RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6815
         (263 letters)



>d1ia9a_ d.144.1.5 (A:) Trp Ca-channel kinase domain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 278

 Score = 29.1 bits (65), Expect = 0.55
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 10/84 (11%)

Query: 89  EDCKQERK-KLLVEYFTTNLHTQNFYAIRFF-ICEVLNFVNVVLQIYFMDYFLEGEFSTY 146
            + +Q+R  + L   F         Y+ RF  +  +        Q + ++  + GEF  Y
Sbjct: 121 REIQQQRAAQKLTFAFNQMKPKSIPYSPRFLEVFLLYCHSAG--QWFAVEECMTGEFRKY 178

Query: 147 GSDVLSFTNMEPENREDPMARVFP 170
            +      N   E           
Sbjct: 179 NN------NNGDEIIPTNTLEEIM 196


>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome
          bc1 complex (Ubiquinol-cytochrome c reductase),
          transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
          Length = 46

 Score = 23.1 bits (50), Expect = 7.4
 Identities = 2/21 (9%), Positives = 10/21 (47%)

Query: 47 QWVCFVLFFQAMLFYVPRYLW 67
          + +  +     +++ + R+ W
Sbjct: 12 KMLLMMGLLLPLVYAMKRHKW 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.144    0.456 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,038,600
Number of extensions: 48421
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 5
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (23.9 bits)