BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6814
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 67 ITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKXX 126
+T+S F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PGE Q+F+ LYK
Sbjct: 180 VTVSCFF-FIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIG 238
Query: 127 XXXXXXXXXXFTMFVLKTFHAIPELKIMK 155
+ VL+TF + ELK +
Sbjct: 239 ITCYLLLGLIAMLVVLETFCELHELKKFR 267
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Query: 13 ITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSY 61
+T+S F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PG Y
Sbjct: 180 VTVSCFF-FIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGY 227
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 71 ILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQE 118
+LF+ P +VF +E +WS L+++YF +++TT+G GDY+ G P+Q+
Sbjct: 207 LLFVLTPTFVFCYME-DWSKLEAIYFVIVTLTTVGFGDYVAGADPRQD 253
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 17 ILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPG 58
+LF+ P +VF +E +WS L+++YF +++TT+G GDY+ G
Sbjct: 207 LLFVLTPTFVFCYME-DWSKLEAIYFVIVTLTTVGFGDYVAG 247
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 76 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
I +F S +D+LYF +++TT+G GD+ SPQ +F ++
Sbjct: 19 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGFGDF----SPQTDFGKIF 62
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 22 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFI 76
I +F S +D+LYF +++TT+G GD+ P + G + +IL+IFI
Sbjct: 19 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGFGDFSPQTDF-GKI---FTILYIFI 69
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 76 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
I +F S +D+LYF +++TT+G GD+ SPQ +F ++
Sbjct: 19 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDF----SPQTDFGKIF 62
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 22 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFI 76
I +F S +D+LYF +++TT+G GD+ P + G + +IL+IFI
Sbjct: 19 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDF-GKI---FTILYIFI 69
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 76 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
I +F S +D+LYF +++TT+G GD+ SPQ +F ++
Sbjct: 19 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGDF----SPQTDFGKIF 62
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 22 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFI 76
I +F S +D+LYF +++TT+G GD+ P + G + +IL+IFI
Sbjct: 19 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGDFSPQTDF-GKI---FTILYIFI 69
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 33.1 bits (74), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 1 LKIKFSYLGSLVITLSI-LFIFIPAYVFSSIEPNWSYL----DSLYFCFISITTIGLGDY 55
LK LG L+ L I + +F A F+ + S D+ ++ +S+TT+G GD
Sbjct: 321 LKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDM 380
Query: 56 IP---GLSYLGSLVITLSILFIFIPAYVFSSIEPNWSY 90
+P G +GSL +L I +P V S N++Y
Sbjct: 381 VPTTIGGKIVGSLCAIAGVLTIALPVPVIVS---NFNY 415
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 16/76 (21%)
Query: 52 LGDYIPGLSYLGSLV------ITLSILFIFIPAYVFSSI----EPNW------SYLDSLY 95
L + GL LG + + L I F+FI +FSS E + S D+ +
Sbjct: 307 LSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFW 366
Query: 96 FCFISITTIGLGDYIP 111
+ +S+TT+G GD +P
Sbjct: 367 WAVVSMTTVGYGDMVP 382
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 1 LKIKFSYLGSLVITLSI-LFIFIPAYVFSSIEPNWSYL----DSLYFCFISITTIGLGDY 55
LK LG L+ L I + +F A F+ + S D+ ++ +S+TT+G GD
Sbjct: 321 LKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDM 380
Query: 56 IP---GLSYLGSLVITLSILFIFIPAYVFSSIEPNWSY 90
+P G +GSL +L I +P V S N++Y
Sbjct: 381 VPTTIGGKIVGSLCAIAGVLTIALPVPVIVS---NFNY 415
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 16/76 (21%)
Query: 52 LGDYIPGLSYLGSLV------ITLSILFIFIPAYVFSSI----EPNW------SYLDSLY 95
L + GL LG + + L I F+FI +FSS E + S D+ +
Sbjct: 307 LSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFW 366
Query: 96 FCFISITTIGLGDYIP 111
+ +S+TT+G GD +P
Sbjct: 367 WAVVSMTTVGYGDMVP 382
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 1 LKIKFSYLGSLVITLSI-LFIFIPAYVFSSIEPNWSYL----DSLYFCFISITTIGLGDY 55
LK LG L+ L I + +F A F+ + S D+ ++ +S+TT+G GD
Sbjct: 336 LKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDM 395
Query: 56 IP---GLSYLGSLVITLSILFIFIPAYVFSS 83
+P G +GSL +L I +P V S
Sbjct: 396 VPTTIGGKIVGSLCAIAGVLTIALPVPVIVS 426
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 16/76 (21%)
Query: 52 LGDYIPGLSYLGSLV------ITLSILFIFIPAYVFSSI----EPNW------SYLDSLY 95
L + GL LG + + L I F+FI +FSS E + S D+ +
Sbjct: 322 LSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFW 381
Query: 96 FCFISITTIGLGDYIP 111
+ +S+TT+G GD +P
Sbjct: 382 WAVVSMTTVGYGDMVP 397
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 33.1 bits (74), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 1 LKIKFSYLGSLVITLSI-LFIFIPAYVFSSIEPNWSYL----DSLYFCFISITTIGLGDY 55
LK LG L+ L I + +F A F+ + S D+ ++ +S+TT+G GD
Sbjct: 336 LKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDM 395
Query: 56 IP---GLSYLGSLVITLSILFIFIPAYVFSSIEPNWSY 90
+P G +GSL +L I +P V S N++Y
Sbjct: 396 VPTTIGGKIVGSLCAIAGVLTIALPVPVIVS---NFNY 430
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 16/76 (21%)
Query: 52 LGDYIPGLSYLGSLV------ITLSILFIFIPAYVFSSI----EPNW------SYLDSLY 95
L + GL LG + + L I F+FI +FSS E + S D+ +
Sbjct: 322 LSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFW 381
Query: 96 FCFISITTIGLGDYIP 111
+ +S+TT+G GD +P
Sbjct: 382 WAVVSMTTVGYGDMVP 397
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 76 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
I +F S +D+L+F +++TT+G GD+ SPQ +F ++
Sbjct: 19 ISGTIFYSTVEGLRPIDALFFSVVTLTTVGYGDF----SPQTDFGKIF 62
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 22 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFI 76
I +F S +D+L+F +++TT+G GD+ P + G + +IL+IFI
Sbjct: 19 ISGTIFYSTVEGLRPIDALFFSVVTLTTVGYGDFSPQTDF-GKI---FTILYIFI 69
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 76 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
I +F S +D+LYF +++TT+G G++ SPQ +F ++
Sbjct: 36 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNF----SPQTDFGKIF 79
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 22 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFI 76
I +F S +D+LYF +++TT+G G++ P + G + +IL+IFI
Sbjct: 36 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDF-GKI---FTILYIFI 86
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 8 LGSLVITLSILFIFIPA-YVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLV 66
L ++ +L I IP VF E N +Y D+L++ ++ TT+G GD +P ++ +G ++
Sbjct: 16 LNRFLMIFVLLVIIIPVPMVFIEPEIN-NYPDALWWAIVTATTVGYGDIVP-VTPIGRIL 73
Query: 67 ITLSILF 73
++ +LF
Sbjct: 74 ASIMMLF 80
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 62 LGSLVITLSILFIFIPA-YVFSSIEPNWSYLDSLYFCFISITTIGLGDYIP 111
L ++ +L I IP VF E N +Y D+L++ ++ TT+G GD +P
Sbjct: 16 LNRFLMIFVLLVIIIPVPMVFIEPEIN-NYPDALWWAIVTATTVGYGDIVP 65
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 76 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
I +F S +D+LYF +++TT+G G++ SPQ +F ++
Sbjct: 19 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGEF----SPQTDFGKIF 62
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 22 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFI 76
I +F S +D+LYF +++TT+G G++ P + G + +IL+IFI
Sbjct: 19 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGEFSPQTDF-GKI---FTILYIFI 69
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 76 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
I +F S +D+L+F +++TT+G GD+ SPQ +F ++
Sbjct: 19 ISGTIFYSTVEGLRPIDALWFSVVTLTTVGYGDF----SPQTDFGKIF 62
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 22 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFI 76
I +F S +D+L+F +++TT+G GD+ P + G + +IL+IFI
Sbjct: 19 ISGTIFYSTVEGLRPIDALWFSVVTLTTVGYGDFSPQTDF-GKI---FTILYIFI 69
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 76 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
I +F S +D+LYF +++TT+G G++ SPQ +F ++
Sbjct: 19 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGNF----SPQTDFGKIF 62
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 22 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFI 76
I +F S +D+LYF +++TT+G G++ P + G + +IL+IFI
Sbjct: 19 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGNFSPQTDF-GKI---FTILYIFI 69
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 76 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
I +F S +D+LYF +++TT+G G++ SPQ +F ++
Sbjct: 36 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGEGNF----SPQTDFGKIF 79
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 22 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFI 76
I +F S +D+LYF +++TT+G G++ P + G + +IL+IFI
Sbjct: 36 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGEGNFSPQTDF-GKI---FTILYIFI 86
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 2 KIKFSYLGSLVITLSILFIFIPAYVFSSIEPN---WSYLDSLYFCFISITTIGLGDYIP 57
KI+F +L V+ L++L+ Y+ +PN S D+L++ ++ TT+G GD +P
Sbjct: 142 KIRFYHLFGAVM-LTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVP 199
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 67 ITLSILFIFIPAYVFSSIEPN---WSYLDSLYFCFISITTIGLGDYIP 111
+ L++L+ Y+ +PN S D+L++ ++ TT+G GD +P
Sbjct: 152 VMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVP 199
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 76 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
I +F S +D+LYF +++TT+G G++ SPQ +F ++
Sbjct: 36 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGNGNF----SPQTDFGKIF 79
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 22 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFI 76
I +F S +D+LYF +++TT+G G++ P + G + +IL+IFI
Sbjct: 36 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGNGNFSPQTDF-GKI---FTILYIFI 86
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 2 KIKFSYLGSLVITLSILFIFIPAYVFSSIEPN---WSYLDSLYFCFISITTIGLGDYIPG 58
KI+F +L V+ L++L+ Y+ +PN S D+L++ ++ TT+G GD +P
Sbjct: 130 KIRFYHLFGAVM-LTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPA 188
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 67 ITLSILFIFIPAYVFSSIEPN---WSYLDSLYFCFISITTIGLGDYIPG 112
+ L++L+ Y+ +PN S D+L++ ++ TT+G GD +P
Sbjct: 140 VMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPA 188
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 76 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
I +F S +D+LYF +++TT+G G++ SPQ +F ++
Sbjct: 36 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNF----SPQTDFGKIF 79
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 22 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFI 76
I +F S +D+LYF +++TT+G G++ P + G + +IL+IFI
Sbjct: 36 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDF-GKI---FTILYIFI 86
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 76 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
I +F S +D+LYF +++TT+G G++ SPQ +F ++
Sbjct: 18 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNF----SPQTDFGKIF 61
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 22 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFI 76
I +F S +D+LYF +++TT+G G++ P + G + +IL+IFI
Sbjct: 18 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDF-GKI---FTILYIFI 68
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Query: 91 LDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
LD+LYF +++TT+G G++ SPQ +F ++
Sbjct: 54 LDALYFSVVTLTTVGDGNF----SPQTDFGKVF 82
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Query: 37 LDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFI 76
LD+LYF +++TT+G G++ P + G + +IL+IFI
Sbjct: 54 LDALYFSVVTLTTVGDGNFSPQTDF-GKV---FTILYIFI 89
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 76 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
I +F S +D+LYF +++TT+G G++ PQ +F ++
Sbjct: 36 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNF----EPQTDFGKIF 79
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 22 IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFI 76
I +F S +D+LYF +++TT+G G++ P + G + +IL+IFI
Sbjct: 36 ISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFEPQTDF-GKI---FTILYIFI 86
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 35 SYLDSLYFCFISITTIGLGDYIP 57
S+ SLY+ F++I T+G GDY P
Sbjct: 35 SWTVSLYWTFVTIATVGYGDYSP 57
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 89 SYLDSLYFCFISITTIGLGDYIP 111
S+ SLY+ F++I T+G GDY P
Sbjct: 35 SWTVSLYWTFVTIATVGYGDYSP 57
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 35 SYLDSLYFCFISITTIGLGDYIP 57
S+ SLY+ F++I T+G GDY P
Sbjct: 45 SWTVSLYWTFVTIATVGYGDYSP 67
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 89 SYLDSLYFCFISITTIGLGDYIP 111
S+ SLY+ F++I T+G GDY P
Sbjct: 45 SWTVSLYWTFVTIATVGYGDYSP 67
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 35 SYLDSLYFCFISITTIGLGDYIP 57
S+ SLY+ F++I T+G GDY P
Sbjct: 45 SWTVSLYWTFVTIATVGYGDYSP 67
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 89 SYLDSLYFCFISITTIGLGDYIP 111
S+ SLY+ F++I T+G GDY P
Sbjct: 45 SWTVSLYWTFVTIATVGYGDYSP 67
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 35 SYLDSLYFCFISITTIGLGDYIP 57
S+ SLY+ F++I T+G GDY P
Sbjct: 28 SWTVSLYWTFVTIATVGYGDYSP 50
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 89 SYLDSLYFCFISITTIGLGDYIP 111
S+ SLY+ F++I T+G GDY P
Sbjct: 28 SWTVSLYWTFVTIATVGYGDYSP 50
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 35 SYLDSLYFCFISITTIGLGDYIP 57
S+ SLY+ F++I T+G GDY P
Sbjct: 28 SWTVSLYWTFVTIATVGYGDYSP 50
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 89 SYLDSLYFCFISITTIGLGDYIP 111
S+ SLY+ F++I T+G GDY P
Sbjct: 28 SWTVSLYWTFVTIATVGYGDYSP 50
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 35 SYLDSLYFCFISITTIGLGDYIP 57
S+ SLY+ F++I T+G GDY P
Sbjct: 28 SWTVSLYWTFVTIATVGYGDYSP 50
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 89 SYLDSLYFCFISITTIGLGDYIP 111
S+ SLY+ F++I T+G GDY P
Sbjct: 28 SWTVSLYWTFVTIATVGYGDYSP 50
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 1 LKIKFSYLGSLVITLSILFIFIPAYVFSSIEPN-WSYLDSLYFCFISITTIGLGD--YIP 57
LK+ Y L++ L + + I Y+ +E +S++ +Y+ +TT+G GD +
Sbjct: 17 LKVLLLYCAFLLVML-LAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFES 75
Query: 58 GLSYLGSLVITLS-ILFIFI 76
YL + ++T+S ++F+ I
Sbjct: 76 DAGYLFASIVTVSGVIFLLI 95
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 35 SYLDSLYFCFISITTIGLGDYIP 57
S+ SLY+ F++I +G GDY P
Sbjct: 28 SWTVSLYWTFVTIAAVGYGDYSP 50
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 89 SYLDSLYFCFISITTIGLGDYIP 111
S+ SLY+ F++I +G GDY P
Sbjct: 28 SWTVSLYWTFVTIAAVGYGDYSP 50
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 26.2 bits (56), Expect = 9.0, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 1 LKIKFSYLGSLVITLSILFIFIPAYVFSSIEPN-WSYLDSLYFCFISITTIGLGD--YIP 57
LK+ Y L++ L + + I Y+ +E +S++ +Y+ +TT+G GD +
Sbjct: 17 LKVLLLYCAFLLVML-LAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFES 75
Query: 58 GLSYLGSLVITLS-ILFIFI 76
YL + ++T+S ++F+ I
Sbjct: 76 DAGYLFASIVTVSGVIFLDI 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.147 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,482,214
Number of Sequences: 62578
Number of extensions: 161207
Number of successful extensions: 536
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 72
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)