RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6814
         (171 letters)



>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
          {Archaeon Methanothermobacter thermautotrophicus
          [TaxId: 145262]}
          Length = 80

 Score = 37.8 bits (88), Expect = 5e-05
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 10 SLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITL 69
          + ++ L +  I      F  IE   S+  SLY+ F++I T+G GDY P         +TL
Sbjct: 3  TRILLLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTL 61

Query: 70 SILFIFIPAYVFSSI 84
           +L I   A     +
Sbjct: 62 IVLGIGTFAVAVERL 76



 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 64  SLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
           + ++ L +  I      F  IE   S+  SLY+ F++I T+G GDY P          L 
Sbjct: 3   TRILLLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSPS-------TPLG 54

Query: 124 KIIVSVYLILSLLFTMFVLKTFHAI 148
                  ++L +      ++     
Sbjct: 55  MYFTVTLIVLGIGTFAVAVERLLEF 79


>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
           Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 116

 Score = 30.3 bits (68), Expect = 0.049
 Identities = 9/82 (10%), Positives = 26/82 (31%)

Query: 3   IKFSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYL 62
                   +V       ++       + +    ++ + +F   ++ T+G GD  P   Y 
Sbjct: 29  FASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYA 88

Query: 63  GSLVITLSILFIFIPAYVFSSI 84
            ++      + +   A     +
Sbjct: 89  HAIATLEIFVGMSGIALSTGLV 110



 Score = 26.5 bits (58), Expect = 0.88
 Identities = 8/68 (11%), Positives = 22/68 (32%)

Query: 59  LSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQE 118
                 +V       ++       + +    ++ + +F   ++ T+G GD  P       
Sbjct: 31  SLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHA 90

Query: 119 FKSLYKII 126
             +L   +
Sbjct: 91  IATLEIFV 98


>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
           kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
           188]}
          Length = 116

 Score = 29.2 bits (65), Expect = 0.11
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 1   LKIKFSYLGSLVITLSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGD 54
           L + +    +L+  L ++   + A  + +           S+ D+ +F   ++ TIG G 
Sbjct: 20  LTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK 79

Query: 55  YIPGLSYLGSLVITLSILFIFIPAYVFSSI 84
            IP      +LV   ++  +   A   S I
Sbjct: 80  LIPIGPLANTLVTLEALCGMLGLAVAASLI 109



 Score = 24.6 bits (53), Expect = 5.3
 Identities = 13/71 (18%), Positives = 25/71 (35%)

Query: 65  LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYK 124
           LV        ++            S+ D+ +F   ++ TIG G  IP         +L  
Sbjct: 36  LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEA 95

Query: 125 IIVSVYLILSL 135
           +   + L ++ 
Sbjct: 96  LCGMLGLAVAA 106


>d1dcja_ d.68.3.3 (A:) SirA {Escherichia coli [TaxId: 562]}
          Length = 81

 Score = 27.1 bits (60), Expect = 0.43
 Identities = 4/29 (13%), Positives = 13/29 (44%)

Query: 141 VLKTFHAIPELKIMKILSLRFNDPGFYKN 169
           V+     +  ++  + L +  +DP   ++
Sbjct: 23  VMMVRKTVRNMQPGETLLIIADDPATTRD 51


>d1pava_ d.68.3.3 (A:) Hypothetical protein Ta1170/Ta1414 {Archaeon
           Thermoplasma acidophilum [TaxId: 2303]}
          Length = 78

 Score = 25.9 bits (57), Expect = 0.83
 Identities = 6/29 (20%), Positives = 16/29 (55%)

Query: 141 VLKTFHAIPELKIMKILSLRFNDPGFYKN 169
           +++   A  + K+ +++S+   D G  K+
Sbjct: 20  LMELIKAYKQAKVGEVISVYSTDAGTKKD 48


>d1jdqa_ d.68.3.3 (A:) Hypothetical protein TM0983 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 98

 Score = 25.6 bits (56), Expect = 1.5
 Identities = 6/29 (20%), Positives = 14/29 (48%)

Query: 141 VLKTFHAIPELKIMKILSLRFNDPGFYKN 169
            ++T  A+  +K  +IL +  + P   + 
Sbjct: 40  DVETKRALQNMKPGEILEVWIDYPMSKER 68


>d1je3a_ d.68.3.3 (A:) hypothetical protein YedF (EC005)
           {Escherichia coli [TaxId: 562]}
          Length = 97

 Score = 25.1 bits (55), Expect = 2.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 141 VLKTFHAIPELKIMKILSLRFNDPGFYKN 169
            + T  A+P+LK  +IL +  + P    N
Sbjct: 41  AVATLEAMPQLKKGEILEVVSDCPQSINN 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.147    0.446 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 640,738
Number of extensions: 28412
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 22
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.8 bits)