E++ L Y L I R + + + + Y
Sbjct: 78 MVQKFVEEV-------------LRINYKFLMSPIKTEQRQPSMMTR--MYIEQRDRLYN- 121
Query: 305 IPHSFGLADPPLLDNKQLVVQKMEMIDAMTQKLLDVKYEDTSKSKKVKVEPMDIECSLEK 364
D + + V +++ + Q LL+++ +K V ++ + + K
Sbjct: 122 --------DNQVF--AKYNVSRLQPYLKLRQALLELR-----PAKNVLIDGV-LGSG--K 163
Query: 365 PVAALVELLFDEKAMTA--------TLKEYELDMDRM-PLGKLSAKHLAQGYSILNEVIS 415
AL ++ K LK + L KL + ++ ++ S
Sbjct: 164 TWVAL-DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-QIDPNWTSRSDHSS 221
Query: 416 VLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPL--LDNKQLVVQKMEMIDAMTQIE 473
+ ++ L L + Y + L L N VQ + +A
Sbjct: 222 NIKLRIH-SIQAELRRLLKSKPY---ENC-------LLVLLN----VQNAKAWNAFN--- 263
Query: 474 LAYTIKQEGPSAGVHPLVNCYEKLQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNI 533
++C K + T+ ++ Q T L+
Sbjct: 264 -----------------LSC--------KILLTT--------RFKQVTDF-------LSA 283
Query: 534 EAIFEVSRHGEDKRFKPFEKLGNKHLLWHGSRLTNFASIISKGLCIAPPEA----PVTGY 589
+S P E L L + + L P E P
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKS----L-----LLKYLDCRPQDL---PREVLTTNPRRLS 331
Query: 590 MFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVLRYMFGK-GIYFADSVS-K 647
+ + I D ++ N+ N ++ L R MF + + F S
Sbjct: 332 IIAESI--RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIP 388
Query: 648 SANYCM--TNSTNNVGLLLLCEVALGKVVKKTQAEFVTKLPNGFHSVQGQGRNCPDPKGS 705
+ + + + ++++ ++ +V+K E +P+ + ++ + N S
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 706 IVLDNNI--TVPLGTLIDLPRD---------------QAKNLSLLYNEFIVYDPAQVKIR 748
IV NI T LI D + ++L F+ + + KIR
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 749 Y 749
+
Sbjct: 509 H 509
Score = 53.3 bits (127), Expect = 3e-07
Identities = 68/457 (14%), Positives = 126/457 (27%), Gaps = 132/457 (28%)
Query: 34 LAVM--VQINARIGEAKDVKLK----SQEKSVFKSKSGTVKLQIKDGLAVDPDSGLADTT 87
L V+ VQ NA+ A ++ K ++ K V S I L
Sbjct: 247 LLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS---LDHHSMTL-TPD 301
Query: 88 ELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKE----KYYLFRAWGRIGTSIG 143
E+ +YL+ + +L ++ I + ++ T I
Sbjct: 302 EVKSLLL-KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 144 GT-KVQDFKDVESAFDEFDRCFEKETGNTSGKDAKQKLTASIL-RLGGDTVSDVRSHVAA 201
+ V + + FD F + +L + D + V
Sbjct: 361 SSLNVLEPAEYRKMFDRLS-VFPPSA----------HIPTILLSLIWFDVIKSDVMVVVN 409
Query: 202 AIATKAAVENMEEGGKGARAMEELKEYGIHVVPSKFIKDAANGKVLELIEKMNLAPWGSD 261
+ + VE + K + I LEL K+ +
Sbjct: 410 KLHKYSLVE---KQPKEST-------ISIP------------SIYLELKVKLE------N 441
Query: 262 DSAKH--LAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDN 319
+ A H + Y+I D D + L FY+HI H + P
Sbjct: 442 EYALHRSIVDHYNIPKTF----------DSDDLIPPYLDQYFYSHIGHHLKNIEHP---- 487
Query: 320 KQLVVQKMEMIDAMTQKLLDVKYEDTSKSKKVKVEPMDIECSLEKPVAALVELLFDEKAM 379
E + LD ++ + +K++ + + +++ L
Sbjct: 488 --------ERMTLFRMVFLDFRFLE----QKIRH-----DSTAWNASGSILNTLQQ---- 526
Query: 380 TATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYT 439
LK Y+ + I D E V IL
Sbjct: 527 ---LKFYK-------------PY-----------ICDNDPKYERLVNA--ILDFLPKIEE 557
Query: 440 HIPHSFGLADPPLLDNKQLVVQ-KMEMI--DAMTQIE 473
++ S D ++ + + E I +A Q++
Sbjct: 558 NLICS------KYTDLLRIALMAEDEAIFEEAHKQVQ 588
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation,
cell death, structural genomics; NMR {Arabidopsis
thaliana}
Length = 114
Score = 62.7 bits (152), Expect = 4e-12
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 2 SKHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINARIGEAKD 49
S KP+ +YAKS+R+ CK CK I + RL +VQ G
Sbjct: 5 SSGHKPWRAEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPM 52
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger,
PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1,
poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Length = 106
Score = 62.2 bits (151), Expect = 4e-12
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 2 SKHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINARIGEAK 48
K + +YAKS RA CK C ++I + +LR+A+MVQ G+
Sbjct: 10 ESSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVP 56
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc
finger, DNA binding protein-D complex; 2.40A {Homo
sapiens} PDB: 3oda_A
Length = 116
Score = 61.5 bits (149), Expect = 1e-11
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 2 SKHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINARIGEAK 48
K + +YAKS RA CK C ++I + +LR+A+MVQ G+
Sbjct: 23 ESSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVP 69
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding
domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation;
3.10A {Homo sapiens} PDB: 2l30_A
Length = 223
Score = 62.6 bits (151), Expect = 4e-11
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 2 SKHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINARIGEAK 48
S K + +YAKS RA CK C ++I + +LR+A+MVQ G+
Sbjct: 24 SHSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVP 70
Score = 39.4 bits (91), Expect = 0.002
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 1 MSKHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQ 39
K F +YAKSNR+ CKGC + I +G +RL+ +
Sbjct: 127 AEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMV 165
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc
finger, DNA binding protein-D complex; 2.80A {Homo
sapiens} PDB: 3ode_A 2l31_A
Length = 111
Score = 58.8 bits (142), Expect = 9e-11
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 2 SKHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQINAR 43
K F +YAKSNR+ CKGC + I +G +RL+ + +
Sbjct: 4 EKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEK 45
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell
division, DNA replication, nuclear protein; HET: DNA;
NMR {Homo sapiens} SCOP: g.39.1.12
Length = 117
Score = 57.0 bits (137), Expect = 4e-10
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 6 KPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQ 39
+ F DYAK A CK CK+ I++G R+ +V
Sbjct: 4 QRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVP 37
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis,
apoptosis, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 134
Score = 57.0 bits (137), Expect = 7e-10
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 2 SKHAKPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQ 39
K F +YAKSNR+ CKGC + I +G +RL+ +
Sbjct: 12 EKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMV 49
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural
genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Length = 113
Score = 51.8 bits (124), Expect = 2e-08
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 168 TGNTSGKDAKQKLTASILRLGGDTVSDVRSHVAAAIATKAAVENMEEGGKGARAMEELKE 227
G S K ++ A I +LGG ++ + + I+TK VE M K MEE+KE
Sbjct: 19 LGKLSRN--KDEVKAMIEKLGG-KLTGTANKASLCISTKKEVEKM--NKK----MEEVKE 69
Query: 228 YGIHVVPSKFIKD--AANGKVLELIEKMNLAPWGSDDSAK 265
I VV F++D A+ + EL L+ WG++ +
Sbjct: 70 ANIRVVSEDFLQDVSASTKSLQELFLAHILSSWGAEVKSG 109
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 40.7 bits (94), Expect = 4e-04
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 10/38 (26%)
Query: 174 KDAKQKLTASILRL-GGDTVSDVRSHVAAAIATKAAVE 210
K A +KL AS L+L D+ A A+A KA +E
Sbjct: 19 KQALKKLQAS-LKLYADDS--------APALAIKATME 47
Score = 31.8 bits (71), Expect = 0.39
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 14/38 (36%)
Query: 377 KAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVI 414
K + A+LK Y D SA LA + +
Sbjct: 23 KKLQASLKLYADD---------SAPALA-----IKATM 46
Score = 31.1 bits (69), Expect = 0.65
Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 22/49 (44%)
Query: 56 EKSVFKSKSGTVKLQIKDGLAVDPDS--GLADTTELVKYFDDRYLNAVM 102
EK K ++KL A DS LA + A M
Sbjct: 18 EKQALKKLQASLKL-----YA--DDSAPALA-------------IKATM 46
Score = 29.9 bits (66), Expect = 1.5
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
Query: 250 IEKM--NLAPWGSDDSAKHLAQGYSILNEVI 278
++K+ +L + +DDSA LA + +
Sbjct: 22 LKKLQASLKLY-ADDSAPALA-----IKATM 46
>4esu_A Ryanodine receptor 1; phosphorylation, skeletal, metal transport;
1.59A {Oryctolagus cuniculus} PDB: 4ert_A 4ett_A 4etu_A
3rqr_A
Length = 210
Score = 34.3 bits (78), Expect = 0.099
Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 10/130 (7%)
Query: 381 ATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTH 440
T E + ++ R P+ + +A ++I E + + ++ + T+
Sbjct: 65 KTFSEKDKEIYRWPIKESLKAMIAWEWTI-----EKAREGEEERTEKKKTRKISQTAQTY 119
Query: 441 IPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIE---LAYTIKQEGPSAG--VHPLVNCYE 495
P PP L L + M + + + KQE + G HPL+ Y+
Sbjct: 120 DPREGYNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQELEAKGGGTHPLLVPYD 179
Query: 496 KLQANIKSVD 505
L A K+ D
Sbjct: 180 TLTAKEKARD 189
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 32.6 bits (73), Expect = 0.51
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 112 NSFYKLQVLKSKIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGNT 171
F+ + V + + +G++GT G T+V++F A + ++T
Sbjct: 13 QKFWSIDVRGTD-------VIVNYGKLGTD-GQTQVKNFSSAGEAEKAAGKLIAEKTKKG 64
Query: 172 SGKDAKQ 178
+ ++
Sbjct: 65 YVETLEE 71
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 29.5 bits (67), Expect = 3.5
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 5/29 (17%)
Query: 204 ATKAAVENMEEGGKGARAMEELKEYGIHV 232
A+K + E ELK+ + +
Sbjct: 150 ASKWGMRGFLES-----LRAELKDSPLRL 173
>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein
structure initiative, CESG AT5G56660, ILL2,
indole-3-acetic acid, auxin; 2.00A {Arabidopsis
thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A
Length = 418
Score = 29.8 bits (68), Expect = 4.0
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 11/31 (35%)
Query: 213 EEGGKGARAMEELKE---------YGIHVVP 234
EEG GA+ M +E +GIH+
Sbjct: 151 EEGLSGAKKM--REEGALKNVEAIFGIHLSA 179
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 29.3 bits (66), Expect = 5.0
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 204 ATKAAVENMEEGGKGARAMEELKEYGIHVV 233
A KAA++ + A E L +GI
Sbjct: 162 AAKAAMDAIAV----QYARE-LSRWGIETS 186
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding,
structural GE PSI, protein structure initiative; 2.40A
{Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1
Length = 404
Score = 29.4 bits (67), Expect = 5.1
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 11/32 (34%)
Query: 213 EEGGKGARAMEELKE---------YGIHVVPS 235
EE GAR + L+ +G+H P
Sbjct: 157 EEIAAGARKV--LEAGVLNGVSAIFGMHNKPD 186
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase;
2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Length = 168
Score = 28.7 bits (65), Expect = 5.1
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 10/56 (17%)
Query: 427 DRLILTLTNSFYTHIPHSFGLAD---PPLLDNKQLVVQKMEMIDAMTQIELAYTIK 479
D L +T P+ FG L + +M ++ + L Y+++
Sbjct: 116 DELFVT-------VEPYVFGKGIPFFDEFEGYFPLKLLEMRRLNERGTLFLKYSVE 164
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 28.7 bits (65), Expect = 6.3
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 204 ATKAAVENMEEGGKGARAMEELKEYGIHVV 233
A K A+E E AR EL G+H+V
Sbjct: 136 AAKGALEAYLE---AARK--ELLREGVHLV 160
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal
binding protein; HET: PLP B12 5AD; 2.01A {Clostridium
sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A*
3kox_A*
Length = 763
Score = 29.2 bits (65), Expect = 7.0
Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 27/201 (13%)
Query: 71 IKDGLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKSKIHKEKYY 130
++ G VD + + R +N +G V + + K Y
Sbjct: 402 VEQGFFVDSGYYPERNGDGIA----RQINGGIGAGTVFERDEDYMAPVTAHFGYNNVKQY 457
Query: 131 LFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGNTSGKDAKQKLTASILRLGGD 190
I G ++ + + DE D E + N ++ K+ +S+++ +
Sbjct: 458 DEALVSEPSKLIDGCTLEVPEKIV-YIDELD---ENDNVNVRMEETKEFRHSSMIKPEVE 513
Query: 191 TVSDVRSH------VAAAIATKAAVE-------------NMEEGGKGARAMEELKEYGIH 231
+D + +A AA+E N E + ELK
Sbjct: 514 WQADGTVLLTMFLPTSKRVAEFAAIEFAKKMNLEEVEVINREVMQEAEGTRIELKGRVPF 573
Query: 232 VVPSKFIKDAANGKVLELIEK 252
+ + ++L E
Sbjct: 574 SIDINSLVIPPEPEILSEDEI 594
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin
biosynthesi antimicrobial target, structure-based
design, isomerase; 0.98A {Magnaporthe grisea} SCOP:
d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Length = 233
Score = 28.4 bits (64), Expect = 7.4
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 364 KPVAALVELLFDEKAMTATLKEYELDMDRMP-LGKLSAKH 402
+PVA + E++ D + + M R + +
Sbjct: 167 RPVAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRW 206
>3egl_A DEGV family protein; alpha-beta-alpha sandwich, methylated lysines,
structural GE PSI-2, protein structure initiative; HET:
MLY MSE PLM; 2.41A {Corynebacterium glutamicum}
Length = 277
Score = 28.4 bits (63), Expect = 8.1
Identities = 2/18 (11%), Positives = 7/18 (38%)
Query: 223 EELKEYGIHVVPSKFIKD 240
++ I V+ + +
Sbjct: 19 HVAEDLDITVINLHVMNN 36
>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D
superfamily, protein structure initiative II, NYSGXRC,
structural genomics; 2.50A {Klebsiella pneumoniae subsp}
Length = 445
Score = 28.5 bits (64), Expect = 9.0
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 7/29 (24%)
Query: 213 EEGGKGARAMEE---LKE----YGIHVVP 234
EEG +GARAM + + IH+
Sbjct: 184 EEGTRGARAMVAAGVVDDVDYFTAIHIGT 212
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.382
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,182,539
Number of extensions: 688605
Number of successful extensions: 1766
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1696
Number of HSP's successfully gapped: 73
Length of query: 758
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 657
Effective length of database: 3,881,772
Effective search space: 2550324204
Effective search space used: 2550324204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.9 bits)