RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy6815
         (263 letters)



>2p7v_A Regulator of sigma D; RSD, regulator of sigma 70, sigma 70 domain
           4, transcription, regulation, helix-turn-helix; 2.60A
           {Escherichia coli}
          Length = 158

 Score = 31.8 bits (72), Expect = 0.099
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 23/92 (25%)

Query: 93  QERKKLLVEYFT--------TNLHTQNFYAIRFFICEVLNFVNVVLQIYFMDYFLEGEFS 144
             RK LLV Y+          +    N  A+  F C+ L           +DY   G FS
Sbjct: 24  HVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDF-CQSL-----------VDYLSAGHFS 71

Query: 145 TYGSDVLSFTNMEPENREDPMARVFPKVTKCT 176
            Y   +     +E   +    A+++P++   T
Sbjct: 72  IYERIL---HKLEGNGQLARAAKIWPQLEANT 100


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.4 bits (68), Expect = 0.68
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 28/98 (28%)

Query: 49   VCF--VLFFQA---MLFY--------VPRYLWKSWEGGRIKMLVLDLNCPVINEDCKQER 95
                 V+  ++   ++FY        VPR      E GR    ++ +N   +     QE 
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAVPRD-----ELGRSNYGMIAINPGRVAASFSQEA 1825

Query: 96   KKLLVEYFTTNLHTQNFYAIRFFICEVLNFVNVVLQIY 133
             + +VE       T        ++ E++N+ NV  Q Y
Sbjct: 1826 LQYVVERVGK--RTG-------WLVEIVNY-NVENQQY 1853



 Score = 30.0 bits (67), Expect = 0.94
 Identities = 31/162 (19%), Positives = 54/162 (33%), Gaps = 51/162 (31%)

Query: 110 QNFYAIRFFICEVLNFVNVVLQIYFMDYFLEGEFSTYGSDVLSFTNME--PENRED---P 164
           ++F+        VL F+ V                 Y +  L  + +E   EN E    P
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCY------------EAYPNTSLPPSILEDSLENNEGVPSP 337

Query: 165 MARVFPKVTKCTFRKYGPSGTIQKFDGLCVLPLNIVNEKIYVFLWFWFILLTIITALSLV 224
           M  +   +T+   + Y     + K +    LP     +++ +               SLV
Sbjct: 338 MLSI-SNLTQEQVQDY-----VNKTNS--HLP---AGKQVEI---------------SLV 371

Query: 225 --YRVAVIMGPQLRVYLLRIRSRLSS------QEQIETIARK 258
              +  V+ GP   +Y L +  R +       Q +I    RK
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.0 bits (61), Expect = 2.2
 Identities = 8/23 (34%), Positives = 9/23 (39%), Gaps = 8/23 (34%)

Query: 92  KQERKKLLVEYFTTNLHTQNFYA 114
           KQ  KKL       +L     YA
Sbjct: 19  KQALKKL-----QASL---KLYA 33


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.144    0.456 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,147,417
Number of extensions: 240966
Number of successful extensions: 502
Number of sequences better than 10.0: 1
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 6
Length of query: 263
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 171
Effective length of database: 4,133,061
Effective search space: 706753431
Effective search space used: 706753431
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.8 bits)