Query psy6815
Match_columns 263
No_of_seqs 126 out of 446
Neff 6.1
Searched_HMMs 13730
Date Fri Aug 16 19:07:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6815.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6815hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 8.7 63 0.0046 25.8 1.7 21 37-57 13-33 (447)
2 d1gm5a1 a.24.21.1 (A:7-105) Re 5.5 1.9E+02 0.014 20.0 2.7 35 71-105 32-66 (99)
3 d1h2sa_ f.13.1.1 (A:) Sensory 5.2 2E+02 0.014 22.1 3.0 30 208-237 6-35 (225)
4 d2iuba2 f.17.3.1 (A:286-349) M 4.7 1E+02 0.0073 19.1 0.6 18 209-226 41-58 (64)
5 d2pyqa1 a.279.1.1 (A:1-113) Un 4.6 3.7E+02 0.027 18.8 3.9 11 112-122 95-105 (113)
6 d1m0ka_ f.13.1.1 (A:) Bacterio 4.0 3.7E+02 0.027 20.5 3.9 12 207-218 6-17 (227)
7 d1jb0x_ f.23.20.1 (X:) Subunit 3.9 3.2E+02 0.024 14.2 3.1 20 206-225 4-23 (29)
8 d2q7ra1 f.56.1.1 (A:1-139) Ara 3.6 3.3E+02 0.024 19.3 3.0 42 212-257 9-55 (139)
9 d1vf8a2 d.26.3.1 (A:246-315) C 2.9 3.3E+02 0.024 16.7 2.0 36 10-47 4-39 (70)
10 d2bw3a1 a.270.1.1 (A:79-162) T 2.9 5.5E+02 0.04 16.8 3.2 25 86-110 7-31 (84)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.67 E-value=63 Score=25.77 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=14.9
Q ss_pred ccceeeeeechhHHHHHHHHH
Q psy6815 37 EDQIKYHKYYQWVCFVLFFQA 57 (263)
Q Consensus 37 ~~~~~~i~YYQWVPfiL~~QA 57 (263)
++.++..+.|+|.-+++..-+
T Consensus 13 ~~~~~~~~~~~w~i~~~~~~~ 33 (447)
T d1pw4a_ 13 AEIDPTYRRLRWQIFLGIFFG 33 (447)
T ss_dssp SCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhhHHHHHHHHHHHH
Confidence 445566788999988766544
No 2
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=5.55 E-value=1.9e+02 Score=19.95 Aligned_cols=35 Identities=20% Similarity=0.442 Sum_probs=27.2
Q ss_pred ccchHHHHHHHcCCCCCChHHHHHHHHHHHHHHHH
Q psy6815 71 EGGRIKMLVLDLNCPVINEDCKQERKKLLVEYFTT 105 (263)
Q Consensus 71 ~g~~i~~l~~~~~~~~~~~~~r~~~~~~l~~~l~~ 105 (263)
.|.++..+++.++++....++-.++.+...+|+..
T Consensus 32 ~~k~~~El~eeIdDpLlen~el~~kLqeF~~Yi~~ 66 (99)
T d1gm5a1 32 NTRRIHQLLKELDDPLLENKDLEEKLQAFLDYVKE 66 (99)
T ss_dssp CTTTHHHHHHHCCCGGGGCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhccHhhcCHHHHHHHHHHHHHHHH
Confidence 45578888888888877667777888888888754
No 3
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=5.24 E-value=2e+02 Score=22.09 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q psy6815 208 LWFWFILLTIITALSLVYRVAVIMGPQLRV 237 (263)
Q Consensus 208 LWfW~v~l~iit~~~li~wi~~l~~~~~R~ 237 (263)
-|||...++.+...-++.+..+-..+..|.
T Consensus 6 ~~fwv~~~~m~~~tv~F~~~~~~~~~~~r~ 35 (225)
T d1h2sa_ 6 TLFWLGAIGMLVGTLAFAWAGRDAGSGERR 35 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccch
Confidence 588888877665444344443333344333
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.67 E-value=1e+02 Score=19.07 Aligned_cols=18 Identities=6% Similarity=-0.027 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6815 209 WFWFILLTIITALSLVYR 226 (263)
Q Consensus 209 WfW~v~l~iit~~~li~w 226 (263)
|||.+....+.+...++|
T Consensus 41 ~~~~~~~~~~~~~~~~~~ 58 (64)
T d2iuba2 41 GYPVVLAVMGVIAVIMVV 58 (64)
T ss_dssp -CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555554444444443
No 5
>d2pyqa1 a.279.1.1 (A:1-113) Uncharacterized protein Jann4075 {Jannaschia sp. ccs1 [TaxId: 290400]}
Probab=4.64 E-value=3.7e+02 Score=18.77 Aligned_cols=11 Identities=0% Similarity=0.129 Sum_probs=8.3
Q ss_pred hhHHHHHHHHH
Q psy6815 112 FYAIRFFICEV 122 (263)
Q Consensus 112 ~~~~~Y~~~K~ 122 (263)
..++.|+++|=
T Consensus 95 R~~~YYllak~ 105 (113)
T d2pyqa1 95 RAVVYYMLTKH 105 (113)
T ss_dssp HHHHHHHHHHH
T ss_pred eeehhHHHHHH
Confidence 46888888874
No 6
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=4.03 E-value=3.7e+02 Score=20.46 Aligned_cols=12 Identities=8% Similarity=0.299 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHH
Q psy6815 207 FLWFWFILLTII 218 (263)
Q Consensus 207 fLWfW~v~l~ii 218 (263)
.+|+|+.+.+..
T Consensus 6 ~~wlw~~~~~m~ 17 (227)
T d1m0ka_ 6 WIWLALGTALMG 17 (227)
T ss_dssp HHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 367777776654
No 7
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=3.93 E-value=3.2e+02 Score=14.19 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6815 206 VFLWFWFILLTIITALSLVY 225 (263)
Q Consensus 206 ifLWfW~v~l~iit~~~li~ 225 (263)
.|-=||-+.++.+..+..-|
T Consensus 4 ~frt~wa~lllainflvaay 23 (29)
T d1jb0x_ 4 AFRTFWAVLLLAINFLVAAY 23 (29)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34558888888777665444
No 8
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.64 E-value=3.3e+02 Score=19.27 Aligned_cols=42 Identities=19% Similarity=0.140 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhhcC-----CChHHHHHHhh
Q psy6815 212 FILLTIITALSLVYRVAVIMGPQLRVYLLRIRSRL-----SSQEQIETIAR 257 (263)
Q Consensus 212 ~v~l~iit~~~li~wi~~l~~~~~R~~~i~~~l~~-----~~~~~~~~v~~ 257 (263)
++.++++|+++++.+.+- +.|+-..|+..+. ..+++.+++.|
T Consensus 9 ~vl~~~vt~l~~~~~~~l----s~~Vg~aR~k~~v~~p~~~g~~~f~ra~R 55 (139)
T d2q7ra1 9 VVLLAIVTLISVVQNGFF----AHKVEHESRTQNGRSFQRTGTLAFERVYT 55 (139)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHSCCSSCCSCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHhCCCCCCCCCCCCHHHHHHHH
Confidence 456677777777655532 3344444444432 23356777766
No 9
>d1vf8a2 d.26.3.1 (A:246-315) Chitinase-like lectin ym1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.90 E-value=3.3e+02 Score=16.69 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=18.3
Q ss_pred eeeecCCCCCCCCccccCCCCCCCCCCccceeeeeech
Q psy6815 10 SRILPITDGGRIGQDVIQPGVASHVEGEDQIKYHKYYQ 47 (263)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~YYQ 47 (263)
||||.+......+-....||...+- ..+.-.++||.
T Consensus 4 s~tL~~~~~~~~gap~~g~g~~G~~--t~~~G~l~y~E 39 (70)
T d1vf8a2 4 TFILSDPSKTGIGAPTISTGPPGKY--TDESGLLAYYE 39 (70)
T ss_dssp EEEESCTTCCSTTCBEEEECCCCTT--TCCTTEEEHHH
T ss_pred ceECCCCccCCCCCccccCCCCCCc--cCCCCeEeHHH
Confidence 6888877665554433334333211 12335566665
No 10
>d2bw3a1 a.270.1.1 (A:79-162) Transposase Hermes, dimerisation domain {House fly (Musca domestica) [TaxId: 7370]}
Probab=2.87 E-value=5.5e+02 Score=16.85 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=20.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhhccC
Q psy6815 86 VINEDCKQERKKLLVEYFTTNLHTQ 110 (263)
Q Consensus 86 ~~~~~~r~~~~~~l~~~l~~~l~~~ 110 (263)
..+.+++++.++..++++....+..
T Consensus 7 ~vs~~~K~k~~~a~~qW~V~nCRp~ 31 (84)
T d2bw3a1 7 TVSADCKKEAIEKCAQWVVRDCRPF 31 (84)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCG
T ss_pred hhhHHhHHHHHHHHHHHHHhcCccc
Confidence 3478899999999999998876653
Done!