RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6816
(273 letters)
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold,
zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus
cereus}
Length = 242
Score = 30.9 bits (70), Expect = 0.38
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 240 WWILYMLERNIDPVIYRDIAAELAKKIEAPKAH 272
+ YM+ P DI+ L+ K+EA +A+
Sbjct: 143 SFYNYMINGFHKPNFCIDISEYLSIKVEALEAY 175
>1nc7_A Hypothetical protein TM1070; structural genomics, molecular
propeller, PSI, protein structure initiative; 1.55A
{Thermotoga maritima} SCOP: b.123.1.1
Length = 138
Score = 28.4 bits (63), Expect = 1.2
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 157 GASGSIQTHDSLCILPLNIVNEKTYIFIWFWF 188
G G + +H+SLCI +N +E I I F F
Sbjct: 39 GKRGYLVSHESLCI--MNTGDETAKIRITFLF 68
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; 2.00A {Thermus thermophilus} SCOP:
c.134.1.1
Length = 227
Score = 28.5 bits (64), Expect = 1.7
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 240 WWILYMLERNIDPVIYRDIAAELAKKIEAPKAH 272
Y P I+A + + A A+
Sbjct: 141 RLFFYPGNHPFAPSFLVKISAFIDQWEAAVLAY 173
>2iia_A Sensory rhodopsin transducer protein; signaling protein; 1.80A
{Anabaena SP} PDB: 2ii9_A 2ii7_A 2ii8_A
Length = 131
Score = 26.9 bits (59), Expect = 4.2
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 155 KYGASGSIQTHDSLCILPLNIVNEKTYIFIWFWF 188
G +H+++CI LN +E ++ I ++
Sbjct: 27 GNGPEPQFISHETVCI--LNAGDEDAHVEITIYY 58
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 5.2
Identities = 44/265 (16%), Positives = 63/265 (23%), Gaps = 125/265 (47%)
Query: 35 FLNIIVQMYAMNKFFDGEFINYGMR------VLTFSEQAQEDRVD-------PMSSSMRP 81
F + + + F FI G+R + ED ++ PM S +
Sbjct: 292 FFVSVRKAITV--LF---FI--GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS-IS- 342
Query: 82 HGLCISQSYKV------YFP---QVWCFRINSNPRFLVYTS------------------- 113
L Q + P QV +N + LV +
Sbjct: 343 -NLTQEQVQDYVNKTNSHLPAGKQVEISLVNG-AKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 114 ------TKYSQRKDLHFHLVLVCYAFCPGWPDPMVYVF-PRVTKCTFH-KY--GASGSIQ 163
+S+RK L F F P V P FH AS I
Sbjct: 401 GLDQSRIPFSERK-LKFSNR-----FLP--------VASP------FHSHLLVPASDLIN 440
Query: 164 THDSLCILPLNIVNEKTYIFIWFWFVMLFVLVGLQVVYRLALIFCPKVRPLV-------- 215
LV V + I P V
Sbjct: 441 KD----------------------------LVKNNVSFNAKDIQIP-----VYDTFDGSD 467
Query: 216 MRTKNRLVPHEIADALCRKTSLGDW 240
+R + + I D + R W
Sbjct: 468 LRVLSGSISERIVDCIIRLPV--KW 490
Score = 27.7 bits (61), Expect = 5.5
Identities = 32/231 (13%), Positives = 56/231 (24%), Gaps = 81/231 (35%)
Query: 76 SSSMRP----HGLCISQSYKV----YFP--QVW-CFR---------------INSNP--- 106
+ S RP HG + V +F Q+ F +
Sbjct: 3 AYSTRPLTLSHG-SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 107 -RFLVYTSTKYSQRKDLHFHLVL--VCYAF----------------CPGWPDPMVYVFPR 147
+FL Y S+ K F VL F D +
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 148 VTKCTFHKYGASGS--IQTHDSLCILPLNIVNEKTYIFIWFWFVMLFVLVG--------- 196
+ K + + +S L V E L + G
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSA--L-FRAVGEGN--------AQLVAIFGGQGNTDDYF 170
Query: 197 --LQVVYRLALIFCPKVRPLVMRTKNRLV-----PHEIADALCRKTSLGDW 240
L+ +Y+ + V L+ + L + + ++ +W
Sbjct: 171 EELRDLYQ---TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein
complex, tuberculos structural genomics consortium,
protein binding; HET: MLZ FLC; 2.15A {Mycobacterium
tuberculosis}
Length = 96
Score = 25.8 bits (56), Expect = 6.8
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 57 GMRVLTFSEQAQED 70
+R + F A ED
Sbjct: 11 KVRSVNFDPDAWED 24
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 7.1
Identities = 38/264 (14%), Positives = 66/264 (25%), Gaps = 102/264 (38%)
Query: 12 YLFSLLQSHSNYVTKYFACEFLCFLNIIVQMYAMNKFFDGEFINYGMRVLTFSEQAQEDR 71
LF L S + + F + INY + ++
Sbjct: 66 RLFWTLLSKQEEMVQKF-------------------VEEVLRINYKF----LMSPIKTEQ 102
Query: 72 VDPMSSSMRPHGLCISQSYKVYFPQVWCFRINSNPRFLVYTSTKYS-QRKDLHFHLVLVC 130
P SM +++ Y +++ N N F KY+ R + L
Sbjct: 103 RQP---SM------MTRMYIEQRDRLY----NDNQVF-----AKYNVSRLQPYLKLRQAL 144
Query: 131 YAFCPGWPDPMVYVFPRVTKCTFHKYGASGS---------IQTHDSLCILPLNIVNEKTY 181
P V + G GS ++ C + I
Sbjct: 145 LELRPA---KNVLI-----------DGVLGSGKTWVALDVCLSYKVQCKMDFKI------ 184
Query: 182 IFIWFWFVMLFVLVG--------LQVVYRLALIFCPKVRPLVMRTKN-RLVPHEIADALC 232
FW + + L+++ +L P + N +L H I L
Sbjct: 185 ----FW-----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 233 R-------KTSL------GDWWIL 243
R + L +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAW 259
>2yzj_A 167AA long hypothetical dutpase; all beta proteins, hypothetical
protein, NPPSFA; HET: DUD; 1.66A {Sulfolobus tokodaii}
PDB: 2zdc_A
Length = 169
Score = 26.2 bits (58), Expect = 8.2
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 237 LGDWWILYMLERNIDP 252
L I +L + I
Sbjct: 13 LSHQSIKNLLGKVILN 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.143 0.471
Gapped
Lambda K H
0.267 0.0481 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,187,792
Number of extensions: 236223
Number of successful extensions: 546
Number of sequences better than 10.0: 1
Number of HSP's gapped: 544
Number of HSP's successfully gapped: 12
Length of query: 273
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,133,061
Effective search space: 748084041
Effective search space used: 748084041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.9 bits)