RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6813
(758 letters)
>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase,
C-terminal domain {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 215
Score = 214 bits (545), Expect = 2e-65
Identities = 122/262 (46%), Positives = 154/262 (58%), Gaps = 48/262 (18%)
Query: 497 LQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGN 556
L+ +IK VD +II +YV+NTHA TH Y L + IF + R GE +R+KPF++L N
Sbjct: 1 LRTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQLHN 60
Query: 557 KHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNV 616
+ LLWHGSR TNFA I+S+GL IAPPEAPVTGYMFGK
Sbjct: 61 RQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGK----------------------- 97
Query: 617 GLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKK 676
GIYFAD VSKSANYC T+ + +GL+LL EVALG + +
Sbjct: 98 ---------------------GIYFADMVSKSANYCHTSQADPIGLILLGEVALGNMYEL 136
Query: 677 TQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNE 736
A +TKLP G HSV+G G+ PDP + LD + VPLG I + LLYNE
Sbjct: 137 KNASHITKLPKGKHSVKGLGKTAPDPTATTTLD-GVEVPLGNGIS---TGINDTCLLYNE 192
Query: 737 FIVYDPAQVKIRYILKVRFNYK 758
+IVYD AQV ++Y+LK++FNYK
Sbjct: 193 YIVYDVAQVNLKYLLKLKFNYK 214
>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 217
Score = 213 bits (544), Expect = 3e-65
Identities = 104/262 (39%), Positives = 141/262 (53%), Gaps = 46/262 (17%)
Query: 497 LQANIKSVDTSHPHYEIIHKYVQNTHAKTHREYSLNIEAIFEVSRHGEDKRFKPFEKLGN 556
L ++ +D +++I +Y+Q+THA TH++Y++ + +FEV + GE + F+ L N
Sbjct: 1 LHCALRPLDHESNEFKVISQYLQSTHAPTHKDYTMTLLDVFEVEKEGEKEAFRE--DLPN 58
Query: 557 KHLLWHGSRLTNFASIISKGLCIAPPEAPVTGYMFGKGIYFADSVSKSANYCMTNSTNNV 616
+ LLWHGSRL+N+ I+S GL +APPEAP+TGYMFGKGIYFAD SKSANYC + N
Sbjct: 59 RMLLWHGSRLSNWVGILSHGLRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNT 118
Query: 617 GLLLLCEVALGKVVLRYMFGKGIYFADSVSKSANYCMTNSTNNVGLLLLCEVALGKVVKK 676
GLLLL EVALG+ AN
Sbjct: 119 GLLLLSEVALGQCNELL--------------EANPKA----------------------- 141
Query: 677 TQAEFVTKLPNGFHSVQGQGRNCPDPKGSIVLDNNITVPLGTLIDLPRDQAKNLSLLYNE 736
L G HS +G G+ P P I L+ TVPLG D + +L YNE
Sbjct: 142 ------QGLLRGKHSTKGMGKMAPSPAHFITLN-GSTVPLGPASDTGILNPEGYTLNYNE 194
Query: 737 FIVYDPAQVKIRYILKVRFNYK 758
FIVY P QV++RY+LK++FN+
Sbjct: 195 FIVYSPNQVRMRYLLKIQFNFL 216
>d1gs0a1 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) polymerase
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 134
Score = 128 bits (324), Expect = 2e-35
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 359 ECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLD 418
E L+ V L++L+ + + M + E + D R PLGKL+ + GY L ++ +
Sbjct: 1 ESQLDLRVQELLKLICNVQTMEEMMIEMKYDTKRAPLGKLTVAQIKAGYQSLKKIEDCIR 60
Query: 419 RNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTI 478
R ++ N FYT IPH FGL+ PP++ ++ + K+++++A+ IE+A +
Sbjct: 61 AGQ----HGRALVEACNEFYTRIPHDFGLSIPPVIRTEKELSDKVKLLEALGDIEIALKL 116
Query: 479 KQEGPSAGVHPLVNCY 494
+ HPL Y
Sbjct: 117 VKSERQGLEHPLDQHY 132
Score = 66.3 bits (162), Expect = 1e-13
Identities = 20/95 (21%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 263 SAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQL 322
+ + GY L ++ + R ++ N FYT IPH FGL+ PP++ ++
Sbjct: 41 TVAQIKAGYQSLKKIEDCIRAGQ----HGRALVEACNEFYTRIPHDFGLSIPPVIRTEKE 96
Query: 323 VVQKMEMIDAMTQKLLDVKYEDTSKSKKVKVEPMD 357
+ K+++++A+ +++ + ++ P+D
Sbjct: 97 LSDKVKLLEALGD--IEIALKLVKSERQGLEHPLD 129
>d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) polymerase
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 135
Score = 127 bits (321), Expect = 4e-35
Identities = 53/139 (38%), Positives = 83/139 (59%), Gaps = 5/139 (3%)
Query: 359 ECSLEKPVAALVELLFDEKAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLD 418
+ L KP+ L++++FD ++M + E+E+D+ +MPLGKLS + + YSILNEV +
Sbjct: 1 KSKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVS 60
Query: 419 RNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMTQIELAYTI 478
+ IL L+N FYT IPH FG+ PPLL N + + K++M+D + IE+AY++
Sbjct: 61 DGG----SESQILDLSNRFYTLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLLDIEVAYSL 116
Query: 479 KQEG-PSAGVHPLVNCYEK 496
+ G P+ YEK
Sbjct: 117 LRGGNEDGDKDPIDINYEK 135
Score = 67.5 bits (165), Expect = 5e-14
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 263 SAKHLAQGYSILNEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQL 322
S + + YSILNEV + + IL L+N FYT IPH FG+ PPLL N +
Sbjct: 41 SKRQIQSAYSILNEVQQAVSDGG----SESQILDLSNRFYTLIPHDFGMKKPPLLSNLEY 96
Query: 323 VVQKMEMIDAM-----TQKLLDVKYEDTSK 347
+ K++M+D + LL ED K
Sbjct: 97 IQAKVQMLDNLLDIEVAYSLLRGGNEDGDK 126
>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 104 bits (262), Expect = 3e-27
Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Query: 63 KSGTVKLQIKDGLAVDPDSGLADTTELVKYFDDRYLNAVMGKTDVAAGKNSFYKLQVLKS 122
+KL +K G AVDPDSGL + +++ + +A +G D+ G NS+YKLQ+L+
Sbjct: 2 SEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVF-SATLGLVDIVKGTNSYYKLQLLED 60
Query: 123 KIHKEKYYLFRAWGRIGTSIGGTKVQDFKDVESAFDEFDRCFEKETGN 170
+ +Y++FR+WGR+GT IG K++ E A + F + +E++TGN
Sbjct: 61 DK-ENRYWIFRSWGRVGTVIGSNKLEQMPSKEDAIEHFMKLYEEKTGN 107
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens)
[TaxId: 9606]}
Length = 117
Score = 55.8 bits (134), Expect = 3e-10
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 6 KPFECDYAKSNRAKCKGCKDTIIQGTLRLAVMVQ 39
+ F DYAK A CK CK+ I++G R+ +V
Sbjct: 4 QRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVP 37
>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM
{Methylobacillus flagellatus [TaxId: 405]}
Length = 395
Score = 30.7 bits (69), Expect = 0.57
Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 8/137 (5%)
Query: 215 GGKGARAMEELKEYGIHVVPSKFIKDAANGKVLELIEKMNLAPWGSDDSAKHLAQGYSIL 274
G GA M E V+ + D ++ + A H ++
Sbjct: 47 KGFGAHLMNVRHERPCEVI--AAVDDFRYHSGELYYGLPIISTDRFTELATHDRDLVALN 104
Query: 275 NEVISVLDRNAEADVKDRLILTLTNSFYTHIPHSFGLADPPLLDNKQLVVQKMEMIDAMT 334
R + + I L G D + D +V+ + +
Sbjct: 105 TCRYDGPKRFFDQICRTHGIPHLNFEQAVRAFGLQGNVDYRVDDWGADIVRNIPAFQTLA 164
Query: 335 QKLLDVKYEDTSKSKKV 351
Q+L D S +
Sbjct: 165 QRLAD------DYSVQT 175
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex
aeolicus [TaxId: 63363]}
Length = 126
Score = 28.3 bits (63), Expect = 1.5
Identities = 14/75 (18%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 369 LVELLFDE--KAMTATLKEYELDMDRMPLGKLSAKHLAQGYSILNEVISVLDRNAEADVK 426
+ LL+D+ + + ++ Y+ ++ + K +++ + Y I++ + S LD ++
Sbjct: 20 QIILLYDKAIECLERAIEIYD-QVNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEIA 78
Query: 427 DRLILTLTNSFYTHI 441
L ++ YT I
Sbjct: 79 KNL-----DTIYTII 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.382
Gapped
Lambda K H
0.267 0.0559 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,657,016
Number of extensions: 122903
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 14
Length of query: 758
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 666
Effective length of database: 1,144,436
Effective search space: 762194376
Effective search space used: 762194376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)