Query psy6814
Match_columns 171
No_of_seqs 204 out of 1823
Neff 7.1
Searched_HMMs 13730
Date Fri Aug 16 19:07:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6814.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6814hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lnqa2 f.14.1.1 (A:19-98) Pot 99.6 1.6E-18 1.2E-22 116.5 -5.0 73 68-148 7-79 (80)
2 d1r3jc_ f.14.1.1 (C:) Potassiu 99.5 2.8E-16 2.1E-20 110.0 -0.4 77 69-152 14-96 (103)
3 d1p7ba2 f.14.1.1 (A:36-151) In 99.2 6.2E-13 4.5E-17 94.3 -0.3 54 87-147 59-112 (116)
4 d1xl4a2 f.14.1.1 (A:23-138) In 99.2 5.3E-13 3.8E-17 94.6 -1.8 55 87-148 58-112 (116)
5 d1lnqa2 f.14.1.1 (A:19-98) Pot 99.0 4.4E-12 3.2E-16 84.4 -2.6 48 15-64 8-55 (80)
6 d1r3jc_ f.14.1.1 (C:) Potassiu 98.8 1.3E-10 9.4E-15 80.5 -0.5 31 33-64 38-68 (103)
7 d1p7ba2 f.14.1.1 (A:36-151) In 98.7 1.3E-09 9.7E-14 76.6 1.3 33 31-64 57-89 (116)
8 d1xl4a2 f.14.1.1 (A:23-138) In 98.6 2.2E-09 1.6E-13 75.4 -0.2 32 32-64 57-88 (116)
9 d2h8pc1 f.14.1.1 (C:22-78) Pot 96.7 1.2E-05 8.9E-10 49.3 -4.4 36 71-106 16-57 (57)
10 d2h8pc1 f.14.1.1 (C:22-78) Pot 96.3 0.00012 9E-09 44.6 -1.9 19 34-52 39-57 (57)
No 1
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}
Probab=99.62 E-value=1.6e-18 Score=116.46 Aligned_cols=73 Identities=25% Similarity=0.387 Sum_probs=65.2
Q ss_pred hHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6814 68 TLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA 147 (171)
Q Consensus 68 ~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~ 147 (171)
..+..++..++..++..| +|++.||+||+++|+|||||||++|.++.+ |++++++++.|+..++..++.+.+
T Consensus 7 ~~~~~~~~~g~~~~~~~e-~~s~~dalyf~~~T~tTiGyGD~~P~t~~~-------r~~~~~~~l~g~~~~~~~i~~i~~ 78 (80)
T d1lnqa2 7 LLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSPSTPLG-------MYFTVTLIVLGIGTFAVAVERLLE 78 (80)
T ss_dssp TTTTTSHHHHTTTTTTSS-SCCSSTTHHHHHHHHTTCCCSSCCCCCSSH-------HHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHhhheeeccCCCCCCCCcch-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778899999888 899999999999999999999999999876 999999999999999999988776
Q ss_pred h
Q psy6814 148 I 148 (171)
Q Consensus 148 ~ 148 (171)
.
T Consensus 79 ~ 79 (80)
T d1lnqa2 79 F 79 (80)
T ss_dssp T
T ss_pred h
Confidence 4
No 2
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=99.53 E-value=2.8e-16 Score=109.95 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=61.7
Q ss_pred HHHHHHhhhhhhhcccCCc------cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHH
Q psy6814 69 LSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVL 142 (171)
Q Consensus 69 llli~i~iga~if~~~e~~------ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~ 142 (171)
++++.++.++..+...|++ .++.||+||+++|+|||||||++|.+..| |++++++++.|+.+++..+
T Consensus 14 ~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~g-------r~~~~~~~~~Gi~~~~~~~ 86 (103)
T d1r3jc_ 14 LLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG-------RCVAVVVMVAGITSFGLVT 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhH-------HHHHHHHHHHHHHHHHHHH
Confidence 3344455566655555421 46889999999999999999999999877 9999999999999999999
Q ss_pred HHHHHhhHHH
Q psy6814 143 KTFHAIPELK 152 (171)
Q Consensus 143 ~~i~~~~~~~ 152 (171)
+.+.+...++
T Consensus 87 ~~i~~~~~~~ 96 (103)
T d1r3jc_ 87 AALATWFVGR 96 (103)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888765543
No 3
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=99.20 E-value=6.2e-13 Score=94.30 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=48.7
Q ss_pred ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6814 87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA 147 (171)
Q Consensus 87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~ 147 (171)
.+++.||+||+++|+|||||||+.|.+..+ |+++.+.++.|+.+.+..++.+.+
T Consensus 59 ~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~-------~~~~~~~~~~g~~~~a~~~g~i~~ 112 (116)
T d1p7ba2 59 PPGFVGAFFFSVETLATVGYGDMHPQTVYA-------HAIATLEIFVGMSGIALSTGLVFA 112 (116)
T ss_dssp SSSTHHHHHHHTTTTTTCCCSCCCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccccccccCCcHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999998665 999999999999999998876654
No 4
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=99.17 E-value=5.3e-13 Score=94.61 Aligned_cols=55 Identities=22% Similarity=0.316 Sum_probs=49.3
Q ss_pred ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy6814 87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAI 148 (171)
Q Consensus 87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~ 148 (171)
.+++.||+||+++|+|||||||++|.+..+ |+++.++++.|+...+..++.+..-
T Consensus 58 ~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~-------r~~~~~~~~~G~~~~a~~~g~i~~~ 112 (116)
T d1xl4a2 58 PGSFTDAFFFSVQTMATIGYGKLIPIGPLA-------NTLVTLEALCGMLGLAVAASLIYAR 112 (116)
T ss_dssp TTCHHHHHHHHHHHHTTCCCSSSCCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCCCccccCCcHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999998665 9999999999999999988876543
No 5
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}
Probab=99.01 E-value=4.4e-12 Score=84.37 Aligned_cols=48 Identities=35% Similarity=0.555 Sum_probs=40.6
Q ss_pred HHHHHHHhhhhccccCCCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 15 LSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
+++.++.+++..++. .|+||+.||+||+++|+|||||||++|. +..||
T Consensus 8 ~~~~~~~~g~~~~~~-~e~~s~~dalyf~~~T~tTiGyGD~~P~-t~~~r 55 (80)
T d1lnqa2 8 LVLAVIIYGTAGFHF-IEGESWTVSLYWTFVTIATVGYGDYSPS-TPLGM 55 (80)
T ss_dssp TTTTSHHHHTTTTTT-SSSCCSSTTHHHHHHHHTTCCCSSCCCC-CSSHH
T ss_pred HHHHHHHHHHHHHHH-HhCCCHHHHHHHHhhheeeccCCCCCCC-CcchH
Confidence 345677888888886 4789999999999999999999999996 55555
No 6
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=98.84 E-value=1.3e-10 Score=80.52 Aligned_cols=31 Identities=29% Similarity=0.535 Sum_probs=27.2
Q ss_pred CCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 33 NWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 33 ~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
..++.||+||+++|+||+||||++|. +..||
T Consensus 38 ~~s~~~aly~~~vT~tTvGYGDi~P~-t~~gr 68 (103)
T d1r3jc_ 38 LITYPRALWWSVETATTVGYGDLYPV-TLWGR 68 (103)
T ss_dssp CCSHHHHHHHHHHHHTTCCCSSSCCC-SHHHH
T ss_pred cCchhhhhhhheeeecccccCccccC-ChhHH
Confidence 35889999999999999999999996 55566
No 7
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=98.70 E-value=1.3e-09 Score=76.63 Aligned_cols=33 Identities=18% Similarity=0.502 Sum_probs=28.4
Q ss_pred CCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 31 EPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 31 ~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
++.|+|.||+||+.+|+|||||||++|. ...|+
T Consensus 57 ~~~~~~~~a~yfs~~T~tTvGYGDi~P~-t~~~~ 89 (116)
T d1p7ba2 57 QSPPGFVGAFFFSVETLATVGYGDMHPQ-TVYAH 89 (116)
T ss_dssp SSSSSTHHHHHHHTTTTTTCCCSCCCCC-SHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccccccC-CcHHH
Confidence 3578999999999999999999999996 44455
No 8
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=98.60 E-value=2.2e-09 Score=75.44 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=27.4
Q ss_pred CCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814 32 PNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64 (171)
Q Consensus 32 ~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~ 64 (171)
+.++|.||+||+++|+|||||||++|. ...|+
T Consensus 57 ~~~~~~~a~yfs~~T~tTvGYGDi~P~-t~~~r 88 (116)
T d1xl4a2 57 RPGSFTDAFFFSVQTMATIGYGKLIPI-GPLAN 88 (116)
T ss_dssp CTTCHHHHHHHHHHHHTTCCCSSSCCC-HHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCCCccccC-CcHHH
Confidence 567999999999999999999999995 44444
No 9
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=96.74 E-value=1.2e-05 Score=49.29 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=24.1
Q ss_pred HHHHhhhhhhhcccCC-----cc-ccccceeEEEEEEecccc
Q psy6814 71 ILFIFIPAYVFSSIEP-----NW-SYLDSLYFCFISITTIGL 106 (171)
Q Consensus 71 li~i~iga~if~~~e~-----~w-s~~da~Yf~~iT~tTIGf 106 (171)
++.+.+++......|+ +. +..||+||+++|+|||||
T Consensus 16 ~i~i~~~s~~~y~~E~~~~~~~f~sip~a~WWaivT~TTVGY 57 (57)
T d2h8pc1 16 VIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY 57 (57)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCccccccchhhhhheeeeecccC
Confidence 3334444444444453 22 567999999999999998
No 10
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=96.27 E-value=0.00012 Score=44.61 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=17.8
Q ss_pred CCccCceeeeeeeEecccc
Q psy6814 34 WSYLDSLYFCFISITTIGL 52 (171)
Q Consensus 34 w~~~~a~yF~~~~lTTiGy 52 (171)
=+.+||++++++|+|||||
T Consensus 39 ~sip~a~WWaivT~TTVGY 57 (57)
T d2h8pc1 39 ITYPRALWWACETATTVGY 57 (57)
T ss_dssp CSHHHHHHHHHHHHTTCCC
T ss_pred cccchhhhhheeeeecccC
Confidence 3889999999999999998
Done!