Query psy6816
Match_columns 273
No_of_seqs 126 out of 402
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 19:08:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j0g_M E3 protein; alphavirus, 8.8 1.7E+02 0.0058 21.3 2.0 22 242-263 30-51 (59)
2 2zxj_A Transcriptional regulat 5.8 1.9E+02 0.0064 22.5 1.1 25 240-264 42-67 (120)
3 2fj6_A Hypothetical UPF0346 pr 5.5 1.3E+02 0.0044 23.1 -0.1 30 240-269 41-70 (82)
4 2z9m_A Response regulator YYCF 5.4 1.9E+02 0.0065 21.7 0.8 25 240-264 42-67 (120)
5 3b8e_G Na+/K+ ATPase gamma sub 5.3 1.9E+02 0.0066 18.2 0.7 14 118-131 5-18 (29)
6 1i3z_A EWS/FLI1 activated tran 4.9 2.9E+02 0.01 20.0 1.6 29 223-251 10-38 (103)
7 1v54_L VIIIA, cytochrome C oxi 4.7 8.5E+02 0.029 16.4 4.2 20 171-191 11-30 (47)
8 3q9v_A DNA-binding response re 4.6 2E+02 0.0068 22.5 0.5 26 240-265 66-92 (133)
9 2ekx_A Cytoplasmic tyrosine-pr 4.6 3E+02 0.01 20.3 1.5 24 223-246 18-41 (110)
10 3m4x_A NOL1/NOP2/SUN family pr 4.5 2E+02 0.007 27.4 0.6 13 89-101 444-456 (456)
No 1
>3j0g_M E3 protein; alphavirus, bioweapon, VEEV; 4.80A {Venezuelan equine encephalitis virus}
Probab=8.83 E-value=1.7e+02 Score=21.28 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=18.6
Q ss_pred hhHHHHhhcChHHHHHHHHHHH
Q psy6816 242 ILYMLERNIDPVIYRDIAAELA 263 (273)
Q Consensus 242 lL~~l~~N~g~~v~~eiv~~L~ 263 (273)
-|+||+.|++.=-|.|+++..-
T Consensus 30 tL~mLe~Nvd~pgY~~LL~a~l 51 (59)
T 3j0g_M 30 TLAMLSVNVDNPGYDELLEAAV 51 (59)
T ss_dssp HHHHHHHTSSSTTHHHHHHHHH
T ss_pred HHHHHHHhCCCccHHHHHHHHh
Confidence 4899999999999999887654
No 2
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=5.81 E-value=1.9e+02 Score=22.50 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=20.2
Q ss_pred EehhHHHHhhcChHHHH-HHHHHHHH
Q psy6816 240 WWILYMLERNIDPVIYR-DIAAELAK 264 (273)
Q Consensus 240 ~flL~~l~~N~g~~v~~-eiv~~L~~ 264 (273)
.-+|.+|..|.|.++.+ +|+..+|.
T Consensus 42 ~~lL~~L~~~~g~vvsre~L~~~vWg 67 (120)
T 2zxj_A 42 FELFHYLSKHMGQVMTREHLLQTVWG 67 (120)
T ss_dssp HHHHHHHHTTTTCCBCHHHHHHHHHC
T ss_pred HHHHHHHHhCCCceEcHHHHHHHhcC
Confidence 56889999999988876 57788884
No 3
>2fj6_A Hypothetical UPF0346 protein YOZE; SR391, structure, autostructure, northeast structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.60.15.1
Probab=5.50 E-value=1.3e+02 Score=23.05 Aligned_cols=30 Identities=23% Similarity=0.019 Sum_probs=25.8
Q ss_pred EehhHHHHhhcChHHHHHHHHHHHHHccCC
Q psy6816 240 WWILYMLERNIDPVIYRDIAAELAKKIEAP 269 (273)
Q Consensus 240 ~flL~~l~~N~g~~v~~eiv~~L~~~~~~~ 269 (273)
--|...|+.|++-...-++..++|+.|.+.
T Consensus 41 ~eIs~Yle~n~~y~~sm~iFD~~We~Y~~~ 70 (82)
T 2fj6_A 41 HEISSYLELNADYLHTMATFDEAWDQYESE 70 (82)
T ss_dssp HHHHHHHHTSHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccchHHHHHHHHHHHHHH
Confidence 457888999999999999999999999653
No 4
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=5.39 E-value=1.9e+02 Score=21.74 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=19.3
Q ss_pred EehhHHHHhhcChHHHH-HHHHHHHH
Q psy6816 240 WWILYMLERNIDPVIYR-DIAAELAK 264 (273)
Q Consensus 240 ~flL~~l~~N~g~~v~~-eiv~~L~~ 264 (273)
.-+|.+|..|.|.++.+ +|+..+|.
T Consensus 42 ~~lL~~L~~~~g~vvsr~~L~~~vW~ 67 (120)
T 2z9m_A 42 FELFHYLSKHMGQVMTREHLLQTVWG 67 (120)
T ss_dssp HHHHHHHHTTTTCCEEHHHHHHHHHC
T ss_pred HHHHHHHHHCCCceEcHHHHHHHHhC
Confidence 45788888888887764 67888885
No 5
>3b8e_G Na+/K+ ATPase gamma subunit transcript variant A; P-type ATPase, cation pump, membrane protein, hydrolase, ATP-binding, calcium transport; HET: PC1; 3.50A {Sus scrofa} PDB: 3kdp_G*
Probab=5.30 E-value=1.9e+02 Score=18.17 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=10.7
Q ss_pred ccccchhhhhhhhh
Q psy6816 118 QRKDLHFHLVLVCY 131 (273)
Q Consensus 118 q~~~~~~~~~l~~~ 131 (273)
|.+|+.|+++|++-
T Consensus 5 RigGLi~a~vlf~~ 18 (29)
T 3b8e_G 5 RNGGLIFAALAFIV 18 (29)
T ss_dssp STTSSGGGGSSSTT
T ss_pred eeccchHHHHHHHH
Confidence 45688999998774
No 6
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=4.90 E-value=2.9e+02 Score=20.00 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=19.0
Q ss_pred CChhhHHHHhhcCCCCcEehhHHHHhhcC
Q psy6816 223 VPHEIADALCRKTSLGDWWILYMLERNID 251 (273)
Q Consensus 223 ~~~~~l~~~v~~~~~dg~flL~~l~~N~g 251 (273)
.+.++.+.+++.-+.||.|++|-=+...|
T Consensus 10 isR~~Ae~lL~~~~~~G~FLVR~S~~~~g 38 (103)
T 1i3z_A 10 LTKRECEALLLKGGVDGNFLIRDSESVPG 38 (103)
T ss_dssp CCHHHHHHHHHTTCSTTEEEEEECSSSTT
T ss_pred CCHHHHHHHHhhcCCCceEEEEeCCCCCC
Confidence 45567777776656889998885443333
No 7
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=4.71 E-value=8.5e+02 Score=16.39 Aligned_cols=20 Identities=10% Similarity=0.239 Sum_probs=13.5
Q ss_pred eeccchhhHHHHHHHHHHHHH
Q psy6816 171 LPLNIVNEKTYIFIWFWFVML 191 (273)
Q Consensus 171 LpiNi~NEKIfifLWFWfv~L 191 (273)
||-|+-|.+++. +++|..+.
T Consensus 11 LPF~~~nk~~~~-~~~~~f~g 30 (47)
T 1v54_L 11 IPFSVENKWRLL-AMMTLFFG 30 (47)
T ss_dssp SSSCCSSHHHHH-HHHHHHHH
T ss_pred CCcCCCcccHHH-HHHHHHHH
Confidence 788888888765 46665433
No 8
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=4.63 E-value=2e+02 Score=22.49 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=20.8
Q ss_pred EehhHHHHhhcChHHHH-HHHHHHHHH
Q psy6816 240 WWILYMLERNIDPVIYR-DIAAELAKK 265 (273)
Q Consensus 240 ~flL~~l~~N~g~~v~~-eiv~~L~~~ 265 (273)
.-+|.+|..|.|.++.+ +|+.++|..
T Consensus 66 ~~LL~~L~~~~g~vvsre~L~~~vW~~ 92 (133)
T 3q9v_A 66 FDILALLIRQPGRVYSRQEIGQEIWQG 92 (133)
T ss_dssp HHHHHHHTTSTTCEEEHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCceEcHHHHHHHHcCC
Confidence 46888999999987765 588889964
No 9
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=4.58 E-value=3e+02 Score=20.31 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=17.3
Q ss_pred CChhhHHHHhhcCCCCcEehhHHH
Q psy6816 223 VPHEIADALCRKTSLGDWWILYML 246 (273)
Q Consensus 223 ~~~~~l~~~v~~~~~dg~flL~~l 246 (273)
.++++.+.+++.-+.||.||+|-=
T Consensus 18 isR~~Ae~lL~~~~~~G~FLVR~S 41 (110)
T 2ekx_A 18 ISRSQSEQLLRQKGKEGAFMVRNS 41 (110)
T ss_dssp CCHHHHHHHHHHTCCTTEEEEEEC
T ss_pred CCHHHHHHHHhccCCCceEEEEec
Confidence 456677777776668899988753
No 10
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=4.54 E-value=2e+02 Score=27.38 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=8.5
Q ss_pred ccccccccccccc
Q psy6816 89 SYKVYFPQVWCFR 101 (273)
Q Consensus 89 ~~~~~~~~~~~~~ 101 (273)
--||+||+.|.+|
T Consensus 444 ~~kN~yp~~wR~~ 456 (456)
T 3m4x_A 444 TVKNFFPKGLRFH 456 (456)
T ss_dssp EEEECSCGGGCC-
T ss_pred EEecCCChhhccC
Confidence 3577888877654
Done!