Query psy6814
Match_columns 171
No_of_seqs 204 out of 1823
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:06:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4404|consensus 100.0 3.1E-31 6.7E-36 220.3 12.0 141 5-146 5-244 (350)
2 KOG1418|consensus 99.8 5.6E-21 1.2E-25 163.1 5.1 112 31-143 111-297 (433)
3 PF07885 Ion_trans_2: Ion chan 99.5 9.8E-16 2.1E-20 104.5 -0.9 71 72-150 5-78 (79)
4 PRK10537 voltage-gated potassi 99.2 2.3E-11 5.1E-16 105.9 5.9 68 87-161 166-234 (393)
5 KOG4404|consensus 99.2 3.6E-11 7.8E-16 100.8 5.1 53 4-57 156-208 (350)
6 KOG1418|consensus 99.1 1.1E-10 2.3E-15 99.8 4.4 64 87-157 113-176 (433)
7 KOG3713|consensus 99.1 2.4E-10 5.2E-15 100.4 6.2 51 90-147 378-428 (477)
8 PF07885 Ion_trans_2: Ion chan 98.9 2.6E-10 5.6E-15 77.6 -0.6 33 31-64 20-52 (79)
9 KOG1419|consensus 98.8 1.8E-09 3.8E-14 96.1 3.3 68 89-163 269-341 (654)
10 KOG1545|consensus 98.6 6E-09 1.3E-13 89.1 0.4 52 89-147 393-444 (507)
11 PLN03192 Voltage-dependent pot 98.6 6.7E-09 1.5E-13 97.8 -0.3 54 90-150 251-304 (823)
12 KOG1420|consensus 98.2 2.7E-06 5.8E-11 76.9 5.9 69 74-149 261-341 (1103)
13 KOG3713|consensus 98.0 7.8E-06 1.7E-10 72.3 5.3 62 2-64 339-405 (477)
14 KOG0498|consensus 98.0 1.2E-06 2.7E-11 81.2 -1.0 54 90-150 295-348 (727)
15 PRK10537 voltage-gated potassi 97.9 1.5E-05 3.3E-10 69.7 4.4 32 32-64 165-196 (393)
16 KOG1545|consensus 97.8 1.8E-05 4E-10 68.1 4.4 55 3-57 356-415 (507)
17 KOG3193|consensus 97.8 2.4E-05 5.3E-10 70.5 4.8 72 68-146 192-267 (1087)
18 KOG4390|consensus 97.8 1.2E-06 2.7E-11 75.8 -4.0 49 90-145 357-405 (632)
19 KOG3684|consensus 97.7 1E-05 2.3E-10 71.0 0.2 87 70-163 261-355 (489)
20 KOG1419|consensus 97.5 9E-05 2E-09 66.6 4.0 31 33-64 267-297 (654)
21 KOG0501|consensus 97.4 0.00011 2.3E-09 66.8 2.7 52 90-148 424-475 (971)
22 KOG4390|consensus 97.3 0.00017 3.6E-09 62.9 2.9 57 1-57 317-378 (632)
23 PLN03192 Voltage-dependent pot 96.9 0.00045 9.8E-09 65.4 1.9 21 38-58 253-273 (823)
24 KOG1420|consensus 96.3 0.0056 1.2E-07 56.0 4.7 78 1-82 242-331 (1103)
25 PF01007 IRK: Inward rectifier 96.1 0.0025 5.4E-08 54.8 1.2 22 35-56 84-105 (336)
26 PF01007 IRK: Inward rectifier 95.7 0.00062 1.3E-08 58.4 -3.9 52 89-145 84-135 (336)
27 KOG0501|consensus 95.0 0.01 2.3E-07 54.3 1.3 24 35-58 423-446 (971)
28 KOG3193|consensus 94.8 0.035 7.5E-07 50.7 4.1 28 31-58 213-240 (1087)
29 KOG3684|consensus 92.4 0.035 7.6E-07 49.3 -0.2 47 17-64 262-315 (489)
30 KOG3827|consensus 92.2 0.32 7E-06 42.4 5.4 23 35-57 112-134 (400)
31 KOG0500|consensus 87.3 0.24 5.3E-06 44.5 0.8 49 92-148 186-234 (536)
32 KOG0498|consensus 86.3 0.17 3.8E-06 47.6 -0.6 22 37-58 296-317 (727)
33 PF00520 Ion_trans: Ion transp 82.2 0.12 2.7E-06 38.8 -2.9 54 89-144 145-199 (200)
34 KOG3827|consensus 78.6 4.2 9.1E-05 35.7 4.9 52 89-145 112-163 (400)
35 PF00520 Ion_trans: Ion transp 76.6 0.52 1.1E-05 35.3 -1.1 53 6-58 98-168 (200)
36 KOG0499|consensus 71.3 1.3 2.8E-05 41.1 -0.0 56 88-151 402-457 (815)
37 PF04694 Corona_3: Coronavirus 53.2 12 0.00025 23.7 1.9 23 89-111 16-47 (60)
38 COG0168 TrkG Trk-type K+ trans 46.4 8.3 0.00018 35.0 0.6 71 71-143 407-480 (499)
39 TIGR00933 2a38 potassium uptak 45.4 2.1 4.6E-05 37.2 -3.2 126 1-134 95-271 (390)
40 COG3114 CcmD Heme exporter pro 39.9 23 0.0005 23.3 1.8 26 127-152 17-42 (67)
41 PF00060 Lig_chan: Ligand-gate 33.1 4.6 0.0001 29.3 -2.7 52 89-148 44-95 (148)
42 COG1006 MnhC Multisubunit Na+/ 32.8 1.3E+02 0.0028 22.0 5.0 29 124-152 73-101 (115)
43 PRK13664 hypothetical protein; 28.8 1.6E+02 0.0036 18.9 4.5 35 131-165 10-44 (62)
44 PF04995 CcmD: Heme exporter p 27.9 1.4E+02 0.003 17.8 3.9 31 128-158 6-37 (46)
45 PF09425 CCT_2: Divergent CCT 27.6 37 0.00081 18.4 1.0 20 151-170 6-25 (27)
46 KOG1052|consensus 25.3 78 0.0017 29.3 3.4 47 95-149 387-433 (656)
47 PF07330 DUF1467: Protein of u 21.8 2.5E+02 0.0054 19.3 4.6 16 107-122 33-48 (85)
No 1
>KOG4404|consensus
Probab=99.97 E-value=3.1e-31 Score=220.28 Aligned_cols=141 Identities=35% Similarity=0.690 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccccC---------------------------------------------CCCCCccCc
Q psy6814 5 FSYLGSLVITLSILFIFIPAYVFSSI---------------------------------------------EPNWSYLDS 39 (171)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~w~~~~a 39 (171)
=+++..+++.+.+.|+++||.+|..- ..+|+|.+|
T Consensus 5 qnvR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~Ga 84 (350)
T KOG4404|consen 5 QNVRTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGA 84 (350)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcc
Confidence 36777888889999999999999643 149999999
Q ss_pred eeeeeeeEeccccCCCCcc-------------------c----------------------cccc---------h---hh
Q psy6814 40 LYFCFISITTIGLGDYIPG-------------------L----------------------SYLG---------S---LV 66 (171)
Q Consensus 40 ~yF~~~~lTTiGyGd~~Pg-------------------l----------------------~~~g---------~---l~ 66 (171)
|||+.|++||||||+.+|+ | ++.| | +.
T Consensus 85 FYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~~~~~r~~~~S~~~l~~i~ 164 (350)
T KOG4404|consen 85 FYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRRRLGRRRWDVSVYNLVLIL 164 (350)
T ss_pred eEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcHHHHHHHH
Confidence 9999999999999999993 0 1111 1 23
Q ss_pred hhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCC-CcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814 67 ITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESP-QQEFKSLYKIIVSVYLILSLLFTMFVLKTF 145 (171)
Q Consensus 67 ~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~-~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i 145 (171)
.....+.++.|+.+|+..| +|+|+||+||||||+|||||||+|+.++. ....+|.|+.+..+||++|+++++.++|.+
T Consensus 165 ~~~~~~~i~~gaa~fs~~E-~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~Nll 243 (350)
T KOG4404|consen 165 FTACILLICCGAAMFSSVE-GWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLL 243 (350)
T ss_pred HHHHHHHHHhhHHHhhccc-CcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHH
Confidence 3344677789999999999 99999999999999999999999999873 335678999999999999999999999976
Q ss_pred H
Q psy6814 146 H 146 (171)
Q Consensus 146 ~ 146 (171)
+
T Consensus 244 v 244 (350)
T KOG4404|consen 244 V 244 (350)
T ss_pred H
Confidence 6
No 2
>KOG1418|consensus
Probab=99.82 E-value=5.6e-21 Score=163.07 Aligned_cols=112 Identities=35% Similarity=0.690 Sum_probs=88.4
Q ss_pred CCCCCccCceeeeeeeEeccccCCCCc----c------------------ccccch------------------------
Q psy6814 31 EPNWSYLDSLYFCFISITTIGLGDYIP----G------------------LSYLGS------------------------ 64 (171)
Q Consensus 31 ~~~w~~~~a~yF~~~~lTTiGyGd~~P----g------------------l~~~g~------------------------ 64 (171)
.++|+|.+|+|||+|++|||||||++| | +.++|+
T Consensus 111 ~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 190 (433)
T KOG1418|consen 111 TQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLYRRRHVELQRDRIRS 190 (433)
T ss_pred CcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 357999999999999999999999999 2 011110
Q ss_pred ----------------------------hhhhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCC
Q psy6814 65 ----------------------------LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQ 116 (171)
Q Consensus 65 ----------------------------l~~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~ 116 (171)
..+..+++++..++.++...| +|+|+||+||+++|+|||||||++|.+..+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~w~f~~~~Yf~fisltTIG~GD~vp~~~~~ 269 (433)
T KOG1418|consen 191 NLRRSIGLRNRSVELGIELLDELRFILLLLLGISLVYLSPGSLLFSLQE-QWSFIEAFYFSFISLTTIGFGDIVPRTLLG 269 (433)
T ss_pred hhhccccchhcccccchhhccCcceehhhhheeeEEEecccceeeecee-ceeeEeeeeEEEEEeeeecCCccccCCCcc
Confidence 112223456677788888888 799999999999999999999999999876
Q ss_pred cc-cccchhhhhhHHHHHHHHHHHHHHH
Q psy6814 117 QE-FKSLYKIIVSVYLILSLLFTMFVLK 143 (171)
Q Consensus 117 ~~-~~~~~~~~~~~~i~~Gl~~~~~~~~ 143 (171)
.. +...++....+++.+|+..++....
T Consensus 270 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 297 (433)
T KOG1418|consen 270 RFRREELVDPLASVWILSGLALLALVLL 297 (433)
T ss_pred eeeccccccchhHHHHHhhhhHHHHHhh
Confidence 43 2233468899999999999999884
No 3
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.52 E-value=9.8e-16 Score=104.52 Aligned_cols=71 Identities=30% Similarity=0.702 Sum_probs=56.4
Q ss_pred HHHhhhhhhhcc---cCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy6814 72 LFIFIPAYVFSS---IEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAI 148 (171)
Q Consensus 72 i~i~iga~if~~---~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~ 148 (171)
..+..++..+.. .| +|++.|++||+++|+|||||||+.|.++.+ |++++++++.|+.+++..++.+.+.
T Consensus 5 ~~l~~~~~~~~~~~~~~-~~~~~da~yfs~~t~tTvGyGDi~p~t~~g-------r~~~~~~~~~G~~~~~~~~~~~~~~ 76 (79)
T PF07885_consen 5 LVLAFGAIFFYISEGSE-KWSFIDALYFSFVTITTVGYGDIVPQTPAG-------RIFTIIYMLIGIFLFALFLSVLASV 76 (79)
T ss_dssp HHHHHHHHHHHHTTSSS-TTSHHHHHHHHHHHHTT---SSSSTSSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHhcccCCCccCCccch-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544 33 899999999999999999999999997665 9999999999999999999988876
Q ss_pred hH
Q psy6814 149 PE 150 (171)
Q Consensus 149 ~~ 150 (171)
.+
T Consensus 77 l~ 78 (79)
T PF07885_consen 77 LT 78 (79)
T ss_dssp HH
T ss_pred hc
Confidence 55
No 4
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.19 E-value=2.3e-11 Score=105.87 Aligned_cols=68 Identities=16% Similarity=0.359 Sum_probs=57.9
Q ss_pred ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHhhcc
Q psy6814 87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA-IPELKIMKILSLRF 161 (171)
Q Consensus 87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~-~~~~~~~~~~~~~~ 161 (171)
.+++.||+||+++|+||+||||+.|.+..+ |++++.+++.|++++++.++.+.. ..+.++++..+.++
T Consensus 166 ~~s~~dA~y~svvt~tTvGyGdi~p~t~~g-------rl~~i~~ii~Gi~vf~~~is~i~~p~i~~~l~~~~~~~~ 234 (393)
T PRK10537 166 IESLSTAFYFSIVTMSTVGYGDIVPVSESA-------RLFTISVIILGITVFATSISAIFGPVIRGNLKRLVKGRI 234 (393)
T ss_pred CCCHHHHHHhhheeeecccCCCCCCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 379999999999999999999999999776 999999999999999999987765 56656666655443
No 5
>KOG4404|consensus
Probab=99.16 E-value=3.6e-11 Score=100.84 Aligned_cols=53 Identities=47% Similarity=0.893 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhccccCCCCCCccCceeeeeeeEeccccCCCCc
Q psy6814 4 KFSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIP 57 (171)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~P 57 (171)
+....+.+..+...+-++.||.+|... |+|+|.||.|||++|+|||||||.++
T Consensus 156 S~~~l~~i~~~~~~~~i~~gaa~fs~~-E~Wsyfds~YyCFITltTIGFGDyVa 208 (350)
T KOG4404|consen 156 SVYNLVLILFTACILLICCGAAMFSSV-EGWSYFDSYYYCFITLTTIGFGDYVA 208 (350)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHhhcc-cCcchhhhhheeeeeeeeccccchhh
Confidence 344556666777778889999999974 89999999999999999999999999
No 6
>KOG1418|consensus
Probab=99.07 E-value=1.1e-10 Score=99.76 Aligned_cols=64 Identities=22% Similarity=0.511 Sum_probs=58.3
Q ss_pred ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy6814 87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPELKIMKIL 157 (171)
Q Consensus 87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~~~~~~~~ 157 (171)
.|+|.+|+|||++++|||||||++|.+..| |+++++|.++|+.++...++.+.+.....+.+..
T Consensus 113 ~W~f~~al~fs~tv~TTIGYG~i~P~T~~G-------r~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~ 176 (433)
T KOG1418|consen 113 QWSFSSALLFSITVITTIGYGNIAPRTDAG-------RLFTILYALVGIPLMLLILADIGKFLADSLRKLY 176 (433)
T ss_pred ceecchhHhhhhheeeeccCCcccCCcCcc-------hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999888 9999999999999999999988887776655544
No 7
>KOG3713|consensus
Probab=99.06 E-value=2.4e-10 Score=100.36 Aligned_cols=51 Identities=18% Similarity=0.430 Sum_probs=46.2
Q ss_pred cccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6814 90 YLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA 147 (171)
Q Consensus 90 ~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~ 147 (171)
.--++||++||+|||||||.+|.|.+| |+++..-++.|+.++++-+..+.+
T Consensus 378 IPa~~WWaiVTMTTVGYGDm~P~T~~G-------klvas~cil~GVLvlAlPItiIv~ 428 (477)
T KOG3713|consen 378 IPAGFWWAVVTMTTVGYGDMVPVTVLG-------KLVASLCILCGVLVLALPITIIVN 428 (477)
T ss_pred ccchhheeeEEEeeecccCccccccch-------HHHHHHHHHHhHHHhhcchHhHhh
Confidence 346789999999999999999999998 999999999999999998876664
No 8
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.87 E-value=2.6e-10 Score=77.57 Aligned_cols=33 Identities=45% Similarity=1.046 Sum_probs=26.8
Q ss_pred CCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 31 EPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 31 ~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
.|+|++.||+||+++++|||||||+.|. ++.||
T Consensus 20 ~~~~~~~da~yfs~~t~tTvGyGDi~p~-t~~gr 52 (79)
T PF07885_consen 20 SEKWSFIDALYFSFVTITTVGYGDIVPQ-TPAGR 52 (79)
T ss_dssp SSTTSHHHHHHHHHHHHTT---SSSSTS-SHHHH
T ss_pred cccCCHHHHHHHHHHHHhcccCCCccCC-ccchH
Confidence 4699999999999999999999999997 56666
No 9
>KOG1419|consensus
Probab=98.84 E-value=1.8e-09 Score=96.11 Aligned_cols=68 Identities=24% Similarity=0.426 Sum_probs=57.2
Q ss_pred ccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHhhccCC
Q psy6814 89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA-----IPELKIMKILSLRFND 163 (171)
Q Consensus 89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~-----~~~~~~~~~~~~~~~~ 163 (171)
+|.||+||..||+|||||||.+|.+..| |+++..+.++|+..++..-+.+.+ +.|.+=.+++.++|+.
T Consensus 269 TyADALWWG~ITltTIGYGDk~P~TWlG-------r~laa~fsligiSFFALPAGILGSGfALKVQeq~RQKHf~rrr~p 341 (654)
T KOG1419|consen 269 TYADALWWGVITLTTIGYGDKTPQTWLG-------RLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQKHFNRRRNP 341 (654)
T ss_pred hHHHHHHhhheeEEeeccCCcCcccchh-------HHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHHhhcch
Confidence 6899999999999999999999999988 999999999999999988877764 4454456666666643
No 10
>KOG1545|consensus
Probab=98.64 E-value=6e-09 Score=89.09 Aligned_cols=52 Identities=25% Similarity=0.438 Sum_probs=45.7
Q ss_pred ccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6814 89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA 147 (171)
Q Consensus 89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~ 147 (171)
+.-||+||+++|+|||||||.+|.+..| |++..+..+.|+..+++-+-++++
T Consensus 393 SIPdaFWwavVTMTTVGYGDm~P~TvgG-------KIVGslCAiaGVLTiALPVPVIVs 444 (507)
T KOG1545|consen 393 SIPDAFWWAVVTMTTVGYGDMVPVTVGG-------KIVGSLCAIAGVLTIALPVPVIVS 444 (507)
T ss_pred cCcccceEEEEEEEeeccccceecccCc-------eehhhHHhhhhheEecccccEEEe
Confidence 4579999999999999999999999877 999999999999888887765553
No 11
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.61 E-value=6.7e-09 Score=97.77 Aligned_cols=54 Identities=20% Similarity=0.538 Sum_probs=48.5
Q ss_pred cccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhH
Q psy6814 90 YLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPE 150 (171)
Q Consensus 90 ~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~ 150 (171)
|..|+||+++|+|||||||++|.+..+ ++++++++++|+++.++.++.+.+++.
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E-------~i~~i~~ml~g~~~~a~~ig~i~~li~ 304 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIE-------MIFIIFYMLFNLGLTAYLIGNMTNLVV 304 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccch-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445899999999999999999999876 999999999999999999988887543
No 12
>KOG1420|consensus
Probab=98.19 E-value=2.7e-06 Score=76.85 Aligned_cols=69 Identities=14% Similarity=0.315 Sum_probs=56.3
Q ss_pred HhhhhhhhcccCC---c---------cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHH
Q psy6814 74 IFIPAYVFSSIEP---N---------WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFV 141 (171)
Q Consensus 74 i~iga~if~~~e~---~---------ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~ 141 (171)
.+.++.+.+..|+ . .+|.|++||-++|++||||||+--.+..| |.|.+++++.|++..+..
T Consensus 261 wltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lg-------rlfmvffil~glamfasy 333 (1103)
T KOG1420|consen 261 WLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLG-------RLFMVFFILGGLAMFASY 333 (1103)
T ss_pred HHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhh-------HHHHHHHHHHHHHHHHhh
Confidence 3455556665553 2 37889999999999999999999999887 999999999999999988
Q ss_pred HHHHHHhh
Q psy6814 142 LKTFHAIP 149 (171)
Q Consensus 142 ~~~i~~~~ 149 (171)
+-.+.+++
T Consensus 334 vpeiieli 341 (1103)
T KOG1420|consen 334 VPEIIELI 341 (1103)
T ss_pred hHHHHHHH
Confidence 87666654
No 13
>KOG3713|consensus
Probab=98.02 E-value=7.8e-06 Score=72.31 Aligned_cols=62 Identities=23% Similarity=0.471 Sum_probs=42.8
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhccccCCC-----CCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 2 KIKFSYLGSLVITLSILFIFIPAYVFSSIEP-----NWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
|++.--+..+++.+.+.-.++.+++++.+.+ --+.+-++.+|++|+|||||||++|. +..|+
T Consensus 339 r~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~-T~~Gk 405 (477)
T KOG3713|consen 339 RRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPV-TVLGK 405 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCcccc-ccchH
Confidence 4444445555555555555566666654321 34788999999999999999999996 56666
No 14
>KOG0498|consensus
Probab=97.95 E-value=1.2e-06 Score=81.23 Aligned_cols=54 Identities=20% Similarity=0.458 Sum_probs=48.6
Q ss_pred cccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhH
Q psy6814 90 YLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPE 150 (171)
Q Consensus 90 ~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~ 150 (171)
|.-|+||++.|+||+||||..|.+... ++|+++++++|+.+.+++++++..+++
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E-------~iFsi~~mi~GllL~A~lIGNmt~~iq 348 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGE-------KIFSIFIMLFGLLLFAYLIGNMTALLQ 348 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHH-------HHHHHHHHHHhHHHHHHHHhhHHHhHH
Confidence 567899999999999999999998765 999999999999999999988877554
No 15
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.87 E-value=1.5e-05 Score=69.66 Aligned_cols=32 Identities=31% Similarity=0.585 Sum_probs=28.0
Q ss_pred CCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 32 PNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 32 ~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
..|++.||+||+++|+||+||||+.|. +..|+
T Consensus 165 ~~~s~~dA~y~svvt~tTvGyGdi~p~-t~~gr 196 (393)
T PRK10537 165 PIESLSTAFYFSIVTMSTVGYGDIVPV-SESAR 196 (393)
T ss_pred CCCCHHHHHHhhheeeecccCCCCCCC-CHHHH
Confidence 568999999999999999999999995 44455
No 16
>KOG1545|consensus
Probab=97.85 E-value=1.8e-05 Score=68.06 Aligned_cols=55 Identities=27% Similarity=0.476 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhccccC-CC----CCCccCceeeeeeeEeccccCCCCc
Q psy6814 3 IKFSYLGSLVITLSILFIFIPAYVFSSI-EP----NWSYLDSLYFCFISITTIGLGDYIP 57 (171)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~w~~~~a~yF~~~~lTTiGyGd~~P 57 (171)
++.--+..++..+++..+++...++... ++ --+.+|||.|+++|+|||||||..|
T Consensus 356 aSmrElgLLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P 415 (507)
T KOG1545|consen 356 ASMRELGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVP 415 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeecccccee
Confidence 3333334444444444444444444322 11 3488999999999999999999999
No 17
>KOG3193|consensus
Probab=97.81 E-value=2.4e-05 Score=70.48 Aligned_cols=72 Identities=18% Similarity=0.382 Sum_probs=48.4
Q ss_pred hHHHHHHhhhhhhhcccC----CccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHH
Q psy6814 68 TLSILFIFIPAYVFSSIE----PNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLK 143 (171)
Q Consensus 68 ~llli~i~iga~if~~~e----~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~ 143 (171)
..+++.++.+.....++. +..+.+.++||.++|++||||||.+|.-.++ ++-+.+.+.+.+.++.--+.
T Consensus 192 s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~s-------ql~~vi~icval~~ip~q~~ 264 (1087)
T KOG3193|consen 192 SVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWAS-------QLCVVILICVALGLIPKQLD 264 (1087)
T ss_pred HHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchh-------hHHHHHHHHHHHhccHHHHH
Confidence 334455555554444332 2467899999999999999999999998877 45555556566655555444
Q ss_pred HHH
Q psy6814 144 TFH 146 (171)
Q Consensus 144 ~i~ 146 (171)
.+.
T Consensus 265 ~l~ 267 (1087)
T KOG3193|consen 265 ELG 267 (1087)
T ss_pred HHH
Confidence 433
No 18
>KOG4390|consensus
Probab=97.76 E-value=1.2e-06 Score=75.82 Aligned_cols=49 Identities=20% Similarity=0.452 Sum_probs=42.8
Q ss_pred cccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814 90 YLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTF 145 (171)
Q Consensus 90 ~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i 145 (171)
.-.|+||+++|+||.||||.+|.+-.| |++..+..+.|+.++++-+-++
T Consensus 357 IPaaFWYTIVTmTTLGYGDMVp~TIaG-------KIfGsiCSLSGVLVIALPVPvI 405 (632)
T KOG4390|consen 357 IPAAFWYTIVTMTTLGYGDMVPSTIAG-------KIFGSICSLSGVLVIALPVPVI 405 (632)
T ss_pred CcHhHhhheeeeeeccccccchHHHHH-------HHhhhhhcccceEEEeccccEE
Confidence 457899999999999999999999887 9999999999998888776433
No 19
>KOG3684|consensus
Probab=97.66 E-value=1e-05 Score=71.04 Aligned_cols=87 Identities=18% Similarity=0.280 Sum_probs=66.7
Q ss_pred HHHHHhhhhhhhcccCC-------ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHH
Q psy6814 70 SILFIFIPAYVFSSIEP-------NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVL 142 (171)
Q Consensus 70 lli~i~iga~if~~~e~-------~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~ 142 (171)
.+.++++.++++..-|+ .-.+.+++|+..+|+-+|||||++|.+.-| |-.+++--++|.+..+.++
T Consensus 261 tl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycG-------r~v~l~tGivGa~~sallv 333 (489)
T KOG3684|consen 261 TLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCG-------RGVALLTGIVGAGCSSLLV 333 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCcccc-------chHHHHhhhhhhhHHHHHH
Confidence 34555666666665553 224789999999999999999999999988 8889999999999999999
Q ss_pred HHHHHhhHHH-HHHHHhhccCC
Q psy6814 143 KTFHAIPELK-IMKILSLRFND 163 (171)
Q Consensus 143 ~~i~~~~~~~-~~~~~~~~~~~ 163 (171)
.++.+=.|.+ -+|+....++|
T Consensus 334 AvisRKLeLt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 334 AVIARKLELTKAEKHVHNFMMD 355 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888755554 55555444444
No 20
>KOG1419|consensus
Probab=97.52 E-value=9e-05 Score=66.65 Aligned_cols=31 Identities=42% Similarity=0.760 Sum_probs=27.3
Q ss_pred CCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 33 NWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 33 ~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
-=+|.||+.|..+|+|||||||.+|. ..+|+
T Consensus 267 F~TyADALWWG~ITltTIGYGDk~P~-TWlGr 297 (654)
T KOG1419|consen 267 FPTYADALWWGVITLTTIGYGDKTPQ-TWLGR 297 (654)
T ss_pred chhHHHHHHhhheeEEeeccCCcCcc-cchhH
Confidence 34899999999999999999999996 55666
No 21
>KOG0501|consensus
Probab=97.38 E-value=0.00011 Score=66.83 Aligned_cols=52 Identities=29% Similarity=0.579 Sum_probs=45.2
Q ss_pred cccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy6814 90 YLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAI 148 (171)
Q Consensus 90 ~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~ 148 (171)
|..++||++.++||||||++.|.++.. |+|.+..+++|-.+-+..++.+..+
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~E-------KiF~v~mMii~aLLYAtIFG~vTTI 475 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNE-------KIFGVCMMIIGALLYATIFGHVTTI 475 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHH-------HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 568899999999999999999999876 9999999999988888888655543
No 22
>KOG4390|consensus
Probab=97.30 E-value=0.00017 Score=62.85 Aligned_cols=57 Identities=28% Similarity=0.490 Sum_probs=46.5
Q ss_pred CcchhhHHHHHHHHHHHHHHHhhhhccccCC-----CCCCccCceeeeeeeEeccccCCCCc
Q psy6814 1 LKIKFSYLGSLVITLSILFIFIPAYVFSSIE-----PNWSYLDSLYFCFISITTIGLGDYIP 57 (171)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~w~~~~a~yF~~~~lTTiGyGd~~P 57 (171)
||.|-+-+.-++..+..+-++++..+|+... +--+.+.||.|+++|+||.||||.+|
T Consensus 317 LKSCASELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp 378 (632)
T KOG4390|consen 317 LKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVP 378 (632)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccch
Confidence 4556667777788888888899999998532 13378899999999999999999999
No 23
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=96.90 E-value=0.00045 Score=65.42 Aligned_cols=21 Identities=29% Similarity=0.653 Sum_probs=19.7
Q ss_pred CceeeeeeeEeccccCCCCcc
Q psy6814 38 DSLYFCFISITTIGLGDYIPG 58 (171)
Q Consensus 38 ~a~yF~~~~lTTiGyGd~~Pg 58 (171)
.|+||+++|+|||||||++|-
T Consensus 253 ~slYwai~TmtTVGYGDi~p~ 273 (823)
T PLN03192 253 SAIYWSITTMTTVGYGDLHAV 273 (823)
T ss_pred HHHHHHHHHHhhccCCCcCCC
Confidence 389999999999999999995
No 24
>KOG1420|consensus
Probab=96.31 E-value=0.0056 Score=55.98 Aligned_cols=78 Identities=24% Similarity=0.403 Sum_probs=51.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHhhhhccccCC---C---------CCCccCceeeeeeeEeccccCCCCccccccchhhhh
Q psy6814 1 LKIKFSYLGSLVITLSILFIFIPAYVFSSIE---P---------NWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVIT 68 (171)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~l~~~ 68 (171)
||++-+.++.=++.+++..++-+|..-+..| + .-+|.+..||..+|++|+||||+... ..+|++
T Consensus 242 lktsssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~-t~lgrl--- 317 (1103)
T KOG1420|consen 242 LKTSSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCK-TTLGRL--- 317 (1103)
T ss_pred HhccchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeeh-hhhhHH---
Confidence 5677777788788888766555554432221 2 34789999999999999999999986 444552
Q ss_pred HHHHHHhhhhhhhc
Q psy6814 69 LSILFIFIPAYVFS 82 (171)
Q Consensus 69 llli~i~iga~if~ 82 (171)
++..+++.|.++|.
T Consensus 318 fmvffil~glamfa 331 (1103)
T KOG1420|consen 318 FMVFFILGGLAMFA 331 (1103)
T ss_pred HHHHHHHHHHHHHH
Confidence 23334444544444
No 25
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=96.05 E-value=0.0025 Score=54.75 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=17.4
Q ss_pred CccCceeeeeeeEeccccCCCC
Q psy6814 35 SYLDSLYFCFISITTIGLGDYI 56 (171)
Q Consensus 35 ~~~~a~yF~~~~lTTiGyGd~~ 56 (171)
+|.+||+|+..|.||||||...
T Consensus 84 ~f~~aF~FSveT~tTIGYG~~~ 105 (336)
T PF01007_consen 84 SFTSAFLFSVETQTTIGYGSRY 105 (336)
T ss_dssp THHHHHHHHHHHHTT---SSSE
T ss_pred chhhheeEEEEEEEEeccCCcc
Confidence 8999999999999999999843
No 26
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=95.72 E-value=0.00062 Score=58.45 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=36.1
Q ss_pred ccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814 89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTF 145 (171)
Q Consensus 89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i 145 (171)
+|.+|++||+-|.||||||...|..+- |...++..+-.++|+.+.+..++.+
T Consensus 84 ~f~~aF~FSveT~tTIGYG~~~~~~~c-----~~a~~l~~~q~~~g~l~~a~~~Glv 135 (336)
T PF01007_consen 84 SFTSAFLFSVETQTTIGYGSRYPTPEC-----PYAIFLVTIQSLVGLLLDAFMTGLV 135 (336)
T ss_dssp THHHHHHHHHHHHTT---SSSEB-CSH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhheeEEEEEEEEeccCCcccCCCc-----chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999995444321 2225667788888988888877754
No 27
>KOG0501|consensus
Probab=94.99 E-value=0.01 Score=54.30 Aligned_cols=24 Identities=42% Similarity=0.948 Sum_probs=22.0
Q ss_pred CccCceeeeeeeEeccccCCCCcc
Q psy6814 35 SYLDSLYFCFISITTIGLGDYIPG 58 (171)
Q Consensus 35 ~~~~a~yF~~~~lTTiGyGd~~Pg 58 (171)
-|.+|+||+++.+|||||||++|.
T Consensus 423 ~YissLYfTMt~mttvGFGNiA~~ 446 (971)
T KOG0501|consen 423 AYISSLYFTMTCMTTVGFGNIAPN 446 (971)
T ss_pred eehhhhhhhhhhhhcccccccCCC
Confidence 467899999999999999999995
No 28
>KOG3193|consensus
Probab=94.83 E-value=0.035 Score=50.71 Aligned_cols=28 Identities=29% Similarity=0.737 Sum_probs=25.5
Q ss_pred CCCCCccCceeeeeeeEeccccCCCCcc
Q psy6814 31 EPNWSYLDSLYFCFISITTIGLGDYIPG 58 (171)
Q Consensus 31 ~~~w~~~~a~yF~~~~lTTiGyGd~~Pg 58 (171)
...-+...++||.++|++|+||||..|.
T Consensus 213 ~k~i~lf~s~y~v~vtfstvgygd~~pd 240 (1087)
T KOG3193|consen 213 GKRIDLFTSFYFVMVTFSTVGYGDWYPD 240 (1087)
T ss_pred CceeeeeeeEEEEEEEEeeccccccccc
Confidence 3467999999999999999999999995
No 29
>KOG3684|consensus
Probab=92.42 E-value=0.035 Score=49.30 Aligned_cols=47 Identities=28% Similarity=0.640 Sum_probs=35.3
Q ss_pred HHHHHhhhhccccCC-------CCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 17 ILFIFIPAYVFSSIE-------PNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 17 ~~~~~~~~~~~~~~~-------~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
+.++++.+-++..+| +.=++.++..+-.+|+-+|||||++|+ +.+|+
T Consensus 262 l~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~-TycGr 315 (489)
T KOG3684|consen 262 LSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPN-TYCGR 315 (489)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCC-ccccc
Confidence 345566665554332 233588999999999999999999998 88887
No 30
>KOG3827|consensus
Probab=92.17 E-value=0.32 Score=42.43 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.2
Q ss_pred CccCceeeeeeeEeccccCCCCc
Q psy6814 35 SYLDSLYFCFISITTIGLGDYIP 57 (171)
Q Consensus 35 ~~~~a~yF~~~~lTTiGyGd~~P 57 (171)
+|.+||.|++.|=||||||.-.+
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~v 134 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYV 134 (400)
T ss_pred chhhhheeeeeeeeeeecccccc
Confidence 78999999999999999997766
No 31
>KOG0500|consensus
Probab=87.26 E-value=0.24 Score=44.52 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=35.5
Q ss_pred cceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy6814 92 DSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAI 148 (171)
Q Consensus 92 da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~ 148 (171)
-++|||-.|+||+| |..|.....+ -.|.++=.++|+.+++..++.++++
T Consensus 186 ~S~YWStLTlTTiG--e~P~P~t~~e------y~F~I~d~LiGvliFAtIvG~VGsm 234 (536)
T KOG0500|consen 186 YSLYWSTLTLTTIG--EQPPPVTSSE------YAFVIVDTLIGVLIFATIVGNVGSM 234 (536)
T ss_pred HHHHHHhhhhhhcc--CCCCCCcCch------hhHHHHHHHHHHHHHhhhhccHhHH
Confidence 47899999999997 3322222221 5778888899999999998766654
No 32
>KOG0498|consensus
Probab=86.30 E-value=0.17 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.8
Q ss_pred cCceeeeeeeEeccccCCCCcc
Q psy6814 37 LDSLYFCFISITTIGLGDYIPG 58 (171)
Q Consensus 37 ~~a~yF~~~~lTTiGyGd~~Pg 58 (171)
.-|+||+++++||+||||.+|.
T Consensus 296 ~~aLyw~l~tLstvG~g~~~s~ 317 (727)
T KOG0498|consen 296 VYALYWGLSTLSTVGYGLVHAN 317 (727)
T ss_pred HHHHHHHhhHhhhccCCccCCC
Confidence 3479999999999999999994
No 33
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=82.25 E-value=0.12 Score=38.80 Aligned_cols=54 Identities=30% Similarity=0.461 Sum_probs=34.4
Q ss_pred ccccceeEEEEEEecccccccccCCCCCcccccchhhhh-hHHHHHHHHHHHHHHHH
Q psy6814 89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIV-SVYLILSLLFTMFVLKT 144 (171)
Q Consensus 89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~-~~~i~~Gl~~~~~~~~~ 144 (171)
++.+|+|+.+.++|+.|+||..|..... .++...++. .+.++.++.++.+.++.
T Consensus 145 ~~~~s~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~l~nlliav 199 (200)
T PF00520_consen 145 SFGESLYWLFQTMTGEGWGDVMPSCMSA--RSWLAVIFFISFIIIVSILLLNLLIAV 199 (200)
T ss_dssp SHHHHHHHHHHHHTTTTCCCCHHHHHHT--TSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCccccccccccc--cchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence 5678999999999999999999972100 011225555 44444555666665543
No 34
>KOG3827|consensus
Probab=78.55 E-value=4.2 Score=35.69 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=39.1
Q ss_pred ccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814 89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTF 145 (171)
Q Consensus 89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i 145 (171)
++.-|+=||+-|=||||||--.++..= |.-.+...+..++|+.+-+..++.+
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeC-----P~aI~ll~~Q~I~g~ii~afm~G~i 163 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEEC-----PEAIFLLVLQSILGVIINAFMVGAI 163 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccC-----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999998888753 2225666777778887777777644
No 35
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=76.57 E-value=0.52 Score=35.33 Aligned_cols=53 Identities=26% Similarity=0.394 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhccccCCC------------------CCCccCceeeeeeeEeccccCCCCcc
Q psy6814 6 SYLGSLVITLSILFIFIPAYVFSSIEP------------------NWSYLDSLYFCFISITTIGLGDYIPG 58 (171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~w~~~~a~yF~~~~lTTiGyGd~~Pg 58 (171)
.+...+...++..|-+++...+..... .-++.+|++..+.++|+.|+||..|.
T Consensus 98 ~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~ 168 (200)
T PF00520_consen 98 FKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGEGWGDVMPS 168 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHH
T ss_pred cccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccCCccccccc
Confidence 344444455555566666666644321 12789999999999999999999994
No 36
>KOG0499|consensus
Probab=71.29 E-value=1.3 Score=41.07 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=42.1
Q ss_pred cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q psy6814 88 WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPEL 151 (171)
Q Consensus 88 ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~~ 151 (171)
=.|.-++||+.-|++||| |.--|.+.- ..+|..+=.++|+.+++..++-+.+++..
T Consensus 402 n~YiRCyyfa~kt~~tiG-~~P~P~~~~-------E~Vf~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 402 NEYIRCYYFAVKTLITIG-GLPEPQTLF-------EIVFQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred CceeeehhhHHHHHHHhc-CCCCcchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367899999999999999 665555422 25666666778999999999877776543
No 37
>PF04694 Corona_3: Coronavirus ORF3 protein; InterPro: IPR006784 This family represents the Coronavirus ORF3 protein, also known as the X2A protein.
Probab=53.19 E-value=12 Score=23.65 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=16.7
Q ss_pred ccccceeEEEE---------EEeccccccccc
Q psy6814 89 SYLDSLYFCFI---------SITTIGLGDYIP 111 (171)
Q Consensus 89 s~~da~Yf~~i---------T~tTIGfGD~~P 111 (171)
+-+|+.||+++ -+--|||||-..
T Consensus 16 deld~~yfavtlkvef~tgkllVcigFGDTl~ 47 (60)
T PF04694_consen 16 DELDCAYFAVTLKVEFKTGKLLVCIGFGDTLF 47 (60)
T ss_pred hhhcceeEEEEEEEEEecCcEEEEEecchHHH
Confidence 45799999975 345689999543
No 38
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=46.39 E-value=8.3 Score=35.01 Aligned_cols=71 Identities=20% Similarity=0.354 Sum_probs=46.0
Q ss_pred HHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccC--CCCCcccccchhhhhhHHHHHH-HHHHHHHHH
Q psy6814 71 ILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPG--ESPQQEFKSLYKIIVSVYLILS-LLFTMFVLK 143 (171)
Q Consensus 71 li~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~--~~~~~~~~~~~~~~~~~~i~~G-l~~~~~~~~ 143 (171)
.+.+++++.+....+.+ ++.|+++=.+-++.|||-|=-.+. +.... .+|.-|+..++-++.| +-.+...+.
T Consensus 407 ~~~~~i~~~~l~~~~~~-~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~-~~~~~K~vli~~M~~GRleil~~lv~ 480 (499)
T COG0168 407 LLILIIGALILILTGYD-PFIDALFEVVSAFGTVGLSLGITGDLASNFA-LPPLAKLVLIALMLIGRLEILTVLVL 480 (499)
T ss_pred HHHHHHHHHHHHHhcCc-cHHHHHHHHHHHhhcCCCCCCCCCCCccccc-cCchHHHHHHHHHHhhccchhhHHHh
Confidence 44455666666666656 789999999999999998544333 22222 4455588888778877 444444443
No 39
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=45.39 E-value=2.1 Score=37.22 Aligned_cols=126 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHhhhhccccCCCCCCccCceeeeeeeEeccccCCCCcc----------------------
Q psy6814 1 LKIKFSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPG---------------------- 58 (171)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~Pg---------------------- 58 (171)
+++.+....-....+.++.-.+++..+...+. -++.||++-++++++|=|+.-...+
T Consensus 95 ~~~~i~~~~~~~~~iy~~lt~l~~~~~~~~g~-~~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iGg 173 (390)
T TIGR00933 95 LLPLIKNTAKFIFVIYLLGTILLAVRFVLTGW-MPLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGG 173 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHHh
Q ss_pred ---------c---cc-cch------hhhhHHHHHHhhhhhhhcccCCc--------cccccceeEEEEEEecccc--ccc
Q psy6814 59 ---------L---SY-LGS------LVITLSILFIFIPAYVFSSIEPN--------WSYLDSLYFCFISITTIGL--GDY 109 (171)
Q Consensus 59 ---------l---~~-~g~------l~~~llli~i~iga~if~~~e~~--------ws~~da~Yf~~iT~tTIGf--GD~ 109 (171)
+ +| ..+ .......+.+..+...+...|.+ ....|+.++...+.+|-|| +|.
T Consensus 174 ~gF~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~i~~~l~~~~~~~~~~~~~~~~~~~f~~~s~~~T~Gfst~d~ 253 (390)
T TIGR00933 174 LGFTVHYDVYLLLRKRVFKLSLDTKVRLFVTFLLLAIGFILFLLLERGNTLYSYSFGALLLSAFFQSSTLRTAGFSTIDF 253 (390)
T ss_pred cCHHHHHHHHHHcccCcceeecCccHHHHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHHHHHhhccCCCccccCh
Q ss_pred ccCCCCCcccccchhhhhhHHHHHH
Q psy6814 110 IPGESPQQEFKSLYKIIVSVYLILS 134 (171)
Q Consensus 110 ~P~~~~~~~~~~~~~~~~~~~i~~G 134 (171)
.--++.. +++.++.+++|
T Consensus 254 ~~~~~~~-------~lll~~lMfIG 271 (390)
T TIGR00933 254 AALPTAT-------LVLLLLLMFIG 271 (390)
T ss_pred hhcCHHH-------HHHHHHHHHHc
No 40
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=39.91 E-value=23 Score=23.29 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHH
Q psy6814 127 VSVYLILSLLFTMFVLKTFHAIPELK 152 (171)
Q Consensus 127 ~~~~i~~Gl~~~~~~~~~i~~~~~~~ 152 (171)
.-+|.-.|+.++++++..+..+.+.+
T Consensus 17 fyVWlA~~~tll~l~~l~v~sv~qrr 42 (67)
T COG3114 17 FYVWLAVGMTLLPLAVLVVHSVLQRR 42 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999988888776655
No 41
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=33.09 E-value=4.6 Score=29.26 Aligned_cols=52 Identities=13% Similarity=0.291 Sum_probs=34.7
Q ss_pred ccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy6814 89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAI 148 (171)
Q Consensus 89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~ 148 (171)
+..+++++++-++.. +-++..|.+..+ |++...|.+..+.+.+..-+.+...
T Consensus 44 ~~~~~~~~~~~~~~~-q~~~~~~~s~s~-------Ril~~~w~l~~lil~~~Yta~L~s~ 95 (148)
T PF00060_consen 44 SLSNSFWYTFGTLLQ-QGSSIRPRSWSG-------RILLAFWWLFSLILIASYTANLTSF 95 (148)
T ss_dssp HHHHHHHHCCCCCHH-HHH------HHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhcc-ccccccccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777766665 667777777665 9999999999998888887766653
No 42
>COG1006 MnhC Multisubunit Na+/H+ antiporter, MnhC subunit [Inorganic ion transport and metabolism]
Probab=32.83 E-value=1.3e+02 Score=21.97 Aligned_cols=29 Identities=7% Similarity=0.028 Sum_probs=20.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q psy6814 124 KIIVSVYLILSLLFTMFVLKTFHAIPELK 152 (171)
Q Consensus 124 ~~~~~~~i~~Gl~~~~~~~~~i~~~~~~~ 152 (171)
+.+..-=+++|++..+..+....+..++.
T Consensus 73 QALILTAIVIgfa~tal~L~l~~~~y~~~ 101 (115)
T COG1006 73 QALILTAIVIGFATTALALVLAYRAYKEY 101 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444457889999999888887776644
No 43
>PRK13664 hypothetical protein; Provisional
Probab=28.84 E-value=1.6e+02 Score=18.88 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcC
Q psy6814 131 LILSLLFTMFVLKTFHAIPELKIMKILSLRFNDPG 165 (171)
Q Consensus 131 i~~Gl~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 165 (171)
+++=+.++++.++.+-++.+..-+|++..+.+=|+
T Consensus 10 ilill~lvG~i~N~iK~l~RvD~Kkfl~nkp~LPP 44 (62)
T PRK13664 10 ILVLVFLVGVLLNVIKDLKRVDHKKFLANKPELPP 44 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHhcCCCCCCC
Confidence 33555666777888888888778888775554443
No 44
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=27.86 E-value=1.4e+02 Score=17.76 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHh
Q psy6814 128 SVYLILSLLFTMFVLKTFHAIPELK-IMKILS 158 (171)
Q Consensus 128 ~~~i~~Gl~~~~~~~~~i~~~~~~~-~~~~~~ 158 (171)
-+|.-.|++++.+....+....+.+ .++-.+
T Consensus 6 yVW~sYg~t~~~l~~l~~~~~~~~r~~~~~l~ 37 (46)
T PF04995_consen 6 YVWSSYGVTALVLAGLIVWSLRRRRRLRKELK 37 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666555554444 433333
No 45
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=27.63 E-value=37 Score=18.40 Aligned_cols=20 Identities=10% Similarity=0.012 Sum_probs=8.1
Q ss_pred HHHHHHHhhccCCcCCcCCC
Q psy6814 151 LKIMKILSLRFNDPGFYKNA 170 (171)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~ 170 (171)
.++.|+++++++......++
T Consensus 6 ~SLqRFLeKRK~R~~~~~PY 25 (27)
T PF09425_consen 6 ASLQRFLEKRKDRLAAKSPY 25 (27)
T ss_dssp HHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhccCCCC
Confidence 34889999988766555444
No 46
>KOG1052|consensus
Probab=25.35 E-value=78 Score=29.25 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=31.6
Q ss_pred eEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy6814 95 YFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIP 149 (171)
Q Consensus 95 Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~ 149 (171)
++++.++..-| +|..|.+..+ |++...|.++++.+.+...+.+.+..
T Consensus 387 ~~~~~~~~~q~-~~~~p~~~~~-------Rll~~~w~~~~lil~ssYTa~L~a~L 433 (656)
T KOG1052|consen 387 WLTVGSLLQQG-SDEIPRSLST-------RLLLGAWWLFVLILISSYTANLTAFL 433 (656)
T ss_pred hhhhHHHhccC-CCccccchhh-------hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333 3367777665 99999999999988888777766643
No 47
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=21.76 E-value=2.5e+02 Score=19.31 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=12.7
Q ss_pred cccccCCCCCcccccc
Q psy6814 107 GDYIPGESPQQEFKSL 122 (171)
Q Consensus 107 GD~~P~~~~~~~~~~~ 122 (171)
||.+|++++|.+.++.
T Consensus 33 g~vv~Gt~~sAP~~~~ 48 (85)
T PF07330_consen 33 GEVVPGTDPSAPANPR 48 (85)
T ss_pred CCcCCCCCCCCCCCch
Confidence 8899999998766553
Done!