RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6816
         (273 letters)



>gnl|CDD|216168 pfam00876, Innexin, Innexin.  This family includes the drosophila
           proteins Ogre and shaking-B, and the C. elegans proteins
           Unc-7 and Unc-9. Members of this family are integral
           membrane proteins which are involved in the formation of
           gap junctions. This family has been named the Innexins.
          Length = 341

 Score =  138 bits (349), Expect = 9e-39
 Identities = 46/133 (34%), Positives = 76/133 (57%), Gaps = 8/133 (6%)

Query: 137 WPDPMVYVFPRVTKCTFHKYGASGSIQTHDSLCILPLNIVNEKTYIFIWFWFVMLFVLVG 196
           W D  V  FPRVTKC F      GS+Q +   C+LP+NI NEK +IF+WFWFV L ++  
Sbjct: 209 WTDSGV--FPRVTKCDFEIRKLGGSVQNYTVQCVLPINIFNEKIFIFLWFWFVFLAIISV 266

Query: 197 LQVVYRLALIFCP----KVRPLVMRTKNRLVPHEIADALCRKTSLGDWWILYMLERNIDP 252
           L ++Y +A +  P      R  ++R  ++L P  +   +     +  W++L ML +N+  
Sbjct: 267 LSLLYWIATLLSPSRRVSFRKKLLRASSKLNP--LDKFVRDYLRIDGWFLLRMLAKNLGD 324

Query: 253 VIYRDIAAELAKK 265
           ++Y+++  EL ++
Sbjct: 325 LVYKELIEELWQR 337



 Score = 67.3 bits (165), Expect = 8e-13
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 9   LSNYLFSLLQSHSN-----YVTKYFACEFLCFLNIIVQMYAMNKFFDGEFINYGMRVLTF 63
           L+ YL   L SH+          YF C+ L  +N+I Q++ +N+F  G+F  YG+ VL  
Sbjct: 143 LARYLDDNLHSHNRYYGNYLAYLYFFCKLLNLINVIGQIFLLNRFLGGDFHFYGIDVLAD 202

Query: 64  SEQAQEDRVDPM 75
                ED  D  
Sbjct: 203 L-LNGEDWTDSG 213


>gnl|CDD|165115 PHA02748, PHA02748, viral inexin-like protein; Provisional.
          Length = 360

 Score =  124 bits (313), Expect = 2e-33
 Identities = 48/129 (37%), Positives = 83/129 (64%)

Query: 139 DPMVYVFPRVTKCTFHKYGASGSIQTHDSLCILPLNIVNEKTYIFIWFWFVMLFVLVGLQ 198
           +PM  +FP VTKCT+ KYG SG+ +  + +C+L  N +NEK Y+F+WFWF +L V+    
Sbjct: 225 NPMERLFPTVTKCTYEKYGPSGTPENIEGICLLTQNSLNEKIYVFLWFWFHILAVISAFV 284

Query: 199 VVYRLALIFCPKVRPLVMRTKNRLVPHEIADALCRKTSLGDWWILYMLERNIDPVIYRDI 258
           V+YR+A +    +R  + R+ + L   +    +  K  +GDW++L+ML +NI+P+ Y+++
Sbjct: 285 VIYRIATLLSSSLRLYMFRSSSSLNRADDIAVVYNKLQIGDWFLLHMLRKNINPLAYKEL 344

Query: 259 AAELAKKIE 267
            + LA+  +
Sbjct: 345 ISRLAQHFD 353



 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 27/67 (40%), Positives = 40/67 (59%)

Query: 9   LSNYLFSLLQSHSNYVTKYFACEFLCFLNIIVQMYAMNKFFDGEFINYGMRVLTFSEQAQ 68
           L +Y F  L SH+ Y  KYF CE L  +NI+ Q+  MN F   +F  YG+ V+ F+++A 
Sbjct: 161 LVDYFFMNLHSHNAYAYKYFTCELLNLINIVGQIQFMNIFIGEDFQLYGIYVIFFNQEAG 220

Query: 69  EDRVDPM 75
           +   +PM
Sbjct: 221 KSMTNPM 227


>gnl|CDD|220885 pfam10838, DUF2677, Protein of unknown function (DUF2677).
          Members in this family of proteins are annotated as
          UL121 however currently no function is known.
          Length = 159

 Score = 30.6 bits (69), Expect = 0.53
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 53 FINYGMRVLTFSEQAQEDRVDPMSSSMRPHGLCISQS 89
          FIN   RV  F    QE+  DP    +R    C S+ 
Sbjct: 40 FINDSSRVWAFDFDDQEEGDDPYRVEVRHSTSCTSEY 76


>gnl|CDD|131620 TIGR02569, TIGR02569_actnb, TIGR02569 family protein.  This protein
           family is found, so far, only in Actinobacteria,
           including as least five species of Mycobacterium, three
           of Corynebacterium, and Nocardia farcinica, always in a
           single copy per genome. The function is unknown
           [Hypothetical proteins, Conserved].
          Length = 272

 Score = 29.2 bits (65), Expect = 2.3
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 50  DGEFINYGMRVLTFSEQAQEDRVDP-MSSSMRPH 82
           DG ++  G R  TF     E RVD  + +++R H
Sbjct: 70  DGRYVVAGWRADTFVAGTPEPRVDETVVAALRLH 103


>gnl|CDD|222318 pfam13685, Fe-ADH_2, Iron-containing alcohol dehydrogenase. 
          Length = 247

 Score = 28.3 bits (64), Expect = 3.9
 Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 227 IADALCRKTSLGDWWILYMLERNIDPVIYRDIAAELAKKIEAPKAHI 273
             D + + T+L DW + + +   I         A + + ++   A  
Sbjct: 155 FGDLVGKITALADWKLAHEVAEPIAK----LSVALVVENLDKLLADP 197


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.331    0.143    0.471 

Gapped
Lambda     K      H
   0.267   0.0754    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,876,461
Number of extensions: 1297522
Number of successful extensions: 1857
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1852
Number of HSP's successfully gapped: 29
Length of query: 273
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 178
Effective length of database: 6,723,972
Effective search space: 1196867016
Effective search space used: 1196867016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.1 bits)