RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6816
         (273 letters)



>d1nc7a_ b.123.1.1 (A:) Hypothetical protein TM1070 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 116

 Score = 27.4 bits (61), Expect = 0.88
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 157 GASGSIQTHDSLCILPLNIVNEKTYIFIWFWF 188
           G  G + +H+SLCI  +N  +E   I I F F
Sbjct: 18  GKRGYLVSHESLCI--MNTGDETAKIRITFLF 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.143    0.471 

Gapped
Lambda     K      H
   0.267   0.0400    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,064,413
Number of extensions: 48047
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 7
Length of query: 273
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,254,276
Effective search space: 237058164
Effective search space used: 237058164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.7 bits)