Query psy6814
Match_columns 171
No_of_seqs 204 out of 1823
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:06:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ukm_A Potassium channel subfa 100.0 4.2E-33 1.4E-37 230.4 -0.9 134 32-165 90-278 (280)
2 3um7_A Potassium channel subfa 99.9 6.4E-30 2.2E-34 214.0 -1.9 117 32-150 112-284 (309)
3 3ouf_A Potassium channel prote 99.7 2.5E-18 8.5E-23 121.2 -0.6 82 66-155 10-92 (97)
4 3ldc_A Calcium-gated potassium 99.6 7.7E-18 2.6E-22 115.2 -1.5 75 66-148 6-80 (82)
5 2k1e_A Water soluble analogue 99.6 3.3E-17 1.1E-21 116.4 1.4 82 66-154 11-98 (103)
6 2q67_A Potassium channel prote 99.6 1.3E-17 4.5E-22 120.7 -1.8 77 66-150 27-103 (114)
7 3eff_K Voltage-gated potassium 99.6 1.7E-17 5.9E-22 123.5 -2.3 79 67-152 12-96 (139)
8 3vou_A ION transport 2 domain 99.6 2.3E-17 7.7E-22 124.2 -3.2 74 66-147 30-103 (148)
9 4h33_A LMO2059 protein; bilaye 99.6 3.8E-17 1.3E-21 121.8 -2.6 56 87-149 41-96 (137)
10 2a9h_A Voltage-gated potassium 99.6 1E-16 3.4E-21 122.0 -2.9 77 68-152 57-140 (155)
11 2ih3_C Voltage-gated potassium 99.5 3.5E-16 1.2E-20 114.4 -0.5 79 69-154 35-119 (122)
12 3pjs_K KCSA, voltage-gated pot 99.5 2.7E-16 9.3E-21 120.5 -3.9 73 69-148 41-119 (166)
13 1lnq_A MTHK channels, potassiu 99.4 1.5E-15 5.3E-20 126.8 -5.0 91 66-164 23-114 (336)
14 1orq_C Potassium channel; volt 99.3 8E-14 2.7E-18 110.3 -1.1 77 69-152 139-221 (223)
15 3um7_A Potassium channel subfa 99.3 1.5E-13 5.2E-18 114.8 -2.7 59 87-152 113-171 (309)
16 4gx0_A TRKA domain protein; me 99.2 8.3E-13 2.8E-17 117.3 -0.3 84 71-161 28-118 (565)
17 3ukm_A Potassium channel subfa 99.2 1.1E-12 3.6E-17 108.4 -2.4 58 86-150 90-147 (280)
18 3ldc_A Calcium-gated potassium 99.1 1.9E-12 6.7E-17 88.1 -1.8 53 10-64 4-56 (82)
19 3ouf_A Potassium channel prote 99.1 4.5E-12 1.5E-16 89.0 -0.0 55 8-64 6-60 (97)
20 3beh_A MLL3241 protein; transm 99.1 6.7E-12 2.3E-16 105.4 -0.6 76 71-153 137-218 (355)
21 3eff_K Voltage-gated potassium 99.1 1.2E-11 4.2E-16 91.7 0.8 55 9-64 8-68 (139)
22 2q67_A Potassium channel prote 99.1 1.5E-11 5E-16 88.7 -0.4 53 10-64 25-77 (114)
23 3vou_A ION transport 2 domain 99.0 2.6E-11 8.9E-16 90.9 0.6 54 9-64 27-80 (148)
24 4h33_A LMO2059 protein; bilaye 99.0 2.7E-11 9.3E-16 90.0 0.6 43 21-64 29-71 (137)
25 2k1e_A Water soluble analogue 99.0 1.2E-10 4E-15 82.3 2.5 52 12-64 11-68 (103)
26 1xl4_A Inward rectifier potass 99.0 3.7E-11 1.3E-15 100.1 -1.8 56 87-149 80-135 (301)
27 1p7b_A Integral membrane chann 98.9 7.1E-11 2.4E-15 99.6 -0.3 56 87-149 94-149 (333)
28 3pjs_K KCSA, voltage-gated pot 98.9 3.2E-11 1.1E-15 92.1 -2.6 52 12-64 38-95 (166)
29 2ih3_C Voltage-gated potassium 98.8 2.8E-10 9.5E-15 82.8 -0.5 48 16-64 36-89 (122)
30 2qks_A KIR3.1-prokaryotic KIR 98.8 1.5E-10 5.3E-15 97.1 -2.5 57 87-150 76-132 (321)
31 2r9r_B Paddle chimera voltage 98.8 4E-10 1.4E-14 99.8 -1.7 57 89-152 375-431 (514)
32 2a9h_A Voltage-gated potassium 98.8 6.9E-10 2.3E-14 84.1 -0.6 51 13-64 56-112 (155)
33 1lnq_A MTHK channels, potassiu 98.6 9E-10 3.1E-14 91.7 -4.2 51 12-64 23-73 (336)
34 1p7b_A Integral membrane chann 98.5 3.1E-08 1E-12 83.5 1.5 58 6-64 61-124 (333)
35 1orq_C Potassium channel; volt 98.4 2.8E-08 9.7E-13 78.2 0.4 47 17-64 141-193 (223)
36 1xl4_A Inward rectifier potass 98.4 4.5E-08 1.5E-12 81.4 -0.3 32 32-64 79-110 (301)
37 4gx0_A TRKA domain protein; me 98.3 5.1E-08 1.7E-12 86.4 -0.4 33 31-64 47-79 (565)
38 2qks_A KIR3.1-prokaryotic KIR 98.3 1E-07 3.4E-12 80.0 1.0 31 33-64 76-106 (321)
39 3sya_A G protein-activated inw 98.2 1.1E-07 3.9E-12 80.2 -0.6 54 89-147 91-144 (340)
40 3spc_A Inward-rectifier K+ cha 98.0 3.3E-07 1.1E-11 77.5 -1.6 54 89-147 94-147 (343)
41 3beh_A MLL3241 protein; transm 97.9 1.2E-06 4.1E-11 73.2 -0.8 30 34-64 160-189 (355)
42 2r9r_B Paddle chimera voltage 97.7 4.1E-06 1.4E-10 74.1 -0.5 30 34-64 374-403 (514)
43 3rvy_A ION transport protein; 97.7 3.3E-06 1.1E-10 68.7 -1.5 60 89-151 180-241 (285)
44 3sya_A G protein-activated inw 97.5 1.7E-05 5.8E-10 66.9 -0.2 24 34-57 90-113 (340)
45 3spc_A Inward-rectifier K+ cha 97.4 4.6E-05 1.6E-09 64.3 1.5 23 35-57 94-116 (343)
46 3rvy_A ION transport protein; 96.0 0.00084 2.9E-08 54.3 -0.7 50 9-58 152-205 (285)
47 3kg2_A Glutamate receptor 2; I 72.7 0.71 2.4E-05 41.6 -0.1 53 90-150 564-616 (823)
48 4dxw_A Navrh, ION transport pr 66.3 0.5 1.7E-05 36.4 -2.3 59 89-150 165-224 (229)
49 4dxw_A Navrh, ION transport pr 46.1 2.2 7.6E-05 32.7 -1.6 46 12-57 140-187 (229)
50 2knc_B Integrin beta-3; transm 29.6 72 0.0024 20.6 4.0 15 128-142 14-28 (79)
No 1
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.97 E-value=4.2e-33 Score=230.41 Aligned_cols=134 Identities=43% Similarity=0.812 Sum_probs=109.7
Q ss_pred CCCCccCceeeeeeeEeccccCCCCcc----------------------c--------------------cccch-----
Q psy6814 32 PNWSYLDSLYFCFISITTIGLGDYIPG----------------------L--------------------SYLGS----- 64 (171)
Q Consensus 32 ~~w~~~~a~yF~~~~lTTiGyGd~~Pg----------------------l--------------------~~~g~----- 64 (171)
++|+|.||+||+++|+|||||||++|. + ++++.
T Consensus 90 ~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 169 (280)
T 3ukm_A 90 WNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFHIRWGFSKQVV 169 (280)
T ss_dssp CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTC------CCHHH
T ss_pred CCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 579999999999999999999999992 0 11220
Q ss_pred -------hhhhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHH
Q psy6814 65 -------LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLF 137 (171)
Q Consensus 65 -------l~~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~ 137 (171)
+.+.++++++++++.+++..|++|++.||+|||++|+|||||||++|.+++++++.+.||+++++|+++|+++
T Consensus 170 ~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~ 249 (280)
T 3ukm_A 170 AIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIA 249 (280)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHH
Confidence 2234456777899999999887899999999999999999999999999999888888999999999999999
Q ss_pred HHHHHHHHHHhhHHH-HHHHHhhccCCcC
Q psy6814 138 TMFVLKTFHAIPELK-IMKILSLRFNDPG 165 (171)
Q Consensus 138 ~~~~~~~i~~~~~~~-~~~~~~~~~~~~~ 165 (171)
+++.++.+.++.+.+ +++.++++|+.++
T Consensus 250 ~~~~~~~i~~~~~~~~l~~~~~~~~~~~~ 278 (280)
T 3ukm_A 250 MLVVLETFCELHELKKFRKMFYVKKDKDE 278 (280)
T ss_dssp HHHHHHHHHTSHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 999999999987777 8888887775554
No 2
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.95 E-value=6.4e-30 Score=214.01 Aligned_cols=117 Identities=31% Similarity=0.648 Sum_probs=97.6
Q ss_pred CCCCccCceeeeeeeEeccccCCCCcc----------------------c----------------------cccc----
Q psy6814 32 PNWSYLDSLYFCFISITTIGLGDYIPG----------------------L----------------------SYLG---- 63 (171)
Q Consensus 32 ~~w~~~~a~yF~~~~lTTiGyGd~~Pg----------------------l----------------------~~~g---- 63 (171)
++|+|.||+||+++|+|||||||++|. + .+++
T Consensus 112 ~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~le~~~~~~~~~~~ 191 (309)
T 3um7_A 112 SAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPE 191 (309)
T ss_dssp -CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTC--CC
T ss_pred CCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccchh
Confidence 359999999999999999999999992 0 0111
Q ss_pred h--------hhhhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHH
Q psy6814 64 S--------LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSL 135 (171)
Q Consensus 64 ~--------l~~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl 135 (171)
+ ..+..+++++++++.+++..| +|++.||+|||++|+|||||||++|.++.++. +|.||+++++|++.|+
T Consensus 192 ~~~~~~~~l~~~~~~~~~l~~ga~~~~~~E-~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~-~~~y~~~~~~~il~Gl 269 (309)
T 3um7_A 192 LVRVLSAMLFLLIGCLLFVLTPTFVFCYME-DWSKLEAIYFVIVTLTTVGFGDYVAGADPRQD-SPAYQPLVWFWILLGL 269 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-CCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCC-CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHhheeccccCCCCCCCccccc-cchHHHHHHHHHHHHH
Confidence 0 112234567788999999988 99999999999999999999999999998865 4679999999999999
Q ss_pred HHHHHHHHHHHHhhH
Q psy6814 136 LFTMFVLKTFHAIPE 150 (171)
Q Consensus 136 ~~~~~~~~~i~~~~~ 150 (171)
+++++.++.+.+..+
T Consensus 270 ~~~a~~~~~i~~~~~ 284 (309)
T 3um7_A 270 AYFASVLTTIGNWLR 284 (309)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887654
No 3
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.67 E-value=2.5e-18 Score=121.24 Aligned_cols=82 Identities=24% Similarity=0.509 Sum_probs=70.7
Q ss_pred hhhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814 66 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTF 145 (171)
Q Consensus 66 ~~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i 145 (171)
.+..+.+.++.++..++..| +|++.||+||+++|+|||||||++|.++.+ |++++++++.|+.+++..++.+
T Consensus 10 ~~~~~~~~~~~g~~~~~~~e-~~~~~~a~yf~~~T~tTvGyGdi~P~t~~g-------r~~~~~~~~~G~~~~~~~i~~i 81 (97)
T 3ouf_A 10 LFVLTILTLISGTIFYSTVE-GLRPIDALYFSVVTLTTVGYGDFSPQTDFG-------KIFTILYIFIGIGLVFGFIHKL 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHTTCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHccCCCCCCCCCccH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888777 899999999999999999999999998776 9999999999999999999999
Q ss_pred HHhhHHH-HHH
Q psy6814 146 HAIPELK-IMK 155 (171)
Q Consensus 146 ~~~~~~~-~~~ 155 (171)
.+..+.+ +++
T Consensus 82 ~~~~~~~~~~~ 92 (97)
T 3ouf_A 82 AVNVQLPSILS 92 (97)
T ss_dssp HHHTHHHHHHH
T ss_pred HHHHhHHHHHH
Confidence 9877654 444
No 4
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.64 E-value=7.7e-18 Score=115.22 Aligned_cols=75 Identities=24% Similarity=0.399 Sum_probs=67.0
Q ss_pred hhhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814 66 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTF 145 (171)
Q Consensus 66 ~~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i 145 (171)
.+.+++..++.++..++..| +|++.||+||+++|+|||||||++|.++.+ |++++++++.|+..+++.++.+
T Consensus 6 ~~~l~~~~~~~g~~~~~~~e-~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~-------r~~~~~~~~~G~~~~~~~~~~i 77 (82)
T 3ldc_A 6 ILLLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSPHTPLG-------MYFTCTLIVLGIGTFAVAVERL 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHTTCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHhcccCCCCCCCCCccH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677788999999888 999999999999999999999999998766 9999999999999999999988
Q ss_pred HHh
Q psy6814 146 HAI 148 (171)
Q Consensus 146 ~~~ 148 (171)
.+.
T Consensus 78 ~~~ 80 (82)
T 3ldc_A 78 LEF 80 (82)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 5
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.63 E-value=3.3e-17 Score=116.41 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=69.7
Q ss_pred hhhHHHHHHhhhhhhhcccCCc------cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHH
Q psy6814 66 VITLSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTM 139 (171)
Q Consensus 66 ~~~llli~i~iga~if~~~e~~------ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~ 139 (171)
.+..+++++++++.+++..|+. +++.||+||+++|+|||||||++|.+..+ |++++++++.|+.+++
T Consensus 11 ~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g-------r~~~~~~~l~G~~~~~ 83 (103)
T 2k1e_A 11 AEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEG-------RKVAEQVMKAGIEVFA 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSC-------THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhH-------HHHHHHHHHHHHHHHH
Confidence 3445566777888888888832 48999999999999999999999999877 9999999999999999
Q ss_pred HHHHHHHHhhHHHHH
Q psy6814 140 FVLKTFHAIPELKIM 154 (171)
Q Consensus 140 ~~~~~i~~~~~~~~~ 154 (171)
+.++.+.+...++.+
T Consensus 84 ~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 84 LVTAALATDFVRREE 98 (103)
T ss_dssp HTHHHHHTTGGGHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999987765533
No 6
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.62 E-value=1.3e-17 Score=120.72 Aligned_cols=77 Identities=22% Similarity=0.481 Sum_probs=66.8
Q ss_pred hhhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814 66 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTF 145 (171)
Q Consensus 66 ~~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i 145 (171)
.+.++..++..|+.++...| +|++.||+||+++|+|||||||++|.++.+ |++++++++.|+.+++..++.+
T Consensus 27 ~~~~~~~~~~~g~~~~~~~e-~~~~~~a~y~~~~T~tTvGyGdi~P~t~~g-------r~~~~~~~~~G~~~~~~~~~~l 98 (114)
T 2q67_A 27 LFVLTILTLISGTIFYSTVE-GLRPIDALYFSVVTLTTVGAGNFSPQTDFG-------KIFTILYIFIGIGLVFGFIHKL 98 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHTSCCCSSCCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhcceeCCCCccCCHhH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566778888888777 899999999999999999999999998766 9999999999999999999988
Q ss_pred HHhhH
Q psy6814 146 HAIPE 150 (171)
Q Consensus 146 ~~~~~ 150 (171)
.+..+
T Consensus 99 ~~~~~ 103 (114)
T 2q67_A 99 AVNVQ 103 (114)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 87554
No 7
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.61 E-value=1.7e-17 Score=123.49 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=67.6
Q ss_pred hhHHHHHHhhhhhhhcccCCc------cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHH
Q psy6814 67 ITLSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMF 140 (171)
Q Consensus 67 ~~llli~i~iga~if~~~e~~------ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~ 140 (171)
+..+++++++++.+++..|++ |++.||+||+++|+|||||||++|.+..+ |+++++++++|++++++
T Consensus 12 ~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~-------r~~~~~~~~~G~~~~~~ 84 (139)
T 3eff_K 12 TVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG-------RLVAVVVMVAGITSFGL 84 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCH-------HHHHHHHHHHHHHHHHH
Confidence 445566777888888888843 99999999999999999999999998776 99999999999999999
Q ss_pred HHHHHHHhhHHH
Q psy6814 141 VLKTFHAIPELK 152 (171)
Q Consensus 141 ~~~~i~~~~~~~ 152 (171)
.++.+.+...++
T Consensus 85 ~~~~i~~~~~~~ 96 (139)
T 3eff_K 85 VTAALATWFVGR 96 (139)
T ss_dssp HHHHHTTTTTHH
T ss_pred HHHHHHHHHHHH
Confidence 999888754333
No 8
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.59 E-value=2.3e-17 Score=124.23 Aligned_cols=74 Identities=22% Similarity=0.475 Sum_probs=64.8
Q ss_pred hhhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814 66 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTF 145 (171)
Q Consensus 66 ~~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i 145 (171)
.+.+++++++.++..+...| +|++.||+||+++|+|||||||++|.+..+ |++++++++.|+++++..++.+
T Consensus 30 ~~~~~~~~~~~g~~~~~~~e-~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~-------r~~~~~~~~~g~~~~~~~~~~~ 101 (148)
T 3vou_A 30 LFVLTFLTLTSGTIFYSTVE-GLRPLDALYFSVVTLTTVGDGNFSPQTDFG-------KVFTILYIFIGIGLVFGFIHKL 101 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHTTCCCSSCCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHccCCCCCCCCCccH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888888777 899999999999999999999999998766 9999999999999999999887
Q ss_pred HH
Q psy6814 146 HA 147 (171)
Q Consensus 146 ~~ 147 (171)
.+
T Consensus 102 ~~ 103 (148)
T 3vou_A 102 AV 103 (148)
T ss_dssp HC
T ss_pred HH
Confidence 75
No 9
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.58 E-value=3.8e-17 Score=121.79 Aligned_cols=56 Identities=23% Similarity=0.495 Sum_probs=52.5
Q ss_pred ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy6814 87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIP 149 (171)
Q Consensus 87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~ 149 (171)
.|++.||+||+++|+|||||||++|.+..| |++++++++.|+++++..++.+.+..
T Consensus 41 ~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g-------r~~~~~~~~~g~~~~~~~~~~i~~~~ 96 (137)
T 4h33_A 41 INNYPDALWWAIVTATTVGYGDIVPVTPIG-------RILASIMMLFGIAFIGMITSTITNFF 96 (137)
T ss_dssp CCSHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCCHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999998776 99999999999999999999988754
No 10
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.55 E-value=1e-16 Score=121.99 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=66.0
Q ss_pred hHHHHHHhhhhhhhcccCCcc-------ccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHH
Q psy6814 68 TLSILFIFIPAYVFSSIEPNW-------SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMF 140 (171)
Q Consensus 68 ~llli~i~iga~if~~~e~~w-------s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~ 140 (171)
..+++++++++.+++..| +| ++.||+||+++|+|||||||++|.+..| |++++++++.|+.++++
T Consensus 57 ~~~~~~i~~~a~~~~~~E-~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~g-------r~~~~~~~l~Gv~~~a~ 128 (155)
T 2a9h_A 57 VLLVIVLLAGSYLAVLAE-RGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWG-------RCVAVVVMVAGITSYGL 128 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-ccCCCCccCcccceeheeeeeeecccCCCCCCCChhH-------HHHHHHHHHHHHHHHHH
Confidence 344556677888888777 55 8999999999999999999999998766 99999999999999999
Q ss_pred HHHHHHHhhHHH
Q psy6814 141 VLKTFHAIPELK 152 (171)
Q Consensus 141 ~~~~i~~~~~~~ 152 (171)
.++.+.+...++
T Consensus 129 ~~~~i~~~~~~~ 140 (155)
T 2a9h_A 129 VFAAVATWFVGR 140 (155)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH
Confidence 999988866544
No 11
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.54 E-value=3.5e-16 Score=114.38 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=66.7
Q ss_pred HHHHHHhhhhhhhcccCCc------cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHH
Q psy6814 69 LSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVL 142 (171)
Q Consensus 69 llli~i~iga~if~~~e~~------ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~ 142 (171)
.+.+.+.+++.+++..|++ |++.||+||+++|+|||||||++|.++.| |++++++++.|+..+++.+
T Consensus 35 ~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g-------r~~~~~~~~~Gi~~~~~~~ 107 (122)
T 2ih3_C 35 LLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWG-------RLVAVVVMVAGITSFGLVT 107 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccH-------HHHHHHHHHHHHHHHHHHH
Confidence 3445556777777777742 89999999999999999999999998776 9999999999999999999
Q ss_pred HHHHHhhHHHHH
Q psy6814 143 KTFHAIPELKIM 154 (171)
Q Consensus 143 ~~i~~~~~~~~~ 154 (171)
+.+.+..+++.+
T Consensus 108 ~~i~~~~~~~~~ 119 (122)
T 2ih3_C 108 AALATWFVGREQ 119 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999987775543
No 12
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.51 E-value=2.7e-16 Score=120.53 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=63.2
Q ss_pred HHHHHHhhhhhhhcccCCc------cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHH
Q psy6814 69 LSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVL 142 (171)
Q Consensus 69 llli~i~iga~if~~~e~~------ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~ 142 (171)
.+++++++++.+++..|++ |++.||+||+++|+|||||||++|.+..+ |+++++++++|++++++.+
T Consensus 41 ~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~-------r~~~~~~~l~G~~~~~~~~ 113 (166)
T 3pjs_K 41 LLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG-------RLVAVVVMVAGITSFGLVT 113 (166)
T ss_dssp SSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTT-------TTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhH-------HHHHHHHHHHHHHHHHHHH
Confidence 3455667778888887742 99999999999999999999999999887 9999999999999999999
Q ss_pred HHHHHh
Q psy6814 143 KTFHAI 148 (171)
Q Consensus 143 ~~i~~~ 148 (171)
+.+.+.
T Consensus 114 ~~i~~~ 119 (166)
T 3pjs_K 114 AALATW 119 (166)
T ss_dssp TTSSSS
T ss_pred HHHHHH
Confidence 877653
No 13
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.43 E-value=1.5e-15 Score=126.76 Aligned_cols=91 Identities=23% Similarity=0.333 Sum_probs=67.2
Q ss_pred hhhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814 66 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTF 145 (171)
Q Consensus 66 ~~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i 145 (171)
.+.+++++++.++.+|+..| +|++.||+||+++|+|||||||++|.+..+ |++++++++.|+.++++.++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~e-~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~-------r~~~~~~~~~g~~~~~~~~~~~ 94 (336)
T 1lnq_A 23 ILLLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSPSTPLG-------MYFTVTLIVLGIGTFAVAVERL 94 (336)
T ss_dssp STTTTTTSHHHHTTTTTTSS-SCCSSTTHHHHHHHHTTCCCSSCCCCCSSH-------HHHHTHHHHTTSTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHhhcccCCCCCCCCcCH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566778888888888 899999999999999999999999998776 9999999999999999999999
Q ss_pred HHhhHHH-HHHHHhhccCCc
Q psy6814 146 HAIPELK-IMKILSLRFNDP 164 (171)
Q Consensus 146 ~~~~~~~-~~~~~~~~~~~~ 164 (171)
.+....+ .++..+++++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~ 114 (336)
T 1lnq_A 95 LEFLINREQMKLMGLIDVAK 114 (336)
T ss_dssp TTTC----------------
T ss_pred HHHHHHHHHHHHHhhhhhcc
Confidence 9865554 666666655543
No 14
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.33 E-value=8e-14 Score=110.30 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=65.4
Q ss_pred HHHHHHhhhhhhhcccCCc------cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHH
Q psy6814 69 LSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVL 142 (171)
Q Consensus 69 llli~i~iga~if~~~e~~------ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~ 142 (171)
.+.+.+.+++..++..|++ |++.||+||+++|+|||||||++|.+..| |++++++++.|+.++++.+
T Consensus 139 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~-------~~~~~~~~~~G~~~~~~~i 211 (223)
T 1orq_C 139 AVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIG-------KVIGIAVMLTGISALTLLI 211 (223)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhH-------HHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777742 89999999999999999999999998666 9999999999999999999
Q ss_pred HHHHHhhHHH
Q psy6814 143 KTFHAIPELK 152 (171)
Q Consensus 143 ~~i~~~~~~~ 152 (171)
+.+.+..+++
T Consensus 212 ~~i~~~~~~~ 221 (223)
T 1orq_C 212 GTVSNMFQKI 221 (223)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887754
No 15
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.27 E-value=1.5e-13 Score=114.82 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=54.3
Q ss_pred ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q psy6814 87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPELK 152 (171)
Q Consensus 87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~~~ 152 (171)
+|++.||+||+++|+|||||||++|.+..| |+++++|+++|+.+++..++.+.+.....
T Consensus 113 ~w~~~~a~yf~~~t~tTvGYGdi~P~T~~g-------k~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 113 AWDLGSAFFFSGTIITTIGYGNVALRTDAG-------RLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp CCSHHHHHHHHHHHHTSCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhhhHhhheeeeecccCCCCCCCccc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999877 99999999999999999998888765443
No 16
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.22 E-value=8.3e-13 Score=117.25 Aligned_cols=84 Identities=19% Similarity=0.373 Sum_probs=63.3
Q ss_pred HHHHhhhhhhhcc----cCC-ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHH-
Q psy6814 71 ILFIFIPAYVFSS----IEP-NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKT- 144 (171)
Q Consensus 71 li~i~iga~if~~----~e~-~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~- 144 (171)
++.+++++.+|+. .|+ +|+|.||+||+++|+|||||||++|.+..+ |++++++++.|+.++++.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~-------~~~~~~~~~~g~~~~~~~~~~~ 100 (565)
T 4gx0_A 28 LVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAG-------YLFASIVTVSGVIFLDIILPFG 100 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeeecCCCcCCCCccH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443 442 399999999999999999999999998766 999999999999999999987
Q ss_pred HHHhhHHH-HHHHHhhcc
Q psy6814 145 FHAIPELK-IMKILSLRF 161 (171)
Q Consensus 145 i~~~~~~~-~~~~~~~~~ 161 (171)
+.+..... +++..+.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~ 118 (565)
T 4gx0_A 101 FVSMFLAPWIERRLRYHP 118 (565)
T ss_dssp HHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 55544434 555555443
No 17
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.17 E-value=1.1e-12 Score=108.36 Aligned_cols=58 Identities=22% Similarity=0.475 Sum_probs=53.3
Q ss_pred CccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhH
Q psy6814 86 PNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPE 150 (171)
Q Consensus 86 ~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~ 150 (171)
++|++.||+||+++|+|||||||++|.++.| |+++++|+++|+.++...++.+.+...
T Consensus 90 ~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~G-------k~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 90 WNWDFTSALFFASTVLSTTGYGHTVPLSDGG-------KAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhcchhheeeeeeccccCCcCCCCchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999877 999999999999999999988876443
No 18
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.14 E-value=1.9e-12 Score=88.14 Aligned_cols=53 Identities=32% Similarity=0.516 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 10 SLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
+.++.+++.++..++..++. .|+|++.||+||+++|+|||||||++|. +..||
T Consensus 4 ~~~~~l~~~~~~~g~~~~~~-~e~~~~~~a~yf~~~T~tTvGyGdi~P~-t~~~r 56 (82)
T 3ldc_A 4 TRILLLVLAVIIYGTAGFHF-IEGESWTVSLYWTFVTIATVGYGDYSPH-TPLGM 56 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTTCCCCSSCCC-SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHhcccCCCCCCCC-CccHH
Confidence 45566666778888988876 4799999999999999999999999996 55556
No 19
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.13 E-value=4.5e-12 Score=88.98 Aligned_cols=55 Identities=27% Similarity=0.544 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 8 LGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
.+..++.++++++..|+..+.. .|+|++.||+||+++|+|||||||++|. +..||
T Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~-~e~~~~~~a~yf~~~T~tTvGyGdi~P~-t~~gr 60 (97)
T 3ouf_A 6 EFQVLFVLTILTLISGTIFYST-VEGLRPIDALYFSVVTLTTVGYGDFSPQ-TDFGK 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHTTCCCCSSCCC-SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHccCCCCCCCC-CccHH
Confidence 4455566666777888888875 5789999999999999999999999996 55555
No 20
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.10 E-value=6.7e-12 Score=105.36 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=62.2
Q ss_pred HHHHhhhhhhhcccCCc------cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHH
Q psy6814 71 ILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKT 144 (171)
Q Consensus 71 li~i~iga~if~~~e~~------ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~ 144 (171)
++.+.+++.+++..|++ .++.||+||+++|+||+||||+.|.+..+ |++++++++.|+.++++.++.
T Consensus 137 ~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~-------~~~~~~~~~~g~~~~~~~~~~ 209 (355)
T 3beh_A 137 GVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAG-------RVLAGAVMMSGIGIFGLWAGI 209 (355)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666621 27899999999999999999999998766 999999999999999999998
Q ss_pred HHHhhHHHH
Q psy6814 145 FHAIPELKI 153 (171)
Q Consensus 145 i~~~~~~~~ 153 (171)
+.+..+++.
T Consensus 210 i~~~~~~~~ 218 (355)
T 3beh_A 210 LATGFYQEV 218 (355)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887666553
No 21
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.09 E-value=1.2e-11 Score=91.66 Aligned_cols=55 Identities=22% Similarity=0.424 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCC------CCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 9 GSLVITLSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~------w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
+..++.++++++++++..+...+.+ |++.||+||+++|+|||||||++|. +..|+
T Consensus 8 ~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~-t~~~r 68 (139)
T 3eff_K 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPV-TLWGR 68 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCC-SSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCC-CcCHH
Confidence 3444555556677777777655432 9999999999999999999999996 55555
No 22
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.05 E-value=1.5e-11 Score=88.75 Aligned_cols=53 Identities=26% Similarity=0.591 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 10 SLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
..++.++++++.+|+..+.. .|+|++.||+||+++|+|||||||++|. +..|+
T Consensus 25 ~~~~~~~~~~~~~g~~~~~~-~e~~~~~~a~y~~~~T~tTvGyGdi~P~-t~~gr 77 (114)
T 2q67_A 25 QVLFVLTILTLISGTIFYST-VEGLRPIDALYFSVVTLTTVGAGNFSPQ-TDFGK 77 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHTSCCCSSCCCC-SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHhcceeCCCCccC-CHhHH
Confidence 44555666777888888875 4789999999999999999999999996 55555
No 23
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.04 E-value=2.6e-11 Score=90.89 Aligned_cols=54 Identities=26% Similarity=0.500 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 9 GSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
+.+++.++++++..|+..+.. .|+|++.||+||+++|+|||||||++|. +..|+
T Consensus 27 ~~~~~~~~~~~~~~g~~~~~~-~e~~~~~~a~y~~~~t~tTvGyGd~~p~-t~~~r 80 (148)
T 3vou_A 27 FQVLFVLTFLTLTSGTIFYST-VEGLRPLDALYFSVVTLTTVGDGNFSPQ-TDFGK 80 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHTTCCCSSCCCC-SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHccCCCCCCCC-CccHH
Confidence 344555666777888888775 5789999999999999999999999996 44445
No 24
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.04 E-value=2.7e-11 Score=89.95 Aligned_cols=43 Identities=28% Similarity=0.513 Sum_probs=34.1
Q ss_pred HhhhhccccCCCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 21 FIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 21 ~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
..++..+...++.|++.||+||+++|+|||||||++|. +..|+
T Consensus 29 ~~~~~~~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~-t~~gr 71 (137)
T 4h33_A 29 IIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPV-TPIGR 71 (137)
T ss_dssp HTHHHHHHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCC-SHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcccCCCCCCC-CHhHH
Confidence 33444444456789999999999999999999999996 55555
No 25
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.00 E-value=1.2e-10 Score=82.35 Aligned_cols=52 Identities=21% Similarity=0.186 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhhhccccCCC------CCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 12 VITLSILFIFIPAYVFSSIEP------NWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~------~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
.+.++++++++++..+...|. .|++.||+||+++|+|||||||++|. +..||
T Consensus 11 ~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~-t~~gr 68 (103)
T 2k1e_A 11 AEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPV-TEEGR 68 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCC-SSSCT
T ss_pred HHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCC-ChhHH
Confidence 334444556666666654322 25999999999999999999999996 55566
No 26
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.95 E-value=3.7e-11 Score=100.06 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=50.2
Q ss_pred ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy6814 87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIP 149 (171)
Q Consensus 87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~ 149 (171)
.+++.||+||+++|+|||||||++|.+..+ |++++++++.|+.++++.++.+.+..
T Consensus 80 ~~s~~~a~yfs~vT~tTvGYGDi~P~t~~g-------r~~~~~~~l~G~~~~a~~~g~v~~~~ 135 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIGYGKLIPIGPLA-------NTLVTLEALCGMLGLAVAASLIYARF 135 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCCSSSCCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhhhheeccCCCCCcCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999999988665 99999999999999999988766544
No 27
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.95 E-value=7.1e-11 Score=99.61 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=49.9
Q ss_pred ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy6814 87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIP 149 (171)
Q Consensus 87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~ 149 (171)
.+++.||+||+++|+|||||||++|.+..+ |++++++++.|+.++++.++.+....
T Consensus 94 ~~s~~~a~yfs~vT~tTVGYGDi~P~t~~g-------r~~~~~~~l~G~~~~a~~ig~i~~~~ 149 (333)
T 1p7b_A 94 PPGFVGAFFFSVETLATVGYGDMHPQTVYA-------HAIATLEIFVGMSGIALSTGLVFARF 149 (333)
T ss_dssp SSSTHHHHHHHTTTTTTCCCSCCCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHhHhhhheeeeecCCCCCcCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999998665 99999999999999999998776543
No 28
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.93 E-value=3.2e-11 Score=92.13 Aligned_cols=52 Identities=23% Similarity=0.450 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhhhccccCCCC------CCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 12 VITLSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~------w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
++.++++++++++..+...+.+ |++.||+||+++|+|||||||++|. +..|+
T Consensus 38 ~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~-t~~~r 95 (166)
T 3pjs_K 38 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPV-TLWGR 95 (166)
T ss_dssp TSSSSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCC-SSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCC-CHhHH
Confidence 3344456667777777655432 9999999999999999999999996 55566
No 29
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=98.83 E-value=2.8e-10 Score=82.83 Aligned_cols=48 Identities=21% Similarity=0.399 Sum_probs=35.0
Q ss_pred HHHHHHhhhhccccCC------CCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 16 SILFIFIPAYVFSSIE------PNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 16 ~~~~~~~~~~~~~~~~------~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
+++.+.+++..++..| +.|++.||+||+++|+|||||||++|. +..|+
T Consensus 36 ~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~-t~~gr 89 (122)
T 2ih3_C 36 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPV-TLWGR 89 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCC-SHHHH
T ss_pred HHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCC-CccHH
Confidence 3344455555554332 239999999999999999999999996 44555
No 30
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.82 E-value=1.5e-10 Score=97.12 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=51.1
Q ss_pred ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhH
Q psy6814 87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPE 150 (171)
Q Consensus 87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~ 150 (171)
+|++.||+||+++|+|||||||+.|.+..+ |++++++++.|+.++++.++.+.+...
T Consensus 76 ~~s~~~a~y~s~vT~tTVGYGDi~P~t~~g-------r~~~~~~~l~G~~~~a~~~g~i~~~~~ 132 (321)
T 2qks_A 76 PAGFGGAFFFSVETLATVGYGDMHPQTVYA-------HWIATLEIFVGMSSIALATGCAFIKMS 132 (321)
T ss_dssp STTHHHHHHHHHHHHTTCCCCSSCBCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhheeeeeeEEeccccCCCcCcccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999998766 999999999999999999987775443
No 31
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.77 E-value=4e-10 Score=99.82 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=51.0
Q ss_pred ccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q psy6814 89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPELK 152 (171)
Q Consensus 89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~~~ 152 (171)
++.||+||+++|+|||||||+.|.+..| |++++++++.|+.++++.++.+.+..+..
T Consensus 375 s~~~a~y~~~vT~TTvGYGDi~P~t~~g-------r~f~~~~~l~G~~~l~l~iavI~~~f~~~ 431 (514)
T 2r9r_B 375 SIPDAFWWAVVSMTTVGYGDMVPTTIGG-------KIVGSLCAIAGVLTIALPVPVIVSNFNYF 431 (514)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred chhhhhheeeeEEEecccCCCCCCCcch-------HhhehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999998665 89999999999999999999888755543
No 32
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=98.76 E-value=6.9e-10 Score=84.11 Aligned_cols=51 Identities=27% Similarity=0.473 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhhhccccCCC------CCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 13 ITLSILFIFIPAYVFSSIEP------NWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~------~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
+.++++++++++..++..|. .+++.||+||+++|+|||||||++|. +..|+
T Consensus 56 ~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~-t~~gr 112 (155)
T 2a9h_A 56 TVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPV-TLWGR 112 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCC-SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCC-ChhHH
Confidence 33444556667766654322 24899999999999999999999996 55555
No 33
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.61 E-value=9e-10 Score=91.66 Aligned_cols=51 Identities=35% Similarity=0.597 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhhccccCCCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 12 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
.+.++++++++++..+... |+|+|.+|+||+++|+|||||||++|. +..|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~-e~~~~~~a~y~~~~t~tTvGyGd~~p~-t~~~r 73 (336)
T 1lnq_A 23 ILLLVLAVIIYGTAGFHFI-EGESWTVSLYWTFVTIATVGYGDYSPS-TPLGM 73 (336)
T ss_dssp STTTTTTSHHHHTTTTTTS-SSCCSSTTHHHHHHHHTTCCCSSCCCC-CSSHH
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHhhcccCCCCCCC-CcCHH
Confidence 3344556778888888754 789999999999999999999999996 55555
No 34
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.47 E-value=3.1e-08 Score=83.51 Aligned_cols=58 Identities=14% Similarity=0.273 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhccccCC------CCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 6 SYLGSLVITLSILFIFIPAYVFSSIE------PNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
..++.+.+.++++.+++.+.++.... +.++|.+|+||+++|+|||||||++|. ...|+
T Consensus 61 ~~ll~~~~~~~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~-t~~gr 124 (333)
T 1p7b_A 61 PVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQ-TVYAH 124 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCC-SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCC-CHHHH
Confidence 33444444444444455566654322 257999999999999999999999995 44455
No 35
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=98.44 E-value=2.8e-08 Score=78.16 Aligned_cols=47 Identities=28% Similarity=0.556 Sum_probs=34.3
Q ss_pred HHHHHhhhhccccCCC------CCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 17 ILFIFIPAYVFSSIEP------NWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 17 ~~~~~~~~~~~~~~~~------~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
++.+.+++..++..|+ .|++.+|+||+++|+||+||||++|. +..|+
T Consensus 141 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~-t~~~~ 193 (223)
T 1orq_C 141 MLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPA-TPIGK 193 (223)
T ss_dssp HHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCC-SHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCC-CHhHH
Confidence 3344445555544333 28999999999999999999999996 44455
No 36
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.36 E-value=4.5e-08 Score=81.38 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=27.5
Q ss_pred CCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 32 PNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 32 ~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
+.|++.+|+||+++|+|||||||++|. ...|+
T Consensus 79 ~~~s~~~a~yfs~vT~tTvGYGDi~P~-t~~gr 110 (301)
T 1xl4_A 79 RPGSFTDAFFFSVQTMATIGYGKLIPI-GPLAN 110 (301)
T ss_dssp CTTCHHHHHHHHHHHHTTCCCSSSCCC-HHHHH
T ss_pred CcCCHHHHHHHhhhheeccCCCCCcCC-CHHHH
Confidence 358999999999999999999999995 44445
No 37
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.34 E-value=5.1e-08 Score=86.39 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=28.7
Q ss_pred CCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 31 EPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 31 ~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
.+.|+|.+|+||+++|+|||||||++|. +..|+
T Consensus 47 ~~~~~~~~~~y~~~~t~tTvGygd~~p~-~~~~~ 79 (565)
T 4gx0_A 47 GRAYSFMAGIYWTITVMTTLGFGDITFE-SDAGY 79 (565)
T ss_dssp CCCCCHHHHHHHHHHHHTTCCCCSSCCC-SHHHH
T ss_pred CCCCchhhhhheeeeeeeeecCCCcCCC-CccHH
Confidence 4569999999999999999999999996 55555
No 38
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.32 E-value=1e-07 Score=79.95 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=27.3
Q ss_pred CCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 33 NWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 33 ~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
.|+|.+|+||+++|+|||||||++|. ...|+
T Consensus 76 ~~s~~~a~y~s~vT~tTVGYGDi~P~-t~~gr 106 (321)
T 2qks_A 76 PAGFGGAFFFSVETLATVGYGDMHPQ-TVYAH 106 (321)
T ss_dssp STTHHHHHHHHHHHHTTCCCCSSCBC-SHHHH
T ss_pred CcchhheeeeeeEEeccccCCCcCcc-cHHHH
Confidence 68999999999999999999999995 44445
No 39
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.23 E-value=1.1e-07 Score=80.21 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=46.6
Q ss_pred ccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6814 89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA 147 (171)
Q Consensus 89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~ 147 (171)
++.|++||+++|+|||||||+.|.++- |..++++.+.++.|+.+.+...+.+..
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~-----~~g~~l~~~~~l~G~~l~a~~~giv~a 144 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKC-----PEGIILLLIQSVLGSIVNAFMVGCMFV 144 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999998532 234899999999999999998886654
No 40
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.04 E-value=3.3e-07 Score=77.50 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=45.3
Q ss_pred ccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6814 89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA 147 (171)
Q Consensus 89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~ 147 (171)
++.|++||+++|+|||||||..|...- |..++++.+.++.|+.+.+...+.+..
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~-----~~~~~l~~~~~l~G~~l~a~~~giv~a 147 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEEC-----PLAVFMVVVQSIVGCIIDSFMIGAIMA 147 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999986321 334899999999999999998876553
No 41
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=97.89 E-value=1.2e-06 Score=73.20 Aligned_cols=30 Identities=30% Similarity=0.647 Sum_probs=26.2
Q ss_pred CCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 34 WSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 34 w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
.++.+|+||+++|+||+||||+.|. +..|+
T Consensus 160 ~~~~~s~y~~~~t~ttvGygd~~p~-t~~~~ 189 (355)
T 3beh_A 160 GSIPQAMWWAVVTLSTTGYGDTIPQ-SFAGR 189 (355)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCC-SHHHH
T ss_pred ccHHHHHHHHHhheeecCCCCCCCC-ChhHH
Confidence 3899999999999999999999996 44455
No 42
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=97.71 E-value=4.1e-06 Score=74.11 Aligned_cols=30 Identities=33% Similarity=0.629 Sum_probs=26.2
Q ss_pred CCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 34 WSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 34 w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
.++.+|+||+++|+||+||||+.|. ...|+
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~-t~~gr 403 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPT-TIGGK 403 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCC-SHHHH
T ss_pred cchhhhhheeeeEEEecccCCCCCC-CcchH
Confidence 4899999999999999999999995 44455
No 43
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.67 E-value=3.3e-06 Score=68.66 Aligned_cols=60 Identities=10% Similarity=0.176 Sum_probs=47.7
Q ss_pred ccccceeEEEEEEeccccc-ccc-cCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q psy6814 89 SYLDSLYFCFISITTIGLG-DYI-PGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPEL 151 (171)
Q Consensus 89 s~~da~Yf~~iT~tTIGfG-D~~-P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~~ 151 (171)
++.||+|+.++++||+||| |+. |.+..++ ...+.+..+.++.|+.++.+.++.+.+-.++
T Consensus 180 s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~---~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~ 241 (285)
T 3rvy_A 180 TLGESFYTLFQVMTLESWSMGIVRPLMEVYP---YAWVFFIPFIFVVTFVMINLVVAICVDAMAI 241 (285)
T ss_dssp SHHHHHHHHHHHHTTTTCCCCCHHHHHTTCT---TTHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCC---hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999 997 8876541 1236788888889999999999988875443
No 44
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=97.45 E-value=1.7e-05 Score=66.92 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=22.8
Q ss_pred CCccCceeeeeeeEeccccCCCCc
Q psy6814 34 WSYLDSLYFCFISITTIGLGDYIP 57 (171)
Q Consensus 34 w~~~~a~yF~~~~lTTiGyGd~~P 57 (171)
-+|.+|+||+++|+|||||||+.|
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p 113 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVI 113 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCB
T ss_pred cCHHHHHhhhheeeeeecCCCccC
Confidence 378999999999999999999999
No 45
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=97.37 E-value=4.6e-05 Score=64.32 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=22.2
Q ss_pred CccCceeeeeeeEeccccCCCCc
Q psy6814 35 SYLDSLYFCFISITTIGLGDYIP 57 (171)
Q Consensus 35 ~~~~a~yF~~~~lTTiGyGd~~P 57 (171)
+|.+|+||++.|+|||||||..|
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p 116 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCV 116 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEE
T ss_pred CHHHHhheeeeeeEeecCCCccC
Confidence 78999999999999999999987
No 46
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=96.01 E-value=0.00084 Score=54.27 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCC--CCccCceeeeeeeEeccccC-CCC-cc
Q psy6814 9 GSLVITLSILFIFIPAYVFSSIEPN--WSYLDSLYFCFISITTIGLG-DYI-PG 58 (171)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~--w~~~~a~yF~~~~lTTiGyG-d~~-Pg 58 (171)
+.++.+++.+|-.+|...|....++ -|+++|++.+++++||.||| |+. |.
T Consensus 152 ~~~~~~~~~~fa~~g~~~f~~~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~ 205 (285)
T 3rvy_A 152 IALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPL 205 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 3334444445555566666543333 38889999999999999999 997 73
No 47
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=72.71 E-value=0.71 Score=41.62 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=38.4
Q ss_pred cccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhH
Q psy6814 90 YLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPE 150 (171)
Q Consensus 90 ~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~ 150 (171)
..+++|+++.+++..| ++..|.+..+ |++..+|.+.++.+.+...+.+.+.+.
T Consensus 564 ~~~~~~~~~~~l~~~g-~~~~p~~~~~-------R~~~~~w~~~~lil~~~Yta~L~s~Lt 616 (823)
T 3kg2_A 564 IFNSLWFSLGAFMQQG-ADISPRSLSG-------RIVGGVWWFFTLIIISSYTANLAAFLT 616 (823)
T ss_dssp HHHHHHHTTTTSCC-------CCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCcCCcchhh-------hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578888888888888 6777776555 999999999999999998888777544
No 48
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=66.29 E-value=0.5 Score=36.42 Aligned_cols=59 Identities=14% Similarity=-0.023 Sum_probs=38.7
Q ss_pred ccccceeEEEEEEecccccccccCCCCCcccccchh-hhhhHHHHHHHHHHHHHHHHHHHhhH
Q psy6814 89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYK-IIVSVYLILSLLFTMFVLKTFHAIPE 150 (171)
Q Consensus 89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~-~~~~~~i~~Gl~~~~~~~~~i~~~~~ 150 (171)
++.+|++..+.+.|+-|++|+......+. |... .+....++.+..++.+.++.+.+-.+
T Consensus 165 ~~~~a~~~lf~~~t~~~w~~i~~~~~~~~---~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~ 224 (229)
T 4dxw_A 165 DLGISLITLFQVLTLSSWETVMLPMQEIY---WWSWVYFFSFIIICSITILNLVIAILVDVVI 224 (229)
T ss_dssp SHHHHHHHHHHHHTTSSTHHHHHHHHTTC---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999855433221 2223 33444445567777777777766544
No 49
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=46.15 E-value=2.2 Score=32.66 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhhccccCC-CCC-CccCceeeeeeeEeccccCCCCc
Q psy6814 12 VITLSILFIFIPAYVFSSIE-PNW-SYLDSLYFCFISITTIGLGDYIP 57 (171)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-~~w-~~~~a~yF~~~~lTTiGyGd~~P 57 (171)
+..++.+|-.+|...|.... +++ |+++|++-.+.++|+-|++|+..
T Consensus 140 l~~~~~ifa~~g~~lf~~~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~ 187 (229)
T 4dxw_A 140 LFIILYIYATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWETVML 187 (229)
T ss_dssp HHHHHHHHHHHHHHHTTTTSCTTTSSHHHHHHHHHHHHTTSSTHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCcccccCHHHHHHHHHHHHccCCHHHHHH
Confidence 33333445455555664433 233 88999999999999999998754
No 50
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=29.56 E-value=72 Score=20.61 Aligned_cols=15 Identities=7% Similarity=0.100 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHH
Q psy6814 128 SVYLILSLLFTMFVL 142 (171)
Q Consensus 128 ~~~i~~Gl~~~~~~~ 142 (171)
+..++.|+.++++++
T Consensus 14 v~gvi~gilliGlll 28 (79)
T 2knc_B 14 LLSVMGAILLIGLAA 28 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555544
Done!