RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6814
(171 letters)
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 77.6 bits (190), Expect = 7e-18
Identities = 50/147 (34%), Positives = 79/147 (53%)
Query: 11 LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLS 70
I S++ I +++ + + G + + + L
Sbjct: 123 FCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFHIRWGFSKQVVAIVHAVLLGFVTV 182
Query: 71 ILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVY 130
F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PGE Q+F+ LYKI ++ Y
Sbjct: 183 SCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCY 242
Query: 131 LILSLLFTMFVLKTFHAIPELKIMKIL 157
L+L L+ + VL+TF + ELK + +
Sbjct: 243 LLLGLIAMLVVLETFCELHELKKFRKM 269
Score = 25.9 bits (56), Expect = 7.6
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 75 FIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILS 134
+ +S NW + +L+F ++T G G +P + F +Y +I + +L
Sbjct: 79 GVSVLSQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLF 138
Query: 135 L 135
L
Sbjct: 139 L 139
Score = 25.6 bits (55), Expect = 8.6
Identities = 12/64 (18%), Positives = 26/64 (40%)
Query: 21 FIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFIPAYV 80
+ +S NW + +L+F ++T G G +P + I S++ I
Sbjct: 79 GVSVLSQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLF 138
Query: 81 FSSI 84
+++
Sbjct: 139 LTAV 142
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 62.5 bits (151), Expect = 2e-12
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 66 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKI 125
++ +LF+ P +VF +E +WS L+++YF +++TT+G GDY+ G P+Q+ Y+
Sbjct: 202 LLIGCLLFVLTPTFVFCYME-DWSKLEAIYFVIVTLTTVGFGDYVAGADPRQD-SPAYQP 259
Query: 126 IVSVYLILSLLFTMFVLKTFHAIPELKIMKIL 157
+V +++L L + VL T + +
Sbjct: 260 LVWFWILLGLAYFASVLTTIGNWLRVVSRRTR 291
Score = 51.4 bits (122), Expect = 2e-08
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 12 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSI 71
++ +LF+ P +VF +E +WS L+++YF +++TT+G GDY+ G +
Sbjct: 202 LLIGCLLFVLTPTFVFCYME-DWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPL 260
Query: 72 LFIFI 76
++ +I
Sbjct: 261 VWFWI 265
Score = 28.3 bits (62), Expect = 1.4
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 29 SIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFIPAYVFSSI 84
S W + +F ITTIG G+ I +++ I + + + +
Sbjct: 109 SSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGV 164
Score = 28.3 bits (62), Expect = 1.5
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 83 SIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKII-VSVYLILSLLFTMFV 141
S W + +F ITTIG G+ + F Y ++ + ++ IL +
Sbjct: 109 SSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRL 168
Query: 142 LKTFHAI 148
+
Sbjct: 169 GSSLRHG 175
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 49.9 bits (119), Expect = 2e-08
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 65 LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYK 124
++ L+ L + +S++E LD+LYF +++TT+G G++ P + F LY
Sbjct: 29 VLFVLTFLTLTSGTIFYSTVE-GLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILY- 86
Query: 125 IIVSVYLILSLLFTMFVLKTFHAIPELKIMK 155
I + + L+ + + V +I + +
Sbjct: 87 IFIGIGLVFGFIHKLAVNVQLPSILSNRKKE 117
Score = 46.5 bits (110), Expect = 3e-07
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 11 LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLS 70
++ L+ L + +S++E LD+LYF +++TT+G G++ P + G + L
Sbjct: 29 VLFVLTFLTLTSGTIFYSTVE-GLRPLDALYFSVVTLTTVGDGNFSP-QTDFGKVFTILY 86
Query: 71 ILF 73
I
Sbjct: 87 IFI 89
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 47.1 bits (112), Expect = 6e-07
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 5 FSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64
+ ++ L + I F IE S+ SLY+ F++I T+G GDY P + LG
Sbjct: 16 LKVPATRILLLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSP-STPLGM 73
Query: 65 LV-ITLSILFIFIPAYVFSSI 84
+TL +L I A +
Sbjct: 74 YFTVTLIVLGIGTFAVAVERL 94
Score = 43.6 bits (103), Expect = 8e-06
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Query: 59 LSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQE 118
L + ++ L + I F IE S+ SLY+ F++I T+G GDY P
Sbjct: 16 LKVPATRILLLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSPSTPLGMY 74
Query: 119 FKSLYKI--IVSVYLILSLLFTMFVLKTFHAIPELKIMK 155
F + I + + + L + + + L +
Sbjct: 75 FTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLIDVA 113
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 40.6 bits (95), Expect = 2e-05
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 65 LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYK 124
++ L+IL + +S++E +D+LYF +++TT+G GD+ P + F LY
Sbjct: 9 VLFVLTILTLISGTIFYSTVE-GLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILY- 66
Query: 125 IIVSVYLILSLLFTMFV 141
I + + L+ + + V
Sbjct: 67 IFIGIGLVFGFIHKLAV 83
Score = 39.4 bits (92), Expect = 5e-05
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 11 LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLS 70
++ L+IL + +S++E +D+LYF +++TT+G GD+ P + G + L
Sbjct: 9 VLFVLTILTLISGTIFYSTVE-GLRPIDALYFSVVTLTTVGYGDFSP-QTDFGKIFTILY 66
Query: 71 ILF 73
I
Sbjct: 67 IFI 69
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 40.2 bits (94), Expect = 3e-05
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 65 LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYK 124
++ L+IL + +S++E +D+LYF +++TT+G G++ P + F LY
Sbjct: 26 VLFVLTILTLISGTIFYSTVE-GLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILY- 83
Query: 125 IIVSVYLILSLLFTMFV 141
I + + L+ + + V
Sbjct: 84 IFIGIGLVFGFIHKLAV 100
Score = 39.9 bits (93), Expect = 4e-05
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 11 LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLS 70
++ L+IL + +S++E +D+LYF +++TT+G G++ P + I
Sbjct: 26 VLFVLTILTLISGTIFYSTVE-GLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYI 84
Query: 71 ILFIFIPAYVFSSI 84
+ I + +
Sbjct: 85 FIGIGLVFGFIHKL 98
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 38.9 bits (91), Expect = 6e-05
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 10 SLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITL 69
+ ++ L + I F IE S+ SLY+ F++I T+G GDY P TL
Sbjct: 4 TRILLLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTL 62
Query: 70 SILFIFIPAYVFSSI 84
+L I A +
Sbjct: 63 IVLGIGTFAVAVERL 77
Score = 37.3 bits (87), Expect = 2e-04
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 64 SLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
+ ++ L + I F IE S+ SLY+ F++I T+G GDY P F
Sbjct: 4 TRILLLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTL 62
Query: 124 KII 126
++
Sbjct: 63 IVL 65
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 37.6 bits (87), Expect = 4e-04
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 13/90 (14%)
Query: 1 LKIKFSYLGSLVITLSILFIFI----PAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYI 56
L +++ S L + P + +L++ + TT+G GD
Sbjct: 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYP------RALWWSVETATTVGYGDLY 61
Query: 57 PGLSY---LGSLVITLSILFIFIPAYVFSS 83
P + + +V+ I + ++
Sbjct: 62 PVTLWGRLVAVVVMVAGITSFGLVTAALAT 91
Score = 31.4 bits (71), Expect = 0.058
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 10/55 (18%)
Query: 67 ITLSILFIFIPAYVFSSI----------EPNWSYLDSLYFCFISITTIGLGDYIP 111
+ + + I S + +Y +L++ + TT+G GD P
Sbjct: 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP 62
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 38.0 bits (88), Expect = 5e-04
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 13/84 (15%)
Query: 13 ITLSILFIFIPAYVFSSI----------EPNWSYLDSLYFCFISITTIGLGDYIPGLSY- 61
+ + + I S + +Y +L++ + TT+G GD P +
Sbjct: 35 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG 94
Query: 62 --LGSLVITLSILFIFIPAYVFSS 83
+ +V+ I + ++
Sbjct: 95 RLVAVVVMVAGITSFGLVTAALAT 118
Score = 32.2 bits (73), Expect = 0.041
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 10/55 (18%)
Query: 67 ITLSILFIFIPAYVFSSI----------EPNWSYLDSLYFCFISITTIGLGDYIP 111
+ + + I S + +Y +L++ + TT+G GD P
Sbjct: 35 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP 89
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 35.9 bits (83), Expect = 0.001
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 6/89 (6%)
Query: 1 LKIKFSYLGSLVITLSILFIFIPAYVFSSIEPN---WSYLDSLYFCFISITTIGLGDYIP 57
+ + + + A P SY D++++ + TT+G GD P
Sbjct: 3 DHEREAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYP 62
Query: 58 GLSY---LGSLVITLSILFIFIPAYVFSS 83
+ V+ I + ++
Sbjct: 63 VTEEGRKVAEQVMKAGIEVFALVTAALAT 91
Score = 29.7 bits (67), Expect = 0.18
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 10/57 (17%)
Query: 59 LSYLGSLVITLSILFIFI----PAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIP 111
L ++ S + P S D++++ + TT+G GD P
Sbjct: 12 EEELQKVLEEASKKAVEAERGAPGAALISYP------DAIWWSVETATTVGYGDRYP 62
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 36.2 bits (83), Expect = 0.004
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 13 ITLSILFIFIPAYVFSS----IEPNW------SYLDSLYFCFISITTIGLGDYIPGLSYL 62
+ L I F+FI +FSS E + S D+ ++ +S+TT+G GD +P +
Sbjct: 343 LGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVP-TTIG 401
Query: 63 G----SLVITLSILFIFIPAYVFSS 83
G SL +L I +P V S
Sbjct: 402 GKIVGSLCAIAGVLTIALPVPVIVS 426
Score = 33.5 bits (76), Expect = 0.030
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 18/106 (16%)
Query: 52 LGDYIPGLSYLGSLV------ITLSILFIFIPAYVFSS----IEPNW------SYLDSLY 95
L + GL LG + + L I F+FI +FSS E + S D+ +
Sbjct: 322 LSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFW 381
Query: 96 FCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFV 141
+ +S+TT+G GD +P + SL ++ L ++L + V
Sbjct: 382 WAVVSMTTVGYGDMVPTTIGGKIVGSL--CAIAGVLTIALPVPVIV 425
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 35.2 bits (81), Expect = 0.004
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 13/85 (15%)
Query: 12 VITLSILFIFIPAYVFSSI----------EPNWSYLDSLYFCFISITTIGLGDYIPGLSY 61
+ + + I S + SY D+L++ + TT+G GD P +
Sbjct: 51 AAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLW 110
Query: 62 ---LGSLVITLSILFIFIPAYVFSS 83
+ +V+ I + ++
Sbjct: 111 GRCVAVVVMVAGITSYGLVFAAVAT 135
Score = 30.2 bits (68), Expect = 0.21
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 66 VITLSILFIFIPAYVFSSI----------EPNWSYLDSLYFCFISITTIGLGDYIP 111
+ + + I S + SY D+L++ + TT+G GD P
Sbjct: 51 AAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYP 106
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 35.4 bits (81), Expect = 0.006
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 1 LKIKFSYLGSLVITLSILFIFIPAYVF----SSIEPNWSYLDSLYFCFISITTIGLGDYI 56
+ + L +F AY+ S+ D+ +F ++ TIG G I
Sbjct: 44 VSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLI 103
Query: 57 PGLSYLGSLVITLSILFIFIPAYVFSSI 84
P +LV ++ + A S I
Sbjct: 104 PIGPLANTLVTLEALCGMLGLAVAASLI 131
Score = 32.3 bits (73), Expect = 0.052
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 10/83 (12%)
Query: 32 PNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFIPAYVFSSIEPNW--- 88
+LD Y ++++ ++ + L + + LF + N
Sbjct: 29 EKRGWLDDHYHDLLTVSWPVF------ITLITGLYLVTNALFALA-YLACGDVIENARPG 81
Query: 89 SYLDSLYFCFISITTIGLGDYIP 111
S+ D+ +F ++ TIG G IP
Sbjct: 82 SFTDAFFFSVQTMATIGYGKLIP 104
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 34.8 bits (80), Expect = 0.009
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 13/84 (15%)
Query: 13 ITLSILFIFIPAYVFSSI--------EPNW--SYLDSLYFCFISITTIGLGDYIPGLSY- 61
+ + + + +P S ++++ ++++T G GD IP
Sbjct: 129 LIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAG 188
Query: 62 --LGSLVITLSILFIFIPAYVFSS 83
L V+ I + A + ++
Sbjct: 189 RVLAGAVMMSGIGIFGLWAGILAT 212
Score = 31.4 bits (71), Expect = 0.11
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 16/73 (21%)
Query: 55 YIPGLSYLGSLV------ITLSILFIFIPAYVFSSI--------EPNW--SYLDSLYFCF 98
LG ++ + + + + +P S ++++
Sbjct: 111 DSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAV 170
Query: 99 ISITTIGLGDYIP 111
++++T G GD IP
Sbjct: 171 VTLSTTGYGDTIP 183
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 32.7 bits (75), Expect = 0.019
Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 13/85 (15%)
Query: 12 VITLSILFIFIPAYVFSSI----------EPNWSYLDSLYFCFISITTIGLGDYIPGLSY 61
+ + + I S + +Y +L++ + TT+ GD P +
Sbjct: 28 AAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLW 87
Query: 62 ---LGSLVITLSILFIFIPAYVFSS 83
+ +V+ I + ++
Sbjct: 88 GRLVAVVVMVAGITSFGLVTAALAT 112
Score = 27.7 bits (62), Expect = 0.90
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 10/56 (17%)
Query: 66 VITLSILFIFIPAYVFSSI----------EPNWSYLDSLYFCFISITTIGLGDYIP 111
+ + + I S + +Y +L++ + TT+ GD P
Sbjct: 28 AAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYP 83
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 33.2 bits (75), Expect = 0.029
Identities = 12/90 (13%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 1 LKIKFSYLGSLVITLSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGD 54
LK+ + + + L ++ + A ++ + ++ + +F ++ T+G GD
Sbjct: 56 LKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGD 115
Query: 55 YIPGLSYLGSLVITLSILFIFIPAYVFSSI 84
P Y ++ + + A +
Sbjct: 116 MHPQTVYAHAIATLEIFVGMSGIALSTGLV 145
Score = 30.9 bits (69), Expect = 0.15
Identities = 10/87 (11%), Positives = 25/87 (28%), Gaps = 11/87 (12%)
Query: 65 LVITLSILFIFIPAYVFSSIEPNW----SYLDSLYFCFISITTIGLGDYIPGESPQQEFK 120
+ + +F Y ++ + +F ++ T+G GD P
Sbjct: 68 AALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQT------- 120
Query: 121 SLYKIIVSVYLILSLLFTMFVLKTFHA 147
I ++ + + + A
Sbjct: 121 VYAHAIATLEIFVGMSGIALSTGLVFA 147
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 32.8 bits (74), Expect = 0.036
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 1 LKIKFSYLGSLVITLSILFIFIPAYVFSSIEPN----WSYLDSLYFCFISITTIGLGDYI 56
LK ++ ++ V+ L + F Y+ S + + +F ++ T+G GD
Sbjct: 40 LKWRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMH 99
Query: 57 PGLSYLGSLVITLSILFIFIPAYVFSSI 84
P Y + + + A
Sbjct: 100 PQTVYAHWIATLEIFVGMSSIALATGCA 127
Score = 28.1 bits (62), Expect = 1.2
Identities = 10/78 (12%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 34 WSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDS 93
YL L+ + + + + L++ + +++ + + + +
Sbjct: 27 SRYLSDLFTTLVDLKW----RWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGA 82
Query: 94 LYFCFISITTIGLGDYIP 111
+F ++ T+G GD P
Sbjct: 83 FFFSVETLATVGYGDMHP 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.058
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 37/107 (34%)
Query: 32 PNWSYLDSLYFCFISITTIGL---GDYI---------PG--LSYL-GSLVITLSILFIFI 76
P+ YL S IS IG+ Y+ PG SYL G+ + + +
Sbjct: 226 PDKDYLLS---IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL----V 278
Query: 77 PAYVFSSIEPNWSYLDSLYFCFISITT----IGLGDYIPGESPQQEF 119
A + +W +S + T IG+ + +
Sbjct: 279 TAVAIAE-TDSW---ESFFVSVRKAITVLFFIGV------RC-YEAY 314
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 29.9 bits (68), Expect = 0.34
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 8 LGSLVITLSILFIFIPAYVFSSIEPNW------SYLDSLYFCFISITTIGLGDYIPGLSY 61
+ +L + A+ +E S D+L++ ++ TT+G GD +P
Sbjct: 132 RFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPI 191
Query: 62 ---LGSLVITLSILFIFIPAYVFSS 83
+G V+ I + + S+
Sbjct: 192 GKVIGIAVMLTGISALTLLIGTVSN 216
Score = 26.4 bits (59), Expect = 4.9
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 62 LGSLVITLSILFIFIPAYVFSSIEPNW------SYLDSLYFCFISITTIGLGDYIP 111
+ +L + A+ +E S D+L++ ++ TT+G GD +P
Sbjct: 132 RFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVP 187
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 28.6 bits (63), Expect = 0.92
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 35 SYLDSLYFCFISITTIGLGD-YIPGLSYLGSLVITL-----SILFIFIPAYVFSSIEPNW 88
++ + F + TTIG G + L ++ + I+ F+ + + +
Sbjct: 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153
Query: 89 SYLDSLYF 96
+L F
Sbjct: 154 KRAQTLLF 161
Score = 28.2 bits (62), Expect = 1.5
Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 2/112 (1%)
Query: 37 LDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYF 96
+ Y + + + GL + +I + + ++ + F
Sbjct: 42 IRWRYMLLLFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLF 101
Query: 97 CFISITTIGLGD-YIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA 147
+ TTIG G + E P F + + IV +I S + + K
Sbjct: 102 SIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGC-IIDSFMIGAIMAKMARP 152
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 28.2 bits (62), Expect = 1.2
Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 8/128 (6%)
Query: 37 LDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYF 96
L + I + + G+ + I + I P++ + ++ + F
Sbjct: 40 LKWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWT-PCVTNLNGFVSAFLF 98
Query: 97 CFISITTIGLGD-YIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPELKIMK 155
+ TTIG G I + P I++ + +L + F++ +
Sbjct: 99 SIETETTIGYGYRVITDKCP------EGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152
Query: 156 ILSLRFND 163
+L F+
Sbjct: 153 AETLVFST 160
>3big_A Fructose-1,6-bisphosphatase class II GLPX; carbohydrate metabolism,
hydrolase manganese; 1.85A {Escherichia coli} PDB:
2r8t_A 3bih_A 1ni9_A 3d1r_A*
Length = 338
Score = 26.5 bits (59), Expect = 5.4
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 38 DSLYFCFISITTIGLGDYIPGLSYLGSLVITLSIL 72
D++ F IT GD + G+S G++ T ++L
Sbjct: 278 DNVIFSATGITK---GDLLEGISRKGNIATTETLL 309
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.147 0.446
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,551,371
Number of extensions: 140517
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 79
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.6 bits)