RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6815
(263 letters)
>gnl|CDD|165115 PHA02748, PHA02748, viral inexin-like protein; Provisional.
Length = 360
Score = 294 bits (754), Expect = 2e-99
Identities = 109/242 (45%), Positives = 162/242 (66%)
Query: 22 GQDVIQPGVASHVEGEDQIKYHKYYQWVCFVLFFQAMLFYVPRYLWKSWEGGRIKMLVLD 81
+ S ED+++Y+ YYQWV LF QA+ FY+P Y+WK+WEGG++KML ++
Sbjct: 84 VNSTVPDPGVSGDTEEDELRYYGYYQWVFITLFLQAVFFYIPHYIWKAWEGGKMKMLAVE 143
Query: 82 LNCPVINEDCKQERKKLLVEYFTTNLHTQNFYAIRFFICEVLNFVNVVLQIYFMDYFLEG 141
L PV+++DC ++ + LV+YF NLH+ N YA ++F CE+LN +N+V QI FM+ F+
Sbjct: 144 LASPVLSKDCIEKNTQPLVDYFFMNLHSHNAYAYKYFTCELLNLINIVGQIQFMNIFIGE 203
Query: 142 EFSTYGSDVLSFTNMEPENREDPMARVFPKVTKCTFRKYGPSGTIQKFDGLCVLPLNIVN 201
+F YG V+ F ++ +PM R+FP VTKCT+ KYGPSGT + +G+C+L N +N
Sbjct: 204 DFQLYGIYVIFFNQEAGKSMTNPMERLFPTVTKCTYEKYGPSGTPENIEGICLLTQNSLN 263
Query: 202 EKIYVFLWFWFILLTIITALSLVYRVAVIMGPQLRVYLLRIRSRLSSQEQIETIARKCQI 261
EKIYVFLWFWF +L +I+A ++YR+A ++ LR+Y+ R S L+ + I + K QI
Sbjct: 264 EKIYVFLWFWFHILAVISAFVVIYRIATLLSSSLRLYMFRSSSSLNRADDIAVVYNKLQI 323
Query: 262 GD 263
GD
Sbjct: 324 GD 325
>gnl|CDD|216168 pfam00876, Innexin, Innexin. This family includes the drosophila
proteins Ogre and shaking-B, and the C. elegans proteins
Unc-7 and Unc-9. Members of this family are integral
membrane proteins which are involved in the formation of
gap junctions. This family has been named the Innexins.
Length = 341
Score = 282 bits (724), Expect = 4e-95
Identities = 107/249 (42%), Positives = 153/249 (61%), Gaps = 18/249 (7%)
Query: 28 PGVASHVEGEDQIKYHKYYQWVCFVLFFQAMLFYVPRYLWK---SWEGGRIKMLVLDLNC 84
PG + E + KY YYQWV FVLF QA+LFY+P Y+WK SWEGGR+K LV +LN
Sbjct: 68 PGTDPEEDRERERKYITYYQWVPFVLFLQALLFYIPHYIWKLLSSWEGGRLKALVDELNS 127
Query: 85 PVINE-DCKQERKKLLVEYFTTNLHTQN-----FYAIRFFICEVLNFVNVVLQIYFMDYF 138
+++E D +++R K L Y NLH+ N + A +F C++LN +NV+ QI+ ++ F
Sbjct: 128 AILSEPDERKKRIKPLARYLDDNLHSHNRYYGNYLAYLYFFCKLLNLINVIGQIFLLNRF 187
Query: 139 LEGEFSTYGSDVLSFTNMEPENREDPMARVFPKVTKCTFRKYGPSGTIQKFDGLCVLPLN 198
L G+F YG DVL+ + E+ D VFP+VTKC F G++Q + CVLP+N
Sbjct: 188 LGGDFHFYGIDVLAD-LLNGEDWTDSG--VFPRVTKCDFEIRKLGGSVQNYTVQCVLPIN 244
Query: 199 IVNEKIYVFLWFWFILLTIITALSLVYRVAVIMGPQLRV----YLLRIRSRLSSQEQIET 254
I NEKI++FLWFWF+ L II+ LSL+Y +A ++ P RV LLR S+L+ ++
Sbjct: 245 IFNEKIFIFLWFWFVFLAIISVLSLLYWIATLLSPSRRVSFRKKLLRASSKLNPLDKF-- 302
Query: 255 IARKCQIGD 263
+ +I
Sbjct: 303 VRDYLRIDG 311
>gnl|CDD|236962 PRK11718, PRK11718, anti-RNA polymerase sigma 70 factor;
Provisional.
Length = 161
Score = 31.0 bits (71), Expect = 0.30
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 20/62 (32%)
Query: 93 QERKKLLVEYF--------TTNLHTQNFYAIRFFICEVLNFVNVVLQIYFMDYFLEGEFS 144
ER++LLV Y +L N A+ F C++L +DY G F
Sbjct: 24 HERQQLLVAYCKLAGIKPGKESLSLPNEKALDDF-CQLL-----------VDYVSAGHFE 71
Query: 145 TY 146
Y
Sbjct: 72 IY 73
>gnl|CDD|148676 pfam07214, DUF1418, Protein of unknown function (DUF1418). This
family consists of several hypothetical Enterobacterial
proteins of around 100 residues in length. Members of
this family are often described as YbjC. In E. coli the
ybjC gene is located downstream of nfsA (which encodes
the major oxygen-insensitive nitroreductase). It is
thought that nfsA and ybjC form an operon an its
promoter is a class I SoxS-dependent promoter. The
function of this family is unknown.
Length = 96
Score = 28.2 bits (63), Expect = 1.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 195 LPLNIVNEKIYVFLWFWFILLTIITALSLVYRVAVIMGPQL 235
LP I + + + F + L I A+ +V+RVA PQL
Sbjct: 35 LPGPIASPTAAILMIFLGVGLMIPAAVVVVWRVAQGFAPQL 75
>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4;
Provisional.
Length = 915
Score = 29.6 bits (66), Expect = 2.0
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 135 MDYFLEGEFSTYGSDVLSFTNMEPENREDPMARVFPKVTKCTFRKYGPS--GTIQKFDGL 192
+D L F+ S S ++E N P AR+ K PS ++ +F G
Sbjct: 177 LDKVLVKLFNELLSKHYSDLSLE-NNSFFPRARLMNKPVSDCVGNLEPSMADSLVQFSGT 235
Query: 193 CVLPLNIVNE 202
V IV E
Sbjct: 236 VVRQTWIVPE 245
>gnl|CDD|177875 PLN02230, PLN02230, phosphoinositide phospholipase C 4.
Length = 598
Score = 29.3 bits (65), Expect = 2.2
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 127 NVVLQIYFMDYFLEGEFSTYGSDVLSFTNMEPENREDPMARVFPKVTKCTFRKYGP 182
N + ++ + LE ++YG+DV+ FT R++PK T+ Y P
Sbjct: 357 NKIRRLSLSEQLLEKAVASYGADVIRFTQKN-------FLRIYPKGTRFNSSNYKP 405
>gnl|CDD|237738 PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional.
Length = 497
Score = 29.0 bits (66), Expect = 2.7
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 37 EDQIKYHKYYQWVCF 51
D+I YHK+ Q++ F
Sbjct: 183 ADEILYHKFLQYLFF 197
>gnl|CDD|178538 PLN02952, PLN02952, phosphoinositide phospholipase C.
Length = 599
Score = 28.4 bits (63), Expect = 4.4
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 126 VNVVLQIYFMDYFLEGEFSTYGSDVLSFTNMEPENREDPMARVFPKVTKCTFRKYGP 182
V+ V ++ + LE +T G DV+ FT + + R++PK T+ T Y P
Sbjct: 357 VDKVRRLSLSEQELEKAATTNGQDVVRFT-------QRNILRIYPKGTRITSSNYKP 406
>gnl|CDD|218041 pfam04353, Rsd_AlgQ, Regulator of RNA polymerase sigma(70) subunit,
Rsd/AlgQ. This family includes bacterial
transcriptional regulators that are thought to act
through an interaction with the conserved region 4 of
the sigma(70) subunit of RNA polymerase. The Pseudomonas
aeruginosa homologue, AlgQ, positively regulates
virulence gene expression and is associated with the
mucoid phenotype observed in Pseudomonas aeruginosa
isolates from cystic fibrosis patients.
Length = 153
Score = 27.5 bits (62), Expect = 5.1
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 20/62 (32%)
Query: 93 QERKKLLVEYFT--------TNLHTQNFYAIRFFICEVLNFVNVVLQIYFMDYFLEGEFS 144
+ER++LLV Y + A++ F C++L +DY G F
Sbjct: 24 EERQQLLVAYCKLAGLKPYSAEDTLPSAKALQNF-CQLL-----------VDYVSAGHFE 71
Query: 145 TY 146
Y
Sbjct: 72 IY 73
>gnl|CDD|238938 cd01980, Chlide_reductase_Y, Chlide_reductase_Y : Y subunit of
chlorophyllide (chlide) reductase (BchY). Chlide
reductase participates in photosynthetic pigment
synthesis playing a role in the conversion of
chlorophylls(Chl) into bacteriochlorophylls (BChl).
Chlide reductase catalyzes the reduction of the B-ring
of the tetrapyrolle. Chlide reductase is a three subunit
enzyme (subunits are designated BchX, BchY and BchZ).
The similarity between these three subunits and the
subunits for nitrogenase suggests that BchX serves as an
electron donor for the BchY-BchY catalytic subunits.
Length = 416
Score = 27.9 bits (62), Expect = 6.7
Identities = 8/32 (25%), Positives = 10/32 (31%)
Query: 7 GINSRILPITDGGRIGQDVIQPGVASHVEGED 38
G+ +LP G V P H E
Sbjct: 107 GVAEELLPKQIDGVRVILVRGPAFPIHSHPEA 138
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease;
Provisional.
Length = 469
Score = 27.8 bits (62), Expect = 6.9
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 192 LCV---LPLNIVNEKIYVFLWFWFILLTIITALSLV 224
V L LN+ K++ + FWF ++ I+ ++L+
Sbjct: 140 AVVLLLLSLNLATVKMFGEMEFWFAMIKIVAIVALI 175
>gnl|CDD|220511 pfam09997, DUF2238, Predicted membrane protein (DUF2238). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 143
Score = 26.7 bits (60), Expect = 7.8
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 209 WFWFILLTIITALSLVYR-----VAVIMGPQL 235
W +F+ + I A+S Y A+++G +
Sbjct: 91 WLFFLAVCAILAISAFYELIEWWAALLLGGEA 122
>gnl|CDD|219507 pfam07670, Gate, Nucleoside recognition. This region in the
nucleoside transporter proteins are responsible for
determining nucleoside specificity in the human CNT1 and
CNT2 proteins. In the FeoB proteins, which are believed
to be Fe2+ transporters, it includes the membrane pore
region, so the function of this region is likely to be
more general than just nucleoside specificity. This
family may represent the pore and gate, with a wide
potential range of specificity. Hence its name 'Gate'.
Length = 104
Score = 26.4 bits (59), Expect = 8.0
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 210 FWFILLTIITALSLVYRVAVIMGPQLR 236
F+ +L++I+ L+ R+ ++ P +R
Sbjct: 10 FFSVLISILEYSGLLARIGKLLDPLMR 36
>gnl|CDD|147785 pfam05822, UMPH-1, Pyrimidine 5'-nucleotidase (UMPH-1). This
family consists of several eukaryotic pyrimidine
5'-nucleotidase proteins. P5'N-1, also known as uridine
monophosphate hydrolase-1 (UMPH-1), is a member of a
large functional group of enzymes, characterized by the
ability to dephosphorylate nucleic acids. P5'N-1
catalyzes the dephosphorylation of pyrimidine nucleoside
monophosphates to the corresponding nucleosides.
Deficiencies in this proteins function can lead to
several different disorders in humans.
Length = 246
Score = 27.3 bits (61), Expect = 8.5
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 83 NCPVINEDCKQERKKLLVEYF 103
NC I E+C+++ +L +Y+
Sbjct: 22 NCKSITEECRKKLVELYHKYY 42
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.144 0.456
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,666,625
Number of extensions: 1305799
Number of successful extensions: 1856
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1851
Number of HSP's successfully gapped: 33
Length of query: 263
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 168
Effective length of database: 6,723,972
Effective search space: 1129627296
Effective search space used: 1129627296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.2 bits)