Query psy6816
Match_columns 273
No_of_seqs 126 out of 402
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 19:08:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02748 viral inexin-like pro 100.0 1.7E-60 3.6E-65 451.6 19.9 198 7-270 159-356 (360)
2 PF00876 Innexin: Innexin; In 100.0 5.7E-54 1.2E-58 401.1 18.2 192 7-268 141-347 (348)
3 cd00929 Cyt_c_Oxidase_VIIc Cyt 47.7 27 0.00059 25.0 3.3 32 171-202 11-42 (46)
4 PF15202 Adipogenin: Adipogeni 22.5 1.9E+02 0.0041 23.0 4.5 36 174-209 7-42 (81)
5 PF02935 COX7C: Cytochrome c o 15.7 2.8E+02 0.006 20.9 4.0 26 170-196 28-53 (65)
6 PF05545 FixQ: Cbb3-type cytoc 15.5 3.1E+02 0.0066 19.0 4.0 24 182-205 8-31 (49)
7 TIGR01921 DAP-DH diaminopimela 14.8 51 0.0011 32.1 -0.2 13 99-111 268-280 (324)
8 PF05075 DUF684: Protein of un 13.6 1.2E+02 0.0025 29.3 1.9 53 34-97 113-171 (345)
9 COG4736 CcoQ Cbb3-type cytochr 13.1 3.5E+02 0.0075 20.5 3.9 35 183-220 9-43 (60)
10 TIGR02972 TMAO_torE trimethyla 13.1 5.6E+02 0.012 18.7 4.7 30 179-208 11-43 (47)
No 1
>PHA02748 viral inexin-like protein; Provisional
Probab=100.00 E-value=1.7e-60 Score=451.59 Aligned_cols=198 Identities=37% Similarity=0.780 Sum_probs=183.7
Q ss_pred HHHHHHHHHhcccCceehhHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHhhhhhhhcccCCCCCCCCCCCCccc
Q psy6816 7 LLLSNYLFSLLQSHSNYVTKYFACEFLCFLNIIVQMYAMNKFFDGEFINYGMRVLTFSEQAQEDRVDPMSSSMRPHGLCI 86 (273)
Q Consensus 7 ~~l~~y~~~~~~~~~~~~~~Y~~~K~L~l~Nii~Q~~lm~~FLg~~f~~~G~~vl~~~~~~~~d~~~p~~~~~~~~g~~~ 86 (273)
-.|++|+.++++.|+.|+..|++||+||++|+++|+++||+|||+++..||++|+.+...+++
T Consensus 159 ~~l~~y~~~~l~~h~~y~~~Y~~~klL~l~Nvi~Qi~lmn~FLg~~f~~yG~~vl~~~~~~~~----------------- 221 (360)
T PHA02748 159 QPLVDYFFMNLHSHNAYAYKYFTCELLNLINIVGQIQFMNIFIGEDFQLYGIYVIFFNQEAGK----------------- 221 (360)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhccHHHHhhhhhccc-----------------
Confidence 468999999999999999999999999999999999999999999999999999986543333
Q ss_pred ccccccccccccccccCCCCcccccccccccccccchhhhhhhhhcCCCCCCCCCcccCCeeeeeeeeeeccCCCceeEe
Q psy6816 87 SQSYKVYFPQVWCFRINSNPRFLVYTSTKYSQRKDLHFHLVLVCYAFCPGWPDPMVYVFPRVTKCTFHKYGASGSIQTHD 166 (273)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~q~~~~~~~~~l~~~~~g~~W~~~~s~~FPRvT~Cdf~~~~~~G~iq~~t 166 (273)
+|++|++++|||||+|||+++|++||+|+||
T Consensus 222 -------------------------------------------------~~~~~~s~~FPrvT~C~f~~~~~~G~~~~~~ 252 (360)
T PHA02748 222 -------------------------------------------------SMTNPMERLFPTVTKCTYEKYGPSGTPENIE 252 (360)
T ss_pred -------------------------------------------------cccCcccCccCcceeeeeeeecCCCCcceee
Confidence 3333339999999999999999999999999
Q ss_pred eEEeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHhhhccCCChhhHHHHhhcCCCCcEehhHHH
Q psy6816 167 SLCILPLNIVNEKTYIFIWFWFVMLFVLVGLQVVYRLALIFCPKVRPLVMRTKNRLVPHEIADALCRKTSLGDWWILYML 246 (273)
Q Consensus 167 ~qCVLpiNi~NEKIfifLWFWfv~LavlTilslIyWi~~~~~ps~R~~fIr~~l~~~~~~~l~~~v~~~~~dg~flL~~l 246 (273)
+|||||+||+|||||+|||||+++|+++|+++++||++++++|+.|.++++...+..+.++++.+.++++.||||+||||
T Consensus 253 ~qCVLpiN~~NEKIfiFLWFW~~~lav~t~~~~~~~i~~~~~~~~R~~~ir~~~~~~~~~~~~~v~~~l~~ddwFlL~~l 332 (360)
T PHA02748 253 GICLLTQNSLNEKIYVFLWFWFHILAVISAFVVIYRIATLLSSSLRLYMFRSSSSLNRADDIAVVYNKLQIGDWFLLHML 332 (360)
T ss_pred eEEEechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHhhccCCHHHHHHHHHhCCcCCEEEhhHh
Confidence 99999999999999999999999999999999999999999999999999998888888888888999999999999999
Q ss_pred HhhcChHHHHHHHHHHHHHccCCC
Q psy6816 247 ERNIDPVIYRDIAAELAKKIEAPK 270 (273)
Q Consensus 247 ~~N~g~~v~~eiv~~L~~~~~~~~ 270 (273)
++|+|+++++|++.+||++++...
T Consensus 333 ~~N~~~~~~~eli~~L~~~~~~~~ 356 (360)
T PHA02748 333 RKNINPLAYKELISRLAQHFDVSV 356 (360)
T ss_pred hhhCChHHHHHHHHHHHHHccccc
Confidence 999999999999999999997543
No 2
>PF00876 Innexin: Innexin; InterPro: IPR000990 The pannexin family combines invertebrate gap junction proteins and their vertebrate homologs. These proteins have been named innexins []. Gap junctions are composed of membrane proteins, which form a channel permeable for ions and small molecules connecting cytoplasm of adjacent cells. Although gap junctions provide similar functions in all multicellular organisms, until recently it was believed that vertebrates and invertebrates use unrelated proteins for this purpose. While the connexins family of gap junction proteins is well- characterised in vertebrates, no homologs have been found in invertebrates. In turn, gap junction molecules with no sequence homology to connexins have been identified in insects and nematodes. It has been suggested that these proteins are specific invertebrate gap junctions, and they were thus named innexins (invertebrate analog of connexins) []. As innexin homologs were recently identified in other taxonomic groups including vertebrates, indicating their ubiquitous distribution in the animal kingdom, they were called pannexins (from the Latin pan-all, throughout, and nexus-connection, bond) [, , ]. Genomes of vertebrates carry probably a conserved set of 3 pannexin paralogs (PANX1, PANX2 and PANX3). Invertebrate genomes may contain more than a dozen pannexin (innexin) genes. Vinnexins, viral homologs of pannexins/innexins, were identified in Polydnaviruses that occur in obligate symbiotic associations with parasitoid wasps. It was suggested that virally encoded vinnexin proteins may function to alter gap junction proteins in infected host cells, possibly modifying cell-cell communication during encapsulation responses in parasitized insects [, ]. Structurally pannexins are simillar to connexins. Both types of protein consist of a cytoplasmic N-terminal domain, followed by four transmembrane segments that delimit two extracellular and one cytoplasmic loops; the C- terminal domain is cytoplasmic.; GO: 0005921 gap junction
Probab=100.00 E-value=5.7e-54 Score=401.09 Aligned_cols=192 Identities=31% Similarity=0.643 Sum_probs=175.4
Q ss_pred HHHHHHHHHhcccCcee--------hhHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHhhhhhhhcccCCCCCCC
Q psy6816 7 LLLSNYLFSLLQSHSNY--------VTKYFACEFLCFLNIIVQMYAMNKFFDGEFINYGMRVLTFSEQAQEDRVDPMSSS 78 (273)
Q Consensus 7 ~~l~~y~~~~~~~~~~~--------~~~Y~~~K~L~l~Nii~Q~~lm~~FLg~~f~~~G~~vl~~~~~~~~d~~~p~~~~ 78 (273)
-.+++|+.+.++.|+.+ +..|++||+||++|+++|+++|++|||+++..||.+++.++.
T Consensus 141 ~~l~~~l~~~l~~~~~~~~~~g~~l~~~Yl~~K~L~l~n~i~Q~~ll~~fLg~~~~~~G~~~~~~~~------------- 207 (348)
T PF00876_consen 141 EKLARYLERYLKQHRRYKKRSGNYLTFLYLFCKLLYLINVIGQIFLLNAFLGGDFYFWGFEVLSDLL------------- 207 (348)
T ss_pred HHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHHHHHHhhh-------------
Confidence 46899999999999888 999999999999999999999999999999999999998542
Q ss_pred CCCCCcccccccccccccccccccCCCCcccccccccccccccchhhhhhhhhcCCCCCCCCCcccCCeeeeeeeeeecc
Q psy6816 79 MRPHGLCISQSYKVYFPQVWCFRINSNPRFLVYTSTKYSQRKDLHFHLVLVCYAFCPGWPDPMVYVFPRVTKCTFHKYGA 158 (273)
Q Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~q~~~~~~~~~l~~~~~g~~W~~~~s~~FPRvT~Cdf~~~~~ 158 (273)
.|++|++ +++|||||+|||++| .
T Consensus 208 ------------------------------------------------------~g~~w~~--s~~FPrvt~Cdf~vr-~ 230 (348)
T PF00876_consen 208 ------------------------------------------------------NGRDWQE--SGVFPRVTFCDFEVR-Q 230 (348)
T ss_pred ------------------------------------------------------hhhhhcc--CCCCCCcceechhhh-h
Confidence 2678999 779999999999974 7
Q ss_pred CCCceeEeeEEeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHhhhccCCC------hhhHHHHh
Q psy6816 159 SGSIQTHDSLCILPLNIVNEKTYIFIWFWFVMLFVLVGLQVVYRLALIFCPKVRPLVMRTKNRLVP------HEIADALC 232 (273)
Q Consensus 159 ~G~iq~~t~qCVLpiNi~NEKIfifLWFWfv~LavlTilslIyWi~~~~~ps~R~~fIr~~l~~~~------~~~l~~~v 232 (273)
.|++|+||+|||||+||+|||||+|||||+++|+++|++|+++|++++++++.|..++++.++..+ ++..++++
T Consensus 231 lg~~~~~tvqCvL~iN~~NEKIfifLWfW~v~l~vit~~~~i~w~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~fv 310 (348)
T PF00876_consen 231 LGNVQRHTVQCVLPINMFNEKIFIFLWFWFVFLAVITVLSLIYWIFRLFSPSSRRSFIKQLLRLADSFSPKDKRLLDRFV 310 (348)
T ss_pred cCCccceeEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHhCCCccccchHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999998887532 22355555
Q ss_pred -hcCCCCcEehhHHHHhhcChHHHHHHHHHHHHHccC
Q psy6816 233 -RKTSLGDWWILYMLERNIDPVIYRDIAAELAKKIEA 268 (273)
Q Consensus 233 -~~~~~dg~flL~~l~~N~g~~v~~eiv~~L~~~~~~ 268 (273)
++++.||||+||||++|+|+++++|++++||++|++
T Consensus 311 ~~~L~~Dg~flL~~i~~n~g~~v~~el~~~L~~~~~~ 347 (348)
T PF00876_consen 311 NDYLRPDGVFLLRLIAKNAGDIVARELVEELWERYKE 347 (348)
T ss_pred HhccCCCCEeHHHHHHHhCChHHHHHHHHHHHHHHhh
Confidence 789999999999999999999999999999999976
No 3
>cd00929 Cyt_c_Oxidase_VIIc Cytochrome c oxidase subunit VIIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIc subunit is found only in eukaryotes and its specific function remains unclear. Peroxide inactivation of bovine CcO coincides with the direct oxidation of tryptophan (W19) within subunit VIIc, along with other structural changes in other subunits.
Probab=47.71 E-value=27 Score=25.04 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=23.5
Q ss_pred eeccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6816 171 LPLNIVNEKTYIFIWFWFVMLFVLVGLQVVYR 202 (273)
Q Consensus 171 LpiNi~NEKIfifLWFWfv~LavlTilslIyW 202 (273)
||-|+=|.+++...|+|+..+....=+-+.+|
T Consensus 11 LPF~~~nk~~~~~~~~~ffg~GF~~PF~i~~~ 42 (46)
T cd00929 11 LPFSVTNKWRLTALFHLFFGSGFSAPFIVVRH 42 (46)
T ss_pred CCcccCccchHHHHHHHHHHHHHhhhHHHHHH
Confidence 89999999998888888766665554444443
No 4
>PF15202 Adipogenin: Adipogenin
Probab=22.48 E-value=1.9e+02 Score=22.98 Aligned_cols=36 Identities=22% Similarity=0.531 Sum_probs=29.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy6816 174 NIVNEKTYIFIWFWFVMLFVLVGLQVVYRLALIFCP 209 (273)
Q Consensus 174 Ni~NEKIfifLWFWfv~LavlTilslIyWi~~~~~p 209 (273)
-++|+-.|-||=||+..=..+-.+-+|.|+--+++.
T Consensus 7 plvndltfsflvfwlclpv~lllfl~ivwlrfllsq 42 (81)
T PF15202_consen 7 PLVNDLTFSFLVFWLCLPVGLLLFLLIVWLRFLLSQ 42 (81)
T ss_pred chhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 468999999999999887777777788887665554
No 5
>PF02935 COX7C: Cytochrome c oxidase subunit VIIc; InterPro: IPR004202 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. This entry represents cytochrome C subunit 7C. The yeast member of this family is called cytochrome C subunit 8P.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABL_Y 3ABM_L 2EIM_L 3ASO_L 3AG3_Y 3AG1_Y 1OCC_Y 2DYS_Y 2OCC_L 1V54_L ....
Probab=15.68 E-value=2.8e+02 Score=20.93 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=17.8
Q ss_pred eeeccchhhHHHHHHHHHHHHHHHHHH
Q psy6816 170 ILPLNIVNEKTYIFIWFWFVMLFVLVG 196 (273)
Q Consensus 170 VLpiNi~NEKIfifLWFWfv~LavlTi 196 (273)
-||-|+-| |+.+.+.+|..+..-..+
T Consensus 28 NLPF~~~n-K~~~~~~~~~f~g~GF~~ 53 (65)
T PF02935_consen 28 NLPFNVKN-KWPFAVKFWGFFGSGFAA 53 (65)
T ss_dssp SSSS--SS-HHHHHHHHHHHHHHHHHH
T ss_pred cccccCcc-hhHHHHHHHHHHHHHHHh
Confidence 58999999 888878888776655443
No 6
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=15.53 E-value=3.1e+02 Score=19.05 Aligned_cols=24 Identities=17% Similarity=0.004 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy6816 182 IFIWFWFVMLFVLVGLQVVYRLAL 205 (273)
Q Consensus 182 ifLWFWfv~LavlTilslIyWi~~ 205 (273)
-++-.|..++.++..+.+++|.++
T Consensus 8 ~~~~~~~~v~~~~~F~gi~~w~~~ 31 (49)
T PF05545_consen 8 GFARSIGTVLFFVFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 355667778888888889999885
No 7
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=14.75 E-value=51 Score=32.06 Aligned_cols=13 Identities=23% Similarity=0.582 Sum_probs=10.4
Q ss_pred ccccCCCCccccc
Q psy6816 99 CFRINSNPRFLVY 111 (273)
Q Consensus 99 ~~~~~~~~~~~~~ 111 (273)
.-|++|||+||-.
T Consensus 268 ~~~~~~np~~ta~ 280 (324)
T TIGR01921 268 NLKLDRNPDFTAS 280 (324)
T ss_pred EEecCCCHHHHHH
Confidence 3478999999865
No 8
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=13.62 E-value=1.2e+02 Score=29.33 Aligned_cols=53 Identities=19% Similarity=0.272 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhCCC---cccchHHHHhhhhhhhcccCCCCCCCCCCCCccccccccc---ccccc
Q psy6816 34 CFLNIIVQMYAMNKFFDGE---FINYGMRVLTFSEQAQEDRVDPMSSSMRPHGLCISQSYKV---YFPQV 97 (273)
Q Consensus 34 ~l~Nii~Q~~lm~~FLg~~---f~~~G~~vl~~~~~~~~d~~~p~~~~~~~~g~~~~~~~~~---~~~~~ 97 (273)
.+-.+++|+.++..|-.|= -..||.+-|..-...-.+..+ .|++.|+. |||+.
T Consensus 113 ii~~vl~q~l~lEafa~Gl~~~~n~~~~~~L~e~~~~~~~~~~-----------~w~~~Y~~~~~yWp~~ 171 (345)
T PF05075_consen 113 IIDGVLGQLLFLEAFASGLFKDKNMYDPDRLIEKIEEINEKMD-----------KWKEEYKKDESYWPDN 171 (345)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH-----------HHHHhhccccccchHH
Confidence 3457799999999999864 446888776543222222222 57888854 88763
No 9
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=13.11 E-value=3.5e+02 Score=20.53 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHhhhc
Q psy6816 183 FIWFWFVMLFVLVGLQVVYRLALIFCPKVRPLVMRTKN 220 (273)
Q Consensus 183 fLWFWfv~LavlTilslIyWi~~~~~ps~R~~fIr~~l 220 (273)
|.-.|+++.+.+-.+..++|+++ |+.|.++=+...
T Consensus 9 ~a~a~~t~~~~l~fiavi~~ayr---~~~K~~~d~aa~ 43 (60)
T COG4736 9 FADAWGTIAFTLFFIAVIYFAYR---PGKKGEFDEAAR 43 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---ccchhhHHHHhc
Confidence 56678888888888888888777 776666555433
No 10
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=13.10 E-value=5.6e+02 Score=18.70 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=21.8
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Q psy6816 179 KTYIFIWFW---FVMLFVLVGLQVVYRLALIFC 208 (273)
Q Consensus 179 KIfifLWFW---fv~LavlTilslIyWi~~~~~ 208 (273)
|.|+||=+= .+.+++++...++.|+.+++.
T Consensus 11 ~~flfl~v~l~PiLsV~~Vg~YGF~vWm~Q~~~ 43 (47)
T TIGR02972 11 KALGFIIVVLFPILSVAGIGGYGFIIWMIQAFG 43 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 556655443 357788888999999999863
Done!