Query psy6816
Match_columns 273
No_of_seqs 126 out of 402
Neff 3.8
Searched_HMMs 13730
Date Fri Aug 16 19:08:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6816.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6816hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gxqa_ a.4.6.1 (A:) PhoB {Esc 10.4 34 0.0025 23.9 0.6 27 239-265 35-62 (105)
2 d1ys7a1 a.4.6.1 (A:128-233) Tr 10.4 39 0.0028 23.6 0.9 28 238-265 36-64 (106)
3 d1opca_ a.4.6.1 (A:) OmpR {Esc 8.4 35 0.0025 23.4 -0.1 25 240-264 30-55 (99)
4 d2shpa3 d.93.1.1 (A:111-218) T 7.6 86 0.0062 21.3 1.8 24 222-245 6-29 (108)
5 d3b7sa3 d.92.1.13 (A:209-460) 7.3 98 0.0072 23.8 2.2 30 238-267 177-207 (252)
6 d1szba1 b.23.1.1 (A:3-123) Man 7.1 2.2E+02 0.016 18.9 3.9 18 144-161 21-38 (121)
7 d1d4ta_ d.93.1.1 (A:) The Xlp 6.0 80 0.0058 21.3 0.9 23 223-245 11-33 (104)
8 d1jyra_ d.93.1.1 (A:) Growth f 5.9 1E+02 0.0073 21.2 1.4 29 223-251 10-38 (96)
9 d1luia_ d.93.1.1 (A:) Itk/tsk 5.7 84 0.0061 21.8 0.9 23 223-245 13-35 (108)
10 d2zkmx2 b.7.1.1 (X:678-799) Ph 5.4 2.6E+02 0.019 19.4 3.6 43 131-177 46-93 (122)
No 1
>d1gxqa_ a.4.6.1 (A:) PhoB {Escherichia coli [TaxId: 562]}
Probab=10.41 E-value=34 Score=23.90 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=21.3
Q ss_pred cEehhHHHHhhcChHHHHH-HHHHHHHH
Q psy6816 239 DWWILYMLERNIDPVIYRD-IAAELAKK 265 (273)
Q Consensus 239 g~flL~~l~~N~g~~v~~e-iv~~L~~~ 265 (273)
-.-+|.++..|.|.++.+| |++++|..
T Consensus 35 E~~lL~~L~~~~g~vvsr~~L~~~vw~~ 62 (105)
T d1gxqa_ 35 EFKLLHFFMTHPERVYSREQLLNHVWGT 62 (105)
T ss_dssp HHHHHHHHHHSCSSEECHHHHHHHHTCS
T ss_pred HHHHHHHHHhCccccccHHHHhccccCC
Confidence 3568999999999988855 77888853
No 2
>d1ys7a1 a.4.6.1 (A:128-233) Transcriptional regulatory protein PrrA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.37 E-value=39 Score=23.60 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=21.1
Q ss_pred CcEehhHHHHhhcChHHHHH-HHHHHHHH
Q psy6816 238 GDWWILYMLERNIDPVIYRD-IAAELAKK 265 (273)
Q Consensus 238 dg~flL~~l~~N~g~~v~~e-iv~~L~~~ 265 (273)
-..-+|.++..|.|.++.+| |++++|..
T Consensus 36 ~E~~lL~~L~~~~g~~vsr~~L~~~vw~~ 64 (106)
T d1ys7a1 36 REFDLLAVLAEHKTAVLSRAQLLELVWGY 64 (106)
T ss_dssp HHHHHHHHHHHTTTCCBCHHHHHHHHHCC
T ss_pred HHhHHHHHHhhhhhhhhhHHHHHhhhcCC
Confidence 34568889999988887755 78888843
No 3
>d1opca_ a.4.6.1 (A:) OmpR {Escherichia coli [TaxId: 562]}
Probab=8.37 E-value=35 Score=23.42 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=18.9
Q ss_pred EehhHHHHhhcChHHHHH-HHHHHHH
Q psy6816 240 WWILYMLERNIDPVIYRD-IAAELAK 264 (273)
Q Consensus 240 ~flL~~l~~N~g~~v~~e-iv~~L~~ 264 (273)
.-+|.++..|.|.++.+| |++++|.
T Consensus 30 ~~lL~~L~~~~g~~vsr~~L~~~vwg 55 (99)
T d1opca_ 30 FAVLKALVSHPREPLSRDKLMNLARG 55 (99)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHCC
T ss_pred HHHHHHHHhccceeccHHHHHHHhcC
Confidence 347888888888888754 7778884
No 4
>d2shpa3 d.93.1.1 (A:111-218) Tyrosine phoshatase shp-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.62 E-value=86 Score=21.30 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=17.5
Q ss_pred CCChhhHHHHhhcCCCCcEehhHH
Q psy6816 222 LVPHEIADALCRKTSLGDWWILYM 245 (273)
Q Consensus 222 ~~~~~~l~~~v~~~~~dg~flL~~ 245 (273)
.+++++.+.+++.-+.||.||+|-
T Consensus 6 ~i~R~~Ae~lL~~~~~~G~FLVR~ 29 (108)
T d2shpa3 6 HLSGKEAEKLLTEKGKHGSFLVRE 29 (108)
T ss_dssp SCCHHHHHHHHHHTCCTTEEEEEE
T ss_pred CCCHHHHHHHHhhcCCCCeEEEEe
Confidence 345667777777666788888875
No 5
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.30 E-value=98 Score=23.81 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=25.6
Q ss_pred CcEehhHHHHhhcC-hHHHHHHHHHHHHHcc
Q psy6816 238 GDWWILYMLERNID-PVIYRDIAAELAKKIE 267 (273)
Q Consensus 238 dg~flL~~l~~N~g-~~v~~eiv~~L~~~~~ 267 (273)
-|..+|+||+.-+| +-.+++.+..+.+++.
T Consensus 177 Kga~vl~mL~~~iG~~~~f~~~lr~yl~~~~ 207 (252)
T d3b7sa3 177 KGFALLFYLEQLLGGPEIFLGFLKAYVEKFS 207 (252)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHhccHHHHHHHHHHHHHHhC
Confidence 47799999999998 5678999999988874
No 6
>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.07 E-value=2.2e+02 Score=18.94 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=14.3
Q ss_pred cCCeeeeeeeeeeccCCC
Q psy6816 144 VFPRVTKCTFHKYGASGS 161 (273)
Q Consensus 144 ~FPRvT~Cdf~~~~~~G~ 161 (273)
.+|.=+.|...+..+.|.
T Consensus 21 ~Yp~~~~C~W~I~~p~g~ 38 (121)
T d1szba1 21 EYANDQERRWTLTAPPGY 38 (121)
T ss_dssp CCCSSCEEEEEEECCTTE
T ss_pred CCCCCCeEEEEEEeCCCc
Confidence 568889999998766664
No 7
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.01 E-value=80 Score=21.33 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=15.6
Q ss_pred CChhhHHHHhhcCCCCcEehhHH
Q psy6816 223 VPHEIADALCRKTSLGDWWILYM 245 (273)
Q Consensus 223 ~~~~~l~~~v~~~~~dg~flL~~ 245 (273)
+++++.+.++++-+.||.||+|-
T Consensus 11 isR~eAe~lL~~~~~~G~FLVR~ 33 (104)
T d1d4ta_ 11 ISRETGEKLLLATGLDGSYLLRD 33 (104)
T ss_dssp CCHHHHHHHHHHHCCTTEEEEEE
T ss_pred CCHHHHHHHHhhCCCCCeEEEEe
Confidence 34566677666556778888874
No 8
>d1jyra_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.87 E-value=1e+02 Score=21.15 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=19.0
Q ss_pred CChhhHHHHhhcCCCCcEehhHHHHhhcC
Q psy6816 223 VPHEIADALCRKTSLGDWWILYMLERNID 251 (273)
Q Consensus 223 ~~~~~l~~~v~~~~~dg~flL~~l~~N~g 251 (273)
.++++.+.++..-+.||.|++|-=+.+-|
T Consensus 10 isR~~Ae~lL~~~~~~G~FLvR~S~~~~g 38 (96)
T d1jyra_ 10 IPRAKAEEMLSKQRHDGAFLIRESESAPG 38 (96)
T ss_dssp CCHHHHHHHHHTCCSTTBEEEEECSSSTT
T ss_pred CCHHHHHHHHhhCCCCCeEEEEecCCCCC
Confidence 45667777776666789888876433333
No 9
>d1luia_ d.93.1.1 (A:) Itk/tsk protein tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.74 E-value=84 Score=21.83 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=16.4
Q ss_pred CChhhHHHHhhcCCCCcEehhHH
Q psy6816 223 VPHEIADALCRKTSLGDWWILYM 245 (273)
Q Consensus 223 ~~~~~l~~~v~~~~~dg~flL~~ 245 (273)
+++++.+.+++.-+.||.||+|-
T Consensus 13 isR~eAe~lL~~~~~~G~FLVR~ 35 (108)
T d1luia_ 13 ISRDKAEKLLLDTGKEGAFMVRD 35 (108)
T ss_dssp CCHHHHHHHHHHHCCTTEEEEEE
T ss_pred CCHHHHHHHHHhcCCCCeEEEEe
Confidence 45667777776556789998873
No 10
>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.38 E-value=2.6e+02 Score=19.44 Aligned_cols=43 Identities=23% Similarity=0.488 Sum_probs=26.8
Q ss_pred hcCCCCCCCCCcccC-----CeeeeeeeeeeccCCCceeEeeEEeeeccchh
Q psy6816 131 YAFCPGWPDPMVYVF-----PRVTKCTFHKYGASGSIQTHDSLCILPLNIVN 177 (273)
Q Consensus 131 ~~~g~~W~~~~s~~F-----PRvT~Cdf~~~~~~G~iq~~t~qCVLpiNi~N 177 (273)
+++.|.|+|.. -.| |...+=.|.++.. + ...-+||++|++-+.
T Consensus 46 n~~nP~wne~~-~~~~~~~~~~l~~L~f~V~D~-d--~~~lG~~~ipl~~l~ 93 (122)
T d2zkmx2 46 NSINPVWKEEP-FVFEKILMPELASLRVAVMEE-G--NKFLGHRIIPINALN 93 (122)
T ss_dssp CCSSCBCCCCC-EEEEEESSGGGCEEEEEEEET-T--TEEEEEEEEEGGGBC
T ss_pred CeecceEcccE-eEEEecCCCcccEEEEEEECC-C--CCEEEEEEEEcccCc
Confidence 46779998631 233 3344445666632 3 466799999998654
Done!