Query psy6815
Match_columns 263
No_of_seqs 126 out of 446
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 19:07:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kih_A Matrix protein 2; S31N, 11.5 3E+02 0.01 17.3 3.6 22 214-235 12-33 (43)
2 2lx0_A Membrane fusion protein 6.2 4.8E+02 0.016 15.1 2.7 18 214-231 12-29 (32)
3 2ljb_A M2 protein, BM2 protein 4.9 5.4E+02 0.018 15.6 2.5 16 214-229 12-27 (35)
4 2km4_A Regulator of TY1 transp 4.7 3.1E+02 0.011 21.1 1.7 12 122-133 60-71 (142)
5 1ter_A Tertiapin; toxin; NMR { 4.7 2.2E+02 0.0074 15.9 0.5 10 61-70 9-18 (26)
6 1w8x_P Protein P16, protein S, 4.3 3.4E+02 0.012 20.0 1.6 9 204-212 15-23 (117)
7 3qap_A Sensory rhodopsin-2; ph 4.0 7E+02 0.024 21.0 3.6 32 208-239 6-37 (239)
8 3lbw_A M2 protein; proton chan 3.9 6.5E+02 0.022 13.8 2.8 15 215-229 6-20 (23)
9 3bkd_A Transmembrane domain of 3.8 7E+02 0.024 14.0 2.8 15 215-229 9-23 (26)
10 2pyq_A Uncharacterized protein 3.7 1E+03 0.036 18.1 3.9 31 93-123 77-107 (114)
No 1
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=11.55 E-value=3e+02 Score=17.32 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhchhH
Q psy6815 214 LLTIITALSLVYRVAVIMGPQL 235 (263)
Q Consensus 214 ~l~iit~~~li~wi~~l~~~~~ 235 (263)
.-.++.++.++.|+.--....+
T Consensus 12 aa~iiGIlHLiLwildRlffkc 33 (43)
T 2kih_A 12 AANIIGILHLILWILDRLFFKS 33 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788889999875444333
No 2
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=6.17 E-value=4.8e+02 Score=15.14 Aligned_cols=18 Identities=17% Similarity=0.360 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy6815 214 LLTIITALSLVYRVAVIM 231 (263)
Q Consensus 214 ~l~iit~~~li~wi~~l~ 231 (263)
.++.+|.+.+-+|++...
T Consensus 12 lvalltflafgfwlfkyl 29 (32)
T 2lx0_A 12 LVALLTFLAFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356677778888887643
No 3
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=4.94 E-value=5.4e+02 Score=15.57 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6815 214 LLTIITALSLVYRVAV 229 (263)
Q Consensus 214 ~l~iit~~~li~wi~~ 229 (263)
.-.++.++.++.|+.-
T Consensus 12 aA~IigiLHlilWild 27 (35)
T 2ljb_A 12 AASIIGILHFIAWTIG 27 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3456788888888874
No 4
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=4.69 E-value=3.1e+02 Score=21.13 Aligned_cols=12 Identities=33% Similarity=0.238 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q psy6815 122 VLNFVNVVLQIY 133 (263)
Q Consensus 122 ~L~l~N~v~Q~~ 133 (263)
+||++|-|+|--
T Consensus 60 ~lYL~NDVlqns 71 (142)
T 2km4_A 60 GLYLMNHVVQQA 71 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 577889888843
No 5
>1ter_A Tertiapin; toxin; NMR {Apis mellifera} SCOP: j.20.1.1
Probab=4.68 E-value=2.2e+02 Score=15.89 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=7.9
Q ss_pred hhhHHHHHhh
Q psy6815 61 YVPRYLWKSW 70 (263)
Q Consensus 61 ylP~~iWk~~ 70 (263)
.+||.-||-.
T Consensus 9 iiphmcwkkc 18 (26)
T 1ter_A 9 IIPHMCWKKC 18 (26)
T ss_dssp SCCHHHHHHH
T ss_pred echhHHHHHh
Confidence 4799999865
No 6
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=4.35 E-value=3.4e+02 Score=20.01 Aligned_cols=9 Identities=33% Similarity=1.789 Sum_probs=5.4
Q ss_pred HHHHHHHHH
Q psy6815 204 IYVFLWFWF 212 (263)
Q Consensus 204 IfifLWfW~ 212 (263)
+.|.+|.||
T Consensus 15 vliliwlwf 23 (117)
T 1w8x_P 15 VLILIWLWF 23 (117)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 455666665
No 7
>3qap_A Sensory rhodopsin-2; phototaxis, nphtrii, membrane, transport protein; HET: RET BOG LFA L2P; 1.90A {Natronomonas pharaonis} SCOP: f.13.1.1 PDB: 1gue_A* 1gu8_A* 1h68_A* 3qdc_A* 2f93_A* 2f95_A* 2ksy_A* 1h2s_A* 1jgj_A*
Probab=3.96 E-value=7e+02 Score=20.97 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q psy6815 208 LWFWFILLTIITALSLVYRVAVIMGPQLRVYL 239 (263)
Q Consensus 208 LWfW~v~l~iit~~~li~wi~~l~~~~~R~~~ 239 (263)
.|+|.++.+.+...-++.+..+...++.|..+
T Consensus 6 ~~lw~~~~~m~~~tv~F~~~~~~~~~~~R~~~ 37 (239)
T 3qap_A 6 TLFWLGAIGMLVGTLAFAWAGRDAGSGERRYY 37 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhhhh
Confidence 58998887665444444333333344555443
No 8
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=3.89 E-value=6.5e+02 Score=13.79 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy6815 215 LTIITALSLVYRVAV 229 (263)
Q Consensus 215 l~iit~~~li~wi~~ 229 (263)
-.++.++.++.|+.-
T Consensus 6 a~iigIlHLiLwIlD 20 (23)
T 3lbw_A 6 ASIIAILHLILWILD 20 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 346677788888763
No 9
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=3.78 E-value=7e+02 Score=14.01 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy6815 215 LTIITALSLVYRVAV 229 (263)
Q Consensus 215 l~iit~~~li~wi~~ 229 (263)
-.++.++.++.|+.-
T Consensus 9 a~iiGilHLiLwIld 23 (26)
T 3bkd_A 9 ASIMGILHLILWILD 23 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 446677788888763
No 10
>2pyq_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.50A {Jannaschia SP} SCOP: a.279.1.1
Probab=3.68 E-value=1e+03 Score=18.11 Aligned_cols=31 Identities=3% Similarity=0.114 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHHHHHH
Q psy6815 93 QERKKLLVEYFTTNLHTQNFYAIRFFICEVL 123 (263)
Q Consensus 93 ~~~~~~l~~~l~~~l~~~~~~~~~Y~~~K~L 123 (263)
.+.++.+++-+-..-+.-...++.|+++|=+
T Consensus 77 d~aI~~V~e~mgks~rnK~R~~~YYllak~f 107 (114)
T 2pyq_A 77 MGGIQSVIETYGRSERNKYRAVVYYMLTKHF 107 (114)
T ss_dssp HHHHHHHHHHHCTTCSCCBHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccCCcceehhHHHHHHHh
Confidence 3444444444312122223468889988743
Done!