BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6818
(162 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|307207165|gb|EFN84955.1| Poly [ADP-ribose] polymerase [Harpegnathos saltator]
Length = 983
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 95/163 (58%), Gaps = 25/163 (15%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG----------- 49
SP DGK PKW+H +CF+ K RPK+ DI +R +DQE++K ++
Sbjct: 39 SPVHDGKIPKWYHSKCFFLKQRPKSTADIACFDQIRDKDQEVLKKRLEEALKAPPVSGKG 98
Query: 50 --------------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWY 95
+EYAKS+RSTC+GCE KI K E+R+SK +Y++D+ K GGI WY
Sbjct: 99 RKRANATKSGSGDFKVEYAKSSRSTCKGCEEKIIKEEVRISKKDYETDEAKKYGGIDRWY 158
Query: 96 HLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLS 138
H+ CF +R+DL + G ++PG L K+DQ+ V+A L ++
Sbjct: 159 HVECFAKLRVDLGYYGEGSELPGIKDLSKEDQETVKAALNKIN 201
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EYAKSNRS+C+GC+ I K +R++ + G IP+WYH CF +
Sbjct: 9 VEYAKSNRSSCQGCKTLIGKSSLRLAAVVQSPVHD---GKIPKWYHSKCF----FLKQRP 61
Query: 111 ASGKQIPGFGSLEKKDQKIVEATL 134
S I F + KDQ++++ L
Sbjct: 62 KSTADIACFDQIRDKDQEVLKKRL 85
>gi|241644606|ref|XP_002409668.1| poly [ADP-ribose] polymerase, putative [Ixodes scapularis]
gi|215501402|gb|EEC10896.1| poly [ADP-ribose] polymerase, putative [Ixodes scapularis]
Length = 963
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 92/149 (61%), Gaps = 14/149 (9%)
Query: 3 FFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGNI----------- 51
FDGK P W+H CF+ K RPK++ DI +LR++DQ+ I+ KI +
Sbjct: 1 MFDGKVPHWYHFMCFFSKQRPKSVGDIDKYGTLRYEDQKRIQEKIESKMAAGTTADDLRD 60
Query: 52 ---EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
EYAKSN+STC+GC KIAKGE+R+SK++YD KM G +P+WYH+ CF R DL+
Sbjct: 61 FSTEYAKSNKSTCKGCSEKIAKGEVRISKLDYDGAFSKMRGPVPQWYHVDCFVKKRDDLD 120
Query: 109 FSASGKQIPGFGSLEKKDQKIVEATLPSL 137
++ IPGF SL DQ++++ + L
Sbjct: 121 YTLGADSIPGFMSLGVDDQRMLKEKIKKL 149
>gi|195107726|ref|XP_001998459.1| GI23619 [Drosophila mojavensis]
gi|193915053|gb|EDW13920.1| GI23619 [Drosophila mojavensis]
Length = 992
Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 96/160 (60%), Gaps = 23/160 (14%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG----------- 49
S F DGKTP WFH++CF+KK +P ++ DI N +LR DQ IK I
Sbjct: 39 SAFHDGKTPNWFHKDCFFKKQKPASVGDIKNFENLRFADQTEIKEMIGSGPVVVASKSGK 98
Query: 50 ------------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHL 97
+IEY+KS+R+ CRGCE KI K EIRVSK YD++ G GG W+HL
Sbjct: 99 RSKAEQAALKDFSIEYSKSSRAGCRGCELKINKDEIRVSKTVYDTEVGMKYGGQKVWHHL 158
Query: 98 SCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
CF +R D+ + SG+ +PG+ SL+K+D+++V TLP++
Sbjct: 159 ECFAQMRADIGWFDSGENLPGYKSLKKEDKELVLKTLPAI 198
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EY+K+ R++C+GC+ I K +R++ M + G P W+H CF +
Sbjct: 9 VEYSKTGRASCKGCKTPIPKDVVRIAVMVQSAFHD---GKTPNWFHKDCF----FKKQKP 61
Query: 111 ASGKQIPGFGSLEKKDQKIVEATLPS 136
AS I F +L DQ ++ + S
Sbjct: 62 ASVGDIKNFENLRFADQTEIKEMIGS 87
>gi|427780093|gb|JAA55498.1| Putative poly adp-ribose polymerase 1 [Rhipicephalus pulchellus]
Length = 987
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 86/139 (61%), Gaps = 14/139 (10%)
Query: 3 FFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGNI----------- 51
FDGKTP W+H CF+ K RPK++ DI +LR++DQ+ I+ KI +
Sbjct: 1 MFDGKTPNWYHFMCFFAKQRPKSVGDIDKFGTLRYEDQKRIQEKIESKLATGTTEEDLKD 60
Query: 52 ---EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
EYAKS +STC+GC KIAKGE+R+SK +YDS KM G IP W+H+ CF R DL+
Sbjct: 61 FATEYAKSGKSTCKGCNEKIAKGEVRISKNDYDSGYAKMRGAIPMWFHVDCFVQKRDDLD 120
Query: 109 FSASGKQIPGFGSLEKKDQ 127
++ + +PGF +L DQ
Sbjct: 121 YTLGAESLPGFMTLGVDDQ 139
>gi|350404320|ref|XP_003487068.1| PREDICTED: poly [ADP-ribose] polymerase-like [Bombus impatiens]
Length = 990
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 92/166 (55%), Gaps = 29/166 (17%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
SP DGK PKW+H CF+ K RPK DI N ++R +DQ+ ++ +I
Sbjct: 39 SPVHDGKVPKWYHPPCFFMKQRPKTTADIANFDNIRWEDQKELQRRIEEASTLPLPASRK 98
Query: 51 -------------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGI 91
++YAKSN+STC+ CE KI +GEIRVSK +++S+ G+ GGI
Sbjct: 99 GRKRSGGGTAATGPLHDFLVQYAKSNKSTCKACEEKIVQGEIRVSKKDFESEHGRRYGGI 158
Query: 92 PEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
W+HL CF VR L+F SG +PG L K DQK +++ LP +
Sbjct: 159 DRWHHLECFAKVRESLQFYESGDSLPGKDELSKDDQKKLKSVLPRI 204
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
++EYAKS+R++C+ C+ I K +R++ + G +P+WYH CF
Sbjct: 8 SVEYAKSSRASCQNCKKNIEKDSLRLAVIVQSPVHD---GKVPKWYHPPCF 55
>gi|340716645|ref|XP_003396806.1| PREDICTED: LOW QUALITY PROTEIN: poly [ADP-ribose] polymerase-like
[Bombus terrestris]
Length = 990
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 92/166 (55%), Gaps = 29/166 (17%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
SP DGK PKW+H CF+ K RPK DI N ++R +DQ+ ++ +I
Sbjct: 39 SPVHDGKVPKWYHPPCFFMKQRPKTTADIANFDNIRWEDQKELQRRIEEASTLPLPASRK 98
Query: 51 -------------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGI 91
++YAKSN+STC+ CE KI +GEIRVSK +++S+ G+ GGI
Sbjct: 99 GRKRSGGGTAAAGPLHDFLVQYAKSNKSTCKACEEKIVQGEIRVSKKDFESEHGRRYGGI 158
Query: 92 PEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
W+HL CF VR L+F SG +PG L K DQK +++ LP +
Sbjct: 159 DRWHHLECFAKVRESLQFYESGDALPGKDELSKDDQKKLKSVLPRI 204
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
++EYAKS+R++C+ C+ I K +R++ + G +P+WYH CF
Sbjct: 8 SVEYAKSSRASCQNCKKNIEKDSLRLAVIVQSPVHD---GKVPKWYHPPCF 55
>gi|307182369|gb|EFN69632.1| Poly [ADP-ribose] polymerase [Camponotus floridanus]
Length = 983
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 94/167 (56%), Gaps = 27/167 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG----------- 49
SP DG P+W+H ECF++K RPK+ DI +R +DQE I+ KI
Sbjct: 39 SPVHDGTIPRWYHFECFFEKQRPKSTADIACFDEIRLEDQEEIQKKIEEFVNAPPVSGKG 98
Query: 50 ----------------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPE 93
+EYAKSN+STC+GC+ KI KGE R+SK +Y++ + + GG+
Sbjct: 99 RKRTKGGGASGSAGDFRVEYAKSNKSTCKGCDEKIIKGETRISKKDYETAEARRFGGLDR 158
Query: 94 WYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDG 140
W+H+ CF +R DL + SG ++PG L K+D+ ++A LP ++ G
Sbjct: 159 WHHVECFAKLRADLGYYGSGDELPGVKELSKEDRNSLKAALPKMTQG 205
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS+RS C+ C+ I+K +R++ + G IP WYH CF + +
Sbjct: 10 EYAKSDRSKCQQCKQPISKQSLRIAAIVQSPVHD---GTIPRWYHFECF----FEKQRPK 62
Query: 112 SGKQIPGFGSLEKKDQKIVEATL 134
S I F + +DQ+ ++ +
Sbjct: 63 STADIACFDEIRLEDQEEIQKKI 85
>gi|383864408|ref|XP_003707671.1| PREDICTED: poly [ADP-ribose] polymerase-like [Megachile rotundata]
Length = 991
Score = 131 bits (330), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 97/169 (57%), Gaps = 29/169 (17%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI------------- 47
SP DG PKW+H +CF+ K RPK D N ++R +DQ++I+ KI
Sbjct: 39 SPVHDGLIPKWYHPDCFFLKQRPKDTADFANFDNIRWEDQKIIEKKIEEASTIPLPVSGK 98
Query: 48 -----------LGN-----IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGI 91
LG ++YAKSN+STC+ CE +I +GEIRVSK +++S+QG+ GGI
Sbjct: 99 GKKRGSAAAKNLGPLKDFLVQYAKSNKSTCKACEERIVQGEIRVSKKDFESEQGRRYGGI 158
Query: 92 PEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDG 140
WYHL CF VR LEF +G +PG L K D+K VEA LP ++ G
Sbjct: 159 DRWYHLECFAKVRESLEFFENGIILPGIKDLSKDDKKKVEAALPKINAG 207
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF 109
++EYAKS R++C+ C++ I KG +R++ + G IP+WYH CF +
Sbjct: 8 SVEYAKSARASCQNCKSSIEKGVLRLAVIVQSPVHD---GLIPKWYHPDCF----FLKQR 60
Query: 110 SASGKQIPGFGSLEKKDQKIVEATLPSLS 138
F ++ +DQKI+E + S
Sbjct: 61 PKDTADFANFDNIRWEDQKIIEKKIEEAS 89
>gi|270004381|gb|EFA00829.1| hypothetical protein TcasGA2_TC003717 [Tribolium castaneum]
Length = 956
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 96/168 (57%), Gaps = 31/168 (18%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI--LGNI------- 51
SPF DG P W H CF+ K RPK+ DI++ +LR +DQE+I+ K+ +G+I
Sbjct: 37 SPFHDGMMPNWHHLHCFFNKQRPKSEDDIYHFETLRLEDQEIIREKLSNMGSIIVPEKKG 96
Query: 52 ----------------------EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIG 89
EYAKS R+ CRGCE KI K EIR+SK ++++D GK G
Sbjct: 97 KGKKRDATAIAQKNAALKDFKIEYAKSGRAACRGCEQKILKDEIRISKKDFETDIGKKYG 156
Query: 90 GIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
G W+H++CF +R +L + S Q+PGF SL+K+DQ + LP++
Sbjct: 157 GQDMWHHVTCFAQLRAELGYFESADQLPGFKSLKKEDQAETKKALPAI 204
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS RS CRGC++ I +G +R++ M G +P W+HL CF + +
Sbjct: 8 EYAKSGRSNCRGCKSPIGQGTVRLAVMVQSPFHD---GMMPNWHHLHCF----FNKQRPK 60
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSL 137
S I F +L +DQ+I+ L ++
Sbjct: 61 SEDDIYHFETLRLEDQEIIREKLSNM 86
>gi|380019416|ref|XP_003693603.1| PREDICTED: poly [ADP-ribose] polymerase-like [Apis florea]
Length = 991
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 93/166 (56%), Gaps = 29/166 (17%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGNI--------- 51
SP DGK P W+H CF+ K RPK DI N ++R +DQ+ ++ KI +I
Sbjct: 39 SPVHDGKIPNWYHPPCFFTKQRPKTTADIANFDNIRWEDQKELQKKIEESINLPLPASGR 98
Query: 52 --------------------EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGI 91
+YAKSN+STC+ CE +I +GEIR+SK +++S+Q + GGI
Sbjct: 99 GKKRGSTSAKNIGPLRDFVVQYAKSNKSTCKACEERIVQGEIRISKKDFESEQARRYGGI 158
Query: 92 PEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
+W+HL CF VR L+F SG +PG L K+DQK ++ LP +
Sbjct: 159 DKWHHLDCFIKVRESLQFYESGDALPGKEDLSKEDQKKLKDALPKI 204
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF 109
++EYAKS+RS+C+ C+ I K +R++ + G IP WYH CF +
Sbjct: 8 SVEYAKSSRSSCKNCKNSIQKDSLRLAVIVQSPVHD---GKIPNWYHPPCF----FTKQR 60
Query: 110 SASGKQIPGFGSLEKKDQK 128
+ I F ++ +DQK
Sbjct: 61 PKTTADIANFDNIRWEDQK 79
>gi|237681143|ref|NP_001153714.1| poly-(ADP-ribose) polymerase [Tribolium castaneum]
Length = 991
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 96/168 (57%), Gaps = 31/168 (18%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI--LGNI------- 51
SPF DG P W H CF+ K RPK+ DI++ +LR +DQE+I+ K+ +G+I
Sbjct: 37 SPFHDGMMPNWHHLHCFFNKQRPKSEDDIYHFETLRLEDQEIIREKLSNMGSIIVPEKKG 96
Query: 52 ----------------------EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIG 89
EYAKS R+ CRGCE KI K EIR+SK ++++D GK G
Sbjct: 97 KGKKRDATAIAQKNAALKDFKIEYAKSGRAACRGCEQKILKDEIRISKKDFETDIGKKYG 156
Query: 90 GIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
G W+H++CF +R +L + S Q+PGF SL+K+DQ + LP++
Sbjct: 157 GQDMWHHVTCFAQLRAELGYFESADQLPGFKSLKKEDQAETKKALPAI 204
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS S CRGC++ I +G +R++ M M +P W+HL CF + +
Sbjct: 8 EYAKSGSSNCRGCKSPIGQGTVRLAVMVQSPFHDGM---MPNWHHLHCF----FNKQRPK 60
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSL 137
S I F +L +DQ+I+ L ++
Sbjct: 61 SEDDIYHFETLRLEDQEIIREKLSNM 86
>gi|328790898|ref|XP_624477.3| PREDICTED: poly [ADP-ribose] polymerase [Apis mellifera]
Length = 991
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 92/166 (55%), Gaps = 29/166 (17%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGNI--------- 51
SP DGK P W+H CF+ K RPK DI N ++R +DQ+ ++ KI +I
Sbjct: 39 SPVHDGKIPNWYHPPCFFTKQRPKTTADIANFDNIRWEDQKELQKKIEESINLPLPASGR 98
Query: 52 --------------------EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGI 91
+YAKSN+STC+ CE +I +GEIR+SK +++S+Q + GGI
Sbjct: 99 GKKRGSTSAKNIGPLRDFVVQYAKSNKSTCKACEERIVQGEIRISKKDFESEQARRYGGI 158
Query: 92 PEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
W+HL CF VR L+F SG +PG L K+DQK ++ LP +
Sbjct: 159 DRWHHLDCFIKVRESLQFYESGDTLPGKEELSKEDQKKLKDALPKI 204
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF 109
++EYAKS+RS+C+ C+ I K +R++ + G IP WYH CF +
Sbjct: 8 SVEYAKSSRSSCKNCKNSIQKDSLRLAVIVQSPVHD---GKIPNWYHPPCF----FTKQR 60
Query: 110 SASGKQIPGFGSLEKKDQK 128
+ I F ++ +DQK
Sbjct: 61 PKTTADIANFDNIRWEDQK 79
>gi|322789313|gb|EFZ14625.1| hypothetical protein SINV_00499 [Solenopsis invicta]
Length = 979
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 98/162 (60%), Gaps = 22/162 (13%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
SP DGK P+W+H +CF+ K RP + +I + +R++DQ+ I+ K+ +
Sbjct: 39 SPVHDGKIPRWYHFKCFFTKQRPSSTDEIGHFDEIRNEDQDKIRKKLEESRNAPPAKGKK 98
Query: 51 ------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLS 98
+EYAKS+RSTC GC+ KI KGE R+SK +Y++++ + GG+ W+H+
Sbjct: 99 RTKGGGGSGDFRVEYAKSSRSTCIGCQEKIIKGETRISKKDYETEEARRYGGLDRWHHVE 158
Query: 99 CFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDG 140
CF +R D+ + SG ++PG L K+D++ ++A+LP ++ G
Sbjct: 159 CFAKLRADVGYYGSGDELPGAAQLSKEDRQSLKASLPKMAQG 200
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS+RS C+ C+ +I K +R++ + G IP WYH CF + +
Sbjct: 10 EYAKSDRSKCQLCKQQINKLSLRLAAVVQSPVHD---GKIPRWYHFKCF----FTKQRPS 62
Query: 112 SGKQIPGFGSLEKKDQKIVEATL 134
S +I F + +DQ + L
Sbjct: 63 STDEIGHFDEIRNEDQDKIRKKL 85
>gi|1709741|sp|Q11208.1|PARP_SARPE RecName: Full=Poly [ADP-ribose] polymerase; Short=PARP; AltName:
Full=NAD(+) ADP-ribosyltransferase; Short=ADPRT;
AltName: Full=Poly[ADP-ribose] synthase
gi|538248|dbj|BAA03943.1| poly(ADP-ribose) polymerase [Sarcophaga peregrina]
Length = 996
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/170 (39%), Positives = 94/170 (55%), Gaps = 28/170 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG----------- 49
S F DGK P WFHE+CF++K RP + DI N ++R +DQE IK I
Sbjct: 39 SAFHDGKQPNWFHEQCFFQKQRPTSAGDIENFENIRFEDQERIKKAIDNCTTVISAGGSK 98
Query: 50 ----------------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPE 93
IEYAKS R++CRGCE KI K +IR+ K +D++ G GG P
Sbjct: 99 KGAKRSKGENNAIKDFGIEYAKSGRASCRGCEQKILKDQIRIRKTVFDTEVGMKYGGQPL 158
Query: 94 WYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSD-GVS 142
W+H+ CF +R +L + +G+ +PGF +L+ D+ V+ LP + D GVS
Sbjct: 159 WHHVECFAQLRGELGWLDTGENLPGFQTLKSDDKADVKKALPVIKDEGVS 208
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EY+KS+R++C+GC+ KI G +R++ M + G P W+H CF +
Sbjct: 9 VEYSKSSRASCKGCKNKIEAGILRIAAMVQSAFHD---GKQPNWFHEQCF----FQKQRP 61
Query: 111 ASGKQIPGFGSLEKKDQKIVEATLPSLSDGVS 142
S I F ++ +DQ+ ++ + + + +S
Sbjct: 62 TSAGDIENFENIRFEDQERIKKAIDNCTTVIS 93
>gi|242020640|ref|XP_002430760.1| polyA polymerase, putative [Pediculus humanus corporis]
gi|212515957|gb|EEB18022.1| polyA polymerase, putative [Pediculus humanus corporis]
Length = 992
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 96/164 (58%), Gaps = 21/164 (12%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI------------- 47
SPFFDGK P W+H CF+KK RPK I + S+R DQE IK+KI
Sbjct: 40 SPFFDGKQPNWYHFSCFFKKFRPKDSSSIAHFESIRWDDQEAIKNKIGKTTKSKKRNKPS 99
Query: 48 ------LGN--IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC 99
LG+ +EYAKS R+ C+ CE I K EIR+SK +Y+ + G + W+H+ C
Sbjct: 100 PSNIPDLGDYKVEYAKSKRAKCKVCEETINKDEIRISKKDYEGEIALKYGPVDRWHHVDC 159
Query: 100 FNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSK 143
F R +LEF +SG+ +PGF +L ++DQ +++ +P L++ SK
Sbjct: 160 FVKAREELEFFSSGEVLPGFKTLTEEDQNLLKTKIPELNNHSSK 203
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
EYAKS R++C+GC+ IAK +R++ M G P WYH SCF
Sbjct: 11 EYAKSGRASCKGCKENIAKESLRLAVM---VQSPFFDGKQPNWYHFSCF 56
>gi|193690639|ref|XP_001947212.1| PREDICTED: poly [ADP-ribose] polymerase-like [Acyrthosiphon pisum]
Length = 1008
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 93/162 (57%), Gaps = 24/162 (14%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI---LG-------- 49
SP FDGK P W+H CF+ K RPK + DI + S+R +DQ+ IK+K+ +G
Sbjct: 40 SPMFDGKQPNWYHFNCFFAKQRPKTVADIGHFDSIRWEDQQKIKTKLESLIGTANPVSTK 99
Query: 50 -------------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
N+EYAKS R+ C GC+ KI K +IR+ KM+YDSD+ + GGI W+H
Sbjct: 100 KKSNGKKMEDTNFNVEYAKSGRAVCCGCQDKIVKEDIRIGKMDYDSDEARRFGGINRWHH 159
Query: 97 LSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLS 138
L CF +R DL F + G+ +L++ D+ ++ LP ++
Sbjct: 160 LECFIKLRQDLGFLDLASSLTGYDNLKEVDRTNLKNLLPKMT 201
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLDLEFS 110
EYAKS RS C+GC+ I K +R++ M Q M G P WYH +CF A +
Sbjct: 11 EYAKSGRSKCKGCKEGIEKDHLRLAVM----IQSPMFDGKQPNWYHFNCFFAKQR----P 62
Query: 111 ASGKQIPGFGSLEKKDQKIVEATLPSL 137
+ I F S+ +DQ+ ++ L SL
Sbjct: 63 KTVADIGHFDSIRWEDQQKIKTKLESL 89
>gi|161076197|ref|NP_001104452.1| Poly-(ADP-ribose) polymerase, isoform B [Drosophila melanogaster]
gi|548585|sp|P35875.1|PARP_DROME RecName: Full=Poly [ADP-ribose] polymerase; Short=PARP; AltName:
Full=NAD(+) ADP-ribosyltransferase; Short=ADPRT;
AltName: Full=Poly[ADP-ribose] synthase
gi|303546|dbj|BAA02964.1| poly(ADP-ribose) polymerase [Drosophila melanogaster]
gi|3044062|gb|AAC24518.1| poly(ADP-ribose) polymerase [Drosophila melanogaster]
gi|51092107|gb|AAT94467.1| RE04933p [Drosophila melanogaster]
gi|158529679|gb|EDP28045.1| Poly-(ADP-ribose) polymerase, isoform B [Drosophila melanogaster]
gi|220951806|gb|ACL88446.1| Parp-PA [synthetic construct]
Length = 994
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 89/161 (55%), Gaps = 24/161 (14%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQ----------EMIKSKILGN 50
S F D K P WFH+ CF+K RP ++ DI N+ +LR DQ + + S LG
Sbjct: 39 SAFHDAKVPNWFHKTCFFKNQRPSSVGDIQNIGNLRFADQKELTDLVENIQEVISAQLGK 98
Query: 51 --------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
IEYAKS+RSTCRGCE KI K +R+ K YD++ G GG P W+H
Sbjct: 99 KRSKAFNLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHH 158
Query: 97 LSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
L CF +R +L + ASG+ +PGF SL DQ V+ +P +
Sbjct: 159 LECFAQLRSELGWFASGEDMPGFQSLADDDQAKVKNAIPPI 199
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYA++ R+TC+GC++ I+K +R++ M + +P W+H +CF + +
Sbjct: 10 EYARTGRATCKGCKSTISKDTLRIAVMVQSAFHD---AKVPNWFHKTCF----FKNQRPS 62
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGVS 142
S I G+L DQK + + ++ + +S
Sbjct: 63 SVGDIQNIGNLRFADQKELTDLVENIQEVIS 93
>gi|161076201|ref|NP_001015396.2| Poly-(ADP-ribose) polymerase, isoform C [Drosophila melanogaster]
gi|158529681|gb|EAA46046.2| Poly-(ADP-ribose) polymerase, isoform C [Drosophila melanogaster]
Length = 804
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 89/161 (55%), Gaps = 24/161 (14%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQ----------EMIKSKILGN 50
S F D K P WFH+ CF+K RP ++ DI N+ +LR DQ + + S LG
Sbjct: 39 SAFHDAKVPNWFHKTCFFKNQRPSSVGDIQNIGNLRFADQKELTDLVENIQEVISAQLGK 98
Query: 51 --------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
IEYAKS+RSTCRGCE KI K +R+ K YD++ G GG P W+H
Sbjct: 99 KRSKAFNLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHH 158
Query: 97 LSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
L CF +R +L + ASG+ +PGF SL DQ V+ +P +
Sbjct: 159 LECFAQLRSELGWFASGEDMPGFQSLADDDQAKVKNAIPPI 199
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYA++ R+TC+GC++ I+K +R++ M + +P W+H +CF + +
Sbjct: 10 EYARTGRATCKGCKSTISKDTLRIAVMVQSAFHD---AKVPNWFHKTCF----FKNQRPS 62
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGVS 142
S I G+L DQK + + ++ + +S
Sbjct: 63 SVGDIQNIGNLRFADQKELTDLVENIQEVIS 93
>gi|347969501|ref|XP_312938.4| AGAP003230-PA [Anopheles gambiae str. PEST]
gi|333468550|gb|EAA08394.4| AGAP003230-PA [Anopheles gambiae str. PEST]
Length = 995
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 92/160 (57%), Gaps = 23/160 (14%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI-----LG------ 49
SP DGK +W+H++CF+KK RP D+ N+ +LR++DQ+ I+ I G
Sbjct: 40 SPMHDGKVAQWYHDDCFFKKQRPATEGDVANIEALRYEDQKKIRDAIGVVPVAGKGKGKK 99
Query: 50 ------------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHL 97
+EYA S R+ CRGCE KI K E+R+ K+ YD++ G GG P W+H
Sbjct: 100 RTAVEAQSLKDYGVEYAPSGRAMCRGCEIKILKDEMRIKKVAYDTEVGMKYGGQPLWHHA 159
Query: 98 SCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
CF +R +L + + +PG+ S++ +DQKI++ LP++
Sbjct: 160 ECFAKLRSELGYFEKAESLPGYRSMKPEDQKILKGLLPAI 199
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCF 100
EY+KSNR+ CR C+ IAK +R++ M Q M G + +WYH CF
Sbjct: 11 EYSKSNRAMCRLCKQAIAKDVLRLAAMV----QSPMHDGKVAQWYHDDCF 56
>gi|22138110|gb|AAM93435.1| PARP-E protein [Drosophila melanogaster]
Length = 613
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 89/161 (55%), Gaps = 24/161 (14%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQ----------EMIKSKILGN 50
S F D K P WFH+ CF+K RP ++ DI N+ +LR DQ + + S LG
Sbjct: 39 SAFHDAKVPNWFHKTCFFKNQRPSSVGDIQNIGNLRFADQKELTDLVENIQEVISAQLGK 98
Query: 51 --------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
IEYAKS+RSTCRGCE KI K +R+ K YD++ G GG P W+H
Sbjct: 99 KRSKAFNLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHH 158
Query: 97 LSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
L CF +R +L + ASG+ +PGF SL DQ V+ +P +
Sbjct: 159 LECFAQLRSELGWFASGEDMPGFQSLADDDQAKVKNAIPPI 199
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYA++ R+TC+GC++ I+K +R++ M + +P W+H +CF + +
Sbjct: 10 EYARTGRATCKGCKSTISKDTLRIAVMVQSAFHD---AKVPNWFHKTCF----FKNQRPS 62
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGVS 142
S I G+L DQK + + ++ + +S
Sbjct: 63 SVGDIQNIGNLRFADQKELTDLVENIQEVIS 93
>gi|332019196|gb|EGI59706.1| Poly [ADP-ribose] polymerase [Acromyrmex echinatior]
Length = 981
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 92/162 (56%), Gaps = 22/162 (13%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG----------- 49
SP DGK P+W+H +CF+ K RP + DI +R+QDQ+ I+ KI
Sbjct: 39 SPVHDGKIPRWYHFKCFFLKQRPSSTNDIACFDQIRNQDQDAIRKKIEECRNVPSASKGR 98
Query: 50 -----------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLS 98
+EYAKS+R+TC GC+ KI KGE R++K +Y+S++ + GG+ W H+
Sbjct: 99 KRTKGSASGDFRVEYAKSSRATCIGCQEKIIKGETRIAKKDYESEEARKFGGLDRWLHVE 158
Query: 99 CFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDG 140
CF +R D+ + G ++PG L K+D+ ++ +LP ++ G
Sbjct: 159 CFVKLRADMGYYGRGDELPGAEQLSKEDRANLKTSLPKMNQG 200
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EYAKS+RS C+ C+ I K +R++ + G IP WYH CF +
Sbjct: 9 VEYAKSDRSKCQSCKQSIMKTSLRLATVVQSPVHD---GKIPRWYHFKCF----FLKQRP 61
Query: 111 ASGKQIPGFGSLEKKDQKIVEA------TLPSLSDGVSKT 144
+S I F + +DQ + +PS S G +T
Sbjct: 62 SSTNDIACFDQIRNQDQDAIRKKIEECRNVPSASKGRKRT 101
>gi|195400291|ref|XP_002058751.1| GJ11149 [Drosophila virilis]
gi|194147473|gb|EDW63180.1| GJ11149 [Drosophila virilis]
Length = 989
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 90/155 (58%), Gaps = 20/155 (12%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQ-------EMIKSKILGN--- 50
SPF DGK P WFH++CF+KK +P ++ DI N +LR DQ E I + G
Sbjct: 39 SPFHDGKMPNWFHKDCFFKKQKPASVGDIKNFENLRFADQTELSKLIETISVTVAGKRSK 98
Query: 51 ----------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
IEY+KS R+ CRGCE KI+K E+RV K YD++ G GG W+HL CF
Sbjct: 99 SEQEALKDFGIEYSKSGRAACRGCELKISKDEVRVFKTVYDTEIGMKYGGQKVWHHLECF 158
Query: 101 NAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLP 135
+R D+ + +G+ +PG+ L+ +D+++V LP
Sbjct: 159 AQMRSDVGWFDTGENLPGYKLLKDEDKELVLKLLP 193
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS R++C+GC+ I K IR++ M G +P W+H CF + A
Sbjct: 10 EYAKSGRASCKGCKTVILKDSIRLAVMVQSPFHD---GKMPNWFHKDCF----FKKQKPA 62
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGVS 142
S I F +L DQ + + ++S V+
Sbjct: 63 SVGDIKNFENLRFADQTELSKLIETISVTVA 93
>gi|195453671|ref|XP_002073889.1| GK14355 [Drosophila willistoni]
gi|194169974|gb|EDW84875.1| GK14355 [Drosophila willistoni]
Length = 994
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 89/161 (55%), Gaps = 24/161 (14%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI--LG--------- 49
SP +DGK P WFH CF+KK RP + DI N +LR DQ I I +G
Sbjct: 39 SPVYDGKVPNWFHVNCFFKKQRPSSAGDIKNFENLRFDDQNEITKLIDTVGVVVEAKSGK 98
Query: 50 -------------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
IEYAKS R+ CRGCE KI K ++R+ K YD++ G GG W+H
Sbjct: 99 KRSKAESGALKDFGIEYAKSGRAACRGCEQKITKDQVRIRKTVYDTEVGMKYGGQALWHH 158
Query: 97 LSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
+ CF +R +L + +G+ +PG+ SL+ +D+K V+ LP++
Sbjct: 159 MECFAQMRSELGWFDTGENLPGYKSLKAEDKKEVQNALPAI 199
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 15/80 (18%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKM----NYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
EYAKS R++C+GC+ IAK +R++ M YD G +P W+H++CF
Sbjct: 10 EYAKSGRASCKGCKNAIAKDTLRLAVMVQSPVYD-------GKVPNWFHVNCF----FKK 58
Query: 108 EFSASGKQIPGFGSLEKKDQ 127
+ +S I F +L DQ
Sbjct: 59 QRPSSAGDIKNFENLRFDDQ 78
>gi|195156920|ref|XP_002019344.1| GL12354 [Drosophila persimilis]
gi|194115935|gb|EDW37978.1| GL12354 [Drosophila persimilis]
Length = 992
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 23/160 (14%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKS------KILGN---- 50
S F D K P WFH+ CF++K RP ++ DI N +LR DQ+ +++ ++ N
Sbjct: 39 SAFHDAKVPNWFHKRCFFEKQRPTSVGDIQNFENLRFDDQKELETLIAVAGSVIANTGKK 98
Query: 51 -------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHL 97
IEYAKS+RS+CRGC+ KI+K +IR+ K +D++ G GG P W+HL
Sbjct: 99 RSKAETTALKDFGIEYAKSSRSSCRGCDQKISKDQIRIRKTVFDTEVGMKYGGQPLWHHL 158
Query: 98 SCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
CF +R +L + +G+ IPG+ SL+ +D+ V LP++
Sbjct: 159 ECFAQLRSELGWFDTGENIPGYKSLKAEDKAEVIRVLPTI 198
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS R++C+GC++ I E+R++ M + +P W+H CF + +
Sbjct: 10 EYAKSGRASCKGCKSAIPMKELRIAVMVQSAFHD---AKVPNWFHKRCF----FEKQRPT 62
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKT 144
S I F +L DQK +E + ++ T
Sbjct: 63 SVGDIQNFENLRFDDQKELETLIAVAGSVIANT 95
>gi|390179180|ref|XP_002137908.2| GA25584 [Drosophila pseudoobscura pseudoobscura]
gi|388859746|gb|EDY68466.2| GA25584 [Drosophila pseudoobscura pseudoobscura]
Length = 995
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 24/161 (14%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKS-------KILGN--- 50
S F D K P WFH+ CF++K RP ++ DI N +LR DQ+ +++ ++ N
Sbjct: 39 SAFHDAKVPNWFHKRCFFEKQRPTSVGDIQNFENLRFDDQKELETLIGAVAGSVISNTGK 98
Query: 51 --------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
IEYAKS+RS+CRGC+ KI+K +IR+ K +D++ G GG P W+H
Sbjct: 99 KRSKAETTALKDFGIEYAKSSRSSCRGCDQKISKDQIRIRKTVFDTEVGMKYGGQPLWHH 158
Query: 97 LSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
L CF +R +L + +G+ IPG+ SL+ +D+ V LP++
Sbjct: 159 LECFAQLRSELGWFDTGENIPGYKSLKAEDKAEVIRVLPTI 199
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS R++C+GC++ I E+R++ M + +P W+H CF + +
Sbjct: 10 EYAKSGRASCKGCKSAIPMKELRIAVMVQSAFHD---AKVPNWFHKRCF----FEKQRPT 62
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGV 141
S I F +L DQK +E + +++ V
Sbjct: 63 SVGDIQNFENLRFDDQKELETLIGAVAGSV 92
>gi|195475738|ref|XP_002090141.1| GE20224 [Drosophila yakuba]
gi|194176242|gb|EDW89853.1| GE20224 [Drosophila yakuba]
Length = 993
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 87/161 (54%), Gaps = 24/161 (14%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI----------LGN 50
S F D K P WFH+ CF+K RP ++ DI+N +LR DQ+ + + LG
Sbjct: 39 SAFHDAKVPNWFHKTCFFKNQRPCSVGDIYNFGNLRFADQKELTDLVENLQGVIGSQLGK 98
Query: 51 --------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
IEYAKS+RSTCRGCE KI K +R+ K YD++ G GG P WYH
Sbjct: 99 KRSKAFNLALKDFGIEYAKSSRSTCRGCEQKIIKDLVRLRKTVYDTEVGMKYGGQPLWYH 158
Query: 97 LSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
L CF +R +L + SG +PG SL DQ V+ LP++
Sbjct: 159 LDCFAQLRSELGWFDSGDNMPGIKSLADDDQAEVKNALPAI 199
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYA++ R+TC+GC++ I +R++ M + +P W+H +CF +
Sbjct: 10 EYARTGRATCKGCKSSIPMDNLRIAVMVQSAFHD---AKVPNWFHKTCF----FKNQRPC 62
Query: 112 SGKQIPGFGSLEKKDQK 128
S I FG+L DQK
Sbjct: 63 SVGDIYNFGNLRFADQK 79
>gi|195062453|ref|XP_001996195.1| GH22365 [Drosophila grimshawi]
gi|193899690|gb|EDV98556.1| GH22365 [Drosophila grimshawi]
Length = 992
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 87/159 (54%), Gaps = 25/159 (15%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
SPF DGK P WFH++CF KK RP + DI N +LR DQ + +K++GN
Sbjct: 39 SPFHDGKVPNWFHKDCFLKKQRPATVGDIKNFENLRFDDQTEL-TKLIGNAQVAVAGKAG 97
Query: 51 --------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
IEY+KS R+ CRGCE KI K E+RV K +D++ G GG W+H
Sbjct: 98 KRSKAEQQAIKDFGIEYSKSGRAACRGCELKINKDEVRVCKTLFDTEVGMKYGGQKVWHH 157
Query: 97 LSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLP 135
L CF +R DL + +G+ +PG+ L+ D+ V LP
Sbjct: 158 LECFAKMRSDLGWFDTGETLPGYKGLKADDKAEVLKLLP 196
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS R++C+GC+ I K +R++ M G +P W+H CF L + A
Sbjct: 10 EYAKSGRASCKGCKTPIPKDSLRLATMVQSPFHD---GKVPNWFHKDCF----LKKQRPA 62
Query: 112 SGKQIPGFGSLEKKDQ 127
+ I F +L DQ
Sbjct: 63 TVGDIKNFENLRFDDQ 78
>gi|157130592|ref|XP_001661932.1| poly [adp-ribose] polymerase [Aedes aegypti]
gi|108871855|gb|EAT36080.1| AAEL011815-PA [Aedes aegypti]
Length = 999
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 31/168 (18%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI--LGN-------- 50
S F DGK +W+HE+CF++K RP DI + LR++DQE ++ KI +GN
Sbjct: 40 SAFHDGKQAQWYHEKCFFQKLRPTTEGDIAHFEGLRYEDQEKLRKKIATVGNGVVVPSST 99
Query: 51 ---------------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIG 89
+EYA S R+TCRGCE KI K E+R+ KM+Y ++ G G
Sbjct: 100 SGKGKGKKRTADQNMVLKDFAVEYAASGRATCRGCEIKILKDEVRIKKMDYTTEVGMKYG 159
Query: 90 GIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
G W+H CF +R +L + G+ +PGF L+K+D+ V+ LP++
Sbjct: 160 GQAMWHHAECFAKLRSELGYFEKGESLPGFNQLKKEDKAKVKELLPAI 207
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS R++C+ C+ KI K E+R+ M + G +WYH CF L +
Sbjct: 11 EYAKSGRASCKMCKNKIDKDELRLGAMVQSAFHD---GKQAQWYHEKCFFQ---KLRPTT 64
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGV 141
G I F L +DQ+ + + ++ +GV
Sbjct: 65 EG-DIAHFEGLRYEDQEKLRKKIATVGNGV 93
>gi|345483042|ref|XP_001604797.2| PREDICTED: poly [ADP-ribose] polymerase isoform 1 [Nasonia
vitripennis]
Length = 990
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 83/151 (54%), Gaps = 29/151 (19%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIK---SKILG-------- 49
SPF DGK +W H CF+KK RPK DI + S+R +DQE+IK K+ G
Sbjct: 39 SPFHDGKLERWHHSNCFFKKQRPKTTGDIAHFDSIRWEDQELIKKNIGKLFGAPAASTSS 98
Query: 50 ------------------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGI 91
+EYAKSNRS CRGCE I KGE+R+SK +Y+S++ + GG+
Sbjct: 99 KGRKRGKAAAGAATHKDFKVEYAKSNRSKCRGCEETIIKGEMRLSKKDYESEEARKFGGL 158
Query: 92 PEWYHLSCFNAVRLDLEFSASGKQIPGFGSL 122
W+H CF +R +L++ G IPG +L
Sbjct: 159 DRWHHFDCFVKLRSELQYFDVGTNIPGVDAL 189
>gi|325297035|ref|NP_001191521.1| poly-(ADP-ribose) polymerase I [Aplysia californica]
gi|256550154|gb|ACU83597.1| poly-(ADP-ribose) polymerase I [Aplysia californica]
Length = 985
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 85/151 (56%), Gaps = 17/151 (11%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG----------- 49
SP FDGK P WFH CFWK+ + DIHN+ SLR +DQE IK++I
Sbjct: 40 SPHFDGKVPNWFHYACFWKRAKCHNADDIHNIHSLRWEDQEKIKAQIGKGGGGDDGGAAS 99
Query: 50 ----NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRL 105
N EYAKS +S CRGCE IAK +R+SK Y+S + KM G W+H+ CF R
Sbjct: 100 TEDFNTEYAKSGKSRCRGCEENIAKDSLRISKKEYESQRAKMYGPQDLWHHVDCFVDKRD 159
Query: 106 DLEFSASGKQ--IPGFGSLEKKDQKIVEATL 134
+L F+ I GF L+ +D++++ A L
Sbjct: 160 ELGFTEQSDPSIIKGFAKLKPEDKELLYAKL 190
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
EYAKS RS C+ C+ IA+G +R++ M G +P W+H +CF
Sbjct: 11 EYAKSGRSGCKACKGNIAQGSLRLAVM---VQSPHFDGKVPNWFHYACF 56
>gi|345483040|ref|XP_003424731.1| PREDICTED: poly [ADP-ribose] polymerase isoform 2 [Nasonia
vitripennis]
Length = 992
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 81/153 (52%), Gaps = 31/153 (20%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG----------- 49
SPF DGK +W H CF+KK RPK DI + S+R +DQE+IK I
Sbjct: 39 SPFHDGKLERWHHSNCFFKKQRPKTTGDIAHFDSIRWEDQELIKKNIAEAESSGAPAAST 98
Query: 50 --------------------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIG 89
+EYAKSNRS CRGCE I KGE+R+SK +Y+S++ + G
Sbjct: 99 SSKGRKRGKAAAGAATHKDFKVEYAKSNRSKCRGCEETIIKGEMRLSKKDYESEEARKFG 158
Query: 90 GIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSL 122
G+ W+H CF +R +L++ G IPG +L
Sbjct: 159 GLDRWHHFDCFVKLRSELQYFDVGTNIPGVDAL 191
>gi|391332355|ref|XP_003740601.1| PREDICTED: poly [ADP-ribose] polymerase-like [Metaseiulus
occidentalis]
Length = 973
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 96/163 (58%), Gaps = 25/163 (15%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI---------LG-- 49
S FDGK KWFH CF+ KN+P++ DI +++++ DQ+ I+ K+ +G
Sbjct: 40 SSSFDGKMTKWFHFACFFLKNKPRSTGDIDGFSNIKYDDQKRIEKKVGSGGGTADLVGRK 99
Query: 50 --------------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWY 95
++EYAK++RSTCRGC+ IAK ++R+SKM YDS++ G P WY
Sbjct: 100 SVSAKEKKNATLEYSVEYAKTSRSTCRGCDMLIAKDQVRISKMVYDSERALAYGPYPGWY 159
Query: 96 HLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLS 138
H+ CF A R L++ + +PG+ SL ++QK+++ +P L+
Sbjct: 160 HVECFIANREQLQWFLPAQDLPGYKSLGIEEQKMLKEKIPKLA 202
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 15/90 (16%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSD-QGKMIGGIPEWYHLSCF---NAVRLD 106
++YAKS R++CR C++ I+K ++R++ + S GKM +W+H +CF N R
Sbjct: 10 VDYAKSGRASCRSCKSPISKDDLRLASVVQSSSFDGKMT----KWFHFACFFLKNKPR-- 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATLPS 136
S I GF +++ DQK +E + S
Sbjct: 64 -----STGDIDGFSNIKYDDQKRIEKKVGS 88
>gi|304421460|gb|ADM32529.1| parp [Bombyx mori]
Length = 965
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 36/170 (21%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
S FFDGK P W HE+CF+KK R + +I N L+++DQ+ IK+ I +
Sbjct: 4 SAFFDGKQPNWHHEDCFFKKRRLNSFTEIANFNVLKNEDQKRIKTTIENSAGAVVMPIQE 63
Query: 51 --------------------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQ 84
+EY+KS+R+TC CE KI K EIR+ K+ YD++
Sbjct: 64 TKTKGKGKRNKRAAPESDNSALKDFKVEYSKSSRATCPECEIKICKDEIRICKILYDTEV 123
Query: 85 GKMIGGIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATL 134
G GG P W+HL CF R +L + A G+ +PGF L+K DQ IV+ +
Sbjct: 124 GMKYGGQPRWHHLPCFVKCRNELLYFAGGENLPGFDDLKKADQIIVKTEI 173
>gi|400840|sp|P31669.1|PARP1_XENLA RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=ADP-ribosyltransferase diphtheria
toxin-like 1; Short=ARTD1; AltName: Full=NAD(+)
ADP-ribosyltransferase 1; Short=ADPRT 1; AltName:
Full=Poly[ADP-ribose] synthase 1
gi|1334661|emb|CAA78126.1| NAD(+) ADP-ribosyltransferase [Xenopus laevis]
Length = 998
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 96/173 (55%), Gaps = 27/173 (15%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI------------- 47
SP FDGK P W H CFWK+ R + DI+ T LR +DQEMIK I
Sbjct: 28 SPMFDGKVPHWHHYSCFWKRARVLSQGDIYGYTELRWEDQEMIKKAIETGGAAAGAGGDS 87
Query: 48 --------LGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHL 97
L + EYAKSNRS C+GCE KI KG+IR+SK + D ++ ++ G I WYH
Sbjct: 88 KGGKGEMTLNDFAAEYAKSNRSACKGCEQKIEKGQIRISKKSVDVERPQL-GMIDRWYHP 146
Query: 98 SCFNAVRLDLEF--SASGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF + R +L+F S S Q+ GF L +D+ ++ LP++ ++G K D +
Sbjct: 147 DCFVSSREELDFLPSYSASQLKGFTILSAEDKDSLKKKLPAVKNEGKRKADEV 199
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 54 AKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCF-NAVRLDLEFSA 111
AKS R++C+ C IAK + ++ M Q M G +P W+H SCF R+
Sbjct: 1 AKSGRASCKKCGDNIAKESLGLAIMV----QSPMFDGKVPHWHHYSCFWKRARV-----L 51
Query: 112 SGKQIPGFGSLEKKDQKIVEATL 134
S I G+ L +DQ++++ +
Sbjct: 52 SQGDIYGYTELRWEDQEMIKKAI 74
>gi|357617199|gb|EHJ70647.1| poly [Danaus plexippus]
Length = 990
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 90/163 (55%), Gaps = 36/163 (22%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI-LGN--------- 50
S F DGK P W HEECF+KK P+ + DI N L+++DQ+ IKSK+ GN
Sbjct: 38 SAFHDGKQPNWHHEECFFKKKCPENISDIANFNKLKNEDQKRIKSKLGTGNPSGVVLPSE 97
Query: 51 ----------------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMI 88
IEYAKS+R+TC+ C+ KI K E+RVSKM YD G
Sbjct: 98 KPKKGKGQKRDNNEKAGLSNYSIEYAKSSRATCKHCDIKICKDEVRVSKMGYDPKYGDH- 156
Query: 89 GGIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVE 131
P W+H+ CF + + F A G++IPGF +L+K+DQ +V+
Sbjct: 157 ---PMWHHVKCFAERQSEFLFFAGGEEIPGFKTLKKEDQNMVK 196
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EYAK+ R++C+ C+AKI +G++R++ M + G P W+H CF + S
Sbjct: 8 VEYAKTGRASCKACKAKIDQGDLRIAIMVQSAFHD---GKQPNWHHEECFFKKKCPENIS 64
Query: 111 ASGKQIPGFGSLEKKDQKIVEATL 134
I F L+ +DQK +++ L
Sbjct: 65 ----DIANFNKLKNEDQKRIKSKL 84
>gi|147903139|ref|NP_001081571.1| poly [ADP-ribose] polymerase 1 [Xenopus laevis]
gi|84569962|gb|AAI10779.1| PARP protein [Xenopus laevis]
Length = 1011
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 95/173 (54%), Gaps = 27/173 (15%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI------------- 47
SP FDGK P W H CFWK+ R + DI+ T LR +DQEMIK I
Sbjct: 41 SPMFDGKVPHWHHYSCFWKRARVLSQGDIYGYTELRWEDQEMIKKAIETGGAAAGAGGDS 100
Query: 48 --------LGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHL 97
L + EYAKSNRS C+GCE KI KG+IR+SK + D ++ ++ G I WYH
Sbjct: 101 KGGKGEMTLNDFAAEYAKSNRSACKGCEQKIEKGQIRISKKSVDVERPQL-GMIDRWYHP 159
Query: 98 SCFNAVRLDLEF--SASGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF + R +L F S S Q+ GF L +D+ ++ LP++ ++G K D +
Sbjct: 160 DCFVSSREELGFLPSYSASQLKGFTILSAEDKDSLKKKLPAVKNEGKRKADEV 212
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCF-NAVRL 105
L EYAKS R++C+ C IAK +R++ M Q M G +P W+H SCF R+
Sbjct: 8 LYRAEYAKSGRASCKKCGDNIAKESLRLAIMV----QSPMFDGKVPHWHHYSCFWKRARV 63
Query: 106 DLEFSASGKQIPGFGSLEKKDQKIVEATL 134
S I G+ L +DQ++++ +
Sbjct: 64 -----LSQGDIYGYTELRWEDQEMIKKAI 87
>gi|327262605|ref|XP_003216114.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 1 [Anolis
carolinensis]
Length = 1006
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 93/168 (55%), Gaps = 22/168 (13%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
SP FDGK P W H CFWK+ R + D+ + LR +DQE IK I
Sbjct: 41 SPMFDGKVPHWHHFSCFWKRARLISHADVDGFSELRWEDQEKIKKSIEAGGAGTGKAGKT 100
Query: 51 --------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102
+ YAKSNRSTC+GCE KI KG IR+SK + ++ ++ G I WYH SCF
Sbjct: 101 EKNLNDFAVGYAKSNRSTCKGCEQKIEKGHIRISKKMVNPEKPQL-GMIDNWYHTSCFIN 159
Query: 103 VRLDLEF--SASGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
R DL F + S Q+ GFG L ++D++ ++ LP+L ++G K D +
Sbjct: 160 CRGDLGFLTTFSASQLLGFGILNEEDKEALKKELPALKNEGKRKGDEV 207
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCF-NAVRLDLEF 109
EYAKS R++C+ C IAK +R++ M Q M G +P W+H SCF RL
Sbjct: 12 EYAKSGRASCKKCGDNIAKDSLRLAIMV----QSPMFDGKVPHWHHFSCFWKRARL---- 63
Query: 110 SASGKQIPGFGSLEKKDQKIVEATL 134
S + GF L +DQ+ ++ ++
Sbjct: 64 -ISHADVDGFSELRWEDQEKIKKSI 87
>gi|327262607|ref|XP_003216115.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 2 [Anolis
carolinensis]
Length = 1009
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 93/171 (54%), Gaps = 25/171 (14%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
SP FDGK P W H CFWK+ R + D+ + LR +DQE IK I
Sbjct: 41 SPMFDGKVPHWHHFSCFWKRARLISHADVDGFSELRWEDQEKIKKSIEAGELQEQEGGKA 100
Query: 51 -----------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC 99
+ YAKSNRSTC+GCE KI KG IR+SK + ++ ++ G I WYH SC
Sbjct: 101 GKTEKNLNDFAVGYAKSNRSTCKGCEQKIEKGHIRISKKMVNPEKPQL-GMIDNWYHTSC 159
Query: 100 FNAVRLDLEF--SASGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
F R DL F + S Q+ GFG L ++D++ ++ LP+L ++G K D +
Sbjct: 160 FINCRGDLGFLTTFSASQLLGFGILNEEDKEALKKELPALKNEGKRKGDEV 210
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCF-NAVRLDLEF 109
EYAKS R++C+ C IAK +R++ M Q M G +P W+H SCF RL
Sbjct: 12 EYAKSGRASCKKCGDNIAKDSLRLAIMV----QSPMFDGKVPHWHHFSCFWKRARL---- 63
Query: 110 SASGKQIPGFGSLEKKDQKIVEATL 134
S + GF L +DQ+ ++ ++
Sbjct: 64 -ISHADVDGFSELRWEDQEKIKKSI 87
>gi|327262609|ref|XP_003216116.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 3 [Anolis
carolinensis]
Length = 1010
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 93/172 (54%), Gaps = 26/172 (15%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
SP FDGK P W H CFWK+ R + D+ + LR +DQE IK I
Sbjct: 41 SPMFDGKVPHWHHFSCFWKRARLISHADVDGFSELRWEDQEKIKKSIEAGGAGTGKATFA 100
Query: 51 ------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLS 98
+ YAKSNRSTC+GCE KI KG IR+SK + ++ ++ G I WYH S
Sbjct: 101 AGKTEKNLNDFAVGYAKSNRSTCKGCEQKIEKGHIRISKKMVNPEKPQL-GMIDNWYHTS 159
Query: 99 CFNAVRLDLEF--SASGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R DL F + S Q+ GFG L ++D++ ++ LP+L ++G K D +
Sbjct: 160 CFINCRGDLGFLTTFSASQLLGFGILNEEDKEALKKELPALKNEGKRKGDEV 211
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCF-NAVRLDLEF 109
EYAKS R++C+ C IAK +R++ M Q M G +P W+H SCF RL
Sbjct: 12 EYAKSGRASCKKCGDNIAKDSLRLAIMV----QSPMFDGKVPHWHHFSCFWKRARL---- 63
Query: 110 SASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKT 144
S + GF L +DQ+ ++ ++ + G K
Sbjct: 64 -ISHADVDGFSELRWEDQEKIKKSIEAGGAGTGKA 97
>gi|301623749|ref|XP_002941174.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Xenopus (Silurana)
tropicalis]
Length = 988
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 92/173 (53%), Gaps = 27/173 (15%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
SP FDGK P W H CFWK+ R + DI T LR DQE IK +
Sbjct: 16 SPMFDGKVPHWHHYSCFWKRARVLSHGDIDGFTELRWDDQEKIKKAVETGGASAGAGGDA 75
Query: 51 -------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHL 97
+EYAKSNRSTC+GCE KI KG+IR+SK D ++ ++ G I WYH
Sbjct: 76 KGGKGEMTLNDFAVEYAKSNRSTCKGCEKKIEKGQIRISKKMVDVERPQL-GMIDRWYHS 134
Query: 98 SCFNAVRLDLEF--SASGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF + R +L F S S Q+ F L+ +D+ ++A LP++ ++G K D +
Sbjct: 135 DCFVSCREELGFLPSYSASQLKAFSILKAEDKDALKAMLPAVKNEGKRKADEV 187
>gi|321464644|gb|EFX75651.1| hypothetical protein DAPPUDRAFT_55885 [Daphnia pulex]
Length = 1004
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 88/169 (52%), Gaps = 26/169 (15%)
Query: 4 FDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQE----MIKSKILGN--------- 50
FDGK W+H +CF+++ RPK+ DI + LR +DQE M+KS I
Sbjct: 42 FDGKMVSWYHFDCFFERQRPKSAGDIEHFDQLRWEDQEKINQMLKSGIAEPSKKGKGKGK 101
Query: 51 ------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPE-WYHL 97
IEYAKS R+ CRGC KI K E+R+SK YD+ G G + + WYH+
Sbjct: 102 TAKVVEPFSDFLIEYAKSGRAACRGCLEKIGKDELRISKKGYDTKGGMRHGQMLDMWYHV 161
Query: 98 SCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDA 146
CF R +LEF + IPGF L D+K++ LP+LS K D
Sbjct: 162 KCFKERREELEFVSGVDTIPGFKDLTADDKKVLSKELPALSANKRKVDG 210
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAK+ R++C+ C+ I +G +R++ + K G + WYH CF + +
Sbjct: 10 EYAKTGRASCKKCKENIPQGTLRLAVI---FQAAKFDGKMVSWYHFDCF----FERQRPK 62
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPS 136
S I F L +DQ+ + L S
Sbjct: 63 SAGDIEHFDQLRWEDQEKINQMLKS 87
>gi|405969920|gb|EKC34863.1| Poly [ADP-ribose] polymerase 1 [Crassostrea gigas]
Length = 994
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 86/152 (56%), Gaps = 22/152 (14%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG----------- 49
SP FDGK P WFH+ CFWK+ + + DIH +LR +DQE +K K+ G
Sbjct: 41 SPVFDGKIPNWFHQACFWKRAKVATIGDIHGFDALRWEDQEKLKEKVGGGGGGGTGGDAV 100
Query: 50 ---------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
+IEYAKS +S C+ CE I K ++R+ K +Y+S + KM G + +W+H+ CF
Sbjct: 101 DGGSDAGDFSIEYAKSGKSKCKACEDFIGKDQVRIGKKDYESHRAKMYGPVDQWHHVDCF 160
Query: 101 NAVRLDLEFSA--SGKQIPGFGSLEKKDQKIV 130
R +LEF + QI GF L+ D++++
Sbjct: 161 VEKRDELEFGSDLGANQIKGFDRLKDDDKEML 192
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS RS+C+ C++ I +G +R++ M G IP W+H +CF A
Sbjct: 12 EYAKSGRSSCKACKSNIGQGSLRLAVM---VQSPVFDGKIPNWFHQACF----WKRAKVA 64
Query: 112 SGKQIPGFGSLEKKDQK 128
+ I GF +L +DQ+
Sbjct: 65 TIGDIHGFDALRWEDQE 81
>gi|348524787|ref|XP_003449904.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Oreochromis
niloticus]
Length = 1014
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 93/173 (53%), Gaps = 27/173 (15%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
SP FDGK P W H CFW++ ++ DI + LR DQ+ +K I
Sbjct: 42 SPMFDGKVPHWHHFSCFWQRASAQSTADIAGFSDLRWDDQQKVKKAIESGGAAGGKGDQK 101
Query: 51 -------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHL 97
+EYAKSNRSTC+GCE KI K +IRVSK D ++ ++ G I WYH
Sbjct: 102 GGAKGEKTLNDFAVEYAKSNRSTCKGCEQKIEKDQIRVSKKTVDPEKPQL-GLIDRWYHT 160
Query: 98 SCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF + R +L F S Q+ GF +L +D++ ++ LP++ S+G KTD +
Sbjct: 161 ACFVSRREELVFKPEYSAAQLKGFNALRAEDKEELKKRLPAVKSEGKRKTDDV 213
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C+ IAK +R++ M Q M G +P W+H SCF
Sbjct: 9 LYRVEYAKSGRASCKKCKENIAKDSLRMAIMV----QSPMFDGKVPHWHHFSCF----WQ 60
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATLPS 136
+ S I GF L DQ+ V+ + S
Sbjct: 61 RASAQSTADIAGFSDLRWDDQQKVKKAIES 90
>gi|410916501|ref|XP_003971725.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Takifugu rubripes]
Length = 1013
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 95/173 (54%), Gaps = 27/173 (15%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
SP FDGK P W H CFW++ ++ DI + LR +DQE IK +
Sbjct: 42 SPMFDGKVPHWHHFSCFWQRAAAQSTSDIDGFSGLRWEDQEKIKKAVESGGATGGGTDSK 101
Query: 51 -------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHL 97
+EYAKSNRSTC+GCE KI K +IRVSK + D ++ ++ G I WYH
Sbjct: 102 SGAKEEKTLNEFAVEYAKSNRSTCKGCEQKIEKDQIRVSKKSVDPEKPQL-GLIDRWYHT 160
Query: 98 SCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF + R +L F + Q+ GF +L +D++ ++ LPS+ ++G K+D +
Sbjct: 161 ACFVSWREELVFKPEYNASQLKGFSNLRAEDKEELKRKLPSIKTEGKRKSDEV 213
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLDLEFS 110
EYAKS R++C+ C+ IAK +R++ M Q M G +P W+H SCF +
Sbjct: 13 EYAKSGRASCKKCKENIAKDSLRMAIMV----QSPMFDGKVPHWHHFSCF----WQRAAA 64
Query: 111 ASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAIS 148
S I GF L +DQ+ ++ + S TD+ S
Sbjct: 65 QSTSDIDGFSGLRWEDQEKIKKAVESGGATGGGTDSKS 102
>gi|170053161|ref|XP_001862547.1| poly [Culex quinquefasciatus]
gi|167873802|gb|EDS37185.1| poly [Culex quinquefasciatus]
Length = 1000
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 88/169 (52%), Gaps = 32/169 (18%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI--LGN-------- 50
S F DGK +W+HE CF+ K RP D+ SLR +DQ+ I+ KI LG
Sbjct: 40 SAFHDGKQAQWYHERCFFGKQRPTTEGDVAGFESLRFEDQKRIREKIASLGGGIVEATPT 99
Query: 51 ----------------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMI 88
+EYA S R+ CRGCE KI K E+R+ K++Y ++ G
Sbjct: 100 GKGKGKGKKRSAEQSNALKDFGVEYAASGRAVCRGCEIKILKDEVRIKKVDYTTEVGMKY 159
Query: 89 GGIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
GG W+H CF +R +L + G+ +PG+ +L+K+D + V+ LP++
Sbjct: 160 GGQALWHHAECFAKLRSELGYFEKGEALPGYRNLKKEDMETVKRLLPAI 208
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS R++C+ C+ KI K E+R+ M + G +WYH CF +
Sbjct: 11 EYAKSGRASCKLCKDKIDKDELRLGAMVQSAFHD---GKQAQWYHERCF----FGKQRPT 63
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGV 141
+ + GF SL +DQK + + SL G+
Sbjct: 64 TEGDVAGFESLRFEDQKRIREKIASLGGGI 93
>gi|443691797|gb|ELT93548.1| hypothetical protein CAPTEDRAFT_223861 [Capitella teleta]
Length = 994
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 83/150 (55%), Gaps = 22/150 (14%)
Query: 7 KTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG----------------- 49
+ P WFH CFWK+ + + DI SLR +DQE IK I G
Sbjct: 37 QVPNWFHSNCFWKRAKVLSQTDIDGFDSLRWEDQEAIKGHIGGGGGGSSSSKGGSAASPL 96
Query: 50 ---NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLD 106
++EYAKS++S CRGC KI K E+RVSK +YDS + KM G + W+H+ CF R D
Sbjct: 97 SDYSVEYAKSSQSGCRGCGNKIGKNEVRVSKKDYDSMKAKMYGPVALWHHVQCFVDARDD 156
Query: 107 LEFSA--SGKQIPGFGSLEKKDQKIVEATL 134
LEF++ I GF L+K+DQ+++ L
Sbjct: 157 LEFTSDMDPTSIVGFKKLKKEDQEMLIGKL 186
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 14/81 (17%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS R++C+ C++ IAK +R++ M +P W+H +CF L
Sbjct: 9 EYAKSGRASCKACKSSIAKSSLRLAIMVQ----------VPNWFHSNCFWKRAKVL---- 54
Query: 112 SGKQIPGFGSLEKKDQKIVEA 132
S I GF SL +DQ+ ++
Sbjct: 55 SQTDIDGFDSLRWEDQEAIKG 75
>gi|113677594|ref|NP_001038407.1| poly [ADP-ribose] polymerase 1 [Danio rerio]
Length = 1013
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 90/173 (52%), Gaps = 27/173 (15%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
SP FDGK P W H CFW + ++ DI T LR DQE +K+ I
Sbjct: 42 SPMFDGKVPHWHHFSCFWLRAAVQSPSDISGFTDLRWDDQEKVKTAIESGGATGGKGGQK 101
Query: 51 -------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHL 97
+EYAKSNRSTC+GC+ KI K +IRVSK D ++ ++ G I WYH
Sbjct: 102 GAAKGEKTLNDFAVEYAKSNRSTCKGCDQKIEKDQIRVSKKTVDPEKPQL-GLIDRWYHT 160
Query: 98 SCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF + R +L F S Q+ GF L +D++ ++ LP++ S+G K D +
Sbjct: 161 GCFVSRREELIFKPEYSAAQLKGFAVLRDEDKEELKKRLPAVKSEGKRKADEV 213
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 15/100 (15%)
Query: 38 QDQEMIKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYH 96
QD ++ K+ EYAKS R++C+ C+ IAK +R++ M Q M G +P W+H
Sbjct: 5 QDDKLYKA------EYAKSGRASCKKCKDNIAKDSLRMAIMV----QSPMFDGKVPHWHH 54
Query: 97 LSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPS 136
SCF +R ++ S I GF L DQ+ V+ + S
Sbjct: 55 FSCF-WLRAAVQ---SPSDISGFTDLRWDDQEKVKTAIES 90
>gi|156546731|ref|XP_001604917.1| PREDICTED: poly [ADP-ribose] polymerase-like [Nasonia vitripennis]
Length = 999
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 88/180 (48%), Gaps = 41/180 (22%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG----------- 49
SPF DGK KW H CF++K RPK +I + S+R +DQE I+ +I
Sbjct: 39 SPFHDGKMVKWHHANCFFQKQRPKTTGEIAHFDSIRWEDQEAIRKQIEEPESGGSSSVIV 98
Query: 50 ------------------------------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMN 79
+EYAKS+RSTC+GC I R+SK +
Sbjct: 99 SSPTETDAKDENKNLKRAATDITASPYSEFKVEYAKSSRSTCKGCGMAIMIHTTRLSKKD 158
Query: 80 YDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSD 139
++S + + GG+ W+HL CF+ +R + +F G IPG +L K+D++ +E LP + D
Sbjct: 159 FESKEARRFGGLERWHHLDCFDKLRKEFQFFDVGTNIPGADTLTKEDKEDLEKYLPKIDD 218
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDS-DQGKMIGGIPEWYHLSCFNAVRLDLEF 109
+EY+K+ R+ C+ C++ IAK +R++ + GKM+ +W+H +CF +
Sbjct: 9 VEYSKTGRAGCKVCKSPIAKESLRIATVVQSPFHDGKMV----KWHHANCF----FQKQR 60
Query: 110 SASGKQIPGFGSLEKKDQKIV 130
+ +I F S+ +DQ+ +
Sbjct: 61 PKTTGEIAHFDSIRWEDQEAI 81
>gi|432945297|ref|XP_004083528.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Oryzias latipes]
Length = 1015
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 27/163 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI---------LGN- 50
SP FDGK P W H CFW++ ++ D+ + LR DQE +K I GN
Sbjct: 42 SPMFDGKVPHWHHFSCFWQRASVQSTADVGGFSDLRWADQEAVKKAIESGGVAGTGKGNS 101
Query: 51 --------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
+EYAKSNRSTC+GC+ KI K +IRVSK D+++ ++ G I WYH
Sbjct: 102 GGAAKGEKTLNDFAVEYAKSNRSTCKGCQQKIEKDQIRVSKKVVDAEKPQL-GLIDRWYH 160
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL 137
+CF + R +L F S Q+ GF L +D++ ++ LP++
Sbjct: 161 TACFVSRREELAFKPDYSAAQLKGFNVLRAEDKEELKKRLPAV 203
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLDLEFS 110
EYAKS +++C+ C+ KIAK +R++ + Q M G +P W+H SCF R ++ +
Sbjct: 13 EYAKSGQASCKKCKEKIAKDSLRMAIVV----QSPMFDGKVPHWHHFSCFWQ-RASVQST 67
Query: 111 ASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKT 144
A + GF L DQ+ V+ + S GV+ T
Sbjct: 68 AD---VGGFSDLRWADQEAVKKAIE--SGGVAGT 96
>gi|194382466|dbj|BAG64403.1| unnamed protein product [Homo sapiens]
Length = 993
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 89/154 (57%), Gaps = 9/154 (5%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIKSKILGNI--EYAKS 56
SP FDGK P W+H CFWK +++ + LR DQ+ +K K LG+ EYAKS
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVK-KTLGDFAAEYAKS 99
Query: 57 NRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA--SGK 114
NRSTC+GC KI KG++R+SK D ++ ++ G I WYH CF R +L F S
Sbjct: 100 NRSTCKGCMEKIEKGQVRLSKKMVDPEKPQL-GMIDRWYHPGCFVKNREELGFRPEYSAS 158
Query: 115 QIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 159 QLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 192
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTD 145
+ ++ GF L DQ+ V+ TL + +K++
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKTLGDFAAEYAKSN 100
>gi|297280655|ref|XP_001090628.2| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 1 [Macaca
mulatta]
Length = 993
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 89/154 (57%), Gaps = 9/154 (5%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIKSKILGNI--EYAKS 56
SP FDGK P W+H CFWK +++ + LR DQ+ +K K LG+ EYAKS
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVK-KTLGDFAAEYAKS 99
Query: 57 NRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA--SGK 114
NRSTC+GC KI KG++R+SK D ++ ++ G I WYH CF R +L F S
Sbjct: 100 NRSTCKGCMEKIEKGQVRLSKKMLDPEKPQL-GMIDRWYHPHCFVKNREELGFRPEYSAS 158
Query: 115 QIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 159 QLKGFSLLAAEDKEALKKQLPGVKSEGKRKGDEV 192
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTD 145
+ ++ GF L DQ+ V+ TL + +K++
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKTLGDFAAEYAKSN 100
>gi|3220000|sp|P26446.2|PARP1_CHICK RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=ADP-ribosyltransferase diphtheria
toxin-like 1; Short=ARTD1; AltName: Full=NAD(+)
ADP-ribosyltransferase 1; Short=ADPRT 1; AltName:
Full=Poly[ADP-ribose] synthase 1
Length = 1011
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 85/162 (52%), Gaps = 27/162 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI------------- 47
SP FDGK P W H CFWK+ R + DI LR +DQE IK I
Sbjct: 41 SPMFDGKVPHWHHYSCFWKRARIVSHTDIDGFPELRWEDQEKIKKAIETGALQEEKGGTR 100
Query: 48 --LGN---------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
+G EYAKSNRSTC+GCE KI KG+IR+SK ++ ++ G I WYH
Sbjct: 101 KEVGKAEKSLTDFAAEYAKSNRSTCKGCEQKIEKGQIRISKKMVHPEKPQL-GMIDNWYH 159
Query: 97 LSCFNAVRLDLEF--SASGKQIPGFGSLEKKDQKIVEATLPS 136
CF + R +L F + Q+ GF L+ +D++ ++ LP+
Sbjct: 160 PDCFVSRRAELGFLPAYGATQLLGFSILKAEDKETLKKQLPA 201
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCF-NAVRLDLEF 109
EYAKS R++C+ C IAK +R++ M Q M G +P W+H SCF R+
Sbjct: 12 EYAKSGRASCKKCGESIAKDSLRLALMV----QSPMFDGKVPHWHHYSCFWKRARI---- 63
Query: 110 SASGKQIPGFGSLEKKDQKIVEATLPS 136
S I GF L +DQ+ ++ + +
Sbjct: 64 -VSHTDIDGFPELRWEDQEKIKKAIET 89
>gi|45383984|ref|NP_990594.1| poly [ADP-ribose] polymerase 1 [Gallus gallus]
gi|63743|emb|CAA36917.1| unnamed protein product [Gallus gallus]
Length = 1011
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 85/162 (52%), Gaps = 27/162 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI------------- 47
SP FDGK P W H CFWK+ R + DI LR +DQE IK I
Sbjct: 41 SPMFDGKVPHWHHYSCFWKRARIVSHTDIDGFPELRWEDQEKIKKAIETGALQEEKGGTR 100
Query: 48 --LGN---------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
+G EYAKSNRSTC+GCE KI KG+IR+SK ++ ++ G I WYH
Sbjct: 101 KEVGKAEKSLTDFAAEYAKSNRSTCKGCEQKIEKGQIRISKKMVHPEKPQL-GMIDNWYH 159
Query: 97 LSCFNAVRLDLEF--SASGKQIPGFGSLEKKDQKIVEATLPS 136
CF + R +L F + Q+ GF L+ +D++ ++ LP+
Sbjct: 160 PDCFVSRRAELGFLPAYGATQLLGFSILKAEDKETLKKQLPA 201
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCF-NAVRLDLEF 109
EYAKS R++C+ C IAK +R++ M Q M G +P W+H SCF R+
Sbjct: 12 EYAKSGRASCKKCGESIAKDSLRLALMV----QSPMFDGKVPHWHHYSCFWKRARI---- 63
Query: 110 SASGKQIPGFGSLEKKDQKIVEATLPS 136
S I GF L +DQ+ ++ + +
Sbjct: 64 -VSHTDIDGFPELRWEDQEKIKKAIET 89
>gi|119590191|gb|EAW69785.1| poly (ADP-ribose) polymerase family, member 1, isoform CRA_b [Homo
sapiens]
Length = 1008
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 89/163 (54%), Gaps = 17/163 (10%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK---------SKILG 49
SP FDGK P W+H CFWK +++ + LR DQ+ +K K LG
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTEKTLG 100
Query: 50 NI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH CF R +L
Sbjct: 101 DFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQL-GMIDRWYHPGCFVKNREEL 159
Query: 108 EFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 GFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 202
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|71679667|gb|AAI00002.1| Poly (ADP-ribose) polymerase family, member 1 [Danio rerio]
Length = 1011
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 89/173 (51%), Gaps = 29/173 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
SP FDGK P W H CFW + ++ DI T LR DQE +K+ I
Sbjct: 42 SPMFDGKVPHWHHFSCFWLRAAVQSPSDISGFTDLRWDDQEKVKTAIESGGATGGKGGQK 101
Query: 51 -------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHL 97
+EYAKSNRSTC+GC+ KI K IRVSK D ++ ++ G I WYH
Sbjct: 102 GAAKGEKTLNDFAVEYAKSNRSTCKGCDQKIEK--IRVSKKTVDPEKPQL-GLIDRWYHT 158
Query: 98 SCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF + R +L F S Q+ GF L +D++ ++ LP++ S+G K D +
Sbjct: 159 GCFVSRREELIFKPEYSAAQLKGFAVLRDEDKEELKKRLPAVKSEGKRKADEV 211
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 15/100 (15%)
Query: 38 QDQEMIKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYH 96
QD ++ K+ EYAKS R++C+ C+ IAK +R++ M Q M G +P W+H
Sbjct: 5 QDDKLYKA------EYAKSGRASCKKCKDNIAKDSLRMAIMV----QSPMFDGKVPHWHH 54
Query: 97 LSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPS 136
SCF +R ++ S I GF L DQ+ V+ + S
Sbjct: 55 FSCF-WLRAAVQ---SPSDISGFTDLRWDDQEKVKTAIES 90
>gi|296230270|ref|XP_002760625.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 2 [Callithrix
jacchus]
Length = 992
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 87/154 (56%), Gaps = 9/154 (5%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIH--NVTSLRHQDQEMIKSKILGNI--EYAKS 56
SP FDGK P W+H CFWK DI + LR DQ+ + K LG+ EYAKS
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDIEVDGFSELRWDDQQKAE-KTLGDFAAEYAKS 99
Query: 57 NRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA--SGK 114
NRSTC+GC KI KG++R+SK D ++ ++ G I WYH CF R +L F S
Sbjct: 100 NRSTCKGCMEKIEKGQMRLSKKMLDPEKPQL-GMIDRWYHPDCFVKNREELGFRPEYSAS 158
Query: 115 QIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 159 QLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 192
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTD 145
+ ++ GF L DQ+ E TL + +K++
Sbjct: 64 IRHPDI--EVDGFSELRWDDQQKAEKTLGDFAAEYAKSN 100
>gi|417405597|gb|JAA49506.1| Putative nad+ adp-ribosyltransferase parp required for poly-adp
ribosylation of nuclear [Desmodus rotundus]
Length = 1014
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 94/181 (51%), Gaps = 28/181 (15%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHTIWQPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQG 100
Query: 45 ------SKILGN--IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ +EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 AVGSKTEKTLGDFAVEYAKSNRSTCKGCMEKIDKGQVRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAISHFLLI 153
CF R +L F S Q+ GF L +D++ ++ LP + S+G K+D + +
Sbjct: 160 PHCFVENREELNFRPEYSASQLKGFSLLAPEDKEDLKKQLPGVKSEGKRKSDEVDGIDRV 219
Query: 154 P 154
P
Sbjct: 220 P 220
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 17/92 (18%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV--- 103
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHT 63
Query: 104 --RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ D+E + GF L DQ+ V+ T
Sbjct: 64 IWQPDVE-------VDGFSELRWDDQQKVKKT 88
>gi|350539795|ref|NP_001233650.1| poly [ADP-ribose] polymerase 1 [Cricetulus griseus]
gi|17380223|sp|Q9R152.3|PARP1_CRIGR RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=ADP-ribosyltransferase diphtheria
toxin-like 1; Short=ARTD1; AltName: Full=NAD(+)
ADP-ribosyltransferase 1; Short=ADPRT 1; AltName:
Full=Poly[ADP-ribose] synthase 1
gi|5616520|gb|AAD45817.1|AF168781_1 poly ADP-ribose polymerase [Cricetulus griseus]
Length = 1013
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 92/174 (52%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GSGGKSEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GF L +D+++++ LP + S+G K D +
Sbjct: 160 PTCFVKNREELGFRPEYSASQLKGFSLLSAEDKEVLKKQLPGVKSEGKRKGDEV 213
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV 103
S+ L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 5 SERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKV 60
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 61 GHSIR--QPDVEVDGFSELRWDDQQKVKKT 88
>gi|345329505|ref|XP_001514646.2| PREDICTED: poly [ADP-ribose] polymerase 1-like [Ornithorhynchus
anatinus]
Length = 971
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 91/173 (52%), Gaps = 29/173 (16%)
Query: 3 FFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIK------------------ 44
FDGK P W H CFWK+ R + ++ LR DQE IK
Sbjct: 1 MFDGKVPHWHHFTCFWKRARVISHAEVDGFPELRWDDQEKIKKAIETGGAATGKGGDQDG 60
Query: 45 -----SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHL 97
K L + EYAKSNRSTC+GC+ KI KG++R+SK D + ++ G I WYH
Sbjct: 61 GGGKGEKTLNDFAAEYAKSNRSTCKGCDQKIEKGQVRLSKKMVDPVKPQL-GMIDRWYHP 119
Query: 98 SCFNAVRLDLEF--SASGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF + R++L F + Q+ GFG L+ +D++ ++ LP++ S+G K D +
Sbjct: 120 DCFVSRRVELGFLPQYNASQLKGFGILKPEDKETLKKQLPAVKSEGKRKGDEV 172
>gi|449682408|ref|XP_004210069.1| PREDICTED: poly [ADP-ribose] polymerase 1-like, partial [Hydra
magnipapillata]
Length = 568
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 86/151 (56%), Gaps = 21/151 (13%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG----------- 49
SP FDGK P+W+H CF+KK +P + DI N SLR DQE ++ +I
Sbjct: 239 SPHFDGKIPQWYHYSCFFKKFKPLNVSDIKNFDSLRWDDQEKLREQIGCPQKKDVVDGPS 298
Query: 50 --------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFN 101
IEYAKS R+ CR CE KI K IR++K+ +S++ K G IP WYH+ CF
Sbjct: 299 NSTVNKDFCIEYAKSGRAKCRKCEEKIEKDIIRIAKI-MESEESKFKGLIPFWYHVKCFA 357
Query: 102 AVRLDLEF-SASGKQIPGFGSLEKKDQKIVE 131
+ +LE + + +I G+G L ++DQ+ ++
Sbjct: 358 LSKSELEAQNLTSNEIDGWGELSEEDQEKLQ 388
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF 109
N EYAKS R+ C+ C+ I K +R++KM G IP+WYH SCF L
Sbjct: 208 NAEYAKSGRAGCKSCKCNIGKDSLRIAKM---VQSPHFDGKIPQWYHYSCFFKKFKPLNV 264
Query: 110 SASGKQIPGFGSLEKKDQK 128
S I F SL DQ+
Sbjct: 265 S----DIKNFDSLRWDDQE 279
>gi|344278585|ref|XP_003411074.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Loxodonta africana]
Length = 1108
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 88/174 (50%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNR--PKALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDG+ P W+H CFWK P +D+ + LR DQ+ +K
Sbjct: 135 SPIFDGRVPHWYHFSCFWKVGHTLPHPDVDVDGFSELRWDDQQKVKKTAEAGGVAGKGQD 194
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG +R+SK D ++ +M G I WYH
Sbjct: 195 GSDSKLDKTLGDFTAEYAKSNRSTCKGCMEKIEKGHMRLSKKMLDPEKPQM-GVIDRWYH 253
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R L F S QI GF L +D++ ++ P + S+G + D +
Sbjct: 254 PNCFVQNREKLGFRPEYSASQIAGFSILTPEDREFLKKLFPKVKSEGKRRGDEV 307
>gi|322789314|gb|EFZ14626.1| hypothetical protein SINV_01622 [Solenopsis invicta]
Length = 383
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 24/159 (15%)
Query: 3 FFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI---------LGN--- 50
F +T W+H +CF+K+ P ++ +I N L +DQ I+ KI +G
Sbjct: 60 LFRERTSGWYHFDCFFKEQNPSSVDEIGNFHELCDEDQSAIQKKIEEHNNTPPTIGRKRT 119
Query: 51 ------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLS 98
+EYAKS+RS C GC I KG+ R+SK ++ S + K +GG+ W+H+
Sbjct: 120 ISYSDGRYSDFRVEYAKSSRSMCMGCLRYITKGQTRISKKDHKSRKAKRLGGLERWHHVE 179
Query: 99 CFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
CF R D+ + SG ++PG L K+DQ+ ++ LP +
Sbjct: 180 CFAKFRADIGYYGSGDELPGAAQLSKEDQQSLKVLLPRV 218
>gi|126306928|ref|XP_001368346.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Monodelphis domestica]
Length = 1011
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 90/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNR--PKALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W H CFWK+ +A L++ LR DQ+ IK
Sbjct: 41 SPMFDGKIPNWHHYACFWKRGLVISQAELEVDGFLELRWDDQQKIKKTIETGGLTGGGSQ 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K L N EYAKSNRS C+GC+ KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 DGGGKGEKTLINFAAEYAKSNRSACKGCQQKIEKGQVRLSKKMIDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEF--SASGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q GF L+ +D++ ++ LP++ ++G K D +
Sbjct: 160 PDCFVKCRDELGFLPQYSASQFKGFSILQPEDKETLKKQLPAVKTEGKRKGDEV 213
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLDLEFS 110
EYAKS R++C+ C IAK +R++ M Q M G IP W+H +CF + L S
Sbjct: 12 EYAKSGRASCKKCGESIAKDSLRLAIMV----QSPMFDGKIPNWHHYACF--WKRGLVIS 65
Query: 111 ASGKQIPGFGSLEKKDQKIVEATLPS 136
+ ++ GF L DQ+ ++ T+ +
Sbjct: 66 QAELEVDGFLELRWDDQQKIKKTIET 91
>gi|395537486|ref|XP_003770730.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Sarcophilus
harrisii]
Length = 1115
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 89/176 (50%), Gaps = 30/176 (17%)
Query: 1 SPFFDGKTPKWFHEECFWKKNR--PKALLDIHNVTSLRHQDQEMIKSKILGN-------- 50
SP FDGK P W H CFWK+ +A L++ LR DQ+ IK I
Sbjct: 142 SPMFDGKVPNWHHYACFWKRGLVISQAELEVDGFLELRWDDQQKIKKTIEAGGLTGGKSG 201
Query: 51 ----------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEW 94
EYAKSNRS C+GC+ KI KG++R+SK D ++ ++ G I W
Sbjct: 202 GQDGGGKGEKTLINFAAEYAKSNRSACKGCQQKIEKGQVRLSKKMIDPEKPQL-GMIDRW 260
Query: 95 YHLSCFNAVRLDLEF--SASGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
YH CF R +L F S Q+ GF L+ +D++ ++ LP++ ++G K D +
Sbjct: 261 YHPDCFVKCRDELGFLPQYSASQLKGFSILQPEDKETLKKQLPAVKTEGKRKGDEV 316
>gi|395836171|ref|XP_003791037.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Otolemur garnettii]
Length = 1014
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 90/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR +DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDMEVDGFSELRWEDQQKVKKTSEAGGVTGKGQA 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GGGSKTEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GF L +D++ + LP + S+G K D I
Sbjct: 160 PNCFVKNREELGFRPEYSASQLKGFSLLTAEDKEALRKQLPGVKSEGKRKGDEI 213
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L +DQ+ V+ T
Sbjct: 64 IRH--PDMEVDGFSELRWEDQQKVKKT 88
>gi|281354063|gb|EFB29647.1| hypothetical protein PANDA_016433 [Ailuropoda melanoleuca]
Length = 981
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 90/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNR--PKALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 5 SPMFDGKVPHWYHFSCFWKVGHCIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 64
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K L + EYAKSNRSTC+GC KI KG+IR+SK D ++ ++ G I WYH
Sbjct: 65 GGGGKTDKTLADFAAEYAKSNRSTCKGCMEKIEKGQIRLSKKMLDPEKPQL-GMIDRWYH 123
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GFG L +D++ ++ LP + S+G K D +
Sbjct: 124 PNCFVKNREELGFRPEYSASQLKGFGLLTAEDKETLKKQLPGVKSEGKRKGDEV 177
>gi|301782649|ref|XP_002926747.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Ailuropoda
melanoleuca]
Length = 1018
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 90/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNR--PKALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 42 SPMFDGKVPHWYHFSCFWKVGHCIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 101
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K L + EYAKSNRSTC+GC KI KG+IR+SK D ++ ++ G I WYH
Sbjct: 102 GGGGKTDKTLADFAAEYAKSNRSTCKGCMEKIEKGQIRLSKKMLDPEKPQL-GMIDRWYH 160
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GFG L +D++ ++ LP + S+G K D +
Sbjct: 161 PNCFVKNREELGFRPEYSASQLKGFGLLTAEDKETLKKQLPGVKSEGKRKGDEV 214
>gi|348553190|ref|XP_003462410.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Cavia porcellus]
Length = 1011
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 90/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRQPDIEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PDCFVKNREELGFRPEYSANQLKGFSLLTAEDKETLKKQLPGVKSEGKRKGDEV 213
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRAEYAKSGRASCKKCGESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IR--QPDIEVDGFSELRWDDQQKVKKT 88
>gi|6978455|ref|NP_037195.1| poly [ADP-ribose] polymerase 1 [Rattus norvegicus]
gi|3123251|sp|P27008.4|PARP1_RAT RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=ADP-ribosyltransferase diphtheria
toxin-like 1; Short=ARTD1; AltName: Full=NAD(+)
ADP-ribosyltransferase 1; Short=ADPRT 1; AltName:
Full=Poly[ADP-ribose] synthase 1
gi|2896792|gb|AAC53544.1| poly(ADP-ribose) polymerase [Rattus norvegicus]
gi|55250408|gb|AAH85765.1| Poly (ADP-ribose) polymerase 1 [Rattus norvegicus]
gi|149040870|gb|EDL94827.1| poly (ADP-ribose) polymerase family, member 1 [Rattus norvegicus]
Length = 1014
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 91/174 (52%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + ++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRQPDTEVDGFSELRWDDQQKVKKTAEAGGVAGKGQH 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GGGGKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GF L +D++ ++ LP++ S+G K D +
Sbjct: 160 PTCFVKNRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAVKSEGKRKCDEV 213
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ + ++ GF L DQ+ V+ T
Sbjct: 64 IRQPDT--EVDGFSELRWDDQQKVKKT 88
>gi|444708489|gb|ELW49552.1| Poly [ADP-ribose] polymerase 1 [Tupaia chinensis]
Length = 1081
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 90/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 66 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 125
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 126 GVGSKTEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQL-GMIDRWYH 184
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
SCF R +L F S Q+ GF L +D++ ++ LP + ++G K D +
Sbjct: 185 PSCFVKNRAELGFRPEYSASQLKGFSLLTAEDKETLKKQLPGVKNEGKRKGDEV 238
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 24/108 (22%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKM----------------------NYDSDQG 85
L EYAKS R++C+ C I K +R++ M +
Sbjct: 8 LYRAEYAKSGRASCKKCSESIPKDSLRMAIMVQFMKPDDPELPSQYHLSVKPHRREKHSP 67
Query: 86 KMIGGIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
G +P WYH SCF V + ++ GF L DQ+ V+ T
Sbjct: 68 MFDGKVPHWYHFSCFWKVGHSIRHPDV--EVDGFSELRWDDQQKVKKT 113
>gi|431906515|gb|ELK10638.1| Poly [ADP-ribose] polymerase 1 [Pteropus alecto]
Length = 1011
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 90/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIWQPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GVGGKTEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
SCF R +L F S Q+ GF L +D++ ++ LP + +G K D +
Sbjct: 160 PSCFVQSREELGFRPEYSASQLKGFSLLSPEDKEALKKQLPGVKGEGKRKGDEV 213
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 17/92 (18%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV--- 103
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 104 --RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ D+E + GF L DQ+ V+ T
Sbjct: 64 IWQPDVE-------VDGFSELRWDDQQKVKKT 88
>gi|335296118|ref|XP_003357689.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Sus scrofa]
Length = 1018
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 88/174 (50%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIH--NVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK DI + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHAIRHPDIEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG +R+SK D ++ ++ G I WYH
Sbjct: 101 GVGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGHVRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PNCFVQNREELGFRPEYSASQLKGFSLLTAEDKEALKKQLPGIKSEGKRKGDEV 213
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 17/92 (18%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCF----NA 102
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF +A
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHA 63
Query: 103 VR-LDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+R D+E + GF L DQ+ V+ T
Sbjct: 64 IRHPDIE-------VDGFSELRWDDQQKVKKT 88
>gi|190167|gb|AAA60137.1| poly(ADP-ribose) polymerase [Homo sapiens]
Length = 1014
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 88/174 (50%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIH--NVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK D+ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVQVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ Q+ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--QVDGFSELRWDDQQKVKKT 88
>gi|123981466|gb|ABM82562.1| poly (ADP-ribose) polymerase family, member 1 [synthetic construct]
Length = 1014
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|297661828|ref|XP_002809429.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 2 [Pongo abelii]
Length = 951
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 86/152 (56%), Gaps = 9/152 (5%)
Query: 3 FFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIKSKILGNI--EYAKSNR 58
FDGK P W+H CFWK +++ + LR DQ+ + K LG+ EYAKSNR
Sbjct: 1 MFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKAE-KTLGDFAAEYAKSNR 59
Query: 59 STCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA--SGKQI 116
STC+GC KI KG++R+SK D ++ ++ G I WYH CF R +L F S Q+
Sbjct: 60 STCKGCMEKIEKGQVRLSKKMLDPEKPQL-GMIDRWYHPGCFVKNREELGFRPEYSASQL 118
Query: 117 PGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
GF L +D++ ++ LP + S+G K D +
Sbjct: 119 KGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 150
>gi|156523968|ref|NP_001609.2| poly [ADP-ribose] polymerase 1 [Homo sapiens]
gi|130781|sp|P09874.4|PARP1_HUMAN RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=ADP-ribosyltransferase diphtheria
toxin-like 1; Short=ARTD1; AltName: Full=NAD(+)
ADP-ribosyltransferase 1; Short=ADPRT 1; AltName:
Full=Poly[ADP-ribose] synthase 1
gi|21693601|gb|AAM75364.1|AF524947_1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) [Homo
sapiens]
gi|178190|gb|AAA51663.1| NAD+ ADP-ribosyltransferase [Homo sapiens]
gi|119590189|gb|EAW69783.1| poly (ADP-ribose) polymerase family, member 1, isoform CRA_a [Homo
sapiens]
gi|119590190|gb|EAW69784.1| poly (ADP-ribose) polymerase family, member 1, isoform CRA_a [Homo
sapiens]
Length = 1014
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|426333983|ref|XP_004065376.1| PREDICTED: LOW QUALITY PROTEIN: poly [ADP-ribose] polymerase 1
[Gorilla gorilla gorilla]
Length = 1021
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|337424|gb|AAB59447.1| poly(ADP-ribose) synthetase [Homo sapiens]
Length = 1014
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDKV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSERASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|190267|gb|AAA60155.1| poly(ADP-ribose) polymerase [Homo sapiens]
Length = 1014
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|22902366|gb|AAH37545.1| Poly (ADP-ribose) polymerase 1 [Homo sapiens]
gi|123996301|gb|ABM85752.1| poly (ADP-ribose) polymerase family, member 1 [synthetic construct]
Length = 1014
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|397487818|ref|XP_003814976.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Pan paniscus]
gi|410223934|gb|JAA09186.1| poly (ADP-ribose) polymerase 1 [Pan troglodytes]
gi|410253044|gb|JAA14489.1| poly (ADP-ribose) polymerase 1 [Pan troglodytes]
gi|410295906|gb|JAA26553.1| poly (ADP-ribose) polymerase 1 [Pan troglodytes]
gi|410335525|gb|JAA36709.1| poly (ADP-ribose) polymerase 1 [Pan troglodytes]
Length = 1014
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|189065421|dbj|BAG35260.1| unnamed protein product [Homo sapiens]
Length = 1014
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|410034528|ref|XP_003949754.1| PREDICTED: LOW QUALITY PROTEIN: poly [ADP-ribose] polymerase 1 [Pan
troglodytes]
Length = 1014
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|380809822|gb|AFE76786.1| poly [ADP-ribose] polymerase 1 [Macaca mulatta]
gi|383412919|gb|AFH29673.1| poly [ADP-ribose] polymerase 1 [Macaca mulatta]
gi|384940826|gb|AFI34018.1| poly [ADP-ribose] polymerase 1 [Macaca mulatta]
Length = 1014
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQA 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PHCFVKNREELGFRPEYSASQLKGFSLLAAEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|355745871|gb|EHH50496.1| hypothetical protein EGM_01339 [Macaca fascicularis]
Length = 1014
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQA 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PHCFVKNREELGFRPEYSASQLKGFSLLAAEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|355558712|gb|EHH15492.1| hypothetical protein EGK_01593 [Macaca mulatta]
Length = 1014
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQA 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PHCFVKNREELGFRPEYSASQLKGFSLLAAEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|109018052|ref|XP_001090984.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 4 [Macaca
mulatta]
Length = 1014
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQA 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PHCFVKNREELGFRPEYSASQLKGFSLLAAEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|296230268|ref|XP_002760624.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 1 [Callithrix
jacchus]
Length = 1013
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 88/174 (50%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIH--NVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK DI + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDIEVDGFSELRWDDQQKVKKTAEAGGMTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PDCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDI--EVDGFSELRWDDQQKVKKT 88
>gi|403277375|ref|XP_003930339.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Saimiri boliviensis
boliviensis]
Length = 1013
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 88/174 (50%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIH--NVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK DI + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDIEVDGFSELRWDDQQKVKKTAEAGGMTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PDCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDI--EVDGFSELRWDDQQKVKKT 88
>gi|402857047|ref|XP_003893085.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Papio anubis]
Length = 1153
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 181 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 240
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 241 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQL-GMIDRWYH 299
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 300 PHCFVKNREELGFRPEYSASQLKGFSLLAAEDKEALKKQLPGVKSEGKRKGDEV 353
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 148 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 203
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 204 IRHPDV--EVDGFSELRWDDQQKVKKT 228
>gi|332252144|ref|XP_003275213.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Nomascus leucogenys]
Length = 955
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIH--NVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK DI + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDIEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 RIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GF L +D++ ++ LP + ++G K D +
Sbjct: 160 PNCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKNEGKRKGDEV 213
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDI--EVDGFSELRWDDQQKVKKT 88
>gi|355709317|gb|AES03551.1| poly ADP-ribose polymerase 1 [Mustela putorius furo]
Length = 178
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIKS------------- 45
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 4 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 63
Query: 46 -------KILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K L + EYAKSNRSTC+GC KI KG+IR+SK D ++ + +G I WYH
Sbjct: 64 GGGGKTDKTLADFAAEYAKSNRSTCKGCMEKIEKGQIRLSKKMLDPEKPQ-LGMIDRWYH 122
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F A S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 123 PDCFVRNREELGFRAEYSASQLKGFSLLAAEDKETLKKQLPGVKSEGKRKGDEV 176
>gi|344255078|gb|EGW11182.1| Poly [ADP-ribose] polymerase 1 [Cricetulus griseus]
Length = 971
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 28/172 (16%)
Query: 3 FFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK---------------- 44
FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 1 MFDGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQDGS 60
Query: 45 ----SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLS 98
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH +
Sbjct: 61 GGKSEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQL-GMIDRWYHPT 119
Query: 99 CFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D+++++ LP + S+G K D +
Sbjct: 120 CFVKNREELGFRPEYSASQLKGFSLLSAEDKEVLKKQLPGVKSEGKRKGDEV 171
>gi|116283598|gb|AAH18620.1| PARP1 protein [Homo sapiens]
Length = 232
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 91/176 (51%), Gaps = 32/176 (18%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ +G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEK-PQLGMIDRWYH 159
Query: 97 LSCFNAVRLDL----EFSASGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L E+SAS Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PGCFVKNREELGFRPEYSAS--QLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV 103
S L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 5 SDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKV 60
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 61 GHSIRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|33878477|gb|AAH14206.1| PARP1 protein [Homo sapiens]
Length = 250
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 91/176 (51%), Gaps = 32/176 (18%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ +G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEK-PQLGMIDRWYH 159
Query: 97 LSCFNAVRLDL----EFSASGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L E+SAS Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PGCFVKNREELGFRPEYSAS--QLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV 103
S L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 5 SDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKV 60
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 61 GHSIRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|410985663|ref|XP_003999138.1| PREDICTED: LOW QUALITY PROTEIN: poly [ADP-ribose] polymerase 1
[Felis catus]
Length = 1013
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K L + EYAKS+RSTC+GC KI KG+IR+SK D ++ ++ G I WYH
Sbjct: 101 AGGGKAEKTLADFAAEYAKSSRSTCKGCMEKIEKGQIRLSKKMLDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GFG L +D++ ++ LP + S+G K D +
Sbjct: 160 PDCFVKNREELGFRPEFSAGQLKGFGLLTPEDKETLKKQLPGVKSEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|74197055|dbj|BAE35080.1| unnamed protein product [Mus musculus]
Length = 1014
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRS C+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GSGGKAEKTLGDFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GF L +D++ ++ LP++ ++G K D +
Sbjct: 160 PTCFVKKRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGDEV 213
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV 103
S+ L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 5 SERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKV 60
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 61 GHSIR--QPDVEVDGFSELRWDDQQKVKKT 88
>gi|74198526|dbj|BAE39743.1| unnamed protein product [Mus musculus]
Length = 1014
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRS C+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GSGGKAEKTLGDFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GF L +D++ ++ LP++ ++G K D +
Sbjct: 160 PTCFVKKRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV 103
S+ L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 5 SERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKV 60
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 61 GHSIR--QPDVEVDGFSELRWDDQQKVKKT 88
>gi|74214619|dbj|BAE31150.1| unnamed protein product [Mus musculus]
Length = 973
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRS C+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GSGGKAEKTLGDFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GF L +D++ ++ LP++ ++G K D +
Sbjct: 160 PTCFVKKRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV 103
S+ L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 5 SERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKV 60
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 61 GHSIR--QPDVEVDGFSELRWDDQQKVKKT 88
>gi|74142035|dbj|BAE41080.1| unnamed protein product [Mus musculus]
Length = 1014
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRS C+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GSGGKAEKTLGDFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GF L +D++ ++ LP++ ++G K D +
Sbjct: 160 PTCFVKKRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV 103
S+ L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 5 SERLYRVEYAKSGRASCKKCSESIPKDSLRMTIMV----QSPMFDGKVPHWYHFSCFWKV 60
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 61 GHSIR--QPDVEVDGFSELRWDDQQKVKKT 88
>gi|74141622|dbj|BAE38574.1| unnamed protein product [Mus musculus]
Length = 1014
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRS C+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GSGGKAEKTLGDFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GF L +D++ ++ LP++ ++G K D +
Sbjct: 160 PTCFVKKRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV 103
S+ L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 5 SERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKV 60
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 61 GHSIR--QPDVEVDGFSELRWDDQQKVKKT 88
>gi|20806109|ref|NP_031441.2| poly [ADP-ribose] polymerase 1 [Mus musculus]
gi|15080598|gb|AAH12041.1| Poly (ADP-ribose) polymerase family, member 1 [Mus musculus]
gi|26326859|dbj|BAC27173.1| unnamed protein product [Mus musculus]
gi|26353740|dbj|BAC40500.1| unnamed protein product [Mus musculus]
gi|148681205|gb|EDL13152.1| poly (ADP-ribose) polymerase family, member 1 [Mus musculus]
Length = 1014
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRS C+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GSGGKAEKTLGDFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GF L +D++ ++ LP++ ++G K D +
Sbjct: 160 PTCFVKKRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV 103
S+ L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 5 SERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKV 60
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 61 GHSIR--QPDVEVDGFSELRWDDQQKVKKT 88
>gi|74144748|dbj|BAE27352.1| unnamed protein product [Mus musculus]
Length = 1014
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRS C+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GSGGKAEKTLGDFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GF L +D++ ++ LP++ ++G K D +
Sbjct: 160 PTCFVKKRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV 103
S+ L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 5 SERLYRVEYAKSGRASCKKCSESIPKDSLRMTIMV----QSPMFDGKVPHWYHFSCFWKV 60
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 61 GHSIR--QPDVEVDGFSELRWDDQQKVKKT 88
>gi|351703428|gb|EHB06347.1| Poly [ADP-ribose] polymerase 1 [Heterocephalus glaber]
Length = 1132
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 89/174 (51%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 165 SPMFDGKVPHWYHFSCFWKMGHTIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 224
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYA+SNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 225 GVGGKAEKTLGDFAAEYARSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQL-GMIDRWYH 283
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F + Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 284 PDCFVKNREELGFQPEYNASQLKGFNLLSAEDKEALKKQLPGVKSEGKRKGDEV 337
>gi|130782|sp|P11103.3|PARP1_MOUSE RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=ADP-ribosyltransferase diphtheria
toxin-like 1; Short=ARTD1; AltName: Full=NAD(+)
ADP-ribosyltransferase 1; Short=ADPRT 1; AltName:
Full=Poly[ADP-ribose] synthase 1; Short=msPARP
gi|49894|emb|CAA32421.1| unnamed protein product [Mus musculus]
Length = 1013
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 91/174 (52%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGQSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRS C+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 101 GSGGKAEKTLGDFAAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+CF R +L F S Q+ GF L +D++ ++ LP++ ++G K D +
Sbjct: 160 PTCFVKKRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGDEV 213
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV 103
S+ L ++YAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 5 SERLYRVQYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKV 60
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 61 GQSIRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|168270914|dbj|BAG10250.1| poly [ADP-ribose] polymerase-1 [synthetic construct]
Length = 1014
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 88/174 (50%), Gaps = 28/174 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+ K D ++ ++ G I WYH
Sbjct: 101 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLFKKMVDPEKPQL-GMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 160 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 213
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
>gi|47224331|emb|CAG09177.1| unnamed protein product [Tetraodon nigroviridis]
Length = 233
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 90/191 (47%), Gaps = 57/191 (29%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
SP FDGK P W H CFW++ ++ DI +SLR +DQE +K I
Sbjct: 42 SPMFDGKVPHWHHFSCFWQRAAAQSTSDIDGFSSLRWEDQEKVKKAIESGGATGGGTHSK 101
Query: 51 -------------IEYAKSNRSTCRGCEAKIAK--------------------------- 70
+EYAKSNRSTC+GCE KI K
Sbjct: 102 GGAKAEKTLSEFAVEYAKSNRSTCKGCEQKIEKVGTEVYLDIKTIETLRVHHYFLSLLFQ 161
Query: 71 GEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDL----EFSASGKQIPGFGSLEKKD 126
+IRVSK D ++ ++ G I WYH +CF + R +L E+SAS Q+ GF +L +D
Sbjct: 162 DQIRVSKKTIDPEKPQL-GLIDRWYHTACFVSRREELLFKPEYSAS--QLKGFNTLRAED 218
Query: 127 QKIVEATLPSL 137
++ ++ LP +
Sbjct: 219 KEELKKRLPEV 229
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L EYAKS R++C+ C+ IAK +R++ M Q M G +P W+H SCF
Sbjct: 9 LYKAEYAKSGRASCKKCKENIAKDSLRMAIMV----QSPMFDGKVPHWHHFSCF----WQ 60
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATLPS 136
+ S I GF SL +DQ+ V+ + S
Sbjct: 61 RAAAQSTSDIDGFSSLRWEDQEKVKKAIES 90
>gi|156400174|ref|XP_001638875.1| predicted protein [Nematostella vectensis]
gi|156225999|gb|EDO46812.1| predicted protein [Nematostella vectensis]
Length = 968
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 28/152 (18%)
Query: 3 FFDGKTPKWFHEECFWKKN-RPKALLDIHNVTSLRHQDQEMIKSKILGNI---------- 51
FF K P WFH CF+KK +PK+L +I + LR DQE ++++ G
Sbjct: 1 FFPLKVPNWFHFSCFFKKQFKPKSLAEIAGIDGLRWDDQEKFRAQVYGGASDVPDTTAAA 60
Query: 52 -----------EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
EYAKS+RSTC+ C+ +I KGE+R++K+ G+ G +P+W+H+ CF
Sbjct: 61 TVSVEQPDLLAEYAKSSRSTCKHCDEQIVKGELRLAKVM----DGEKYGPVPKWHHVPCF 116
Query: 101 NAVRLDLEFSA--SGKQIPGFGSLEKKDQKIV 130
DL+ S + + GF L K DQK++
Sbjct: 117 LKAMPDLDISGILTAQHFTGFQKLGKDDQKLL 148
>gi|390980986|pdb|4AV1|A Chain A, Crystal Structure Of The Human Parp-1 Dna Binding Domain
In Complex With Dna
gi|390980987|pdb|4AV1|B Chain B, Crystal Structure Of The Human Parp-1 Dna Binding Domain
In Complex With Dna
gi|390980988|pdb|4AV1|C Chain C, Crystal Structure Of The Human Parp-1 Dna Binding Domain
In Complex With Dna
gi|390980989|pdb|4AV1|D Chain D, Crystal Structure Of The Human Parp-1 Dna Binding Domain
In Complex With Dna
Length = 223
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 82/163 (50%), Gaps = 27/163 (16%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 62 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQD 121
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ +G I WYH
Sbjct: 122 GIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEK-PQLGMIDRWYH 180
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL 137
CF R +L F S Q+ GF L +D++ ++ LP +
Sbjct: 181 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGV 223
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV 103
S L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 26 SDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKV 81
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 82 GHSIRHPDV--EVDGFSELRWDDQQKVKKT 109
>gi|395728946|ref|XP_002809428.2| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 1 [Pongo abelii]
Length = 972
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 87/172 (50%), Gaps = 28/172 (16%)
Query: 3 FFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK---------------- 44
FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 1 MFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQDGI 60
Query: 45 ----SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLS 98
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH
Sbjct: 61 GSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMLDPEKPQL-GMIDRWYHPG 119
Query: 99 CFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 120 CFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 171
>gi|73960817|ref|XP_547506.2| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 1 [Canis lupus
familiaris]
Length = 972
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 87/172 (50%), Gaps = 28/172 (16%)
Query: 3 FFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK---------------- 44
FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 1 MFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVTGKGQDGG 60
Query: 45 ----SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLS 98
K L + EYAKSNRSTC+GC KI KG+IR+SK D ++ ++ G I WYH +
Sbjct: 61 GGKTDKTLADFAAEYAKSNRSTCKGCLEKIEKGQIRLSKKMLDPEKPQL-GMIDRWYHPN 119
Query: 99 CFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q GFG L +D++ ++ LP + S+G K D +
Sbjct: 120 CFVKNREELGFRPEYSASQFKGFGLLTPEDKEALKKQLPGVKSEGKRKGDEV 171
>gi|338722759|ref|XP_001491507.3| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 1 [Equus
caballus]
Length = 972
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 28/172 (16%)
Query: 3 FFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK---------------- 44
FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 1 MFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQGGS 60
Query: 45 ----SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLS 98
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I WYH +
Sbjct: 61 GSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQL-GMIDRWYHPN 119
Query: 99 CFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
CF R +L F S Q+ GF L +D++ ++ LP + ++G K D +
Sbjct: 120 CFVKNREELGFRPEYSASQLKGFSLLSPEDKEALKKQLPGVKTEGKRKGDEV 171
>gi|338722761|ref|XP_003364607.1| PREDICTED: poly [ADP-ribose] polymerase 1 isoform 2 [Equus
caballus]
Length = 979
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 88/179 (49%), Gaps = 35/179 (19%)
Query: 3 FFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK---------------- 44
FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 1 MFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKKTAEAGGRTDVTEIFL 60
Query: 45 -----------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGI 91
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ ++ G I
Sbjct: 61 GKGQGGSGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQL-GMI 119
Query: 92 PEWYHLSCFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
WYH +CF R +L F S Q+ GF L +D++ ++ LP + ++G K D +
Sbjct: 120 DRWYHPNCFVKNREELGFRPEYSASQLKGFSLLSPEDKEALKKQLPGVKTEGKRKGDEV 178
>gi|432113949|gb|ELK36014.1| Poly [ADP-ribose] polymerase 1 [Myotis davidii]
Length = 1471
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 27/165 (16%)
Query: 3 FFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK---------------- 44
FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 1 MFDGKVPHWYHFSCFWKVGHSIWQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQGGA 60
Query: 45 ----SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLS 98
K LG+ EYAKSNRSTC+GC +I KG++R+SK D ++ ++ G I WYH
Sbjct: 61 GGKPEKTLGDFAAEYAKSNRSTCKGCLERIDKGQVRLSKKMLDPEKPQL-GMIDRWYHPE 119
Query: 99 CFNAVRLDLEFSA--SGKQIPGFGSLEKKDQKIVEATLPSLSDGV 141
CF R +L F S + GF L +D++ +E LP + V
Sbjct: 120 CFVEHREELGFRPEYSASLLKGFSLLAPEDKEALEKQLPGVKSEV 164
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 17/146 (11%)
Query: 6 GKTPKWFHEECFWKKN-----RPKALLDI-HNVTSLRHQDQEMIKSKILGNIEYAKSNRS 59
G +W+H ECF + RP+ + + L +D+E ++ ++ G KS
Sbjct: 110 GMIDRWYHPECFVEHREELGFRPEYSASLLKGFSLLAPEDKEALEKQLPG----VKSEV- 164
Query: 60 TCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA--SGKQIP 117
E G++R+SK D ++ ++ G I WYH CF R +L F S +
Sbjct: 165 ---WVEGPGEGGQVRLSKKMLDPEKPQL-GMIDRWYHPECFVEHREELGFRPEYSASLLK 220
Query: 118 GFGSLEKKDQKIVEATLPSLSDGVSK 143
GF L +D++ +E LP + V +
Sbjct: 221 GFSLLAPEDKEALEKQLPGVKSEVKR 246
>gi|296479253|tpg|DAA21368.1| TPA: poly [ADP-ribose] polymerase 1 [Bos taurus]
Length = 1016
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 85/170 (50%), Gaps = 38/170 (22%)
Query: 1 SPFFDGKTPKWFHEECFWKKN----RPKALLDIHNVTSLRHQDQEMIK--------SKIL 48
SP FDGK P W+H CFWK P +++ + LR DQ+ IK + +
Sbjct: 41 SPMFDGKIPHWYHLSCFWKVGFSIWHPD--VEVEGFSELRWDDQQTIKKMAETGGATDVS 98
Query: 49 GNIE-----------------YAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGI 91
G + YAKSNRSTC+ C KI KG++R+SK D+ ++ G +
Sbjct: 99 GKGQDGVGSKTEKTLIDFGAGYAKSNRSTCKSCMEKIDKGQVRLSKKVVYPDKPQL-GMV 157
Query: 92 PEWYHLSCFNAVRLDL----EFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
WYH CF R +L EFSAS Q+ GF L +DQ+ ++ LP++
Sbjct: 158 DCWYHPKCFVQKREELGFRPEFSAS--QLMGFSVLTAEDQETLKKQLPAI 205
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C+ I K IR++ M Q M G IP WYHLSCF V
Sbjct: 8 LYRVEYAKSGRASCKKCKESIPKDSIRMAFMV----QSPMFDGKIPHWYHLSCFWKVGFS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVE 131
+ ++ GF L DQ+ ++
Sbjct: 64 IWHPDV--EVEGFSELRWDDQQTIK 86
>gi|74193585|dbj|BAE22758.1| unnamed protein product [Mus musculus]
Length = 190
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 75/148 (50%), Gaps = 27/148 (18%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W+H CFWK + +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQD 100
Query: 45 ------SKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
K LG+ EYAKSNRS C+GC KI KG++R+SK D ++ + +G I WYH
Sbjct: 101 GSGGKAEKTLGDFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQ-LGMIDRWYH 159
Query: 97 LSCFNAVRLDLEFSA--SGKQIPGFGSL 122
+CF R +L F S Q+ GF L
Sbjct: 160 PTCFVKKRDELGFRPEYSASQLKGFSLL 187
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAV 103
S+ L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 5 SERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKV 60
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 61 GHSIR--QPDVEVDGFSELRWDDQQKVKKT 88
>gi|294953569|ref|XP_002787829.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239902853|gb|EER19625.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 1053
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 34/172 (19%)
Query: 1 SPFFDGKTPKWFHEECFWK-KNRPKALLDIHNVTSLRHQDQEMIKSKI------------ 47
SP FDGK P W+H +CFW+ ++ P ++ DI+ +SL+ DQE I+++I
Sbjct: 42 SPHFDGKAPTWYHAKCFWRGRSLPASISDIYGFSSLKFPDQEEIEARIGVMLATSSRGAS 101
Query: 48 ---------LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLS 98
++EYAKS+RS CRGC I +GE+R+ +W+H+
Sbjct: 102 SGSSSSSSIGLSVEYAKSSRSECRGCYKLIDRGELRLGIDGIKETGYGFNVEATDWHHVK 161
Query: 99 C------FNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKT 144
C F+A+RL +S Q+ G L+ D+ +++A + +GV+KT
Sbjct: 162 CFLQRGDFSAMRL-----SSVDQLRGISGLDPADRDVLQAAIDD-RNGVAKT 207
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAK+ RS CR C I +R+ +M G P WYH CF R A
Sbjct: 13 EYAKTGRSHCRACHTNIPDKALRLGRM---VQSPHFDGKAPTWYHAKCFWRGR---SLPA 66
Query: 112 SGKQIPGFGSLEKKDQKIVEATL 134
S I GF SL+ DQ+ +EA +
Sbjct: 67 SISDIYGFSSLKFPDQEEIEARI 89
>gi|426239553|ref|XP_004013685.1| PREDICTED: poly [ADP-ribose] polymerase 1 [Ovis aries]
Length = 1013
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 82/165 (49%), Gaps = 31/165 (18%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK-------------- 44
SP FDGK P W H CFWK +++ + LR DQ+ IK
Sbjct: 41 SPMFDGKIPHWHHLSCFWKVGHSIWHPDVEVEGFSELRWDDQQKIKKMAETGGATGKGQD 100
Query: 45 --------SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
+ I YAKSNRSTC+ C KI KG++R+SK D+ ++ G + WYH
Sbjct: 101 GVGSKTEKTLIDFGAGYAKSNRSTCKSCMEKIEKGQVRLSKKVVYPDKPQL-GMVDCWYH 159
Query: 97 LSCFNAVRLDL----EFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
+CF R +L EFSAS Q+ GF L +DQ+ ++ LP++
Sbjct: 160 PNCFVQKREELGFRPEFSAS--QLMGFSLLTAEDQETLKKQLPAI 202
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCF 100
L +EYAKS R++C+ C+ I K IR++ M Q M G IP W+HLSCF
Sbjct: 8 LYRVEYAKSGRASCKKCKESIPKDSIRMAFMV----QSPMFDGKIPHWHHLSCF 57
>gi|93003306|tpd|FAA00236.1| TPA: zinc finger protein [Ciona intestinalis]
Length = 565
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 22/151 (14%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
S FDGK P W H CF+ + RPK + +I +LR DQE I+++I
Sbjct: 61 SRHFDGKQPNWHHYTCFFGRCRPKFVDEISKFHNLRWDDQEKIRAQIERGGGGGPSKKSS 120
Query: 51 --------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102
++YA SNRSTC+ CE KI K EIR+S D ++ + +G I W+H+ CF
Sbjct: 121 KKTLQDFVVQYALSNRSTCKKCEEKIEKDEIRISHKEIDPEKPQ-VGLIDRWHHVGCFIK 179
Query: 103 VRLDLEF---SASGKQIPGFGSLEKKDQKIV 130
R DL + + + GF L+ +D+ +
Sbjct: 180 SRKDLGWIDGQFTSDMLKGFKGLDSEDRATI 210
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 15/87 (17%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKM----NYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
EYAKS+R++C+ C + I K +R++ M ++D Q P W+H +CF R
Sbjct: 32 EYAKSSRASCKLCMSHIEKDSLRIALMVQSRHFDGKQ-------PNWHHYTCFFG-RCRP 83
Query: 108 EFSASGKQIPGFGSLEKKDQKIVEATL 134
+F +I F +L DQ+ + A +
Sbjct: 84 KFV---DEISKFHNLRWDDQEKIRAQI 107
>gi|198412483|ref|XP_002122941.1| PREDICTED: Zn-finger (NAD(+) ADP-ribosyltransferase)-3, partial
[Ciona intestinalis]
Length = 567
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 22/151 (14%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
S FDGK P W H CF+ + RPK + +I +LR DQE I+++I
Sbjct: 63 SRHFDGKQPNWHHYTCFFGRCRPKFVDEISKFHNLRWDDQEKIRAQIERGGGGGPSKKSS 122
Query: 51 --------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102
++YA SNRSTC+ CE KI K EIR+S D ++ + +G I W+H+ CF
Sbjct: 123 KKTLQDFVVQYALSNRSTCKKCEEKIEKDEIRISHKEIDPEKPQ-VGLIDRWHHVGCFIK 181
Query: 103 VRLDLEF---SASGKQIPGFGSLEKKDQKIV 130
R DL + + + GF L+ +D+ +
Sbjct: 182 SRKDLGWIDGQFTSDMLKGFKGLDSEDRATI 212
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 15/87 (17%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKM----NYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
EYAKS+R++C+ C + I K +R++ M ++D Q P W+H +CF R
Sbjct: 34 EYAKSSRASCKLCMSHIEKDSLRIALMVQSRHFDGKQ-------PNWHHYTCFFG-RCRP 85
Query: 108 EFSASGKQIPGFGSLEKKDQKIVEATL 134
+F +I F +L DQ+ + A +
Sbjct: 86 KFV---DEISKFHNLRWDDQEKIRAQI 109
>gi|86438265|gb|AAI12502.1| PARP1 protein [Bos taurus]
Length = 232
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 85/170 (50%), Gaps = 38/170 (22%)
Query: 1 SPFFDGKTPKWFHEECFWKKN----RPKALLDIHNVTSLRHQDQEMIK--------SKIL 48
SP FDGK P W+H CFWK P +++ + LR DQ+ IK + +
Sbjct: 41 SPMFDGKIPHWYHLSCFWKVGFSIWHPD--VEVEGFSELRWDDQQTIKKMAETGGATDVS 98
Query: 49 GNIE-----------------YAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGI 91
G + YAKSNRSTC+ C KI KG++R+SK D+ ++ G +
Sbjct: 99 GKGQDGVGSKTEKTLIDFGAGYAKSNRSTCKSCMEKIDKGQVRLSKKVVYPDKPQL-GMV 157
Query: 92 PEWYHLSCFNAVRLDL----EFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
WYH CF R +L EFSAS Q+ GF L +DQ+ ++ LP++
Sbjct: 158 DCWYHPKCFVQKREELGFRPEFSAS--QLMGFSVLTAEDQETLKKQLPAI 205
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C+ I K IR++ M Q M G IP WYHLSCF V
Sbjct: 8 LYRVEYAKSGRASCKKCKESIPKDSIRMAFMV----QSPMFDGKIPHWYHLSCFWKVGFS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVE 131
+ ++ GF L DQ+ ++
Sbjct: 64 IWHPDV--EVEGFSELRWDDQQTIK 86
>gi|27807449|ref|NP_777176.1| poly [ADP-ribose] polymerase 1 [Bos taurus]
gi|130779|sp|P18493.2|PARP1_BOVIN RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=ADP-ribosyltransferase diphtheria
toxin-like 1; Short=ARTD1; AltName: Full=NAD(+)
ADP-ribosyltransferase 1; Short=ADPRT 1; AltName:
Full=Poly[ADP-ribose] synthase 1
gi|217582|dbj|BAA14114.1| poly(ADP-ribose) synthetase [Bos taurus]
Length = 1016
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 84/170 (49%), Gaps = 38/170 (22%)
Query: 1 SPFFDGKTPKWFHEECFWKKN----RPKALLDIHNVTSLRHQDQEMIK--------SKIL 48
SP FDGK P W+H CFWK P +++ + LR DQ+ IK + +
Sbjct: 41 SPMFDGKIPHWYHLSCFWKVGFSIWHPD--VEVEGFSELRWDDQQTIKKMAETGGRTDVS 98
Query: 49 GNIE-----------------YAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGI 91
G + YAKSNRSTC+ C KI KG++R+SK D+ ++ G +
Sbjct: 99 GKGQDGVGSKTEKTLIDFGAGYAKSNRSTCKSCMEKIDKGQVRLSKKVVYPDKPQL-GMV 157
Query: 92 PEWYHLSCFNAVRLDL----EFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
WYH CF R +L EFSA+ + GF L +DQ+ ++ LP++
Sbjct: 158 DCWYHPKCFVQKREELGFRPEFSAT--HLMGFSVLTAEDQETLKKQLPAI 205
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
L +EYAKS R++C+ C+ I K IR M + + G IP WYHLSCF V +
Sbjct: 8 LYRVEYAKSGRASCKKCKESIPKDSIR---MAFMVESPMFDGKIPHWYHLSCFWKVGFSI 64
Query: 108 EFSASGKQIPGFGSLEKKDQKIVE 131
++ GF L DQ+ ++
Sbjct: 65 WHPDV--EVEGFSELRWDDQQTIK 86
>gi|195998397|ref|XP_002109067.1| hypothetical protein TRIADDRAFT_19562 [Trichoplax adhaerens]
gi|190589843|gb|EDV29865.1| hypothetical protein TRIADDRAFT_19562 [Trichoplax adhaerens]
Length = 968
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKIL-------GNI-- 51
S FDGK P W+H CF+KKN + DI SLR DQE ++ I+ GN+
Sbjct: 41 SMHFDGKVPNWYHFSCFFKKNSACSEGDIGGFGSLRWDDQEKLRKNIVSGNSSTQGNVIH 100
Query: 52 ------EYAKSNRSTCRGCEAKIAKGEIRVS-KMNYDSD-QGKMIGGIPEWYHLSCFNAV 103
EYAKS+R +CR C I K ++R+ D D + M+ I WYH CF +
Sbjct: 101 FTGLKTEYAKSSRGSCRCCGEIIEKDDVRIGHDRPPDPDSRVAMLNFITYWYHPGCFQDI 160
Query: 104 RLDLEF--SASGKQIPGFGSLEKKDQK 128
R DL+ + + + F L+K DQK
Sbjct: 161 RSDLDIPDTVGVESLKDFKKLKKPDQK 187
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 17/103 (16%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIR----VSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
EYAKSNR+ C+ C + I K +R V M++D G +P WYH SCF
Sbjct: 12 EYAKSNRAACKLCRSNIGKDTLRLAVMVQSMHFD-------GKVPNWYHFSCF----FKK 60
Query: 108 EFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHF 150
+ S I GFGSL DQ+ + + +S S + HF
Sbjct: 61 NSACSEGDIGGFGSLRWDDQEKLRKNI--VSGNSSTQGNVIHF 101
>gi|390334186|ref|XP_001177436.2| PREDICTED: poly [ADP-ribose] polymerase 1-like [Strongylocentrotus
purpuratus]
Length = 988
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 34/164 (20%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
SP FDGK P WFH CF+KKN+P++ DI SLR DQ+ IK + G
Sbjct: 10 SPVFDGKIPNWFHYHCFFKKNKPESQADIGGFPSLRWDDQQRIKETLSGKETGGALKSAD 69
Query: 51 ---------------IEYAKSNRSTCR--GCEAKIAKGEIRVSKMNYDSDQGKMIGGIPE 93
+ YA S R+ C GC KIA +R++ + ++ G P
Sbjct: 70 PDAEVDTITTLAQFIVGYASSGRAQCHGSGCSEKIAMKTVRIALLK-PMEEHLDYGPTPC 128
Query: 94 WYHLSCF-NAVRLD---LEFSASGK--QIPGFGSLEKKDQKIVE 131
WYH+ CF NA + E+ A+GK + F L+ D+K++E
Sbjct: 129 WYHVDCFVNAKHKENDYTEWPANGKASMLTDFNLLKDTDKKMLE 172
>gi|326427718|gb|EGD73288.1| hypothetical protein PTSG_05004 [Salpingoeca sp. ATCC 50818]
Length = 1057
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 4 FDGKTPKWFHEECFWKK-NRPKALLDIHNVTSLRHQDQEMIKSKILG------------- 49
FDG P ++H CF+K +RP + DI LR +DQ+ IK K+
Sbjct: 24 FDGLQPNYYHFSCFFKTGSRPSSTTDIEGFELLRLEDQKKIKDKLAKAAAGGSGDASSDN 83
Query: 50 ---NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
+EYAKS+R+ CR CE KI KGE+R+ + + G +P WYH CF
Sbjct: 84 ADLTMEYAKSSRAACRKCEEKINKGELRLGVLMDPPAEASFRGKVPWWYHRRCF 137
>gi|168033918|ref|XP_001769461.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679381|gb|EDQ65830.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 989
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 22/154 (14%)
Query: 4 FDGKTPKWFHEECFWKKNRP-KALLDIHNVTSLRHQDQE----MIKSKILG--------- 49
FDG W H C +KK + D+ +LR +DQ+ I++K G
Sbjct: 45 FDGMMAYWHHAGCIFKKKKQIHDWNDVEGADTLRWEDQQNLRKFIEAKTKGVNEDGDESS 104
Query: 50 ---NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLD 106
IE AKS+RSTC+ C KI KG++R+S M +D G+ G +P+W H CF ++
Sbjct: 105 GEYAIENAKSSRSTCKSCNEKIDKGQVRISTM-VAADGGRFRGKVPQWRHAKCFLSMG-- 161
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDG 140
FS +PG+ +L +DQ V+ TL S G
Sbjct: 162 -HFSGPLASLPGWDTLTSEDQAQVQ-TLAKPSAG 193
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
EYAKS R++CR C + IAK R++KM + + G + W+H C
Sbjct: 13 EYAKSGRASCRTCSSPIAKDAFRLAKMVQST---QFDGMMAYWHHAGCI 58
>gi|357110984|ref|XP_003557295.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 1
[Brachypodium distachyon]
Length = 975
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 32/147 (21%)
Query: 1 SPFFDGKTPKWFHEECFW-KKNRPKALLDIHNVTSLRHQDQEMIKSKILGN--------- 50
S FDG P W H C KKN+ K++ D+ + +LR DQE I++ + GN
Sbjct: 40 STQFDGFMPLWNHASCIISKKNQIKSVDDVEGIDALRWDDQEKIRNYV-GNSSATASSKA 98
Query: 51 -------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAV 103
IE A+S R++CR C KIAKG +RVS K+ G WYH+SCF
Sbjct: 99 AISDKCTIEVAQSARASCRHCSEKIAKGNVRVS--------AKVEG--QGWYHVSCF--- 145
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIV 130
L++ +A+ ++IPG+ +L +D+ +
Sbjct: 146 -LEMSPTATVEKIPGWEALSHEDKGAI 171
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EYAKS RS+C+ C++ I K +R+ KM + + G +P W H SC + + ++
Sbjct: 10 VEYAKSGRSSCKSCKSPIGKDALRLGKMVQST---QFDGFMPLWNHASCIISKKNQIK-- 64
Query: 111 ASGKQIPGFGSLEKKDQKIV 130
S + G +L DQ+ +
Sbjct: 65 -SVDDVEGIDALRWDDQEKI 83
>gi|321159579|pdb|2L31|A Chain A, Human Parp-1 Zinc Finger 2
Length = 112
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 10/109 (9%)
Query: 46 KILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAV 103
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ +G I WYH CF
Sbjct: 6 KTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEK-PQLGMIDRWYHPGCFVKN 64
Query: 104 RLDL----EFSASGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
R +L E+SAS Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 65 REELGFRPEYSAS--QLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 111
>gi|159163914|pdb|2CS2|A Chain A, Solution Structure Of The Second Zn-Finger Domain Of
Poly(Adp-Ribose) Polymerase-1
Length = 134
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 10/109 (9%)
Query: 46 KILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAV 103
K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ +G I WYH CF
Sbjct: 13 KTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEK-PQLGMIDRWYHPGCFVKN 71
Query: 104 RLDL----EFSASGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
R +L E+SAS Q+ GF L +D++ ++ LP + S+G K D +
Sbjct: 72 REELGFRPEYSAS--QLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV 118
>gi|428174146|gb|EKX43044.1| PARP1 poly polymerase [Guillardia theta CCMP2712]
Length = 989
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 32/160 (20%)
Query: 1 SPFFDGKTPKWFHEECFW--KKNRPKALLDIHNVTSLRHQDQEMIKSKILGN-------- 50
SP FDG P WFH +CF+ K +P+ + DI ++ L +DQ+ IK + GN
Sbjct: 41 SPSFDGWVPMWFHVDCFFGGKGAKPE-VSDIAGMSELSFEDQKKIKDLVAGNAVASGGSK 99
Query: 51 --------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
+E AKS+RS CRGCE+KI G +R+ ++ D+ I P+W+H
Sbjct: 100 PADADDEGNIGDYKVEIAKSSRSECRGCESKIEAGNLRMGRIEA-MDRRPFI-PTPKWHH 157
Query: 97 LSCF--NAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATL 134
L C + DL+ S + + GF L+ Q +V +
Sbjct: 158 LDCLFKDGKPEDLK---SSEDVIGFSLLDSDHQAMVREKM 194
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 24/89 (26%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKM----NYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
EYAKS R++CR C+ I K +R+ K ++D G +P W+H+ CF
Sbjct: 12 EYAKSGRASCRKCKNNIGKDVLRMGKYVQSPSFD-------GWVPMWFHVDCF------- 57
Query: 108 EFSASGKQ-----IPGFGSLEKKDQKIVE 131
F G + I G L +DQK ++
Sbjct: 58 -FGGKGAKPEVSDIAGMSELSFEDQKKIK 85
>gi|255560005|ref|XP_002521021.1| poly [ADP-ribose] polymerase, putative [Ricinus communis]
gi|223539858|gb|EEF41438.1| poly [ADP-ribose] polymerase, putative [Ricinus communis]
Length = 982
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 28/150 (18%)
Query: 4 FDGKTPKWFHEECFWKKNRP-KALLDIHNVTSLRHQDQEMIKSKILGN------------ 50
FDG P W HE C KK + K++ D+ + SLR +DQ+ I+ + G
Sbjct: 43 FDGFMPMWNHESCVLKKAKQIKSIDDVEGIDSLRWEDQQKIRKCVEGGGIATQDANANAL 102
Query: 51 ------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVR 104
IE ++++R+TCR C KI KG++R+S D + K + W+H CF
Sbjct: 103 NVMEYGIEVSQTSRATCRRCSQKILKGQVRISS-KPDEPRAKALA----WHHADCF---- 153
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATL 134
+DL S +++ G+ SL DQ+ V A +
Sbjct: 154 IDLHPSVQVEKMSGWESLPPSDQEAVRALI 183
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS RS+C+ C+ I K ++R+ KM + + G +P W H SC V +
Sbjct: 11 EYAKSGRSSCKTCKKPIDKEKLRLGKMVQAT---QFDGFMPMWNHESC---VLKKAKQIK 64
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLY 156
S + G SL +DQ+ + + G++ DA ++ L + Y
Sbjct: 65 SIDDVEGIDSLRWEDQQKIRKCVE--GGGIATQDANANALNVMEY 107
>gi|393910337|gb|EJD75827.1| WGR domain-containing protein [Loa loa]
Length = 871
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 68/149 (45%), Gaps = 33/149 (22%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLD--IHNVTSLRHQDQEMIKSKILGN-------- 50
S FFDG WFH CFWKK +P + + I + L+ DQE I+ KI N
Sbjct: 42 SHFFDGLQDNWFHFTCFWKKVKPDDVSEASIRGMELLKWSDQEQIRKKINENQAGTSNVR 101
Query: 51 -------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAV 103
EYA + RS C C+ I K +R +G WYH++CF +
Sbjct: 102 EISVMLISEYAVTGRSKCLNCKGNIKKNTLR-------------LGMKSAWYHVNCFEKI 148
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEA 132
+++ ++I GF +L K DQ I++
Sbjct: 149 E---PYTSCAEKIVGFQNLSKSDQDILKT 174
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPE-WYHLSCF-NAVRLDLEF 109
EYAKSNR++C+GC I++ +R+S G+ + W+H +CF V+ D
Sbjct: 13 EYAKSNRASCKGCHGLISQDSLRMSL----RKPSHFFDGLQDNWFHFTCFWKKVKPD--- 65
Query: 110 SASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLL 152
S I G L+ DQ+ + + G S IS L+
Sbjct: 66 DVSEASIRGMELLKWSDQEQIRKKINENQAGTSNVREISVMLI 108
>gi|317455339|pdb|3ODC|A Chain A, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna
gi|317455340|pdb|3ODC|B Chain B, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna
gi|317455345|pdb|3ODE|A Chain A, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna
gi|317455346|pdb|3ODE|B Chain B, Human Parp-1 Zinc Finger 2 (Zn2) Bound To Dna
Length = 111
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 66/107 (61%), Gaps = 10/107 (9%)
Query: 42 MIKSKILGNI--EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC 99
M K LG+ EYAKSNRSTC+GC KI KG++R+SK D ++ + +G I WYH C
Sbjct: 1 MKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQ-LGMIDRWYHPGC 59
Query: 100 FNAVRLDL----EFSASGKQIPGFGSLEKKDQKIVEATLPSL-SDGV 141
F R +L E+SAS Q+ GF L +D++ ++ LP + S+G+
Sbjct: 60 FVKNREELGFRPEYSAS--QLKGFSLLATEDKEALKKQLPGVKSEGL 104
>gi|312072203|ref|XP_003138958.1| hypothetical protein LOAG_03373 [Loa loa]
Length = 513
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 76/179 (42%), Gaps = 45/179 (25%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLD--IHNVTSLRHQDQEMIKSKILGN-------- 50
S FFDG WFH CFWKK +P + + I + L+ DQE I+ KI N
Sbjct: 42 SHFFDGLQDNWFHFTCFWKKVKPDDVSEASIRGMELLKWSDQEQIRKKINENQAGTSNVR 101
Query: 51 -------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAV 103
EYA + RS C C+ I K +R +G WYH++CF +
Sbjct: 102 EISVMLISEYAVTGRSKCLNCKGNIKKNTLR-------------LGMKSAWYHVNCFEKI 148
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKI------------VEATLPSLSDGVSKTDAISHF 150
+++ ++I GF +L K DQ I ++ L ++D V+K I
Sbjct: 149 E---PYTSCAEKIVGFQNLSKSDQDILKTMFNKQAETSIKRKLTKINDNVAKKAKIEQI 204
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVS--KMNYDSDQGKMIGGIPEWYHLSCF-NAVRLDLE 108
EYAKSNR++C+GC I++ +R+S K ++ D G W+H +CF V+ D
Sbjct: 13 EYAKSNRASCKGCHGLISQDSLRMSLRKPSHFFD-----GLQDNWFHFTCFWKKVKPD-- 65
Query: 109 FSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLT 158
S I G L+ DQ+ + + G S IS L+ +T
Sbjct: 66 -DVSEASIRGMELLKWSDQEQIRKKINENQAGTSNVREISVMLISEYAVT 114
>gi|75216547|sp|Q9ZSV1.1|PARP1_MAIZE RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=NAD(+) ADP-ribosyltransferase 1;
Short=ADPRT-1; AltName: Full=Poly[ADP-ribose] synthase 1
gi|3928871|gb|AAC79704.1| poly(ADP)-ribose polymerase [Zea mays]
gi|414588861|tpg|DAA39432.1| TPA: poly [ADP-ribose] polymerase 1(NAD(+) ADP-ribosyltransferase
1) [Zea mays]
Length = 980
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 25/143 (17%)
Query: 4 FDGKTPKWFHEEC-FWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG------------- 49
FDG P W H C F KKN+ K++ D+ + +LR DQE I++ +
Sbjct: 43 FDGFMPMWNHARCIFSKKNQIKSVDDVEGIDALRWDDQEKIRNYVGSASAGTSSTAAPPE 102
Query: 50 --NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
IE A S R++CR C KI KG +R+S +S+ K GIP WYH +CF ++
Sbjct: 103 KCTIEIAPSARTSCRRCSEKITKGSVRLS-AKLESEGPK---GIP-WYHANCF----FEV 153
Query: 108 EFSASGKQIPGFGSLEKKDQKIV 130
SA+ ++ G+ +L +D++ +
Sbjct: 154 SPSATVEKFSGWDTLSDEDKRTM 176
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS R++C+ C + IAK ++R+ KM S + G +P W H C + + ++
Sbjct: 11 EYAKSGRASCKSCRSPIAKDQLRLGKMVQAS---QFDGFMPMWNHARCIFSKKNQIK--- 64
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDA 146
S + G +L DQ+ + + S S G S T A
Sbjct: 65 SVDDVEGIDALRWDDQEKIRNYVGSASAGTSSTAA 99
>gi|219887125|gb|ACL53937.1| unknown [Zea mays]
Length = 446
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 25/143 (17%)
Query: 4 FDGKTPKWFHEEC-FWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG------------- 49
FDG P W H C F KKN+ K++ D+ + +LR DQE I++ +
Sbjct: 43 FDGFMPMWNHARCIFSKKNQIKSVDDVEGIDALRWDDQEKIRNYVGSASAGTSSTAAPPE 102
Query: 50 --NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
IE A S R++CR C KI KG +R+S +S+ K GIP WYH +CF ++
Sbjct: 103 KCTIEIAPSARTSCRRCSEKITKGSVRLS-AKLESEGPK---GIP-WYHANCF----FEV 153
Query: 108 EFSASGKQIPGFGSLEKKDQKIV 130
SA+ ++ G+ +L +D++ +
Sbjct: 154 SPSATVEKFSGWDTLSDEDKRTM 176
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS R++C+ C + IAK ++R+ KM S + G +P W H C + + ++
Sbjct: 11 EYAKSGRASCKSCRSPIAKDQLRLGKMVQAS---QFDGFMPMWNHARCIFSKKNQIK--- 64
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
S + G +L DQ+ + + S S G S T A I + + + S
Sbjct: 65 SVDDVEGIDALRWDDQEKIRNYVGSASAGTSSTAAPPEKCTIEIAPSARTS 115
>gi|218199481|gb|EEC81908.1| hypothetical protein OsI_25738 [Oryza sativa Indica Group]
Length = 977
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 30/143 (20%)
Query: 4 FDGKTPKWFHEECFW-KKNRPKALLDIHNVTSLRHQDQEMIKSKILG------------- 49
FDG P W H C KKN+ K++ D+ + +LR DQE I++ +
Sbjct: 43 FDGFMPMWNHASCILSKKNQIKSVDDVEGIDTLRWDDQEKIRNYVGSAPATASSAAAISD 102
Query: 50 --NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
IE AKS R++CR C KI KG +RVS K+ G WYH SCF L++
Sbjct: 103 KCTIEVAKSARTSCRRCGEKITKGAVRVS--------SKLEG--QGWYHASCF----LEM 148
Query: 108 EFSASGKQIPGFGSLEKKDQKIV 130
+A+ + G+ L +D++ V
Sbjct: 149 SPAATVENFSGWEILSHEDKRAV 171
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS RS+C+ C + I K ++R+ KM + G +P W H SC + + ++
Sbjct: 11 EYAKSGRSSCKSCRSPIGKDQLRLGKM---VQATQFDGFMPMWNHASCILSKKNQIK--- 64
Query: 112 SGKQIPGFGSLEKKDQKIV 130
S + G +L DQ+ +
Sbjct: 65 SVDDVEGIDTLRWDDQEKI 83
>gi|115471709|ref|NP_001059453.1| Os07g0413700 [Oryza sativa Japonica Group]
gi|75139007|sp|Q7EYV7.1|PARP1_ORYSJ RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=NAD(+) ADP-ribosyltransferase 1;
Short=ADPRT-1; AltName: Full=Poly[ADP-ribose] synthase 1
gi|34394043|dbj|BAC84104.1| putative poly(ADP)-ribose polymerase [Oryza sativa Japonica Group]
gi|113610989|dbj|BAF21367.1| Os07g0413700 [Oryza sativa Japonica Group]
gi|222636887|gb|EEE67019.1| hypothetical protein OsJ_23951 [Oryza sativa Japonica Group]
Length = 977
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 30/143 (20%)
Query: 4 FDGKTPKWFHEECFW-KKNRPKALLDIHNVTSLRHQDQEMIKSKILG------------- 49
FDG P W H C KKN+ K++ D+ + +LR DQE I++ +
Sbjct: 43 FDGLMPMWNHASCILSKKNQIKSVDDVEGIDTLRWDDQEKIRNYVGSAPATASSAAAISD 102
Query: 50 --NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
IE AKS R++CR C KI KG +RVS K+ G WYH SCF L++
Sbjct: 103 KCTIEVAKSARTSCRRCGEKIKKGTVRVS--------SKLEG--QGWYHASCF----LEM 148
Query: 108 EFSASGKQIPGFGSLEKKDQKIV 130
+A+ + G+ L +D++ V
Sbjct: 149 SPAATVENFSGWEILSHEDKRAV 171
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS RS+C+ C + I K ++R+ KM + G +P W H SC + + ++
Sbjct: 11 EYAKSGRSSCKSCRSPIGKDQLRLGKM---VQATQFDGLMPMWNHASCILSKKNQIK--- 64
Query: 112 SGKQIPGFGSLEKKDQKIV 130
S + G +L DQ+ +
Sbjct: 65 SVDDVEGIDTLRWDDQEKI 83
>gi|324503896|gb|ADY41683.1| Poly(ADP-ribose) polymerase pme-1 [Ascaris suum]
Length = 884
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 71/166 (42%), Gaps = 35/166 (21%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKAL--LDIHNVTSLRHQDQEMIKSKILGN-------- 50
S FFDG WFH +CFW + + + I + L+ DQE I+ KI N
Sbjct: 47 SRFFDGLQDNWFHFDCFWNRIKKGDVNEASIRGIDLLKWDDQEKIRRKIADNEAGIGVRP 106
Query: 51 ----------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
+EYA+SNR C C+A I K ++ +G WYH+ CF
Sbjct: 107 EGASVAPTVKVEYARSNRGKCTQCKATIDKDCVK-------------LGIKSSWYHVDCF 153
Query: 101 NAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDA 146
+ A + I GF +++ D+K + S ++ KT+A
Sbjct: 154 KNAQPST--VAGAESISGFMDMDESDKKTLLKKFGSETEKKRKTEA 197
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPE-WYHLSCF 100
EYAKS R++C+GC+ IA G +R+S + G+ + W+H CF
Sbjct: 18 EYAKSGRASCKGCKDPIAMGSLRMSARQ----PSRFFDGLQDNWFHFDCF 63
>gi|242043768|ref|XP_002459755.1| hypothetical protein SORBIDRAFT_02g009900 [Sorghum bicolor]
gi|241923132|gb|EER96276.1| hypothetical protein SORBIDRAFT_02g009900 [Sorghum bicolor]
Length = 931
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 25/136 (18%)
Query: 11 WFHEEC-FWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG---------------NIEYA 54
W H C F KKN+ K++ D+ + +LR DQE I++ I IE A
Sbjct: 2 WNHARCIFSKKNQIKSVDDVEGIDALRWDDQEKIRNYIGSASAATSSTAAAPDKCTIEIA 61
Query: 55 KSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSASGK 114
S R++CR C KIAKG +R+S +S K GIP WYH +CF ++ SA+ +
Sbjct: 62 PSARTSCRRCSEKIAKGSVRLS-AKLESQGSK---GIP-WYHANCF----FEVSPSATVE 112
Query: 115 QIPGFGSLEKKDQKIV 130
+ G+ +L +D++ V
Sbjct: 113 KFSGWDTLSDEDKRTV 128
>gi|402585661|gb|EJW79600.1| hypothetical protein WUBG_09490 [Wuchereria bancrofti]
Length = 173
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 30/148 (20%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKAL--LDIHNVTSLRHQDQEMIKSKILGN-------- 50
S FFDG WFH CFWKK + K + I + L+ DQE I+ KI N
Sbjct: 42 SRFFDGLQDNWFHFTCFWKKIKQKDINEASIRGMELLKWSDQERIRKKIRENQAEASDVE 101
Query: 51 ----IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLD 106
EYA + RS C C+ I K +R +G WYH++CF ++
Sbjct: 102 LSIIAEYAITGRSKCVNCKENIEKNTLR-------------LGMKSAWYHVNCFVKIQ-- 146
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATL 134
+ + ++ GF L + DQ +++ ++
Sbjct: 147 -QSTNCAEKCFGFQDLSESDQDLLKKSV 173
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPE-WYHLSCF 100
EYAKSNR+ C+GC I++ +R+S + G+ + W+H +CF
Sbjct: 13 EYAKSNRAACKGCHGLISQDSLRMSLRK----PSRFFDGLQDNWFHFTCF 58
>gi|170593795|ref|XP_001901649.1| WGR domain containing protein [Brugia malayi]
gi|158590593|gb|EDP29208.1| WGR domain containing protein [Brugia malayi]
Length = 875
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 30/145 (20%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLD--IHNVTSLRHQDQEMIKSKILGN-------- 50
S FFDG WFH CFWKK + K + + I + L+ DQE I+ KI N
Sbjct: 42 SRFFDGLQDNWFHFTCFWKKIKQKDINEASIRGLELLKWNDQERIRKKISENQAGVSDVE 101
Query: 51 ----IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLD 106
EYA + RS C C+ I K +R +G WYH++CF ++ +
Sbjct: 102 LSIICEYAITGRSKCVNCKGNIEKNTLR-------------LGMKSAWYHVNCFVKIQQN 148
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVE 131
+ ++ GF L + DQ +++
Sbjct: 149 ---TNCAEKFFGFQDLSESDQDLLK 170
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPE-WYHLSCF 100
EYAKSNR+ C+GC I++ +R+S + G+ + W+H +CF
Sbjct: 13 EYAKSNRAACKGCHGLISQDSLRMSL----RKPSRFFDGLQDNWFHFTCF 58
>gi|297744119|emb|CBI37089.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 31/166 (18%)
Query: 4 FDGKTPKWFHEECFWKK-NRPKALLDIHNVTSLRHQDQEMIKSKILGN------------ 50
FDG P W H C KK N+ K+L D+ + LR D++MI+ +
Sbjct: 43 FDGFMPMWNHAGCILKKANQIKSLDDVEGIELLRWDDRQMIRKYVESGGPSKNTAKDVAS 102
Query: 51 ------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVR 104
IE ++++R+TC+ C KI KGE+R+S G+ G+ W+H +CF
Sbjct: 103 AVAECGIEVSQTSRATCKRCSQKIMKGEVRIS----SKPDGQGAKGLA-WHHANCF---- 153
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATL---PSLSDGVSKTDAI 147
L++ S +++ G+ L DQ+ V A + PS ++ +K I
Sbjct: 154 LEMSPSTLIEKLSGWDGLSSSDQETVCALIKKSPSAAEIGTKVKGI 199
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
EYAKS+RS+C+ C+ I K + R+ KM S + G +P W H C
Sbjct: 11 EYAKSSRSSCKTCKTPIDKEKFRLGKMVQAS---QFDGFMPMWNHAGCI 56
>gi|359480257|ref|XP_003632422.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 2 [Vitis
vinifera]
Length = 992
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 28/150 (18%)
Query: 4 FDGKTPKWFHEECFWKK-NRPKALLDIHNVTSLRHQDQEMIKSKILGN------------ 50
FDG P W H C KK N+ K+L D+ + LR D++MI+ +
Sbjct: 43 FDGFMPMWNHAGCILKKANQIKSLDDVEGIELLRWDDRQMIRKYVESGGPSKNTAKDVAS 102
Query: 51 ------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVR 104
IE ++++R+TC+ C KI KGE+R+S G+ G+ W+H +CF
Sbjct: 103 AVAECGIEVSQTSRATCKRCSQKIMKGEVRIS----SKPDGQGAKGLA-WHHANCF---- 153
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATL 134
L++ S +++ G+ L DQ+ V A +
Sbjct: 154 LEMSPSTLIEKLSGWDGLSSSDQETVCALI 183
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
EYAKS+RS+C+ C+ I K + R+ KM S + G +P W H C
Sbjct: 11 EYAKSSRSSCKTCKTPIDKEKFRLGKMVQAS---QFDGFMPMWNHAGCI 56
>gi|4432827|gb|AAD20677.1| putative poly (ADP-ribose) polymerase [Arabidopsis thaliana]
Length = 1009
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 42/185 (22%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP-KALLDIHNVTSLRHQDQEMIK--------------- 44
S FDG P W H C KK + K++ D+ + SLR +DQ+ I+
Sbjct: 40 STHFDGIMPMWNHASCILKKTKQIKSVDDVEGIESLRWEDQQKIRKYVESGAGSNTSTST 99
Query: 45 ----------SKILGNIEYAKSNRSTCRGCEAKIAKGEIRV-SKMNYDSDQGKMIGGIPE 93
+K+ IE ++++R+ CR C KI KGE+R+ SK ++G M
Sbjct: 100 GTSTSSTANNAKLEYGIEVSQTSRAGCRKCSEKILKGEVRIFSKPEGPGNKGLM------ 153
Query: 94 WYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQK----IVEATLPSLSDGVSKTDA-IS 148
W+H CF L++ S + + G+ S+ DQ+ +V+ LP+ G S D +
Sbjct: 154 WHHAKCF----LEMSSSTELESLSGWRSIPDSDQEALLPLVKKALPAAKTGKSLKDPDLQ 209
Query: 149 HFLLI 153
+F LI
Sbjct: 210 YFSLI 214
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS+RS+C+ C++ I K R+ K+ + G +P W H SC ++
Sbjct: 11 EYAKSSRSSCKTCKSVINKENFRLGKLVQST---HFDGIMPMWNHASCILKKTKQIK--- 64
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPS 136
S + G SL +DQ+ + + S
Sbjct: 65 SVDDVEGIESLRWEDQQKIRKYVES 89
>gi|225437838|ref|XP_002263185.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 1 [Vitis
vinifera]
Length = 984
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 28/150 (18%)
Query: 4 FDGKTPKWFHEECFWKK-NRPKALLDIHNVTSLRHQDQEMIKSKILGN------------ 50
FDG P W H C KK N+ K+L D+ + LR D++MI+ +
Sbjct: 43 FDGFMPMWNHAGCILKKANQIKSLDDVEGIELLRWDDRQMIRKYVESGGPSKNTAKDVAS 102
Query: 51 ------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVR 104
IE ++++R+TC+ C KI KGE+R+S G+ G+ W+H +CF
Sbjct: 103 AVAECGIEVSQTSRATCKRCSQKIMKGEVRIS----SKPDGQGAKGLA-WHHANCF---- 153
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATL 134
L++ S +++ G+ L DQ+ V A +
Sbjct: 154 LEMSPSTLIEKLSGWDGLSSSDQETVCALI 183
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
EYAKS+RS+C+ C+ I K + R+ KM S + G +P W H C
Sbjct: 11 EYAKSSRSSCKTCKTPIDKEKFRLGKMVQAS---QFDGFMPMWNHAGCI 56
>gi|224066273|ref|XP_002302058.1| predicted protein [Populus trichocarpa]
gi|222843784|gb|EEE81331.1| predicted protein [Populus trichocarpa]
Length = 996
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 35/157 (22%)
Query: 4 FDGKTPKWFHEECFWKK-NRPKALLDIHNVTSLRHQDQEMIKSKILG------------- 49
FDG P W H C KK N+ K + D+ + SLR +DQ+ I+ +
Sbjct: 43 FDGFMPMWNHASCILKKANQIKFIDDVEGIESLRWEDQQRIRKYVEEGGGGGDDGASGSG 102
Query: 50 ------------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHL 97
IE ++++R+TC+ C KI KGE+R+S G+ G+ W+H
Sbjct: 103 PPSAKAAKAMEYGIELSQTSRATCKSCSEKIMKGEVRIS----SKPDGQGPRGLA-WHHA 157
Query: 98 SCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATL 134
+CF +DL S ++ G+ S+ DQ +V + +
Sbjct: 158 NCF----MDLYPSVQVDKLSGWESIAAPDQAVVHSLV 190
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLDLEFS 110
EYAKS RS+C+ C++ I K +R+ KM Q K G +P W H SC ++F
Sbjct: 11 EYAKSARSSCKTCKSIIDKEILRLGKMV----QAKQFDGFMPMWNHASCILKKANQIKFI 66
Query: 111 ASGKQIPGFGSLEKKDQKIV 130
+ G SL +DQ+ +
Sbjct: 67 ---DDVEGIESLRWEDQQRI 83
>gi|340373081|ref|XP_003385071.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Amphimedon
queenslandica]
Length = 883
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 14/87 (16%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKM----NYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
EYAKSNRS+C+ C IAK +R+++M N+D+ IP WYH SCF ++ L
Sbjct: 11 EYAKSNRSSCKACRETIAKDSLRMARMVQAPNFDAK-------IPHWYHFSCFFGPKMKL 63
Query: 108 EFSASGKQIPGFGSLEKKDQKIVEATL 134
S QI G G L DQ+ ++A +
Sbjct: 64 ---VSVSQIGGMGGLRWDDQQKIQAKI 87
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 1 SPFFDGKTPKWFHEECFW-KKNRPKALLDIHNVTSLRHQDQEMIKSKI 47
+P FD K P W+H CF+ K + ++ I + LR DQ+ I++KI
Sbjct: 40 APNFDAKIPHWYHFSCFFGPKMKLVSVSQIGGMGGLRWDDQQKIQAKI 87
>gi|356572249|ref|XP_003554282.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Glycine max]
Length = 996
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 36/154 (23%)
Query: 4 FDGKTPKWFHEECFWKK-NRPKALLDIHNVTSLRHQDQEMIK------------------ 44
FDG P W H C KK N+ K + D+ N+ SLR +DQ+ I+
Sbjct: 45 FDGLVPMWNHAACVLKKANQIKLVEDVENLESLRWEDQQKIRKYIESGGGGGSSSGGGSA 104
Query: 45 ----SKILGN----IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
SK + + IE ++++R+TC+ C KI KGE+R+S + QG W+H
Sbjct: 105 AKSDSKTVKDTKCGIEVSQNSRATCKDCGQKIIKGEVRIS-----TKQGGQGAKGLAWHH 159
Query: 97 LSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIV 130
C +DL S ++ G+ +L DQ V
Sbjct: 160 AKCL----IDLSPSIEVDKLSGWNNLSSSDQSAV 189
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC 99
EYAKS RS+CR C++ IA +R+ KM + K G +P W H +C
Sbjct: 13 EYAKSGRSSCRTCKSPIASETLRLGKMVQST---KFDGLVPMWNHAAC 57
>gi|357110986|ref|XP_003557296.1| PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 2
[Brachypodium distachyon]
Length = 964
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 41/146 (28%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGN---------- 50
S FDG P W H ++ D+ + +LR DQE I++ + GN
Sbjct: 40 STQFDGFMPLWNH----------ASVDDVEGIDALRWDDQEKIRNYV-GNSSATASSKAA 88
Query: 51 ------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVR 104
IE A+S R++CR C KIAKG +RVS K+ G WYH+SCF
Sbjct: 89 ISDKCTIEVAQSARASCRHCSEKIAKGNVRVS--------AKVEG--QGWYHVSCF---- 134
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIV 130
L++ +A+ ++IPG+ +L +D+ +
Sbjct: 135 LEMSPTATVEKIPGWEALSHEDKGAI 160
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLD 106
+EYAKS RS+C+ C++ I K +R+ KM + + G +P W H S + +D
Sbjct: 10 VEYAKSGRSSCKSCKSPIGKDALRLGKMVQST---QFDGFMPLWNHASVDDVEGID 62
>gi|449468536|ref|XP_004151977.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Cucumis sativus]
gi|449496917|ref|XP_004160262.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Cucumis sativus]
Length = 980
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 24/153 (15%)
Query: 4 FDGKTPKWFHEECFWKKNRP-KALLDIHNVTSLRHQDQEMIK--------------SKIL 48
FDG P W H C KK + K++ D+ + SLR +DQ I+ + I
Sbjct: 43 FDGFMPMWNHAACILKKAKQIKSIDDVEGLDSLRWEDQLKIRQYVEDSVAAAAVVVTPIE 102
Query: 49 GNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
IE ++++R++C+ C+ KI KGE+R+S + GK G+ WYH +C+ ++
Sbjct: 103 YGIEVSQTSRASCKHCKQKIMKGEVRLSTVL----DGKGTKGLA-WYHANCY----MEQC 153
Query: 109 FSASGKQIPGFGSLEKKDQKIVEATLPSLSDGV 141
SA +++ G+ +L DQ + + S V
Sbjct: 154 PSAQVEKLAGWQNLPPSDQAAISTLVKKPSSAV 186
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
+EYAKS+RS+C+ C++ I K +R KM + G +P W H +C
Sbjct: 10 VEYAKSSRSSCKTCKSPIQKENLRFGKM---VQATQFDGFMPMWNHAACI 56
>gi|313229492|emb|CBY18306.1| unnamed protein product [Oikopleura dioica]
Length = 999
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 5 DGKTPKWFHEECFWKKNRPKAL----LD-IHNVTSLRHQDQEMIKS---KILG------- 49
DG P W H +CF+ K + L +D I SLR DQE +K KI G
Sbjct: 45 DGVDPNWAHFDCFFGKAKQWGLKTGEIDKIEGFHSLRLDDQERLKEATEKIGGPVTKGKG 104
Query: 50 ----------NIEYAKSNRSTCR--GCEA-KIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
I YA S R+ CR C+ KI K E+R+ D ++ + G IP W+H
Sbjct: 105 KSARTVLDDFEIGYAPSARAKCRREDCQTEKIEKDELRIGAKMVDPEKPHL-GPIPRWHH 163
Query: 97 LSCFNAVRLDL--EFSASGKQIPGFGSLEKKDQKIVEATL 134
+ CF VR ++ E S + I GF L+K Q V L
Sbjct: 164 VGCFKKVRNNVGWEDSYTADMISGFAGLDKDAQDQVRKLL 203
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF--NAVRLDLEF 109
EY+KSNR++C+ C++KI K +R+++M G P W H CF A + L+
Sbjct: 12 EYSKSNRASCKICKSKIDKDVVRMARMMKSRHHD---GVDPNWAHFDCFFGKAKQWGLK- 67
Query: 110 SASGKQIPGFGSLEKKDQ-KIVEAT 133
+ +I GF SL DQ ++ EAT
Sbjct: 68 TGEIDKIEGFHSLRLDDQERLKEAT 92
>gi|313241682|emb|CBY33906.1| unnamed protein product [Oikopleura dioica]
Length = 369
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 5 DGKTPKWFHEECFWKKNRPKAL----LD-IHNVTSLRHQDQEMIKS---KILG------- 49
DG P W H +CF+ K + L +D I SLR DQE +K KI G
Sbjct: 45 DGVDPNWAHFDCFFGKAKQWGLKTGEIDKIEGFHSLRLDDQERLKEATEKIGGPVTKGKG 104
Query: 50 ----------NIEYAKSNRSTCR--GCEA-KIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
I YA S R+ CR C+ KI K E+R+ D ++ +G IP W+H
Sbjct: 105 KSARTVLDDFEIGYAPSARAKCRREDCQTEKIEKDELRIGAKMVDPEK-PHLGPIPRWHH 163
Query: 97 LSCFNAVRLDL--EFSASGKQIPGFGSLEKKDQKIVEATL 134
+ CF VR ++ E S + I GF L+K Q V L
Sbjct: 164 VGCFKKVRNNVGWEDSYTADMISGFAGLDKDAQDQVRKLL 203
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF--NAVRLDLEF 109
EY+KSNR++C+ C++KI K +R+++M G P W H CF A + L+
Sbjct: 12 EYSKSNRASCKICKSKIDKDVVRMARMMKSRHHD---GVDPNWAHFDCFFGKAKQWGLK- 67
Query: 110 SASGKQIPGFGSLEKKDQ-KIVEAT 133
+ +I GF SL DQ ++ EAT
Sbjct: 68 TGEIDKIEGFHSLRLDDQERLKEAT 92
>gi|30684908|ref|NP_850165.1| Poly [ADP-ribose] polymerase 1 [Arabidopsis thaliana]
gi|73921622|sp|Q9ZP54.2|PARP1_ARATH RecName: Full=Poly [ADP-ribose] polymerase 1; Short=PARP-1;
AltName: Full=NAD(+) ADP-ribosyltransferase 1;
Short=ADPRT-1; AltName: Full=Poly[ADP-ribose] synthase 1
gi|4038491|emb|CAA10482.1| poly(ADP-ribose) polymerase [Arabidopsis thaliana]
gi|20259524|gb|AAM13882.1| putative poly (ADP-ribose) polymerase [Arabidopsis thaliana]
gi|23297589|gb|AAN12901.1| putative poly(ADP-ribose) polymerase [Arabidopsis thaliana]
gi|330253433|gb|AEC08527.1| Poly [ADP-ribose] polymerase 1 [Arabidopsis thaliana]
Length = 983
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 40/162 (24%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP-KALLDIHNVTSLRHQDQEMIK--------------- 44
S FDG P W H C KK + K++ D+ + SLR +DQ+ I+
Sbjct: 40 STHFDGIMPMWNHASCILKKTKQIKSVDDVEGIESLRWEDQQKIRKYVESGAGSNTSTST 99
Query: 45 ----------SKILGNIEYAKSNRSTCRGCEAKIAKGEIRV-SKMNYDSDQGKMIGGIPE 93
+K+ IE ++++R+ CR C KI KGE+R+ SK ++G M
Sbjct: 100 GTSTSSTANNAKLEYGIEVSQTSRAGCRKCSEKILKGEVRIFSKPEGPGNKGLM------ 153
Query: 94 WYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLP 135
W+H CF L++ S + + G+ S+ DQ EA LP
Sbjct: 154 WHHAKCF----LEMSSSTELESLSGWRSIPDSDQ---EALLP 188
Score = 38.5 bits (88), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS+RS+C+ C++ I K R+ K+ + G +P W H SC ++
Sbjct: 11 EYAKSSRSSCKTCKSVINKENFRLGKLVQST---HFDGIMPMWNHASCILKKTKQIK--- 64
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPS 136
S + G SL +DQ+ + + S
Sbjct: 65 SVDDVEGIESLRWEDQQKIRKYVES 89
>gi|356504997|ref|XP_003521279.1| PREDICTED: poly [ADP-ribose] polymerase 1-like [Glycine max]
Length = 997
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 36/154 (23%)
Query: 4 FDGKTPKWFHEECFWKK-NRPKALLDIHNVTSLRHQDQEMIK------------------ 44
FDG P W H C KK N+ K L D+ N+ SLR +DQ+ I+
Sbjct: 45 FDGLMPMWNHAACILKKANQIKLLEDVENLESLRWEDQQKIRKYIESGGGGGGGSSSGSA 104
Query: 45 ----SKILGN----IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYH 96
SK + + IE ++++R+TC+ C KI KGE+R+S G+ G+ W+H
Sbjct: 105 AKSDSKTVKDTKCGIEVSQNSRATCKDCGQKIIKGEVRIST----KPGGQGAKGLA-WHH 159
Query: 97 LSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIV 130
C ++L S ++ G+ +L DQ V
Sbjct: 160 AKCL----MELSPSIDVYKLSGWNNLSSSDQSAV 189
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
EYAKS RS+CR C++ IA +R+ KM + K G +P W H +C
Sbjct: 13 EYAKSGRSSCRTCKSPIASETLRLGKMVQST---KFDGLMPMWNHAACI 58
>gi|147775930|emb|CAN75718.1| hypothetical protein VITISV_037618 [Vitis vinifera]
Length = 1016
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 28/142 (19%)
Query: 4 FDGKTPKWFHEECFWKK-NRPKALLDIHNVTSLRHQDQEMIKSKILGN------------ 50
FDG P W H C KK N+ K+L D+ + LR D++MI+ +
Sbjct: 43 FDGFMPMWNHAGCILKKANQIKSLDDVEGIELLRWDDRQMIRKYVESGGPSKNTAKDVAS 102
Query: 51 ------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVR 104
IE ++++R+TC+ C KI KGE+R+S G+ G+ W+H +CF
Sbjct: 103 AVAECGIEVSQTSRATCKRCSQKIMKGEVRIS----SKPDGQGAKGLA-WHHANCF---- 153
Query: 105 LDLEFSASGKQIPGFGSLEKKD 126
L++ S +++ G+ L D
Sbjct: 154 LEMSPSTLIEKLSGWDGLSSSD 175
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
EYAKS+RS+C+ C+ I K + R+ KM S + G +P W H C
Sbjct: 11 EYAKSSRSSCKTCKTPIDKEKFRLGKMVQAS---QFDGFMPMWNHAGCI 56
>gi|297826573|ref|XP_002881169.1| hypothetical protein ARALYDRAFT_902162 [Arabidopsis lyrata subsp.
lyrata]
gi|297327008|gb|EFH57428.1| hypothetical protein ARALYDRAFT_902162 [Arabidopsis lyrata subsp.
lyrata]
Length = 979
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 33/153 (21%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP-KALLDIHNVTSLRHQDQEMIK--------------- 44
S FDG P W H C K + K++ D+ + SLR +DQ+ I+
Sbjct: 40 STHFDGIMPMWNHASCILNKTKQIKSVDDVEGIESLRWEDQQKIRKYVESGAGNSTSTSK 99
Query: 45 ------SKILGNIEYAKSNRSTCRGCEAKIAKGEIRV-SKMNYDSDQGKMIGGIPEWYHL 97
+K+ IE ++++R+ CR C KI KGE+R+ SK ++G M W+H
Sbjct: 100 SSTANNAKLEYGIEVSQTSRAGCRKCSEKILKGEVRIFSKPEGPGNKGLM------WHHA 153
Query: 98 SCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIV 130
CF L++ S + + G+ S+ DQ+++
Sbjct: 154 KCF----LEMSSSTELESLSGWRSIPDADQEVL 182
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
EYAKS+RS+C+ C++ I K R+ K+ + G +P W H SC
Sbjct: 11 EYAKSSRSSCKTCKSVINKENFRLGKLVQST---HFDGIMPMWNHASCI 56
>gi|256072936|ref|XP_002572789.1| poly [ADP-ribose] polymerase [Schistosoma mansoni]
Length = 977
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 13/140 (9%)
Query: 1 SPFFDGKTPKWFHEECFWK-KNRPKALLDIHNVTSLRHQDQEMIKSKI---LGNIEYAKS 56
+P FDGK P+WFH +CFWK K ++ +I N S+R +DQE I++ I +G S
Sbjct: 39 APNFDGKIPRWFHYDCFWKSKAHVESTAEIKNFDSIRWEDQEKIRAAINSEIGXXXXIGS 98
Query: 57 NRST-CRGCEAKIAKGEIRVSK----MNYDSDQGKMIGGIPEWY-HLSCFNAVRLDLEFS 110
+ T R K++ G++ + +NY+ G P + HLSCF E
Sbjct: 99 LKPTKTRKFTVKLSDGDLTCTHCQNPLNYERHTVLGSGKKPTFMCHLSCFLKSN---ECP 155
Query: 111 ASGKQIPGFGSLEKKDQKIV 130
Q+ GF L DQ V
Sbjct: 156 EDISQLVGFNKLSTVDQDAV 175
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKM----NYDSDQGKMIGGIPEWYHLSCFNAVRL 105
+++YAKSNRS C C+ +I + +R++ + N+D G IP W+H CF +
Sbjct: 8 DVDYAKSNRSKCNKCKVEINQNSLRIAILVQAPNFD-------GKIPRWFHYDCFWKSKA 60
Query: 106 DLEFSASGKQIPGFGSLEKKDQKIVEATLPS 136
+E +A +I F S+ +DQ+ + A + S
Sbjct: 61 HVESTA---EIKNFDSIRWEDQEKIRAAINS 88
>gi|76156440|gb|AAX27650.2| SJCHGC03951 protein [Schistosoma japonicum]
Length = 165
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 57/97 (58%), Gaps = 17/97 (17%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKM----NYDSDQGKMIGGIPEWYHLSCFNAVRL 105
+++YAKSNRS C C+ +I + +R++++ N+D G IP W+H CF A ++
Sbjct: 8 DVDYAKSNRSKCNKCKIEIDQNSLRIARLVQSPNFD-------GKIPRWFHYKCFWASKI 60
Query: 106 DLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVS 142
+E S +I F S+ +DQ+ + A ++SDGV+
Sbjct: 61 LIE---STSEIKNFDSIRWEDQEKIRA---AISDGVT 91
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 1 SPFFDGKTPKWFHEECFW-KKNRPKALLDIHNVTSLRHQDQEMIKSKILGNIEYAKSNRS 59
SP FDGK P+WFH +CFW K ++ +I N S+R +DQE I++ I + K S
Sbjct: 39 SPNFDGKIPRWFHYKCFWASKILIESTSEIKNFDSIRWEDQEKIRAAISDGVTSLKPTTS 98
>gi|294950813|ref|XP_002786786.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239901140|gb|EER18582.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 981
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 38/147 (25%)
Query: 1 SPFFDGKTPKWFHEECFWK-KNRPKALLDIHNVTSLRHQDQEMIKSKILGNI--EYAKSN 57
SP FDGK P W+H +CFW+ ++ P ++ DI+ +SL+ DQE I+++ I ++ +
Sbjct: 42 SPHFDGKAPTWYHAKCFWRGRSLPASISDIYGFSSLKFPDQEEIEARPRCFIGKQFFILD 101
Query: 58 RSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSASGKQIP 117
R+ C G + +W+H+ CF Q+
Sbjct: 102 RTKCYGFNVEAT-----------------------DWHHVKCFLQ-----------HQLR 127
Query: 118 GFGSLEKKDQKIVEATLPSLSDGVSKT 144
G L+ D+++++A + +GV+KT
Sbjct: 128 GINGLDPADRQVLQAAIDD-RNGVAKT 153
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAK+ RS CR C I +R+ +M G P WYH CF R A
Sbjct: 13 EYAKTGRSHCRACHTNIPDKALRLGRM---VQSPHFDGKAPTWYHAKCFWRGR---SLPA 66
Query: 112 SGKQIPGFGSLEKKDQKIVEA 132
S I GF SL+ DQ+ +EA
Sbjct: 67 SISDIYGFSSLKFPDQEEIEA 87
>gi|405964909|gb|EKC30348.1| Poly [ADP-ribose] polymerase 1 [Crassostrea gigas]
Length = 326
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 39/159 (24%)
Query: 11 WFHEECFWKKNRPKALLD--------IHNVTSLRHQDQEMIKSKILGNI----------- 51
W+H +C WK++ A +D + L+++DQ + S + N
Sbjct: 150 WYHYDCVWKESVLLAPIDTSQSLEETVDGFEKLKNEDQTKLSSDLKKNCKAAAEKEPPLP 209
Query: 52 -----EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLD 106
+YAKS++S C+ C KIAK +RV GK G WYH+ C +
Sbjct: 210 PKMAADYAKSDKSECKSCATKIAKNALRVGFT------GKANFGAVAWYHVDCLK--KCP 261
Query: 107 LEFSASGKQ-------IPGFGSLEKKDQKIVEATLPSLS 138
E+S K + GF L K DQK VE + +L+
Sbjct: 262 QEYSKGIKADKPLEELVDGFDKLNKDDQKKVEKEVKALA 300
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
EYAKS ++ C+GC I KGE+R+ + GK G WYH C
Sbjct: 7 TAEYAKSGKAGCKGCGKSIDKGELRIGYV------GKANFGATAWYHYDCL 51
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 38/156 (24%)
Query: 11 WFHEECFWKKNRPKALLD--------IHNVTSLRHQ--------------------DQEM 42
W+H +C W +D + N SL+ + +
Sbjct: 45 WYHYDCLWADTDSLKSVDASKSAKVLVQNYDSLKGEDKKKLDKDLPKFCKEASTKASKAE 104
Query: 43 IKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF-- 100
K K EYA S +S C+GC I K +RV GK G WYH C
Sbjct: 105 PKPKSDLAAEYAPSAKSNCKGCSKPIGKSTLRV------GFPGKANFGATAWYHYDCVWK 158
Query: 101 -NAVRLDLEFSASGKQ-IPGFGSLEKKDQKIVEATL 134
+ + ++ S S ++ + GF L+ +DQ + + L
Sbjct: 159 ESVLLAPIDTSQSLEETVDGFEKLKNEDQTKLSSDL 194
>gi|414588860|tpg|DAA39431.1| TPA: hypothetical protein ZEAMMB73_927988 [Zea mays]
Length = 969
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 34/142 (23%)
Query: 4 FDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG-------------- 49
FDG P W H ++ D+ + +LR DQE I++ +
Sbjct: 43 FDGFMPMWNH----------ASVDDVEGIDALRWDDQEKIRNYVGSASAGTSSTAAPPEK 92
Query: 50 -NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
IE A S R++CR C KI KG +R+S +S+ K GIP WYH +CF ++
Sbjct: 93 CTIEIAPSARTSCRRCSEKITKGSVRLS-AKLESEGPK---GIP-WYHANCF----FEVS 143
Query: 109 FSASGKQIPGFGSLEKKDQKIV 130
SA+ ++ G+ +L +D++ +
Sbjct: 144 PSATVEKFSGWDTLSDEDKRTM 165
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS R++C+ C + IAK ++R+ KM S + G +P W H A
Sbjct: 11 EYAKSGRASCKSCRSPIAKDQLRLGKMVQAS---QFDGFMPMWNH--------------A 53
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDA 146
S + G +L DQ+ + + S S G S T A
Sbjct: 54 SVDDVEGIDALRWDDQEKIRNYVGSASAGTSSTAA 88
>gi|2632129|emb|CAA10889.1| poly(ADP-ribose) polymerase [Zea mays]
Length = 969
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 34/142 (23%)
Query: 4 FDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG-------------- 49
FDG P W H ++ D+ + +LR DQE I++ +
Sbjct: 43 FDGFMPMWNH----------ASVDDVEGIDALRWDDQEKIRNYVGSASAGTSSTAAPPEK 92
Query: 50 -NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
IE A S R++CR C KI KG +R+S +S+ K GIP WYH +CF ++
Sbjct: 93 CTIEIAPSARTSCRRCSEKITKGSVRLS-AKLESEGPK---GIP-WYHANCF----FEVS 143
Query: 109 FSASGKQIPGFGSLEKKDQKIV 130
SA+ ++ G+ +L +D++ +
Sbjct: 144 PSATVEKFSGWDTLSDEDKRTM 165
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS R++C+ C + IAK ++R+ KM S + G +P W H A
Sbjct: 11 EYAKSGRASCKSCRSPIAKDQLRLGKMVQAS---QFDGFMPMWNH--------------A 53
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDA 146
S + G +L DQ+ + + S S G S T A
Sbjct: 54 SVDDVEGIDALRWDDQEKIRNYVGSASAGTSSTAA 88
>gi|302771529|ref|XP_002969183.1| hypothetical protein SELMODRAFT_90144 [Selaginella moellendorffii]
gi|300163688|gb|EFJ30299.1| hypothetical protein SELMODRAFT_90144 [Selaginella moellendorffii]
Length = 965
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 36/158 (22%)
Query: 1 SPFFDGKTPKWFHEECFW-KKNRPKALLDIHNVTSLRHQDQEMIKSKILG---------- 49
SP FDG P W H C KKN ++ D+ +LR DQ+ ++ I G
Sbjct: 39 SPKFDGWIPVWHHYSCIAVKKNTISSIEDVDGFDNLRWGDQKKLRKYIEGKKEKGKQKTE 98
Query: 50 ----------NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC 99
IE AK++R+ CR C+ K+ KGE R+S + + + P + H C
Sbjct: 99 QEEETSSFEHTIEIAKASRAICRVCKEKLVKGEARISTVENEKYRS------PTFRHAKC 152
Query: 100 FNAVRLDLEFSASGK---QIPGFGSLEKKDQKIVEATL 134
F +EF A + ++ G+ +L++ +QK + L
Sbjct: 153 F------VEFFAWDQPIEELDGWDTLDESEQKCLRPVL 184
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS+R+ C C KI K E+R+ +M + K G IP W+H SC + + +
Sbjct: 10 EYAKSSRAACGACHEKIDKDELRLGRM---VESPKFDGWIPVWHHYSCIAVKKNTI---S 63
Query: 112 SGKQIPGFGSLEKKDQK 128
S + + GF +L DQK
Sbjct: 64 SIEDVDGFDNLRWGDQK 80
>gi|302784218|ref|XP_002973881.1| hypothetical protein SELMODRAFT_100128 [Selaginella moellendorffii]
gi|300158213|gb|EFJ24836.1| hypothetical protein SELMODRAFT_100128 [Selaginella moellendorffii]
Length = 969
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 35/160 (21%)
Query: 1 SPFFDGKTPKWFHEECFW-KKNRPKALLDIHNVTSLRHQDQEMIKSKILGN--------- 50
SP FDG P W H C KKN ++ D+ +LR DQ+ ++ I G+
Sbjct: 39 SPKFDGWIPVWHHYSCIARKKNTISSIEDVDGFDNLRWGDQKKLRKYIEGDEAGALEDNE 98
Query: 51 ----------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEW 94
IE AK++R+ CR C+ K+ KGE R+S + + + P +
Sbjct: 99 EEKIEQEEETSSFEHTIEIAKASRAICRVCKEKLVKGEARISTVENEKYRS------PTF 152
Query: 95 YHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATL 134
H CF + +++ G+ +L++ +QK + L
Sbjct: 153 RHAKCFVEF---FSWDQPIEELDGWDTLDESEQKCLRPVL 189
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS+R+ C C KI K E+R+ +M + K G IP W+H SC + + +
Sbjct: 10 EYAKSSRAACGACHDKIDKDELRLGRM---VESPKFDGWIPVWHHYSCIARKKNTI---S 63
Query: 112 SGKQIPGFGSLEKKDQK 128
S + + GF +L DQK
Sbjct: 64 SIEDVDGFDNLRWGDQK 80
>gi|195996927|ref|XP_002108332.1| hypothetical protein TRIADDRAFT_52697 [Trichoplax adhaerens]
gi|190589108|gb|EDV29130.1| hypothetical protein TRIADDRAFT_52697 [Trichoplax adhaerens]
Length = 873
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 25/154 (16%)
Query: 8 TPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGNIE--------------- 52
T W H CF+KK + +I +LR +DQE I+ I +IE
Sbjct: 40 TLVWNHCGCFFKKYTLPNVEEIDGFATLRLEDQEKIRKYIAADIENAASEYVEETEHLDQ 99
Query: 53 --------YAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMI--GGIPEWYHLSCFNA 102
Y + + C C+ I +GE+ V + +Y G M ++YH CF +
Sbjct: 100 DQDDLLISYVQKDCEKCTKCQQDIHQGELYVGRTSYKPQNGSMSTPSNTTDFYHPQCFRS 159
Query: 103 VRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPS 136
L+ S + I GF +L K DQ + L S
Sbjct: 160 ACNTLKIENSIESIKGFYNLNKIDQSKLAELLRS 193
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 42 MIKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFN 101
M +S+ +Y+KSNRS C+ C KI KG +R++ SD + W H CF
Sbjct: 1 MTESEFSVKAQYSKSNRSICKICHKKIGKGSLRLAL----SDMTLV------WNHCGCF- 49
Query: 102 AVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPS 136
+ ++I GF +L +DQ+ + + +
Sbjct: 50 ---FKKYTLPNVEEIDGFATLRLEDQEKIRKYIAA 81
>gi|167524952|ref|XP_001746811.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774591|gb|EDQ88218.1| predicted protein [Monosiga brevicollis MX1]
Length = 891
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
+E+AKS R+ CR CE KIAKG++R + + + G +P WYH CF
Sbjct: 67 VEHAKSGRAACRACEEKIAKGDLRFAVLCEAEPGSRYRGPVPRWYHKDCF 116
>gi|449496369|ref|XP_002194832.2| PREDICTED: poly [ADP-ribose] polymerase 1 [Taeniopygia guttata]
Length = 1129
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 52 EYAKSNRSTCRGCEAKIAK----------GEIRVSKMNYDSDQGKMIGGIPEWYHLSCFN 101
EYAKS R++C+ C IAK G+IR+SK ++ ++ G I WYH CF
Sbjct: 224 EYAKSGRASCKKCGESIAKDSLRLALMVQGQIRISKKMVHPEKPQL-GMIDNWYHPDCFV 282
Query: 102 AVRLDLEF--SASGKQIPGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
+ R +L F + Q+ GF L+ +D++ ++ LP+ S+G K + +
Sbjct: 283 SRRAELGFLPAYGATQLLGFSILKAEDKETLKKQLPATKSEGKRKGEEV 331
>gi|358334028|dbj|GAA38154.2| poly [ADP-ribose] polymerase [Clonorchis sinensis]
Length = 1106
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 15/97 (15%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKM----NYDSDQGKMIGGIPEWYHLSCFNAVRL 105
++YAKS R+ C C+ I + +RV+++ N+D G IP+W+H CF ++
Sbjct: 8 QVDYAKSGRAGCTKCKTPIPQDSLRVARLIQASNFD-------GKIPKWFHFRCFFTGKI 60
Query: 106 DLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVS 142
++ ++ +I F SL +DQ+ + + L S SDG++
Sbjct: 61 KIQATS---EIKNFDSLRWEDQEKIRSALGS-SDGIT 93
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 16/107 (14%)
Query: 4 FDGKTPKWFHEECFWK-KNRPKALLDIHNVTSLRHQDQEMIKSKILGNIEYAKSNRSTCR 62
FDGK PKWFH CF+ K + +A +I N SLR +DQE I+S LG+ + + +T +
Sbjct: 42 FDGKIPKWFHFRCFFTGKIKIQATSEIKNFDSLRWEDQEKIRSA-LGSSDGITTPPTTLK 100
Query: 63 --------GCEAKIAKGEIRVSK-MNYDSDQGKMIGGIPEWYHLSCF 100
G KG + + M ++ D+ + YHLSCF
Sbjct: 101 FSIKLALPGLNCTTCKGVLLQERHMIHEGDKESTVD-----YHLSCF 142
>gi|350644595|emb|CCD60678.1| poly [ADP-ribose] polymerase, putative [Schistosoma mansoni]
Length = 957
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 1 SPFFDGKTPKWFHEECFWK-KNRPKALLDIHNVTSLRHQDQEMIKSKI---LGNIEYAKS 56
+P FDGK P+WFH +CFWK K ++ +I N S+R +DQE I++ I +G+++ K
Sbjct: 39 APNFDGKIPRWFHYDCFWKSKAHVESTAEIKNFDSIRWEDQEKIRAAINSEIGSLKPPKP 98
Query: 57 NRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG--IPEWY-HLSCFNAVRLDLEFSASG 113
+S ++Y ++ ++G P + HLSCF E
Sbjct: 99 GKSP-----------------VSYQMERHTVLGSGKKPTFMCHLSCFLKSN---ECPEDI 138
Query: 114 KQIPGFGSLEKKDQKIV 130
Q+ GF L DQ V
Sbjct: 139 SQLVGFNKLSTVDQDAV 155
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKM----NYDSDQGKMIGGIPEWYHLSCFNAVRL 105
+++YAKSNRS C C+ +I + +R++ + N+D G IP W+H CF +
Sbjct: 8 DVDYAKSNRSKCNKCKVEINQNSLRIAILVQAPNFD-------GKIPRWFHYDCFWKSKA 60
Query: 106 DLEFSASGKQIPGFGSLEKKDQKIVEATLPS 136
+E +A +I F S+ +DQ+ + A + S
Sbjct: 61 HVESTA---EIKNFDSIRWEDQEKIRAAINS 88
>gi|357136320|ref|XP_003569753.1| PREDICTED: uncharacterized protein LOC100844676 [Brachypodium
distachyon]
Length = 478
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 17/88 (19%)
Query: 46 KILGNIEYAKSNRSTCRGCEAKIAKGEIRVSK-----MNYDSDQGKMIGGIPEWYHLSCF 100
K+ ++EYAKS RS+C+GC A IAKG +R+ YDS + WYH++CF
Sbjct: 36 KVTVSVEYAKSGRSSCKGCSASIAKGALRLGASARDPRGYDSTK---------WYHVACF 86
Query: 101 NAVRLDLEFSASGKQIPGFGSLEKKDQK 128
A L +++ GF S++ D++
Sbjct: 87 PASSHPL---GPVEKVEGFESIKDDDRE 111
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 54/163 (33%)
Query: 10 KWFHEECFWKKNRPKALLD-IHNVTSLRHQDQEMIKSKILGN------------------ 50
KW+H CF + P ++ + S++ D+E ++ N
Sbjct: 79 KWYHVACFPASSHPLGPVEKVEGFESIKDDDREQLRELEKNNKRDQTAISPLEVPSPKKA 138
Query: 51 ------------------IEYAKSNRSTCRGCEAKIAKGEIRV-----SKMNYDSDQGKM 87
+EYAKS RSTC+GC IAKG +R+ +DS +
Sbjct: 139 KAHLSSPEAGVEENASVSVEYAKSARSTCKGCSVSIAKGVLRLGVSVRDPRGFDSTK--- 195
Query: 88 IGGIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIV 130
WYH++CF L +++ GF S++ D++++
Sbjct: 196 ------WYHVTCFPTSSHPL---GPIEKVKGFDSIKDDDRELL 229
>gi|326492215|dbj|BAK01891.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 447
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF 109
++EYAKS RS+C+GC A IAKG +R+ +D +WYH++CF A L
Sbjct: 12 SVEYAKSGRSSCKGCSAAIAKGALRLGATAHDPRGYDST----KWYHVACFPASSHPL-- 65
Query: 110 SASGKQIPGFGSLEKKDQK 128
+++ GF S++ D++
Sbjct: 66 -GPVEEVEGFDSIKDDDRE 83
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 47/155 (30%)
Query: 10 KWFHEECFWKKNRP-KALLDIHNVTSLRHQDQEMIKSKILGN------------------ 50
KW+H CF + P + ++ S++ D+E ++ N
Sbjct: 51 KWYHVACFPASSHPLGPVEEVEGFDSIKDDDREELRELEKNNKRDQTAVSPLEVPSPKKA 110
Query: 51 ---------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDS---DQGKMIGGIP 92
+EYAKS RSTC+GC A IAKG +R+ +D D K
Sbjct: 111 KVSPKAGVAEEGSVSVEYAKSARSTCKGCNASIAKGALRIGVSAHDPRGFDSTK------ 164
Query: 93 EWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQ 127
WYH++CF L +++ GF S++ D+
Sbjct: 165 -WYHVACFPTSSHPL---GPVEKLKGFDSIKDDDR 195
>gi|225461681|ref|XP_002285464.1| PREDICTED: uncharacterized protein LOC100243613 [Vitis vinifera]
gi|302142893|emb|CBI20188.3| unnamed protein product [Vitis vinifera]
Length = 354
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 11/94 (11%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EYAKSNRS+C+ C I+ +R+ + +G + +W+H+ CF+A E
Sbjct: 11 VEYAKSNRSSCKTCSKTISANAVRLGLVT----RGARGFDMTKWHHVHCFSAGS---ESI 63
Query: 111 ASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKT 144
+S + I GF SL+ DQ+ L L DG +K+
Sbjct: 64 SSAEMIQGFASLKSSDQE----ALKKLVDGFAKS 93
>gi|294461630|gb|ADE76375.1| unknown [Picea sitchensis]
Length = 395
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 25/150 (16%)
Query: 4 FDGKTPKWFHEECFWK-KNRPKALLDIHNVTSLRHQDQEMIKSKILGNIE-YAKSN---- 57
F+G P W H EC K + + + D+ + L +DQ+ IK G E A +N
Sbjct: 46 FEGVMPIWNHVECILKYPGQFRTIDDVEGLDILESEDQKKIKKYFEGLCEGSAPTNAYKA 105
Query: 58 ---------------RSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102
R+TC+ C KIAKGEIR+S M D + G + W H CF
Sbjct: 106 VEGIDESSIEKSKSSRATCKSCNQKIAKGEIRISTM-ADPENPWFRGTVAVWRHAKCFLE 164
Query: 103 VRLDLEFSASGKQIPGFGSLEKKDQKIVEA 132
+ +++ + + G+ SL +D+ V++
Sbjct: 165 IGW---WTSPIENMSGWESLSPEDKHAVQS 191
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EYAKS+RS+C+ C+ I KG +R++KM + G +P W H+ C ++ +F
Sbjct: 13 VEYAKSSRSSCKTCKQPIGKGSLRIAKMVAAR---QFEGVMPIWNHVECI--LKYPGQFR 67
Query: 111 ASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDA 146
+ G LE +DQK ++ L +G + T+A
Sbjct: 68 TID-DVEGLDILESEDQKKIKKYFEGLCEGSAPTNA 102
>gi|440803813|gb|ELR24696.1| Poly(ADPribose) polymerase catalytic domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 1093
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 64/167 (38%), Gaps = 54/167 (32%)
Query: 4 FDGKTPKWFHEECFWKKNRPKALLDIH------NVTSLRHQDQEMIKSKILGN------- 50
FDG+ W H CF+ K + D+H N + LR DQ IK + N
Sbjct: 38 FDGEYYTWHHTSCFFDKRK-----DVHDPNSIKNFSLLRPTDQPKIKKFLDKNKPAPAAA 92
Query: 51 ------------------------------IEYAKSNRSTCRGCEAKIAKGEIRVSKMNY 80
IEYAKS+R+ C C+ I K IR+ +
Sbjct: 93 AAGGDAGGEGEKGGDSGAAAAGASGSGDFKIEYAKSSRAKCVHCKTNIEKDTIRIGILEP 152
Query: 81 DSDQGKMIGGIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQ 127
S K G W+H SCF R D++ SAS + GF L DQ
Sbjct: 153 SS---KFDGEYYTWHHASCFFDKRKDVKSSAS---LKGFDLLRPADQ 193
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF 109
+IEYAKS RS C C+ I K IR+ + S K G W+H SCF R D+
Sbjct: 4 SIEYAKSARSKCVHCKMAIDKDSIRIGILEPSS---KFDGEYYTWHHTSCFFDKRKDVHD 60
Query: 110 SASGKQIPGFGSLEKKDQKIVEATL 134
S I F L DQ ++ L
Sbjct: 61 PNS---IKNFSLLRPTDQPKIKKFL 82
>gi|348681372|gb|EGZ21188.1| hypothetical protein PHYSODRAFT_491689 [Phytophthora sojae]
Length = 285
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 33 TSLRHQDQEMIKSKILG----NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMI 88
T+L D +++ ++ ++E AKS RS CR C I KG +RV KM D G +
Sbjct: 158 TNLLRADMKLLDRRLTAFADVDVELAKSGRSKCRKCRESIDKGAVRVGKMMKDKVAGGKV 217
Query: 89 GGIPEWYHLSCF 100
I W+H CF
Sbjct: 218 MEIRVWFHEDCF 229
>gi|825702|emb|CAA39606.1| NAD(+) ADP-ribosyltransferase [Homo sapiens]
Length = 95
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVK 86
>gi|255567066|ref|XP_002524515.1| polynucleotide kinase- 3'-phosphatase, putative [Ricinus communis]
gi|223536189|gb|EEF37842.1| polynucleotide kinase- 3'-phosphatase, putative [Ricinus communis]
Length = 332
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 12/84 (14%)
Query: 44 KSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAV 103
K+KI+ EYAKSNRSTC+ C I+ +R+ + DS M +W+HL CF+
Sbjct: 5 KAKIVA--EYAKSNRSTCKKCSTVISAKALRLGLVTKDSRGFDMT----KWHHLDCFSIT 58
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQ 127
+S I GF SL+ +DQ
Sbjct: 59 ------ISSTDAIGGFASLQSRDQ 76
>gi|159164223|pdb|2DMJ|A Chain A, Solution Structure Of The First Zf-Parp Domain Of Human
Poly(Adp-Ribose)polymerase-1
Length = 106
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 15 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 70
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVS 142
+ ++ GF L DQ+ V+ T + G S
Sbjct: 71 IRHPDV--EVDGFSELRWDDQQKVKKTAEAGGSGPS 104
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 48 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVK 93
>gi|317455323|pdb|3ODA|A Chain A, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455324|pdb|3ODA|B Chain B, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455325|pdb|3ODA|C Chain C, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455326|pdb|3ODA|D Chain D, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455327|pdb|3ODA|E Chain E, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455328|pdb|3ODA|F Chain F, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455329|pdb|3ODA|G Chain G, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455330|pdb|3ODA|H Chain H, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|388604239|pdb|4DQY|A Chain A, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
gi|388604242|pdb|4DQY|D Chain D, Structure Of Human Parp-1 Bound To A Dna Double Strand
Break
Length = 116
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 28 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 83
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 84 IRHPDV--EVDGFSELRWDDQQKVKKT 108
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 61 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVK 106
>gi|357130920|ref|XP_003567092.1| PREDICTED: uncharacterized protein LOC100841627 [Brachypodium
distachyon]
Length = 668
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 17/88 (19%)
Query: 46 KILGNIEYAKSNRSTCRGCEAKIAKGEIRVSK-----MNYDSDQGKMIGGIPEWYHLSCF 100
K+ + EYAKS RS+C+GC A IAKG +R+ YDS + WYH+ CF
Sbjct: 11 KMTMSAEYAKSGRSSCKGCSASIAKGALRLGASALDLRGYDSTK---------WYHVVCF 61
Query: 101 NAVRLDLEFSASGKQIPGFGSLEKKDQK 128
A L +++ GF S++ D++
Sbjct: 62 PASSHPL---GPVEKVKGFDSIKDDDRE 86
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGI--PEWYHLSCFNAVRLDL 107
+IEYAKS RS+CRGC IAKG +R +D + G +WYH++CF + L
Sbjct: 272 SIEYAKSARSSCRGCSVSIAKGSLRFGVPVHD------LRGFDSTKWYHVTCFPTLSHPL 325
Query: 108 EFSASGKQIPGFGSLEKKDQ 127
+++ GF S++ D+
Sbjct: 326 ---GPIEKVKGFDSIKDDDR 342
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
++EYAKS RS+CRGC IAKG +R D + G +WYH++CF
Sbjct: 388 SVEYAKSARSSCRGCSLSIAKGSLRFGIPVPD-----LRGDSTKWYHVTCF 433
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 14/56 (25%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRV-----SKMNYDSDQGKMIGGIPEWYHLSCF 100
++EYAKS RS+CRGC IAKG +R + +DS + WYH++CF
Sbjct: 524 SVEYAKSARSSCRGCSVSIAKGSLRFGVPVRDRRGFDSTK---------WYHVTCF 570
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF 109
++EYAKS RS+C+GC IAKG +R+ ++Y +G WYH++CF L
Sbjct: 131 SVEYAKSARSSCKGCSVSIAKGALRLG-VSYRDARG---FDSTNWYHVTCFPTSSHPL-- 184
Query: 110 SASGKQIPGFGSLEKKDQK 128
+ + GF S++ D++
Sbjct: 185 -CPIENVKGFNSIKDDDRE 202
>gi|321159578|pdb|2L30|A Chain A, Human Parp-1 Zinc Finger 1
Length = 108
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG-IPEWYHLSCFNAVRLD 106
L +EYAKS R++C+ C I K +R++ M Q M G +P WYH SCF V
Sbjct: 8 LYRVEYAKSGRASCKKCSESIPKDSLRMAIMV----QSPMFDGKVPHWYHFSCFWKVGHS 63
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEAT 133
+ ++ GF L DQ+ V+ T
Sbjct: 64 IRHPDV--EVDGFSELRWDDQQKVKKT 88
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 41 SPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVK 86
>gi|297830036|ref|XP_002882900.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328740|gb|EFH59159.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 723
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 45/86 (52%), Gaps = 15/86 (17%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGI--PEWYHLSCFNAVRLDLEF 109
EYAKSNRS+C+ C KIA +R+ ++ K GG+ W+H CF D E
Sbjct: 82 EYAKSNRSSCKSCSKKIAVKSLRLGLIS------KGPGGVDMTRWHHFDCFPT---DSES 132
Query: 110 SASGKQIPGFGSLEKKDQ----KIVE 131
AS I G LEK+DQ K+VE
Sbjct: 133 IASVDDIQGLSVLEKEDQDALTKLVE 158
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS+RSTC+ C IA E+R+ + + M +W+H+ CF +D + +
Sbjct: 360 EYAKSSRSTCKKCSQTIAAKELRLGLVTRNFRGFDMT----QWHHVGCFP---VDSDPIS 412
Query: 112 SGKQIPGFGSLEKKDQ 127
S + + GF L+ DQ
Sbjct: 413 SVEDVGGFSELQSGDQ 428
>gi|224028671|gb|ACN33411.1| unknown [Zea mays]
gi|414880610|tpg|DAA57741.1| TPA: phosphoesterase [Zea mays]
Length = 512
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 41 EMIKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
E + + ++EYAKS RSTC+GC IAKG +R+ D + +WYH+ CF
Sbjct: 150 EGVPDNVTVSVEYAKSGRSTCKGCSENIAKGALRLGASFPDPRGYENT----KWYHVVCF 205
Query: 101 NAVRLDLEFSASGKQIPGFGSLEKKDQ----KIVE 131
L F S + GF S+E D+ K+VE
Sbjct: 206 PTSSYPL-FPMS--NLKGFDSIEDHDRDKLHKLVE 237
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF 109
++EYAKS RS C+GC IA G +R+ D G +WYH+SC + L
Sbjct: 43 SVEYAKSGRSICKGCSGVIASGALRLGASARDPRG----FGATKWYHVSCLPSSSYPLGP 98
Query: 110 SASGKQIPGFGSLEKKDQ 127
S I GF S++ D+
Sbjct: 99 IGS---IKGFDSIKDHDR 113
>gi|358345329|ref|XP_003636733.1| Poly [Medicago truncatula]
gi|355502668|gb|AES83871.1| Poly [Medicago truncatula]
Length = 415
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKSNRSTC+ C I +R+ + D +G + +W+HL+CF +
Sbjct: 11 EYAKSNRSTCKKCSEAIQSKTLRLGLITKDKSRG---FDVTKWHHLTCFTVPSS----HS 63
Query: 112 SGKQIPGFGSLEKKDQK 128
S +I GF SL+ DQ+
Sbjct: 64 SIDKITGFSSLKSGDQE 80
>gi|195653273|gb|ACG46104.1| phosphoesterase [Zea mays]
Length = 512
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 41 EMIKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
E + + ++EYAKS RSTC+GC IAKG +R+ D + +WYH+ CF
Sbjct: 150 EGVPDNVTVSVEYAKSGRSTCKGCSENIAKGALRLGASFPDPRGYENT----KWYHVVCF 205
Query: 101 NAVRLDLEFSASGKQIPGFGSLEKKDQ 127
L F S + GF S+E D+
Sbjct: 206 PTSSYPL-FPMS--NLKGFDSIEDHDR 229
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF 109
++EYAKS RS C+GC IA G +R+ D G +WYH+SC + L
Sbjct: 43 SVEYAKSGRSICKGCSGVIASGALRLGASARDPRG----FGATKWYHVSCLPSSSYPLGP 98
Query: 110 SASGKQIPGFGSLEKKDQ 127
S I GF S++ D+
Sbjct: 99 IGS---IKGFDSIKDHDR 113
>gi|242054347|ref|XP_002456319.1| hypothetical protein SORBIDRAFT_03g033940 [Sorghum bicolor]
gi|241928294|gb|EES01439.1| hypothetical protein SORBIDRAFT_03g033940 [Sorghum bicolor]
Length = 514
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 41 EMIKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
E + K+ ++EYAKS RSTC+GC IAKG +R+ ++ +G +WYH++CF
Sbjct: 153 EGVPDKVTISVEYAKSGRSTCKGCNENIAKGALRLG-ASFPDPRGYENN---KWYHVACF 208
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 16 CFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILG----NIEYAKSNRSTCRGCEAKIAKG 71
C P + +H V++ R M + L ++EYAKS RSTC+GC IA G
Sbjct: 8 CLRIARNPIRVRLLHPVSAARVTRLAMSTTPPLAAATISVEYAKSGRSTCKGCSGAIASG 67
Query: 72 EIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQK 128
+R+ D +WYH+SC ++ L + I GF S++ D++
Sbjct: 68 ALRLGASARDPRGFDAT----KWYHVSCLPSLSHPL---GPIESIKGFDSIKDHDRE 117
>gi|440795012|gb|ELR16153.1| Poly(ADPribose) polymerase and DNA-Ligase Zn-finger region domain
containing protein [Acanthamoeba castellanii str. Neff]
Length = 296
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EYAKS RS C+ C +I G +R+ + YD D + WYH+ CF D +
Sbjct: 41 VEYAKSARSQCKACSRQIPNGAVRIGQ-QYDRDHSGYL-----WYHVDCFPNFPRDGSTT 94
Query: 111 ASGKQIPGFGSLEKKDQKIVE 131
A GF L K Q +V+
Sbjct: 95 AESFLF-GFEKLAPKAQALVQ 114
>gi|119629545|gb|EAX09140.1| hCG1811463, isoform CRA_c [Homo sapiens]
Length = 233
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 59 STCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA--SGKQI 116
++ RG KI KG++R+SK D ++ + +G I WYH CF R +L F S Q+
Sbjct: 24 ASARGVMEKIEKGQMRLSKKMLDPEKPQ-LGMIDPWYHPGCFVKNREELGFQPEYSASQL 82
Query: 117 PGFGSLEKKDQKIVEATLPSL-SDGVSKTDAI 147
GF L +D++ ++ LP + S+G + D +
Sbjct: 83 KGFSLLAAEDKETLKKQLPGVKSEGKREGDEV 114
>gi|195998375|ref|XP_002109056.1| hypothetical protein TRIADDRAFT_52698 [Trichoplax adhaerens]
gi|190589832|gb|EDV29854.1| hypothetical protein TRIADDRAFT_52698 [Trichoplax adhaerens]
Length = 749
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF 109
EYAKS RS C C+ I K +R++ M ++ D K + +WYH SCF +
Sbjct: 80 EYAKSKRSLCNACKKNIGKNSLRIAAMLSSWYVDDAK----VAKWYHYSCFFRKK---NI 132
Query: 110 SASGKQIPGFGSLEKKDQ-KIVEATLPSLSD-GVSKTDAIS 148
S G I GF SL +DQ KI P+ + G SKT S
Sbjct: 133 SNEG-DIDGFNSLRPEDQEKIRNRIDPTTQNQGYSKTSTSS 172
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 5 DGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKI---LGNIEYAKSNRSTC 61
D K KW+H CF++K DI SLR +DQE I+++I N Y+K++ S+
Sbjct: 114 DAKVAKWYHYSCFFRKKNISNEGDIDGFNSLRPEDQEKIRNRIDPTTQNQGYSKTSTSSA 173
Query: 62 RGCE 65
+ E
Sbjct: 174 QAHE 177
>gi|440798641|gb|ELR19708.1| Poly(ADPribose) polymerase catalytic domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 1098
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 49 GNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
+EYA S RS CR C KI ++RV++M K G IPEW+H CF
Sbjct: 315 ARVEYAASGRSGCRVCRQKIDMDDLRVARM---VQSQKFDGKIPEWHHYDCF 363
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 4 FDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGNIEYAKS 56
FDGK P+W H +CF+ + + + + +R +DQE ++ +I + AK+
Sbjct: 350 FDGKIPEWHHYDCFFSTYKVIDIGYVSGASKVRWEDQEKLRKQIEADQPRAKA 402
>gi|440790223|gb|ELR11506.1| Poly(ADPribose) polymerase catalytic domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 774
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EYA S R+ CR C KI K E+R+ K+++ K G I EW+HL+CF R +E +
Sbjct: 5 VEYASSCRANCRVCWNKIPKAELRMGKLSFSR---KFDGTICEWHHLNCF-LKRYTVE-A 59
Query: 111 ASGKQIPGFGSLEKKDQK 128
A I G + +D++
Sbjct: 60 AEAPSIKGLDDIRWEDKE 77
>gi|330796781|ref|XP_003286443.1| hypothetical protein DICPUDRAFT_87156 [Dictyostelium purpureum]
gi|325083566|gb|EGC37015.1| hypothetical protein DICPUDRAFT_87156 [Dictyostelium purpureum]
Length = 794
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 7/97 (7%)
Query: 51 IEYAKSNRSTCR--GCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF----NAVR 104
+EYA S RS+C+ C+ +I K +R+ K+ Y SD+ + G +W+H +CF R
Sbjct: 8 VEYAGSGRSSCKHSKCKKQIEKTSLRIGKL-YPSDRFETDGQAIDWFHPNCFFEKQKNAR 66
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGV 141
+ + GF ++K DQK++E + D +
Sbjct: 67 KTTKKVDEIDDLEGFDDIKKSDQKLIEELINDHRDSI 103
>gi|156375378|ref|XP_001630058.1| predicted protein [Nematostella vectensis]
gi|156217071|gb|EDO37995.1| predicted protein [Nematostella vectensis]
Length = 894
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
+EYA R+ C+GC+ +I K R++K+ N S+ G G + +WYH+ C F+ R
Sbjct: 10 VEYAPQGRAKCKGCKEQIEKSSARIAKLAPNPFSEDG---GLMKQWYHVKCIFDSFSRAR 66
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLS 138
+ + + GF +++ DQ ++ + LS
Sbjct: 67 ATTKKIEDAEDLDGFVDMKQDDQNTIKQLISGLS 100
>gi|388495630|gb|AFK35881.1| unknown [Lotus japonicus]
Length = 380
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKSNRS+C+GC I +R+ ++ D +G +W+ L+CF D
Sbjct: 54 EYAKSNRSSCKGCSKTIENKSLRLGIVSKDKTRG---FETVKWHRLTCFPPPYPD----- 105
Query: 112 SGKQIPGFGSLEKKDQKIVE 131
S I GF SLE DQ+ V+
Sbjct: 106 SPHIITGFSSLESSDQEAVK 125
>gi|339239085|ref|XP_003381097.1| poly [ADP-ribose] polymerase [Trichinella spiralis]
gi|316975911|gb|EFV59287.1| poly [ADP-ribose] polymerase [Trichinella spiralis]
Length = 839
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRPKALLDIHNVTSLRHQDQEMIKSKILGNIEYAKSNRST 60
S FFDG+ P W+H +CFW + + D + +LR DQE I+ +I G +N +
Sbjct: 4 STFFDGRIPTWYHYDCFWNCTKVLSEEDFPGLDNLRWNDQEKIRKRIQGKFSDECNNEAA 63
Query: 61 CRGCE 65
+ E
Sbjct: 64 TKSYE 68
>gi|308483832|ref|XP_003104117.1| hypothetical protein CRE_01104 [Caenorhabditis remanei]
gi|308258425|gb|EFP02378.1| hypothetical protein CRE_01104 [Caenorhabditis remanei]
Length = 965
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 49/154 (31%)
Query: 1 SPFFDGKTPKWFHEECFWK---KNRPKALLD-IHNVTSLRHQDQEMIKSKI--------- 47
S +FDG WFH ECFW+ +NR ++ I V L +DQE+++++I
Sbjct: 42 STYFDGTIDSWFHYECFWQNLARNRKDININSIRGVDWLNWEDQELLRNRIQKFREPVAH 101
Query: 48 LGNIEYAK-------------SNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEW 94
++ Y +NR C C A KGE++V N ++
Sbjct: 102 FISVNYENVLFLSSLKSESSLTNRGKCIKCSANFEKGEMKVIFKN-------------KY 148
Query: 95 YHLSC----FNAVRLDLEFSASGKQIPGFGSLEK 124
H C F+ + +LE QIPG+ E+
Sbjct: 149 IHFKCHAESFDRIEGELE------QIPGWNDYEE 176
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF--NAVRLDLE 108
IEYAK NRS C+ C+ I + +R M+ + G I W+H CF N R +
Sbjct: 12 IEYAKLNRSYCKKCKKNIGENSLR---MSLNQKSTYFDGTIDSWFHYECFWQNLARNRKD 68
Query: 109 FSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISH 149
+ + I G L +DQ+++ + + V+ ++++
Sbjct: 69 ININS--IRGVDWLNWEDQELLRNRIQKFREPVAHFISVNY 107
>gi|57900566|dbj|BAD87018.1| putative phosphoesterase [Oryza sativa Japonica Group]
Length = 463
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 49/157 (31%)
Query: 8 TPKWFHEECFWKKNRP-KALLDIHNVTSLRHQDQEMIKS--------------------- 45
+ KW+H CF + P + + S++ +D+E ++
Sbjct: 53 STKWYHVACFPSSSHPIDPVEKVKGFDSIKEEDREEVRELNKTCKRDHTAVGTTEESSPK 112
Query: 46 ----------KILGNIEYAKSNRSTCRGCEAKIAKGEIRVSK-----MNYDSDQGKMIGG 90
+ ++EYAKS RSTC+GC IA G +R+ +DS +
Sbjct: 113 KVKASPGVAENVSISVEYAKSGRSTCKGCSESIAAGALRLGASIRDPRGFDSTK------ 166
Query: 91 IPEWYHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQ 127
WYH++CF + + + + GF S+E +D+
Sbjct: 167 ---WYHIACFPSSTYP---AFPVENLKGFDSIENQDR 197
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 13/84 (15%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDS---DQGKMIGGIPEWYHLSCFNAVRLD 106
++EYAKS RS+C+ C IAKG +R+ D D K WYH++CF +
Sbjct: 16 SVEYAKSGRSSCKVCSEGIAKGALRLGASARDPRGFDSTK-------WYHVACFPSSSHP 68
Query: 107 LEFSASGKQIPGFGSLEKKDQKIV 130
++ +++ GF S++++D++ V
Sbjct: 69 ID---PVEKVKGFDSIKEEDREEV 89
>gi|118369331|ref|XP_001017870.1| Poly polymerase and DNA-Ligase Zn-finger region family protein
[Tetrahymena thermophila]
gi|89299637|gb|EAR97625.1| Poly polymerase and DNA-Ligase Zn-finger region family protein
[Tetrahymena thermophila SB210]
Length = 244
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 13/60 (21%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRV----SKMNYDSDQGKMIGGIPEWYHLSCFNAVRL 105
+IE AKS RS+C+ C+ KIAK E+RV SK +YD WYH+SCF+ +
Sbjct: 5 SIEKAKSARSSCKQCKQKIAKDEVRVGISISKGDYDE---------TSWYHVSCFSKTKF 55
>gi|308468748|ref|XP_003096615.1| hypothetical protein CRE_01248 [Caenorhabditis remanei]
gi|308242487|gb|EFO86439.1| hypothetical protein CRE_01248 [Caenorhabditis remanei]
Length = 963
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 26/101 (25%)
Query: 1 SPFFDGKTPKWFHEECFWKK-NRPKALLDIHNVTS---LRHQDQEMIKSKI--------- 47
S FFDG WFH ECFW+ +R + ++I ++ LR +DQE+++++I
Sbjct: 42 STFFDGTIDCWFHYECFWQNLSRSRNEINISSIRGVDWLRWEDQELLRNRIQKFREPVAH 101
Query: 48 -----------LGNI--EYAKSNRSTCRGCEAKIAKGEIRV 75
L +I E + +NR C C KGE++V
Sbjct: 102 FVSVNYENVLFLSSIKSESSLTNRGKCMKCSVNFEKGEMKV 142
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF--NAVRLDLE 108
IEYAKSNRS C+ C+ I +R M+ + G I W+H CF N R E
Sbjct: 12 IEYAKSNRSNCKKCKKNIGANSLR---MSLNQQSTFFDGTIDCWFHYECFWQNLSRSRNE 68
Query: 109 FSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISH 149
+ S I G L +DQ+++ + + V+ ++++
Sbjct: 69 INISS--IRGVDWLRWEDQELLRNRIQKFREPVAHFVSVNY 107
>gi|328870256|gb|EGG18631.1| SMAD/FHA domain-containing protein [Dictyostelium fasciculatum]
Length = 1221
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 51 IEYAKSNRSTCRG--CEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF----NAVR 104
+EYAK+ RS+C+ C+A I K +R++KM Y S++ G +++H CF R
Sbjct: 8 VEYAKTARSSCKSTDCKANIPKDTVRIAKM-YPSNRFDDDGVATDYFHSECFFRAQGRAR 66
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATL 134
+ + + + GF LEKKDQ ++ L
Sbjct: 67 KTSKRAEDIEDLEGFEELEKKDQAEIKDLL 96
>gi|357498215|ref|XP_003619396.1| Poly [Medicago truncatula]
gi|355494411|gb|AES75614.1| Poly [Medicago truncatula]
Length = 271
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKSNRSTC+ C I +R+ + D +G + +W+HL+CF + +S+
Sbjct: 11 EYAKSNRSTCKKCSEAIQSKTLRLGLVTKDKSRG---FDVTKWHHLTCFP---VPSSYSS 64
Query: 112 SGKQIPGFGSLEKKDQKIV 130
K I GF SL+ DQ+ +
Sbjct: 65 IDK-IIGFSSLKSGDQEAL 82
>gi|391345556|ref|XP_003747051.1| PREDICTED: DNA ligase 3 [Metaseiulus occidentalis]
Length = 900
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVRL 105
EYA + C+ C+ KI KG +R+ ++ N SD G G + EW+H++C + R
Sbjct: 12 EYAARGTAGCKKCKTKIEKGLLRIGRIVPNPFSDAG---GEMKEWFHVACIFDVLSRARA 68
Query: 106 DLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDA 146
+ + I GF L+ +D+K++ + L + V A
Sbjct: 69 TTKVVEEAEDIDGFSELKVEDRKLINEKIDELQELVQAKRA 109
>gi|317455307|pdb|3OD8|A Chain A, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455308|pdb|3OD8|B Chain B, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455309|pdb|3OD8|C Chain C, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455310|pdb|3OD8|D Chain D, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455311|pdb|3OD8|E Chain E, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455312|pdb|3OD8|F Chain F, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455313|pdb|3OD8|G Chain G, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
gi|317455314|pdb|3OD8|H Chain H, Human Parp-1 Zinc Finger 1 (Zn1) Bound To Dna
Length = 116
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIR----VSKMNYDSDQGKMIGGIPEWYHLSCF 100
S L +EYAKS R++C+ C I K +R V +D G +P WYH SCF
Sbjct: 25 SDKLYRVEYAKSGRASCKKCSESIPKDSLRXAIXVQSPXFD-------GKVPHWYHFSCF 77
Query: 101 NAVRLDLEFSASGKQIPGFGSLEKKDQKIVEAT 133
V + ++ GF L DQ+ V+ T
Sbjct: 78 WKVGHSIRHPDV--EVDGFSELRWDDQQKVKKT 108
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP--KALLDIHNVTSLRHQDQEMIK 44
SP FDGK P W+H CFWK +++ + LR DQ+ +K
Sbjct: 61 SPXFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVK 106
>gi|218189015|gb|EEC71442.1| hypothetical protein OsI_03657 [Oryza sativa Indica Group]
Length = 454
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 26/115 (22%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDS---DQGKMIGGIPEWYHLSCFNAVRLD 106
++EYAKS RS+C+ C IAKG +R+ D D K WYH++CF +
Sbjct: 16 SVEYAKSGRSSCKVCSEGIAKGALRLGASARDPRGFDSTK-------WYHVACFPSSSHP 68
Query: 107 LEFSASGKQIPGF-------------GSLEKKDQKIVEATLPSLSDGVSKTDAIS 148
++ ++I GF G+ E+ K V+A+L S + GV++ +IS
Sbjct: 69 ID---PVEKIKGFDSIKTCKRDHTAVGTTEESSPKKVKASLSSPAAGVAENASIS 120
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 14/56 (25%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSK-----MNYDSDQGKMIGGIPEWYHLSCF 100
++EYAKS RSTC+GC IA G +R+ +DS + WYH++CF
Sbjct: 120 SVEYAKSGRSTCKGCSESIAAGALRLGASIRDPRGFDSTK---------WYHIACF 166
>gi|222619218|gb|EEE55350.1| hypothetical protein OsJ_03379 [Oryza sativa Japonica Group]
Length = 475
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 46/130 (35%)
Query: 8 TPKWFHEECFWKKNRP-KALLDIHNVTSLRHQDQEMIKS--------------------- 45
+ KW+H CF + P + + S++ +D+E ++
Sbjct: 53 STKWYHVACFPSSSHPIDPVEKVKGFDSIKEEDREEVRELNKTCKRDHTAVGTTEESSPK 112
Query: 46 ----------KILGNIEYAKSNRSTCRGCEAKIAKGEIRVSK-----MNYDSDQGKMIGG 90
+ ++EYAKS RSTC+GC IA G +R+ +DS +
Sbjct: 113 KVKASPGVAENVSISVEYAKSGRSTCKGCSESIAAGALRLGASIRDPRGFDSTK------ 166
Query: 91 IPEWYHLSCF 100
WYH++CF
Sbjct: 167 ---WYHIACF 173
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 13/84 (15%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDS---DQGKMIGGIPEWYHLSCFNAVRLD 106
++EYAKS RS+C+ C IAKG +R+ D D K WYH++CF +
Sbjct: 16 SVEYAKSGRSSCKVCSEGIAKGALRLGASARDPRGFDSTK-------WYHVACFPSSSHP 68
Query: 107 LEFSASGKQIPGFGSLEKKDQKIV 130
++ +++ GF S++++D++ V
Sbjct: 69 ID---PVEKVKGFDSIKEEDREEV 89
>gi|326435432|gb|EGD81002.1| hypothetical protein PTSG_10946 [Salpingoeca sp. ATCC 50818]
Length = 180
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 40 QEMIKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIG-GIPEWYHLS 98
+E ++++L +E AKS+RSTCR C+ I +GE R+ M G+ W+H+
Sbjct: 28 EEKKETRVL--VEPAKSSRSTCRRCKDTIDRGETRIGIMAPSRYSGETPAYDTTWWFHVP 85
Query: 99 CFNAVRL-DLEFSASGKQ---IPGFGSLEKKDQKIVEATL 134
CF +L E++ ++ + GF L+ K++ +E TL
Sbjct: 86 CFITRQLRSREYTPKVRETSDLEGFDDLDPKERHKLEQTL 125
>gi|320168213|gb|EFW45112.1| polymerase [Capsaspora owczarzaki ATCC 30864]
Length = 968
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKSNRS+C+ C++ I K E+R+ +M G IP W H+ C F+
Sbjct: 8 EYAKSNRSSCKQCQSTIDKDELRIGEMVQSPFHD---GRIPVWRHVKC--------HFAK 56
Query: 112 SGKQIPGFGSLEKKD 126
+ + F +E +D
Sbjct: 57 GNRGLTAFAMIEGRD 71
>gi|307107872|gb|EFN56113.1| hypothetical protein CHLNCDRAFT_144713 [Chlorella variabilis]
Length = 154
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC------FNAVR 104
+EYA+S+RS C+GC+A I KG++R+ D +W H C FN +R
Sbjct: 16 LEYARSSRSKCQGCKALIGKGDLRLGSPLQMHDAITF-----KWRHWGCTTPAVLFN-MR 69
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPS 136
+E I G G L+ +D+ +V+ +L S
Sbjct: 70 GKVERHGQALAIAGLGKLKAEDRPVVQQSLDS 101
>gi|242008936|ref|XP_002425250.1| DNA ligase, putative [Pediculus humanus corporis]
gi|212508998|gb|EEB12512.1| DNA ligase, putative [Pediculus humanus corporis]
Length = 927
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC----FNAVRL 105
+++ AK+ R+ C+ C+ KI++GE+R++K+ Y+ G I +W+H+ C F R
Sbjct: 16 HVDRAKTGRAGCKKCKQKISQGELRMAKLAYNPFG---TGTIKQWHHIQCIFDVFKKQRA 72
Query: 106 DLEFSASGKQIPGFGSLEKKDQKIVEATLP 135
+ +I G+ +L + DQ+ + P
Sbjct: 73 TTKKIEHPDEIGGWDNLNENDQQEIINYFP 102
>gi|8777472|dbj|BAA97052.1| unnamed protein product [Arabidopsis thaliana]
Length = 774
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 45 SKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVR 104
SK++ EYAKS+RSTC+ C IA E+R+ + + M +W+HL CF
Sbjct: 406 SKVIS--EYAKSSRSTCKKCSQTIAAKELRLGLVTRNFRGFDM----KQWHHLGCFP--- 456
Query: 105 LDLEFSASGKQIPGFGSLEKKDQ 127
+D + S + I GF L+ DQ
Sbjct: 457 VDSDPIVSVEDIGGFSELQSGDQ 479
>gi|281202122|gb|EFA76327.1| polyADP-ribosyltransferase [Polysphondylium pallidum PN500]
Length = 774
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRL 105
IEY+KSNRSTC+ C A IA ++R+ ++ G WYHL C+ R+
Sbjct: 9 IEYSKSNRSTCKKCRAPIALNDLRIG---LETKSRAFDGYDVSWYHLQCYKFDRV 60
>gi|219121229|ref|XP_002185842.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582691|gb|ACI65312.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 464
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVR 104
+EYAKS RSTC+ C+ KI KG++R+ ++ D+ Q + + W H +CF R
Sbjct: 7 TVEYAKSGRSTCKKCKVKIEKGQMRIG-VHIDNGQFEYVN----WTHPACFTMPR 56
>gi|42564175|ref|NP_188107.3| bifunctional polynucleotide phosphatase/kinase [Arabidopsis
thaliana]
gi|75239130|sp|Q84JE8.1|ZDP_ARATH RecName: Full=Polynucleotide 3'-phosphatase ZDP; AltName: Full=DNA
nick sensor protein
gi|28392958|gb|AAO41914.1| putative DNA nick sensor protein [Arabidopsis thaliana]
gi|28827696|gb|AAO50692.1| putative DNA nick sensor protein [Arabidopsis thaliana]
gi|332642063|gb|AEE75584.1| bifunctional polynucleotide phosphatase/kinase [Arabidopsis
thaliana]
Length = 694
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS+RSTC+ C IA E+R+ + + M +W+HL CF +D +
Sbjct: 331 EYAKSSRSTCKKCSQTIAAKELRLGLVTRNFRGFDM----KQWHHLGCFP---VDSDPIV 383
Query: 112 SGKQIPGFGSLEKKDQ 127
S + I GF L+ DQ
Sbjct: 384 SVEDIGGFSELQSGDQ 399
>gi|186510077|ref|NP_850586.2| bifunctional polynucleotide phosphatase/kinase [Arabidopsis
thaliana]
gi|332642064|gb|AEE75585.1| bifunctional polynucleotide phosphatase/kinase [Arabidopsis
thaliana]
Length = 684
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS+RSTC+ C IA E+R+ + + M +W+HL CF +D +
Sbjct: 321 EYAKSSRSTCKKCSQTIAAKELRLGLVTRNFRGFDM----KQWHHLGCFP---VDSDPIV 373
Query: 112 SGKQIPGFGSLEKKDQ 127
S + I GF L+ DQ
Sbjct: 374 SVEDIGGFSELQSGDQ 389
>gi|356543217|ref|XP_003540059.1| PREDICTED: uncharacterized protein LOC100796730 [Glycine max]
Length = 402
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 35 LRHQDQEMIKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEW 94
LR++ + ++ +YAKS +S+CR C KI +R++ ++ +G I +W
Sbjct: 38 LRNRSPSQMAARESMMADYAKSGKSSCRACSQKIEAKALRLASVS----KGNGPYDIVKW 93
Query: 95 YHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVE 131
+HL CF L +S + I GF SL+ DQ+ ++
Sbjct: 94 HHLRCFP---LSSHSHSSPESIRGFSSLKSSDQEALK 127
>gi|90995400|gb|AAM69280.2|AF453835_1 phosphoesterase [Arabidopsis thaliana]
Length = 637
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS+RSTC+ C IA E+R+ + + M +W+HL CF +D +
Sbjct: 274 EYAKSSRSTCKKCSQTIAAKELRLGLVTRNFRGFDM----KQWHHLGCFP---VDSDPIV 326
Query: 112 SGKQIPGFGSLEKKDQ 127
S + I GF L+ DQ
Sbjct: 327 SVEDIGGFSELQSGDQ 342
>gi|148910013|gb|ABR18091.1| unknown [Picea sitchensis]
Length = 343
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 46 KILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGG--IPEWYHLSCFNAV 103
KIL +EYAKS R+TC+ C I KG +R+ + K GG + WYHL CF +
Sbjct: 4 KIL--VEYAKSARATCKKCGNTIDKGCVRLGIAS------KAAGGFDMTRWYHLHCFPSQ 55
Query: 104 RLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
S + I GF L+ DQ+ ++A +
Sbjct: 56 SE----VVSAENINGFTLLKAFDQEALKALVAEF 85
>gi|145514896|ref|XP_001443353.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410731|emb|CAK75956.1| unnamed protein product [Paramecium tetraurelia]
Length = 277
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 53 YAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF-SA 111
YA S R++CR C+AKIAK E+R+S + + + + YH CF +L +F +A
Sbjct: 16 YAPSARASCRSCQAKIAKDELRLSNIVDEDHYHQQL-----HYHADCF---QLKPDFKNA 67
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLS 138
+ K I +L K DQ+ V+A L L
Sbjct: 68 TYKDIFHVENLTKADQEKVKAILEKLQ 94
>gi|307111622|gb|EFN59856.1| hypothetical protein CHLNCDRAFT_133639 [Chlorella variabilis]
Length = 183
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
IE AKS R+ C+GC+ I +GE+R+ D+ + +W H C A + LE
Sbjct: 5 IEKAKSGRAKCQGCKETIDEGELRMGSEYEVGDRTSI-----KWKHWGCVTAKQ--LENI 57
Query: 111 ASGKQIPGFGSLEKKDQKIVEATL 134
+ + G+ LE+ DQ+ V+ T
Sbjct: 58 GNADNLQGYDELEEADQEAVDNTF 81
>gi|20530704|gb|AAM27195.1|AF499444_1 poly ADP-ribose metabolism enzyme-1 [Caenorhabditis elegans]
Length = 945
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 42/151 (27%)
Query: 1 SPFFDGKTPKWFHEECFW-KKNRPKALLDIHNVTS---LRHQDQEMIKSK---------- 46
S FFDG WFH CFW K R + ++I ++ LR +DQE ++ +
Sbjct: 42 STFFDGNMDSWFHYNCFWIKMIRGRDDINISSIRGVDWLRWEDQEKLRQEIQHFKTASPP 101
Query: 47 -----------ILGNIEYAK--SNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPE 93
IL I+ K SNR C C +GEI+ ++GK
Sbjct: 102 TLTPLCSTTTVILSTIKTEKSLSNRGKCGKCGQNFERGEIKA------HNKGKA------ 149
Query: 94 WYHLSCFNAVRLDLEFSASGKQIPGFGSLEK 124
HL+CF D + S + + IPG+ E+
Sbjct: 150 -NHLNCF-LQEFD-KISGTVEDIPGWADYEE 177
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
IEYAKS RS C+ C+ IA ++R+S MN S G + W+H +CF
Sbjct: 12 IEYAKSGRSNCKTCKKNIALDQLRMS-MNRPST--FFDGNMDSWFHYNCF 58
>gi|145513949|ref|XP_001442885.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410246|emb|CAK75488.1| unnamed protein product [Paramecium tetraurelia]
Length = 280
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 53 YAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF-SA 111
YA S R+TC+GC+AKI K E+R+S + D D YH CF+ L F +A
Sbjct: 16 YAPSGRATCKGCQAKIGKDELRLSNV-IDEDHYHQ----EHHYHADCFS---LKSAFKNA 67
Query: 112 SGKQIPGFGSLEKKDQKIVEATL 134
+ K I +L K+DQ+ V+A L
Sbjct: 68 TYKDIFHVENLTKEDQEKVKAIL 90
>gi|440792573|gb|ELR13782.1| hypothetical protein ACA1_076250 [Acanthamoeba castellanii str.
Neff]
Length = 569
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVR 104
+E AKS RS C GC AKIA+ +RV M + +G+ EW+H++CF R
Sbjct: 109 VETAKSARSRCGGCGAKIAEARLRVG-MKARTSRGRYFER-REWFHMACFELER 160
>gi|330842749|ref|XP_003293334.1| hypothetical protein DICPUDRAFT_41865 [Dictyostelium purpureum]
gi|325076358|gb|EGC30151.1| hypothetical protein DICPUDRAFT_41865 [Dictyostelium purpureum]
Length = 774
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 35 LRHQDQEMIKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEW 94
LRHQ +EY+KSNRS+C+ C + IA IR+ ++ G +W
Sbjct: 12 LRHQ------------VEYSKSNRSSCKKCRSTIAMNAIRIG---VETPSRVFDGYDVKW 56
Query: 95 YHLSCFNAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKT 144
YHLSC + + + + Q+ + L DQ + A L D + +
Sbjct: 57 YHLSCVDFAKSKVFYI---NQLKHYELLRWDDQINIRAVLKQSDDNLDSS 103
>gi|241614142|ref|XP_002406581.1| DNA ligase, putative [Ixodes scapularis]
gi|215500833|gb|EEC10327.1| DNA ligase, putative [Ixodes scapularis]
Length = 851
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
IEYAK + C+ C+AKI K +R++K+ N SD G G + +W+H+ C + R
Sbjct: 8 IEYAKRGTAGCKKCKAKIDKEVLRIAKIVPNPFSDSG---GDMKQWFHVDCIFEQLSRAR 64
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIV 130
+ + + G+ + D+K+V
Sbjct: 65 ATTKKIEEAEDLEGWADVRPDDRKVV 90
>gi|341902689|gb|EGT58624.1| hypothetical protein CAEBREN_29358 [Caenorhabditis brenneri]
Length = 727
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
IEYAKS RSTC+ C I+ G +R M+ + G I W+H CF
Sbjct: 12 IEYAKSARSTCKKCRKTISMGALR---MSVNHQASFFDGNIDSWFHYPCF 58
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 26/102 (25%)
Query: 1 SPFFDGKTPKWFHEECFW----KKNRPKALLDIHNVTSLRHQDQEMIKSKI--------- 47
+ FFDG WFH CFW K + I V L+ +DQE ++ +I
Sbjct: 42 ASFFDGNIDSWFHYPCFWLKLIKGQDEINISSIRGVDWLQWEDQEDLREQIKKFKEPYVY 101
Query: 48 -----------LGNI--EYAKSNRSTCRGCEAKIAKGEIRVS 76
L + E + +NR C C KGEI+V+
Sbjct: 102 VPRTSSINALSLSEMKAERSATNRGKCTKCSINFIKGEIKVN 143
>gi|307214733|gb|EFN89653.1| DNA ligase 3 [Harpegnathos saltator]
Length = 1035
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+E AKS R+ C+ C+ I K E+R+ K+ GK+ +P W+H++C V +
Sbjct: 18 VERAKSGRAKCKKCKCTIEKDELRIGKLVVSFFDGKL---MPAWHHVTCIIEVFAKQRAT 74
Query: 111 AS-----GKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDA 146
K + G+ L +D+++V L L DA
Sbjct: 75 TKRIEDPEKDVKGWERLSDEDKQLVLDKLEELERSSPAKDA 115
>gi|325179617|emb|CCA14015.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 394
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
+E A+SNR+ CR C KI K E+RV K + + + I WYH CF D E
Sbjct: 210 LEPARSNRALCRICNTKINKNELRVGKSHTEERSTR---EIIHWYHRHCFEERATDTE 264
>gi|340371652|ref|XP_003384359.1| PREDICTED: DNA ligase 3 [Amphimedon queenslandica]
Length = 968
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
+EYA + RS+C+ C++KI KG R+ K+ N SD G G + WYH C
Sbjct: 9 VEYATTGRSSCKKCKSKIEKGVCRIGKITPNPFSDDG---GDMKVWYHSRCM 57
>gi|145353728|ref|XP_001421157.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581393|gb|ABO99450.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1086
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSK-MNYDSDQGKMIGGIPEWYHLSCFNA---VRLDL 107
EYAKS R C C KIAK +R+ + + Y +G G I +W H C+ A R +L
Sbjct: 36 EYAKSGRGKCGKCGEKIAKDAVRIGEPLKY---RGGDYGWISKWMHPECYRAEGVTREEL 92
Query: 108 EFSASGKQIPGFGSLEKKDQKIVEATLPS 136
E ++ G +L+ D++++ AT+ S
Sbjct: 93 E-----TRVHGLDALKDGDREVLLATVLS 116
>gi|344285688|ref|XP_003414592.1| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 3-like [Loxodonta
africana]
Length = 1014
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 151
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS V+ T + L T QV+
Sbjct: 152 RATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSRVASTPKKKAVVQAKLTATGQVT 210
>gi|328867984|gb|EGG16365.1| poly(ADP-ribosyl)transferase [Dictyostelium fasciculatum]
Length = 771
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC 99
IEY+KSNRS+C+GC+ IA ++RV +++ G WYHL C
Sbjct: 14 IEYSKSNRSSCKGCKKTIACDDMRVG---HETKSRLFDGYQVAWYHLKC 59
>gi|405958255|gb|EKC24400.1| DNA ligase 3 [Crassostrea gigas]
Length = 878
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 53 YAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVRLD 106
YAK S+C+ C+ KI KG +R+ K+ N SD+G G + +WYH C R
Sbjct: 10 YAKLGTSSCKKCKQKIDKGGLRIGKVVSNPFSDEG---GDMKQWYHPQCMFETLKRARAT 66
Query: 107 LEFSASGKQIPGFGSLEKKDQKIV 130
+ + GF +E+ D+ ++
Sbjct: 67 TKKIEEPDDLEGFTEIEQSDKDLI 90
>gi|17510487|ref|NP_491072.1| Protein PME-1 [Caenorhabditis elegans]
gi|57013011|sp|Q9N4H4.1|PME1_CAEEL RecName: Full=Poly(ADP-ribose) polymerase pme-1; AltName: Full=Poly
ADP-ribose metabolism enzyme 1
gi|351059483|emb|CCD73512.1| Protein PME-1 [Caenorhabditis elegans]
Length = 945
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 42/151 (27%)
Query: 1 SPFFDGKTPKWFHEECFW-KKNRPKALLDIHNVTS---LRHQDQEMIKSK---------- 46
S FFDG WFH CFW K R + ++I ++ LR +DQE ++ +
Sbjct: 42 STFFDGNMDSWFHYNCFWIKMIRGRDDINISSIRGVDWLRWEDQEKLRQEIQHFKTASPP 101
Query: 47 -----------ILGNIEYAK--SNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPE 93
IL I+ K SNR C C +GEI+ ++GK
Sbjct: 102 TLTPLCSTTTVILSTIKTEKSLSNRGKCGKCGQNFERGEIKA------HNKGKA------ 149
Query: 94 WYHLSCFNAVRLDLEFSASGKQIPGFGSLEK 124
H CF D + S + + IPG+ E+
Sbjct: 150 -NHFKCF-LQEFD-KISGTVEDIPGWADYEE 177
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
IEYAKS RS C+ C+ IA ++R+S MN S G + W+H +CF
Sbjct: 12 IEYAKSGRSNCKTCKKNIALDQLRMS-MNRPST--FFDGNMDSWFHYNCF 58
>gi|444707051|gb|ELW48360.1| Poly [ADP-ribose] polymerase 1 [Tupaia chinensis]
Length = 125
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
EYAK NRSTC+GC KI KG++R+ K + ++ + + + WYH S F
Sbjct: 15 AEYAKFNRSTCKGCVEKIEKGQMRLFKKMSNPEKPR-LSMVDCWYHQSYF 63
>gi|440799962|gb|ELR21005.1| Poly(ADPribose) polymerase and DNA-Ligase Zn-finger region domain
containing protein [Acanthamoeba castellanii str. Neff]
Length = 231
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 51 IEYAKSNRSTCRG--CEAK-IAKGEIRVSKMNYDS-DQGKMIGGIPEWYHLSC----FNA 102
+EYAK+ R++C+ C+ K I K +RV K++ + +G +W+HLSC +
Sbjct: 8 VEYAKTGRASCKNKPCKKKTIEKDSVRVGKVSPNPFSEGDTKT---DWFHLSCIFDQLSR 64
Query: 103 VRLDLEFSASGKQIPGFGSLEKKDQKIVEATL 134
R + S + GF L+KKDQ+ V+A +
Sbjct: 65 ARASTKKIESTDDLEGFDDLKKKDQQRVKALI 96
>gi|341885966|gb|EGT41901.1| hypothetical protein CAEBREN_31931 [Caenorhabditis brenneri]
Length = 915
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 26/102 (25%)
Query: 1 SPFFDGKTPKWFHEECFW----KKNRPKALLDIHNVTSLRHQDQEMIKSKI--------- 47
+ FFDG WFH CFW K + I V LR +DQE ++ +I
Sbjct: 7 ASFFDGNIDSWFHYPCFWLKLIKGQDEINISSIRGVDWLRWEDQEDLREQIKKFKEPYVY 66
Query: 48 -----------LGNI--EYAKSNRSTCRGCEAKIAKGEIRVS 76
L + E + +NR C C KGEI+V+
Sbjct: 67 VPRTSSINALSLSEMKAERSATNRGKCTKCSINFIKGEIKVN 108
>gi|408440830|ref|NP_001025345.2| DNA ligase 3 [Danio rerio]
Length = 1011
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC----FNAVRLD 106
+EYAK + C+ C+ KI KG +R+ K+ + + G + EWYH+ C R
Sbjct: 94 VEYAKRGTAGCKKCKDKIMKGLVRIGKI-VPNPFSESAGEMKEWYHVKCIFEKLERARAT 152
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKT 144
+ ++ G+ L+ +D+ ++ + L+ V+ T
Sbjct: 153 TKKIEDITELEGWEELQDEDKDLINKHVSELAAKVNST 190
>gi|407409684|gb|EKF32413.1| hypothetical protein MOQ_003736 [Trypanosoma cruzi marinkellei]
Length = 230
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 17/94 (18%)
Query: 51 IEYAKSNRSTCR--GCEAKIAKGEIRVSK---------MNYDSDQGKMIGGIPEWYHLSC 99
+EYAKS R C GC +IAK E+R+ +N ++ ++ +W HL C
Sbjct: 6 VEYAKSGRGKCSSSGCSQEIAKNEVRIGTAFLFPTPGGVNDEAGNERLS---YKWRHLCC 62
Query: 100 FNAVRLDLEFSASGK--QIPGFGSLEKKDQKIVE 131
F ++L+ ASG+ I G+ L DQ++V+
Sbjct: 63 FTEIQLE-NARASGEINSIDGYSDLAPADQELVD 95
>gi|410980492|ref|XP_003996611.1| PREDICTED: DNA ligase 3 isoform 2 [Felis catus]
Length = 1015
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 152
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 153 ATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKATSTPKKKAVVQAKLTATGQVT 210
>gi|410980490|ref|XP_003996610.1| PREDICTED: DNA ligase 3 isoform 1 [Felis catus]
Length = 996
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 152
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 153 ATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKATSTPKKKAVVQAKLTATGQVT 210
>gi|410914952|ref|XP_003970951.1| PREDICTED: DNA ligase 3-like [Takifugu rubripes]
Length = 983
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 23 PKALLDIHNVTSLRHQDQ-EMIKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYD 81
P+ L DI Q +M + + L +EYAK + C+ C+ KI KG +R+ K+
Sbjct: 40 PRLLRDIDTPPRQDFSSQADMAEQRFL--VEYAKRGTAGCKKCKDKIVKGIVRIGKI-VP 96
Query: 82 SDQGKMIGGIPEWYHLSCF 100
+ + G + EWYH+ C
Sbjct: 97 NPFSESAGEMKEWYHVKCI 115
>gi|410980494|ref|XP_003996612.1| PREDICTED: DNA ligase 3 isoform 3 [Felis catus]
Length = 1022
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 152
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 153 ATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKATSTPKKKAVVQAKLTATGQVT 210
>gi|338711026|ref|XP_001501551.3| PREDICTED: DNA ligase 3 [Equus caballus]
Length = 965
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 106 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 161
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 162 RATTKKIEDITELEGWEELEDNEKEQISQHIADLSSKAASTPKKKAVVQAKLTATGQVT 220
>gi|68533696|gb|AAH98869.1| Zgc:112973 [Danio rerio]
Length = 752
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC----FNAVRLD 106
+EYAK + C+ C+ KI KG +R+ K+ + + G + EWYH+ C R
Sbjct: 8 VEYAKRGTAGCKKCKDKIMKGLVRIGKI-VPNPFSESAGEMKEWYHVKCIFEKLERARAT 66
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKT 144
+ ++ G+ L+ +D+ ++ + L+ V+ T
Sbjct: 67 TKKIEDITELEGWEELQDEDKDLINKHVSELAAKVNST 104
>gi|431890909|gb|ELK01788.1| DNA ligase 3 [Pteropus alecto]
Length = 909
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 8 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCIFEKLERAR 64
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 65 ATTKKIEDLTELEGWEELEDNEKEQINQHITDLSSKTASTPKKKAVVQAKLTATGQVT 122
>gi|395849244|ref|XP_003797241.1| PREDICTED: DNA ligase 3 [Otolemur garnettii]
Length = 1008
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 151
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 152 ATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAASTPKKKAVVQAKLTTTGQVT 209
>gi|403283359|ref|XP_003933090.1| PREDICTED: DNA ligase 3 isoform 2 [Saimiri boliviensis boliviensis]
Length = 954
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSETG---GDMKEWYHIKCMFE-KLERA 150
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 151 RATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAASTPKKKAVVQAKLTTTGQVT 209
>gi|395536076|ref|XP_003770046.1| PREDICTED: DNA ligase 3 [Sarcophilus harrisii]
Length = 1003
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK ++C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C
Sbjct: 93 VDYAKRGTASCKKCKEKIVKGMCRIGKVVPNPFSESG---GDMKEWYHIKCM 141
>gi|403283357|ref|XP_003933089.1| PREDICTED: DNA ligase 3 isoform 1 [Saimiri boliviensis boliviensis]
Length = 1013
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSETG---GDMKEWYHIKCMFE-KLERA 150
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 151 RATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAASTPKKKAVVQAKLTTTGQVT 209
>gi|14290516|gb|AAH09026.1| LIG3 protein [Homo sapiens]
Length = 299
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 150
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 151 RATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 209
>gi|66802188|ref|XP_629877.1| SMAD/FHA domain-containing protein [Dictyostelium discoideum AX4]
gi|60463274|gb|EAL61466.1| SMAD/FHA domain-containing protein [Dictyostelium discoideum AX4]
Length = 895
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 51 IEYAKSNRSTCR--GCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF----NAVR 104
IEYA + RS+C+ C+ +I KG +R+ + + S++ + G +W+H +CF R
Sbjct: 8 IEYASTGRSSCKQAKCKKQIEKGAVRIGAI-FPSERFETDGVGTDWFHPNCFFEKQKKAR 66
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATL 134
+ + GF L K DQK +++ +
Sbjct: 67 KTTKKVDDIDDLIGFDDLSKSDQKNIKSKV 96
>gi|301776466|ref|XP_002923661.1| PREDICTED: DNA ligase 3-like [Ailuropoda melanoleuca]
Length = 996
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 152
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 153 ATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKATGTPKKKAVVQAKLTATGQVT 210
>gi|282165841|ref|NP_001016351.2| DNA ligase (ATP) 3 [Xenopus (Silurana) tropicalis]
gi|195539958|gb|AAI67946.1| Unknown (protein for MGC:136050) [Xenopus (Silurana) tropicalis]
Length = 893
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
+EYAK + C+ C+ KI KG +R+ K+ + + G + EWYH+ C
Sbjct: 63 VEYAKRGTAGCKKCKEKIGKGLVRIGKI-VPNPFSESAGDMKEWYHIKCM 111
>gi|281208598|gb|EFA82774.1| polyADP-ribosyltransferase [Polysphondylium pallidum PN500]
Length = 931
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 16/101 (15%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC-FNAVRLDLEF 109
+EY+KS+R+TC+ C+ I KG++R+ + + G W H+ C N V+ DLE
Sbjct: 9 VEYSKSDRATCKSCQRGIGKGDVRIG---HKTKSNHHDGMDVAWNHVKCKVNRVK-DLE- 63
Query: 110 SASGKQIPGFGSLEKKDQK-IVEATLPSLSDGVSKTDAISH 149
+ G+ L +DQK I++ P G K DA +
Sbjct: 64 -----ALKGWEVLRWEDQKDIIDKYFP----GSCKLDAATQ 95
>gi|18029884|gb|AAL56553.1|AF393655_1 DNA ligase III isoform beta [Xenopus laevis]
Length = 906
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
+EYAK + C+ C+ KI KG +R+ K+ + + G + EWYH+ C
Sbjct: 63 VEYAKRGTAGCKKCKEKIGKGLVRIGKI-VPNPFSESAGDMKEWYHIKCM 111
>gi|58865590|ref|NP_001012011.1| DNA ligase 3 [Rattus norvegicus]
gi|55249814|gb|AAH85959.1| Ligase III, DNA, ATP-dependent [Rattus norvegicus]
Length = 943
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 152
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 153 ATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKTAATPKKKATVQAKLTTTGQVT 210
>gi|346644723|ref|NP_001231032.1| DNA ligase 3 [Sus scrofa]
Length = 995
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 150
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 151 RATTKKIEDLTELEGWEELEDPEKEQISQHIADLSSKAASTPKKKAVVQAKLTATGQVT 209
>gi|296202009|ref|XP_002748408.1| PREDICTED: DNA ligase 3 isoform 2 [Callithrix jacchus]
Length = 954
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 150
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 151 RATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAASTPKKKAVVQAKLTTTGQVT 209
>gi|147901021|ref|NP_001082183.1| ligase III, DNA, ATP-dependent [Xenopus laevis]
gi|18029882|gb|AAL56552.1|AF393654_1 DNA ligase III isoform alpha [Xenopus laevis]
Length = 988
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
+EYAK + C+ C+ KI KG +R+ K+ + + G + EWYH+ C
Sbjct: 63 VEYAKRGTAGCKKCKEKIGKGLVRIGKI-VPNPFSESAGDMKEWYHIKCM 111
>gi|281341925|gb|EFB17509.1| hypothetical protein PANDA_012829 [Ailuropoda melanoleuca]
Length = 1015
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 152
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 153 ATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKATGTPKKKAVVQAKLTATGQVT 210
>gi|149053629|gb|EDM05446.1| rCG33581, isoform CRA_a [Rattus norvegicus]
Length = 956
Score = 42.4 bits (98), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 152
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 153 ATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKTAATPKKKATVQAKLTTTGQVT 210
>gi|281212108|gb|EFA86269.1| SMAD/FHA domain-containing protein [Polysphondylium pallidum PN500]
Length = 693
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 51 IEYAKSNRSTCRG--CEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC-FNA---VR 104
IEYAKS RS+C+ C+ I K IR++K+ Y S + + G +++H C F++ R
Sbjct: 8 IEYAKSGRSSCKAKQCKGNIPKETIRIAKV-YPSARFEDDGTAVDYFHPQCLFDSQVRAR 66
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATL 134
+ + + GF L KKDQ ++ L
Sbjct: 67 KTTKKVEEIEDLEGFEELSKKDQAAIKQML 96
>gi|73747844|ref|NP_002302.2| DNA ligase 3 isoform beta precursor [Homo sapiens]
gi|119600603|gb|EAW80197.1| ligase III, DNA, ATP-dependent, isoform CRA_a [Homo sapiens]
gi|311346379|gb|ADP89975.1| DNA ligase 3 [Homo sapiens]
gi|311346382|gb|ADP89977.1| DNA ligase 3 [Homo sapiens]
gi|311346385|gb|ADP89979.1| DNA ligase 3 [Homo sapiens]
gi|311346388|gb|ADP89981.1| DNA ligase 3 [Homo sapiens]
gi|311346391|gb|ADP89983.1| DNA ligase 3 [Homo sapiens]
gi|311346394|gb|ADP89985.1| DNA ligase 3 [Homo sapiens]
gi|311346397|gb|ADP89987.1| DNA ligase 3 [Homo sapiens]
gi|311346400|gb|ADP89989.1| DNA ligase 3 [Homo sapiens]
gi|311346403|gb|ADP89991.1| DNA ligase 3 [Homo sapiens]
gi|311346406|gb|ADP89993.1| DNA ligase 3 [Homo sapiens]
gi|311346409|gb|ADP89995.1| DNA ligase 3 [Homo sapiens]
gi|311346412|gb|ADP89997.1| DNA ligase 3 [Homo sapiens]
gi|311346415|gb|ADP89999.1| DNA ligase 3 [Homo sapiens]
gi|311346418|gb|ADP90001.1| DNA ligase 3 [Homo sapiens]
gi|311346421|gb|ADP90003.1| DNA ligase 3 [Homo sapiens]
gi|311346424|gb|ADP90005.1| DNA ligase 3 [Homo sapiens]
gi|311346427|gb|ADP90007.1| DNA ligase 3 [Homo sapiens]
gi|311346430|gb|ADP90009.1| DNA ligase 3 [Homo sapiens]
gi|311346433|gb|ADP90011.1| DNA ligase 3 [Homo sapiens]
gi|311346436|gb|ADP90013.1| DNA ligase 3 [Homo sapiens]
gi|311346439|gb|ADP90015.1| DNA ligase 3 [Homo sapiens]
gi|311346442|gb|ADP90017.1| DNA ligase 3 [Homo sapiens]
gi|311346445|gb|ADP90019.1| DNA ligase 3 [Homo sapiens]
gi|311346448|gb|ADP90021.1| DNA ligase 3 [Homo sapiens]
gi|311346451|gb|ADP90023.1| DNA ligase 3 [Homo sapiens]
gi|311346454|gb|ADP90025.1| DNA ligase 3 [Homo sapiens]
gi|311346457|gb|ADP90027.1| DNA ligase 3 [Homo sapiens]
gi|311346460|gb|ADP90029.1| DNA ligase 3 [Homo sapiens]
gi|311346463|gb|ADP90031.1| DNA ligase 3 [Homo sapiens]
gi|311346466|gb|ADP90033.1| DNA ligase 3 [Homo sapiens]
gi|311346469|gb|ADP90035.1| DNA ligase 3 [Homo sapiens]
gi|311346472|gb|ADP90037.1| DNA ligase 3 [Homo sapiens]
gi|311346475|gb|ADP90039.1| DNA ligase 3 [Homo sapiens]
gi|311346478|gb|ADP90041.1| DNA ligase 3 [Homo sapiens]
gi|311346481|gb|ADP90043.1| DNA ligase 3 [Homo sapiens]
gi|311346484|gb|ADP90045.1| DNA ligase 3 [Homo sapiens]
gi|311346487|gb|ADP90047.1| DNA ligase 3 [Homo sapiens]
gi|311346490|gb|ADP90049.1| DNA ligase 3 [Homo sapiens]
gi|311346493|gb|ADP90051.1| DNA ligase 3 [Homo sapiens]
gi|311346496|gb|ADP90053.1| DNA ligase 3 [Homo sapiens]
Length = 949
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 150
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 151 RATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 209
>gi|426348731|ref|XP_004041981.1| PREDICTED: DNA ligase 3 isoform 2 [Gorilla gorilla gorilla]
Length = 949
Score = 42.4 bits (98), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 150
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 151 RATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 209
>gi|149053630|gb|EDM05447.1| rCG33581, isoform CRA_b [Rattus norvegicus]
Length = 1015
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 152
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 153 ATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKTAATPKKKATVQAKLTTTGQVT 210
>gi|19550955|gb|AAL91592.1|AF491645_1 ligase III, DNA, ATP-dependent [Homo sapiens]
gi|1113939|gb|AAA85022.1| DNA ligase III [Homo sapiens]
Length = 862
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 8 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 64
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 65 ATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 122
>gi|410259056|gb|JAA17494.1| ligase III, DNA, ATP-dependent [Pan troglodytes]
Length = 949
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 151
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 152 ATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 209
>gi|348567741|ref|XP_003469657.1| PREDICTED: DNA ligase 3-like isoform 2 [Cavia porcellus]
Length = 939
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 94 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 150
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 151 ATTKKIEDLTELEGWEELEDSEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 208
>gi|332848016|ref|XP_003315567.1| PREDICTED: DNA ligase 3 isoform 1 [Pan troglodytes]
Length = 949
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 151
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 152 ATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 209
>gi|388452388|ref|NP_001252899.1| DNA ligase 3 [Macaca mulatta]
gi|355568415|gb|EHH24696.1| DNA ligase 3 [Macaca mulatta]
gi|380812704|gb|AFE78226.1| DNA ligase 3 isoform alpha precursor [Macaca mulatta]
gi|383418321|gb|AFH32374.1| DNA ligase 3 isoform alpha precursor [Macaca mulatta]
Length = 1009
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 150
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 151 RATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAASTPKKKAVVQAKLTTTGQVT 209
>gi|402899337|ref|XP_003912656.1| PREDICTED: DNA ligase 3 [Papio anubis]
Length = 1009
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 150
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 151 RATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAASTPKKKAVVQAKLTTTGQVT 209
>gi|410259054|gb|JAA17493.1| ligase III, DNA, ATP-dependent [Pan troglodytes]
Length = 1009
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 151
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 152 ATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 209
>gi|47506906|gb|AAH70993.1| LOC398275 protein [Xenopus laevis]
Length = 933
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
+EYAK + C+ C+ KI KG +R+ K+ + + G + EWYH+ C
Sbjct: 8 VEYAKRGTAGCKKCKEKIGKGLVRIGKI-VPNPFSESAGDMKEWYHIKCM 56
>gi|355753913|gb|EHH57878.1| DNA ligase 3 [Macaca fascicularis]
Length = 1009
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 151
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 152 ATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAASTPKKKAVVQAKLTTTGQVT 209
>gi|332848014|ref|XP_511409.3| PREDICTED: DNA ligase 3 isoform 2 [Pan troglodytes]
gi|410212976|gb|JAA03707.1| ligase III, DNA, ATP-dependent [Pan troglodytes]
gi|410306904|gb|JAA32052.1| ligase III, DNA, ATP-dependent [Pan troglodytes]
Length = 1009
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 151
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 152 ATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 209
>gi|355699358|gb|AES01101.1| ligase III, DNA, ATP-dependent [Mustela putorius furo]
Length = 598
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 151
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 152 RATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKATGTPKKKAVVQAKLTATGQVT 210
>gi|441677235|ref|XP_003278419.2| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 3 [Nomascus leucogenys]
Length = 1007
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSEAG---GDMKEWYHIKCMFE-KLERA 150
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+++ K ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 151 RASTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAIVQAKLTTTGQVT 209
>gi|860963|emb|CAA59230.1| DNA ligase III [Homo sapiens]
Length = 922
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 8 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 63
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 64 RATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 122
>gi|348567743|ref|XP_003469658.1| PREDICTED: DNA ligase 3-like isoform 3 [Cavia porcellus]
Length = 951
Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 94 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 150
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 151 ATTKKIEDLTELEGWEELEDSEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 208
>gi|410339187|gb|JAA38540.1| ligase III, DNA, ATP-dependent [Pan troglodytes]
Length = 1009
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 151
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 152 ATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 209
>gi|91076374|ref|XP_967954.1| PREDICTED: similar to rCG33581 [Tribolium castaneum]
gi|270002897|gb|EEZ99344.1| ligase III [Tribolium castaneum]
Length = 853
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDS-DQGKMIGGIPEWYHLSCFNAVRL 105
+E AK R+ C+ C+ K A+GE+R++K+ + +GKM W+H++C V L
Sbjct: 12 VEVAKQGRAVCKKCKQKCAQGELRIAKLVANPFGEGKM----KNWHHVNCLFEVFL 63
>gi|449479669|ref|XP_004177044.1| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 3 [Taeniopygia guttata]
Length = 896
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG +R+ K+ N ++ G G + EWYH+ C +LD +
Sbjct: 8 VDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNPFTESG---GDMKEWYHVKCIFE-KLD-K 62
Query: 109 FSASGKQIPGFGSLE 123
A+ K+I LE
Sbjct: 63 ARATTKKIEDITDLE 77
>gi|426348729|ref|XP_004041980.1| PREDICTED: DNA ligase 3 isoform 1 [Gorilla gorilla gorilla]
Length = 1009
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 151
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 152 ATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 209
>gi|73747829|ref|NP_039269.2| DNA ligase 3 isoform alpha precursor [Homo sapiens]
gi|251757259|sp|P49916.2|DNLI3_HUMAN RecName: Full=DNA ligase 3; AltName: Full=DNA ligase III; AltName:
Full=Polydeoxyribonucleotide synthase [ATP] 3
gi|45751619|gb|AAH68005.1| Ligase III, DNA, ATP-dependent [Homo sapiens]
gi|119600605|gb|EAW80199.1| ligase III, DNA, ATP-dependent, isoform CRA_c [Homo sapiens]
gi|311346378|gb|ADP89974.1| DNA ligase 3 [Homo sapiens]
gi|311346381|gb|ADP89976.1| DNA ligase 3 [Homo sapiens]
gi|311346384|gb|ADP89978.1| DNA ligase 3 [Homo sapiens]
gi|311346387|gb|ADP89980.1| DNA ligase 3 [Homo sapiens]
gi|311346390|gb|ADP89982.1| DNA ligase 3 [Homo sapiens]
gi|311346393|gb|ADP89984.1| DNA ligase 3 [Homo sapiens]
gi|311346396|gb|ADP89986.1| DNA ligase 3 [Homo sapiens]
gi|311346399|gb|ADP89988.1| DNA ligase 3 [Homo sapiens]
gi|311346402|gb|ADP89990.1| DNA ligase 3 [Homo sapiens]
gi|311346405|gb|ADP89992.1| DNA ligase 3 [Homo sapiens]
gi|311346408|gb|ADP89994.1| DNA ligase 3 [Homo sapiens]
gi|311346411|gb|ADP89996.1| DNA ligase 3 [Homo sapiens]
gi|311346414|gb|ADP89998.1| DNA ligase 3 [Homo sapiens]
gi|311346417|gb|ADP90000.1| DNA ligase 3 [Homo sapiens]
gi|311346420|gb|ADP90002.1| DNA ligase 3 [Homo sapiens]
gi|311346423|gb|ADP90004.1| DNA ligase 3 [Homo sapiens]
gi|311346426|gb|ADP90006.1| DNA ligase 3 [Homo sapiens]
gi|311346429|gb|ADP90008.1| DNA ligase 3 [Homo sapiens]
gi|311346432|gb|ADP90010.1| DNA ligase 3 [Homo sapiens]
gi|311346435|gb|ADP90012.1| DNA ligase 3 [Homo sapiens]
gi|311346438|gb|ADP90014.1| DNA ligase 3 [Homo sapiens]
gi|311346441|gb|ADP90016.1| DNA ligase 3 [Homo sapiens]
gi|311346444|gb|ADP90018.1| DNA ligase 3 [Homo sapiens]
gi|311346447|gb|ADP90020.1| DNA ligase 3 [Homo sapiens]
gi|311346450|gb|ADP90022.1| DNA ligase 3 [Homo sapiens]
gi|311346453|gb|ADP90024.1| DNA ligase 3 [Homo sapiens]
gi|311346456|gb|ADP90026.1| DNA ligase 3 [Homo sapiens]
gi|311346459|gb|ADP90028.1| DNA ligase 3 [Homo sapiens]
gi|311346462|gb|ADP90030.1| DNA ligase 3 [Homo sapiens]
gi|311346465|gb|ADP90032.1| DNA ligase 3 [Homo sapiens]
gi|311346468|gb|ADP90034.1| DNA ligase 3 [Homo sapiens]
gi|311346471|gb|ADP90036.1| DNA ligase 3 [Homo sapiens]
gi|311346474|gb|ADP90038.1| DNA ligase 3 [Homo sapiens]
gi|311346477|gb|ADP90040.1| DNA ligase 3 [Homo sapiens]
gi|311346480|gb|ADP90042.1| DNA ligase 3 [Homo sapiens]
gi|311346483|gb|ADP90044.1| DNA ligase 3 [Homo sapiens]
gi|311346486|gb|ADP90046.1| DNA ligase 3 [Homo sapiens]
gi|311346489|gb|ADP90048.1| DNA ligase 3 [Homo sapiens]
gi|311346492|gb|ADP90050.1| DNA ligase 3 [Homo sapiens]
gi|311346495|gb|ADP90052.1| DNA ligase 3 [Homo sapiens]
Length = 1009
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 151
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 152 ATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 209
>gi|71659481|ref|XP_821462.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70886843|gb|EAN99611.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 230
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 51 IEYAKSNRSTCR--GCEAKIAKGEIRV-SKMNYDSDQGKMIGGIPE-----WYHLSCFNA 102
+EYAKS R C GC +I K E+R+ + + + G+ E W HL CF
Sbjct: 6 VEYAKSGRGKCSSSGCSQEIVKNEVRIGTAFLFPAPGGEQNEAGNERLCYKWRHLCCFTD 65
Query: 103 VRLDLEFSASGK--QIPGFGSLEKKDQKIVE 131
++L+ ASG+ I G+ L DQ++VE
Sbjct: 66 IQLE-NARASGEINDIDGYSDLAPADQELVE 95
>gi|348567739|ref|XP_003469656.1| PREDICTED: DNA ligase 3-like isoform 1 [Cavia porcellus]
Length = 1010
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 94 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 150
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 151 ATTKKIEDLTELEGWEELEDSEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 208
>gi|326931314|ref|XP_003211777.1| PREDICTED: DNA ligase 3-like [Meleagris gallopavo]
Length = 658
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG +R+ K+ N ++ G G + EWYH+ C
Sbjct: 8 VDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNPFTESG---GDMKEWYHVKCM 56
>gi|345805757|ref|XP_548265.3| PREDICTED: DNA ligase 3 [Canis lupus familiaris]
Length = 1001
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHVKCMFEKLERAR 152
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 153 ATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKATGTPKKKAVVQAKLTATGQVT 210
>gi|291405585|ref|XP_002719279.1| PREDICTED: DNA ligase (ATP) 3 isoform 3 [Oryctolagus cuniculus]
Length = 952
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 152
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 153 ATTKKIEDLTELEGWEELEDNEKEQITQHITDLSSKAASTPKKKAVVQAKLTSTGQVT 210
>gi|345314427|ref|XP_001516858.2| PREDICTED: DNA ligase 3-like, partial [Ornithorhynchus anatinus]
Length = 235
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KIAKG R+ K+ N S+ G G + EWYH+ C
Sbjct: 35 VDYAKRGTAGCKKCKDKIAKGACRIGKVVPNPFSESG---GDMKEWYHVRCV 83
>gi|291405583|ref|XP_002719278.1| PREDICTED: DNA ligase (ATP) 3 isoform 2 [Oryctolagus cuniculus]
Length = 1011
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 152
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 153 ATTKKIEDLTELEGWEELEDNEKEQITQHITDLSSKAASTPKKKAVVQAKLTSTGQVT 210
>gi|291405581|ref|XP_002719277.1| PREDICTED: DNA ligase (ATP) 3 isoform 1 [Oryctolagus cuniculus]
Length = 1012
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 152
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 153 ATTKKIEDLTELEGWEELEDNEKEQITQHITDLSSKAASTPKKKAVVQAKLTSTGQVT 210
>gi|57525295|ref|NP_001006215.1| DNA ligase 3 [Gallus gallus]
gi|53128173|emb|CAG31277.1| hypothetical protein RCJMB04_4j11 [Gallus gallus]
Length = 902
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG +R+ K+ N ++ G G + EWYH+ C
Sbjct: 8 VDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNPFTESG---GDMKEWYHVKCM 56
>gi|119600604|gb|EAW80198.1| ligase III, DNA, ATP-dependent, isoform CRA_b [Homo sapiens]
Length = 649
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 150
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 151 RATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 209
>gi|297700536|ref|XP_002827303.1| PREDICTED: DNA ligase 3 isoform 3 [Pongo abelii]
Length = 949
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 151
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 152 ATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 209
>gi|167522421|ref|XP_001745548.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775897|gb|EDQ89519.1| predicted protein [Monosiga brevicollis MX1]
Length = 1132
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYD--SDQGKMIGGIPEWYHLSCFNAVRL 105
E+AK+ RS C+ C+ KI KG +R+ K+ SD M WYH CF +L
Sbjct: 84 EHAKTGRSGCKECKQKIDKGALRIGKVTTSPFSDDSDMT----TWYHDECFFQAQL 135
Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 1 SPFFD-GKTPKWFHEECFWKKN--------RPKALLDIHNVTSLRHQDQEMIKSKILGNI 51
SPF D W+H+ECF++ + + L DI N L +D++ +K+KI +
Sbjct: 113 SPFSDDSDMTTWYHDECFFQAQLRSRKTTAKVETLSDIKNYAELSAEDKQSLKTKIAAFV 172
Query: 52 E 52
E
Sbjct: 173 E 173
>gi|145478883|ref|XP_001425464.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392534|emb|CAK58066.1| unnamed protein product [Paramecium tetraurelia]
Length = 94
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 48 LGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
L + Y+ SNRS CR C KIA+ IR+ Y +G I +WYH CF L
Sbjct: 3 LIQVTYSPSNRSCCRNCYEKIAENTIRIG---YYVKKGGGYTNI-QWYHEKCFTKANL-- 56
Query: 108 EFSASGKQIPGFGSLEKKDQKIVEATLPSL 137
+ + ++ G L +D+ V+ ++
Sbjct: 57 -WGVTDIELTGLEELSGQDRLRVKEKFEAI 85
>gi|297700534|ref|XP_002827302.1| PREDICTED: DNA ligase 3 isoform 2 [Pongo abelii]
Length = 1009
Score = 42.0 bits (97), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 95 VDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 150
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS + T + L T QV+
Sbjct: 151 RATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVT 209
>gi|47214654|emb|CAG00890.1| unnamed protein product [Tetraodon nigroviridis]
Length = 873
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC----FNAVRLD 106
+EYAK + C+ C+ KI KG +R+ K+ + + G + EWYH+ C R
Sbjct: 8 VEYAKRGTAGCKKCKDKIVKGIVRIGKI-VPNPFSESAGEMKEWYHVKCIFEKLERARAT 66
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKT 144
+ ++ G+ L+ +D+ +++ + L V+ +
Sbjct: 67 TKKIEDLTELEGWEELQDEDKNLIKEHISELMAKVNAS 104
>gi|268565915|ref|XP_002639584.1| C. briggsae CBR-PME-1 protein [Caenorhabditis briggsae]
Length = 936
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 24/99 (24%)
Query: 1 SPFFDGKTPKWFHEECFWKK----NRPKALLDIHNVTSLRHQDQEMIKSKI--------- 47
S FFDG WFH ECFW+ + I V LR +DQE ++ ++
Sbjct: 42 SIFFDGTMDSWFHFECFWQNLAHGRHEINISSIKGVDWLRWEDQERLRDRVQKFRDPHFP 101
Query: 48 ---------LGNIEYAKS--NRSTCRGCEAKIAKGEIRV 75
L ++ KS NR C C K EI+V
Sbjct: 102 PKLYFNTVSLSALKTDKSATNRGKCVKCGVNFEKDEIKV 140
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 11/55 (20%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRVS----KMNYDSDQGKMIGGIPEWYHLSCF 100
++EYAKS RSTC+ C+ I ++R+S + +D G + W+H CF
Sbjct: 11 SVEYAKSARSTCKKCKKYINIEQLRMSLHQPSIFFD-------GTMDSWFHFECF 58
>gi|432901473|ref|XP_004076853.1| PREDICTED: DNA ligase 3-like [Oryzias latipes]
Length = 1011
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 41 EMIKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
EM + L +EYAK + C+ C+ KI KG +R+ K+ + + G + EWYH+ C
Sbjct: 88 EMADQRFL--VEYAKRGTAGCKKCKDKIQKGIVRIGKI-VPNPFSESAGEMKEWYHVKCI 144
>gi|417411773|gb|JAA52313.1| Putative atp-dependent dna ligase iii, partial [Desmodus rotundus]
Length = 583
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 97 VDYAKRSTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GEMKEWYHIKCMFE-KLERA 152
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ + K ++ G+ LE +++ + + LS T + L T QV+
Sbjct: 153 RATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKAGSTPKKKAVVQARLTATGQVT 211
>gi|307184383|gb|EFN70797.1| DNA ligase 3 [Camponotus floridanus]
Length = 925
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 6/52 (11%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSK--MNYDSDQGKMIGGIPEWYHLSCF 100
+E AK+ R+ C+ C+ I KGEIR+ K ++ +D GK+ +P W+H++C
Sbjct: 20 VERAKTGRAKCKRCKCVIEKGEIRIGKYVTSFFAD-GKL---MPAWHHVTCL 67
>gi|449456575|ref|XP_004146024.1| PREDICTED: polynucleotide 3'-phosphatase ZDP-like [Cucumis sativus]
Length = 387
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKSNRSTC+ C I +R+ + D M W+H C +
Sbjct: 46 EYAKSNRSTCKNCSKTIPASTLRLGFVTRDGRGFDMT----RWFHSDC---ASFGPRPVS 98
Query: 112 SGKQIPGFGSLEKKDQKIV 130
S + I GF L+ DQ+ +
Sbjct: 99 SAEDINGFALLKDSDQEAL 117
>gi|449516760|ref|XP_004165414.1| PREDICTED: polynucleotide 3'-phosphatase ZDP-like [Cucumis sativus]
Length = 387
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKSNRSTC+ C I +R+ + D M W+H C +
Sbjct: 46 EYAKSNRSTCKNCSKTIPASTLRLGFVTRDGRGFDMT----RWFHSDC---ASFGPRPVS 98
Query: 112 SGKQIPGFGSLEKKDQKIV 130
S + I GF L+ DQ+ +
Sbjct: 99 SAEDINGFALLKDSDQEAL 117
>gi|118388428|ref|XP_001027311.1| Poly polymerase and DNA-Ligase Zn-finger region family protein
[Tetrahymena thermophila]
gi|89309081|gb|EAS07069.1| Poly polymerase and DNA-Ligase Zn-finger region family protein
[Tetrahymena thermophila SB210]
Length = 323
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
+YA S+R+ C+GC+ KI K E+R+ QG+ W HL CF+ R +
Sbjct: 9 DYASSSRAGCKGCKMKIQKNELRIGLETL--FQGEHT--TTSWRHLECFSLGRKYKDIDP 64
Query: 112 SGKQIPGFGSLEKKDQKIV 130
K+I G+ L+K+D+ V
Sbjct: 65 --KEIEGYYDLKKEDKARV 81
>gi|348531984|ref|XP_003453487.1| PREDICTED: DNA ligase 3 [Oreochromis niloticus]
Length = 1012
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC----FNAVRLD 106
+EYAK + C+ C+ KI KG +R+ K+ + + G + EWYH+ C R
Sbjct: 97 VEYAKRGTAGCKKCKDKIQKGIVRIGKI-VPNPFSESAGEMKEWYHVKCIFEKLERARAT 155
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDA 146
+ + G+ L+ D++I+ +SD ++K +A
Sbjct: 156 TKKIEDITDLEGWEELQDDDKEIINK---HVSDLMAKVNA 192
>gi|334324598|ref|XP_001373823.2| PREDICTED: DNA ligase 3 [Monodelphis domestica]
Length = 1217
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C
Sbjct: 97 VDYAKRGTAGCKKCKEKIVKGTCRIGKVMPNPFSESG---GDMKEWYHIKCM 145
>gi|444720955|gb|ELW61715.1| DNA ligase 3 [Tupaia chinensis]
Length = 926
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C R
Sbjct: 8 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFEKLERAR 64
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIVE---ATLPSLSDGVSKTDAI 147
+ ++ G+ LE +++ + A L S + G K A+
Sbjct: 65 ATTKRIEDLTELEGWEELEDNEKEQINQHIADLSSKATGTPKKKAV 110
>gi|290982408|ref|XP_002673922.1| poly(ADP-ribose) synthetase [Naegleria gruberi]
gi|284087509|gb|EFC41178.1| poly(ADP-ribose) synthetase [Naegleria gruberi]
Length = 969
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 42 MIKSKILGN--IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC 99
M + ++G+ +EY+KSNRSTC+ I K +R+ K+ G P WY+
Sbjct: 1 MSEKPVVGDYSVEYSKSNRSTCKLTNKTIKKDALRIGKI---VQSQSFDGTYPIWYNFED 57
Query: 100 F-NAVRLDLEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVS 142
+ +L EF K++ G + +DQ+ ++ + SD +
Sbjct: 58 WAKDKKLVKEFQTKCKKVHGLSKIRLEDQERIKKLMGQSSDDAN 101
>gi|1794223|gb|AAC53004.1| DNA ligase III-alpha [Mus musculus]
Length = 1015
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCM 144
>gi|440902828|gb|ELR53569.1| DNA ligase 3 [Bos grunniens mutus]
Length = 1002
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C
Sbjct: 94 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCM 142
>gi|426238631|ref|XP_004013253.1| PREDICTED: DNA ligase 3 [Ovis aries]
Length = 885
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C
Sbjct: 94 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSEAG---GDMKEWYHIKCM 142
>gi|1794221|gb|AAC53003.1| DNA ligase III-beta [Mus musculus]
Length = 956
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCM 144
>gi|301121538|ref|XP_002908496.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262103527|gb|EEY61579.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 226
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 33 TSLRHQDQEMIKSKILG----NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQG 85
T+L D +++ ++ ++E AKS RS CR CE I KG +RV KM + G
Sbjct: 160 TNLLKADMKLLDRRLAAFADVDVELAKSGRSKCRTCEEAIDKGAVRVGKMAKTTVAG 216
>gi|71061470|ref|NP_034846.2| DNA ligase 3 [Mus musculus]
gi|29165722|gb|AAH49240.1| Ligase III, DNA, ATP-dependent [Mus musculus]
gi|53733359|gb|AAH83500.1| Ligase III, DNA, ATP-dependent [Mus musculus]
gi|74138035|dbj|BAE25421.1| unnamed protein product [Mus musculus]
gi|148683722|gb|EDL15669.1| ligase III, DNA, ATP-dependent, isoform CRA_a [Mus musculus]
Length = 1012
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCM 144
>gi|341940451|sp|P97386.2|DNLI3_MOUSE RecName: Full=DNA ligase 3; AltName: Full=DNA ligase III; AltName:
Full=Polydeoxyribonucleotide synthase [ATP] 3
Length = 1015
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCM 144
>gi|407849109|gb|EKG03955.1| hypothetical protein TCSYLVIO_004984 [Trypanosoma cruzi]
Length = 230
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 51 IEYAKSNRSTCR--GCEAKIAKGEIRVSKM------NYDSDQGKMIGGIPEWYHLSCFNA 102
+EYAKS R C GC +I K E+R+ D+ +W HL CF
Sbjct: 6 VEYAKSGRGKCSSSGCSQEIVKNEVRIGTAFLFPTPGGVQDEAGNERLCYKWRHLCCFTH 65
Query: 103 VRLDLEFSASGK--QIPGFGSLEKKDQKIVE 131
++L+ ASG+ I G+ L DQ++VE
Sbjct: 66 IQLE-NARASGEINDIDGYSDLAPADQELVE 95
>gi|148683723|gb|EDL15670.1| ligase III, DNA, ATP-dependent, isoform CRA_b [Mus musculus]
Length = 953
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCM 144
>gi|74151892|dbj|BAE29732.1| unnamed protein product [Mus musculus]
Length = 1011
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCM 144
>gi|296477017|tpg|DAA19132.1| TPA: DNA ligase (ATP) 3 [Bos taurus]
Length = 943
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C
Sbjct: 94 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCM 142
>gi|260841228|ref|XP_002613830.1| hypothetical protein BRAFLDRAFT_119901 [Branchiostoma floridae]
gi|229299220|gb|EEN69839.1| hypothetical protein BRAFLDRAFT_119901 [Branchiostoma floridae]
Length = 928
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC----FNAVR 104
+EYAK R+ C+ C+ KI KG R+ K+ N+ + G + +WYH++C F R
Sbjct: 15 VEYAKQGRAGCKKCKQKIEKGLPRIGKIVPNFFHEGD---GEMKQWYHVACIFETFQRAR 71
Query: 105 LDLEFSASGKQIPGFGSLEKKDQKIV 130
+ + G+ +E ++++ +
Sbjct: 72 ATTKKIEDASDLEGWEDMEDEEKQTI 97
>gi|84000185|ref|NP_001033196.1| DNA ligase 3 [Bos taurus]
gi|83406113|gb|AAI11208.1| Ligase III, DNA, ATP-dependent [Bos taurus]
Length = 943
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C
Sbjct: 94 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCM 142
>gi|74191265|dbj|BAE39460.1| unnamed protein product [Mus musculus]
Length = 431
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCM 144
>gi|157880447|pdb|1UW0|A Chain A, Solution Structure Of The Zinc-Finger Domain From Dna
Ligase Iiia
Length = 117
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C +L+
Sbjct: 8 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCMFE-KLERA 63
Query: 109 FSASGK-----QIPGFGSLEKKDQKIVE---ATLPSLSDGVSKTDAISHFLL 152
+ + K ++ G+ LE +++ + A L S + G K A+ L
Sbjct: 64 RATTKKIEDLTELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKL 115
>gi|332020243|gb|EGI60679.1| DNA ligase 3 [Acromyrmex echinatior]
Length = 269
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 38 QDQEMIKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSK--MNYDSDQGKMIGGIPEWY 95
+DQ+ + +E AK+ R+ C+ C+ I K EIR++K ++ SD GK+ +P W+
Sbjct: 6 EDQQQQGEEKPFTVERAKTGRAKCKRCKCPIEKDEIRIAKYVASFFSD-GKL---MPAWH 61
Query: 96 HLSC----FNAVRLDLE-FSASGKQIPGFGSLEKKDQKIV 130
H++C F R + + + G+ L D+K++
Sbjct: 62 HVTCLFEAFAKQRASTKRIEDPAEDVKGWEQLSDDDKKVI 101
>gi|351702200|gb|EHB05119.1| DNA ligase 3 [Heterocephalus glaber]
Length = 1013
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGICRIGKVVPNPFSESG---GDMKEWYHIKCM 144
>gi|442760155|gb|JAA72236.1| Putative atp-dependent dna ligase iii [Ixodes ricinus]
Length = 146
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
IEYAK + C+ C+AKI K +R++K+ N SD G G + +W+H+ C
Sbjct: 8 IEYAKRGTAGCKKCKAKIDKEVLRIAKIVPNPFSDSG---GDMKQWFHVDCI 56
>gi|308810895|ref|XP_003082756.1| SNF2 domain-containing protein / helicase domain-containing protein
/ RING finger domain-containing protein (ISS)
[Ostreococcus tauri]
gi|116061225|emb|CAL56613.1| SNF2 domain-containing protein / helicase domain-containing protein
/ RING finger domain-containing protein (ISS), partial
[Ostreococcus tauri]
Length = 1008
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSK-MNYDSDQGKMIGGIPEWYHLSCFN---AVRLDL 107
EYAKS R C C KIAK +RV + + Y +G G I +W H C+ A R +L
Sbjct: 120 EYAKSGRGKCGRCGEKIAKDTVRVGEPLKY---RGGDYGWISKWMHPECYRAEGATREEL 176
Query: 108 EFSASG 113
E S G
Sbjct: 177 ERSVYG 182
>gi|348670101|gb|EGZ09923.1| hypothetical protein PHYSODRAFT_288524 [Phytophthora sojae]
Length = 105
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
IE + + C+ C+A I G +RV + Y G + W+H+ C+ AVR
Sbjct: 13 IEATRKAHACCKSCDATIEAGRLRVGVV-YQHRNGFVCIN---WHHVECYKAVR-----Q 63
Query: 111 ASGKQIPGFGSLEKKDQKIVEAT 133
K + G+ L+ + QK+VE+
Sbjct: 64 IPLKCLEGYSDLDPQQQKLVESC 86
>gi|118364858|ref|XP_001015650.1| hypothetical protein TTHERM_00077090 [Tetrahymena thermophila]
gi|89297417|gb|EAR95405.1| hypothetical protein TTHERM_00077090 [Tetrahymena thermophila
SB210]
Length = 231
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
E AKSN+S C+GC+ I +G +R+ Y ++ I +WYH SC
Sbjct: 15 ELAKSNKSECKGCQKTIDQGTLRIGHTVYFDEEHTHIN--KKWYHPSCL 61
>gi|213625719|gb|AAI71190.1| ligase III, DNA, ATP-dependent [Xenopus (Silurana) tropicalis]
gi|213626103|gb|AAI71192.1| ligase III, DNA, ATP-dependent [Xenopus (Silurana) tropicalis]
Length = 111
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
+EYAK + C+ C+ KI KG +R+ K+ N S+ G + EWYH+ C
Sbjct: 8 VEYAKRGTAGCKKCKEKIGKGLVRIGKIVPNPFSESA---GDMKEWYHIKCM 56
>gi|110761354|ref|XP_396537.3| PREDICTED: DNA ligase 3 [Apis mellifera]
Length = 1009
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDS-DQGKMIGGIPEWYHLSCFNAVRLDLEF 109
+E AKS R+ C+ C+ I K +R++K+ + GKM W+HL+C V
Sbjct: 11 VERAKSGRAKCKKCKCPIEKDTVRIAKLVANPFTDGKMKA----WHHLTCLFEVFAKQRA 66
Query: 110 SAS-----GKQIPGFGSLEKKDQKIV 130
S + + G+ L K+D+ IV
Sbjct: 67 STKRIDDPAEDVSGWEDLSKEDRAIV 92
>gi|110331839|gb|ABG67025.1| ligase III, DNA, ATP-dependent precursor [Bos taurus]
Length = 321
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ N S+ G G + EWYH+ C
Sbjct: 94 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESG---GDMKEWYHIKCM 142
>gi|168022368|ref|XP_001763712.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685205|gb|EDQ71602.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 106
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC 99
EYAKS+RS+CR C I K R++K+ + G +P W H SC
Sbjct: 15 EYAKSSRSSCRACNKPIVKDAFRLAKVQ---TAHQFNGVMPLWNHASC 59
>gi|383847368|ref|XP_003699326.1| PREDICTED: DNA ligase 3 [Megachile rotundata]
Length = 979
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDS-DQGKMIGGIPEWYHLSCFNAVRLDLEF 109
+E AKS R+ C+ C+ I K +R++K+ + +GKM W+HLSC V
Sbjct: 83 VERAKSGRAKCKKCKCPIEKDTVRIAKLMANPFAEGKMKA----WHHLSCLFEVFAKQRA 138
Query: 110 SASGKQIP-----GFGSLEKKDQKIV 130
+ + P G+ L+++D+K V
Sbjct: 139 TTKRIEDPEEDVSGWEELDEEDKKTV 164
>gi|303283968|ref|XP_003061275.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457626|gb|EEH54925.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 235
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLD--LE 108
IE+AKS RS CR C+ IAK +R + + + W HL C + LE
Sbjct: 7 IEHAKSGRSNCRKCKDPIAKDALRWGSITTRDEHDQTY-----WSHLGCVTEKQFTNALE 61
Query: 109 FSASGKQIPGFGSLE 123
S ++IPG G E
Sbjct: 62 SYESLREIPGVGDDE 76
>gi|449276747|gb|EMC85168.1| Poly [ADP-ribose] polymerase 1, partial [Columba livia]
Length = 872
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 64 CEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF--SASGKQIPGFGS 121
C + +G+IR+SK ++ ++ G I WYH CF + R +L F Q+ GF
Sbjct: 1 CCFNLPQGQIRISKKMVHPEKPQL-GMIDNWYHPDCFVSRRAELGFLPVYGATQLLGFSI 59
Query: 122 LEKKDQKIVEATLPSL-SDGVSKTDAI 147
L+ +D++ ++ LP+ S+G K + +
Sbjct: 60 LKAEDKETLKKQLPATKSEGKRKGEEV 86
>gi|145495555|ref|XP_001433770.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400890|emb|CAK66373.1| unnamed protein product [Paramecium tetraurelia]
Length = 135
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 43 IKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102
+K K EYA SNR C C I K E+++ + D+G+ WYHL C
Sbjct: 1 MKMKQFLECEYALSNRIKCATCHVVIFKNELKIGHVYLKKDEGQQFDK-KVWYHLHCIKK 59
Query: 103 VRLDLEFSASGKQIPGF--GSLEKKDQKIVEATLPSLSD 139
G+++P F +++ +DQ ++ SL D
Sbjct: 60 ----WPTGEKGQELPLFRLQTIKLEDQLKIKDLYRSLQD 94
>gi|395332726|gb|EJF65104.1| hypothetical protein DICSQDRAFT_159356 [Dichomitus squalens
LYAD-421 SS1]
Length = 1226
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EY+KS+R+TC G A I + + Y G EW H C L +A
Sbjct: 8 EYSKSSRATCHG-PAPCKGSPIELGSLRYGQVSAGKYGETVEWRHWGCVTPDILTKLAAA 66
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDA 146
+ +PGF +L DQ + L+ G+ + D+
Sbjct: 67 KLETVPGFSNLSPADQSKIR-----LAVGLGRIDS 96
>gi|66828935|ref|XP_647821.1| hypothetical protein DDB_G0278741 [Dictyostelium discoideum AX4]
gi|60469991|gb|EAL67972.1| hypothetical protein DDB_G0278741 [Dictyostelium discoideum AX4]
Length = 938
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC 99
IEYAKS+RSTC C+ I K +R+ Y + G W+HL C
Sbjct: 11 IEYAKSDRSTCSTCQRGINKEAVRIG---YKTKSKHFDGMDVSWHHLKC 56
>gi|31744938|emb|CAD59237.1| NAD(+) ADP-ribosyltransferase-1A [Dictyostelium discoideum]
Length = 938
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC 99
IEYAKS+RSTC C+ I K +R+ Y + G W+HL C
Sbjct: 11 IEYAKSDRSTCSTCQRGINKEAVRIG---YKTKSKHFDGMDVSWHHLKC 56
>gi|237841711|ref|XP_002370153.1| poly(ADP)-ribose polymerase domain-containing protein [Toxoplasma
gondii ME49]
gi|95007203|emb|CAJ20424.1| hypothetical protein TgIa.1720 [Toxoplasma gondii RH]
gi|211967817|gb|EEB03013.1| poly(ADP)-ribose polymerase domain-containing protein [Toxoplasma
gondii ME49]
gi|221482618|gb|EEE20956.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221503188|gb|EEE28894.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 410
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 18/91 (19%)
Query: 41 EMIKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMN-------------YDSDQGKM 87
+M +I+ + EYA S R+ CR C + I KG++R++ + S Q +
Sbjct: 34 KMPAKEIVFHCEYAPSGRARCRVCSSSIPKGQLRLATSQPFAEPSLGDTEDVHVSKQRTI 93
Query: 88 IGGIPEWYHLSCFNAVRLD--LEFSASGKQI 116
P W H +CF R D LE A KQ+
Sbjct: 94 AAEAPRWCHANCF---RYDPRLERHAGIKQM 121
>gi|336371699|gb|EGO00039.1| hypothetical protein SERLA73DRAFT_167889 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1106
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 51 IEYAKSNRSTCRG---CEAK-IAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLD 106
++Y+KS+R+TC+G C+ I G +R ++ + G M+ EW H C + L
Sbjct: 1 MKYSKSSRATCKGPLPCKGTPILAGNLRYGQV-VSGEYGDMV----EWRHWGCVTPIILG 55
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATL 134
+ + + I G+ SL+ +DQ+ V +
Sbjct: 56 ALSAQNPRNIKGYDSLKSEDQQKVRRAI 83
>gi|336384460|gb|EGO25608.1| hypothetical protein SERLADRAFT_448570 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1148
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 51 IEYAKSNRSTCRG---CEAK-IAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLD 106
++Y+KS+R+TC+G C+ I G +R ++ + G M+ EW H C + L
Sbjct: 1 MKYSKSSRATCKGPLPCKGTPILAGNLRYGQV-VSGEYGDMV----EWRHWGCVTPIILG 55
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATL 134
+ + + I G+ SL+ +DQ+ V +
Sbjct: 56 ALSAQNPRNIKGYDSLKSEDQQKVRRAI 83
>gi|167390311|ref|XP_001739295.1| poly [ADP-ribose] polymerase [Entamoeba dispar SAW760]
gi|165897069|gb|EDR24337.1| poly [ADP-ribose] polymerase, putative [Entamoeba dispar SAW760]
Length = 1573
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EY KSNR C C+ +A+G+++V S G EWYHL C A ++ S+
Sbjct: 9 EYCKSNRGCCSSCKTMLAEGKLKVGMEVVSSRHD---GFDIEWYHLECVPAQFKTIKLSS 65
Query: 112 SGKQIPGFGSLEKKD-QKIVEATLPSL 137
+ G+ L KD Q+I ++ + L
Sbjct: 66 T----KGWDVLRWKDIQRIRQSCIDDL 88
>gi|350407883|ref|XP_003488227.1| PREDICTED: DNA ligase 3-like [Bombus impatiens]
Length = 1012
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAV 103
+E AKS R+ C+ C+ I K +R++K+ N SD G + W+HLSC V
Sbjct: 16 VERAKSGRAKCKKCKCPIEKDTVRIAKLVANPFSD-----GKMKAWHHLSCLFEV 65
>gi|66815411|ref|XP_641722.1| hypothetical protein DDB_G0279195 [Dictyostelium discoideum AX4]
gi|60469759|gb|EAL67746.1| hypothetical protein DDB_G0279195 [Dictyostelium discoideum AX4]
Length = 804
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EY+KS RS+C+ C+ I IRV ++ G ++YHLSC + +L + +
Sbjct: 16 VEYSKSARSSCKKCKGTIGMDTIRVGT---ETPSRVFDGYDVKYYHLSCMDFPKLKIFYI 72
Query: 111 ASGKQIPGFGSLEKKDQKIVEATLPSLSDGVS 142
Q+ + L DQ + L DG++
Sbjct: 73 ---NQLKHYELLRWDDQLKIRKILGQTDDGLN 101
>gi|384487200|gb|EIE79380.1| hypothetical protein RO3G_04085 [Rhizopus delemar RA 99-880]
Length = 214
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA----VRLD 106
IEYAK+ +S C C+ I +R +++ S + K WYH C+ R+
Sbjct: 15 IEYAKTQQSKCDSCKKIIPNKSLRAAEIYRKSPKEKKNLARHTWYHFKCWKVPTLLTRIP 74
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATL 134
+E Q G+ +L+ KD+ V+ +
Sbjct: 75 IE------QFRGYPTLQDKDKARVQKVI 96
>gi|340721941|ref|XP_003399371.1| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 3-like [Bombus
terrestris]
Length = 1013
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCFNAV 103
+E AKS R+ C+ C+ I K +R++K+ N SD G + W+HLSC V
Sbjct: 16 VERAKSGRAKCKKCKCPIEKDTVRIAKLVANPFSD-----GKMKAWHHLSCLFEV 65
>gi|27227739|emb|CAD59238.1| NAD(+) ADP-ribosyltransferase-1B [Dictyostelium discoideum]
Length = 804
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EY+KS RS+C+ C+ I IRV ++ G ++YHLSC + +L + +
Sbjct: 16 VEYSKSARSSCKKCKGTIGMDTIRVGT---ETPSRVFDGYDVKYYHLSCMDFPKLKIFYI 72
Query: 111 ASGKQIPGFGSLEKKDQKIVEATLPSLSDGVS 142
Q+ + L DQ + L DG++
Sbjct: 73 ---NQLKHYELLRWDDQLKIRKILGQTDDGLN 101
>gi|74217593|dbj|BAE33548.1| unnamed protein product [Mus musculus]
Length = 1011
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ N S G G + EWYH+ C
Sbjct: 96 VDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSVSG---GDMKEWYHIKCM 144
>gi|328870016|gb|EGG18391.1| poly(ADP-ribosyl)transferase [Dictyostelium fasciculatum]
Length = 949
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 23/26 (88%)
Query: 50 NIEYAKSNRSTCRGCEAKIAKGEIRV 75
+IEY+KS+RSTC+ C + ++KGE+RV
Sbjct: 9 SIEYSKSDRSTCKNCGSGLSKGELRV 34
>gi|325182361|emb|CCA16814.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 103
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
IE + +S CR CE+ I G +R+ + Y G + EW+H+ C+ V S
Sbjct: 14 IESTRCTQSCCRSCESTIQNGLLRIGVV-YQHQNGFV---CIEWHHVLCYPHVG-----S 64
Query: 111 ASGKQIPGFGSLEKKDQKIV----EATLPSLSDGV 141
K + GF L DQ ++ E+ L S G+
Sbjct: 65 IPLKCLDGFNKLSSYDQYVILKLRESALREQSTGI 99
>gi|303278366|ref|XP_003058476.1| SNF2 super family [Micromonas pusilla CCMP1545]
gi|226459636|gb|EEH56931.1| SNF2 super family [Micromonas pusilla CCMP1545]
Length = 1251
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 24/103 (23%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVS-KMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEF 109
+E AKS R+ CR C IAK +RV + + +G M G I W H +C
Sbjct: 31 VEIAKSGRARCRRCSELIAKDTVRVGVPIKW---RGGMFGWISSWQHPACL--------- 78
Query: 110 SASGKQIPGFG------SLEKKDQKIVEATLPSLSDGVSKTDA 146
++PG+ S+ + EA L SL D ++ +A
Sbjct: 79 -----RVPGYTRDELSESIHGAKTLLTEAQLESLLDELTNPEA 116
>gi|301113494|ref|XP_002998517.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262111818|gb|EEY69870.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 124
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
IE + + C+ C+ I G +RV + Y G + W+H+ C+ +VR
Sbjct: 33 IEATRKAHACCKSCDVTIEAGRLRVGVV-YQHRNGFVCIN---WHHVECYKSVR-----Q 83
Query: 111 ASGKQIPGFGSLEKKDQKIVE 131
K + GF L+ + QK+VE
Sbjct: 84 IPLKCLEGFSDLDPQQQKVVE 104
>gi|354466769|ref|XP_003495845.1| PREDICTED: DNA ligase 3 isoform 2 [Cricetulus griseus]
gi|344238283|gb|EGV94386.1| DNA ligase 3 [Cricetulus griseus]
Length = 1014
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCF 100
++YAK + C+ C+ KI KG R+ K+ + + G + EWYH+ C
Sbjct: 96 VDYAKRGTAGCKKCKEKILKGVCRIGKV-VPNPFSESAGDMKEWYHVKCI 144
>gi|354466767|ref|XP_003495844.1| PREDICTED: DNA ligase 3 isoform 1 [Cricetulus griseus]
Length = 942
Score = 38.9 bits (89), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC----FNAVRLD 106
++YAK + C+ C+ KI KG R+ K+ + + G + EWYH+ C R
Sbjct: 96 VDYAKRGTAGCKKCKEKILKGVCRIGKV-VPNPFSESAGDMKEWYHVKCIFEKLERARAT 154
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + + T QVS
Sbjct: 155 TKKIEDLTELEGWEELEDDEKEQISQHIADLSSKAAGTPKKKTAVQAKVTTTGQVS 210
>gi|354466771|ref|XP_003495846.1| PREDICTED: DNA ligase 3 isoform 3 [Cricetulus griseus]
Length = 955
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC----FNAVRLD 106
++YAK + C+ C+ KI KG R+ K+ + + G + EWYH+ C R
Sbjct: 96 VDYAKRGTAGCKKCKEKILKGVCRIGKV-VPNPFSESAGDMKEWYHVKCIFEKLERARAT 154
Query: 107 LEFSASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYLTLQVS 162
+ ++ G+ LE +++ + + LS + T + + T QVS
Sbjct: 155 TKKIEDLTELEGWEELEDDEKEQISQHIADLSSKAAGTPKKKTAVQAKVTTTGQVS 210
>gi|340057260|emb|CCC51603.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 240
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 51 IEYAKSNRSTCRG--CEAKIAKGEIRVSKMNYDSDQGKMIGGIP----EWYHLSCFNAVR 104
+EYAKS R+ C C IAK E+RV G GG P +W H+ CF +
Sbjct: 6 VEYAKSGRAKCSSTTCNMTIAKNEVRVGTAVLFPAAGNG-GGEPTLTYKWRHVCCFTDRQ 64
Query: 105 LDLEFSASG-KQIPGFGSLEKKDQKIV 130
L + G I G L D+ ++
Sbjct: 65 LKNALAEGGMDSIEGLDDLAPTDRDLI 91
>gi|330804248|ref|XP_003290109.1| hypothetical protein DICPUDRAFT_36817 [Dictyostelium purpureum]
gi|325079774|gb|EGC33358.1| hypothetical protein DICPUDRAFT_36817 [Dictyostelium purpureum]
Length = 941
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSC 99
+EYAKS+RS+C C I K ++R+ Y + G W+HL C
Sbjct: 11 VEYAKSDRSSCATCSRGINKEDVRIG---YKTKSRHFDGMDISWHHLKC 56
>gi|145502450|ref|XP_001437203.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404352|emb|CAK69806.1| unnamed protein product [Paramecium tetraurelia]
Length = 138
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 27/107 (25%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM------NYDSDQGKMIGGIPEWYHLSCFNAVR 104
+ YA SNR+ C GC IAK EIR + YD WYHL+C
Sbjct: 7 VGYALSNRARCTGCFQNIAKNEIRFGHVFVAPGFGYDK---------KHWYHLTC----- 52
Query: 105 LDLEFSASG---KQIP--GFGSLEKKDQKIVEATLPSLSDGVSKTDA 146
L+F G + +P L+ +DQK V L + K A
Sbjct: 53 --LKFIPKGDRNQDVPLINIHCLKSEDQKKVHDRLDFVKKNCGKKFA 97
>gi|159163219|pdb|1V9X|A Chain A, Solution Structure Of The First Zn-Finger Domain Of
Poly(Adp-Ribose) Polymerase-1
Length = 114
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 1 SPFFDGKTPKWFHEECFWKKNRP-KALLDIHNVTSLRHQDQEMIK 44
S FDG P W H C KK + K++ D+ + SLR +DQ+ I+
Sbjct: 43 STHFDGIMPMWNHASCILKKTKQIKSVDDVEGIESLRWEDQQKIR 87
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFSA 111
EYAKS+RS+C+ C++ I K R+ K+ + G +P W H SC ++
Sbjct: 14 EYAKSSRSSCKTCKSVINKENFRLGKLVQSTH---FDGIMPMWNHASCILKKTKQIK--- 67
Query: 112 SGKQIPGFGSLEKKDQKIVEATLPS 136
S + G SL +DQ+ + + S
Sbjct: 68 SVDDVEGIESLRWEDQQKIRKYVES 92
>gi|196007104|ref|XP_002113418.1| hypothetical protein TRIADDRAFT_57566 [Trichoplax adhaerens]
gi|190583822|gb|EDV23892.1| hypothetical protein TRIADDRAFT_57566 [Trichoplax adhaerens]
Length = 823
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKM--NYDSDQGKMIGGIPEWYHLSC-FNA 102
EY +S R++C+GC+ K+ K +R++K+ N D G+ + +W+H C FN+
Sbjct: 8 EYDRSGRASCKGCKQKLEKKALRIAKVVENPFGDTGET---MKQWHHPKCIFNS 58
>gi|145492931|ref|XP_001432462.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399574|emb|CAK65065.1| unnamed protein product [Paramecium tetraurelia]
Length = 135
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 43 IKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNA 102
+K K EYA SNR C C I K ++++ + D+G+ WYH+ C
Sbjct: 1 MKMKQFLECEYALSNRIKCATCHTVIYKHDLKIGHIFLRKDEGQQFDK-KVWYHVDCVKK 59
Query: 103 VRLDLEFSASGKQIPGF--GSLEKKDQKIVEATLPSLSD 139
G+++P F SL+ +DQ ++ SL +
Sbjct: 60 ----WPTGEKGQELPLFRLQSLKAEDQLRIKELYRSLQE 94
>gi|357621098|gb|EHJ73055.1| hypothetical protein KGM_05634 [Danaus plexippus]
Length = 917
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKM---NYDSDQGKMIGGIPEWYHLSCFNAVRLDL 107
++ AK R+ C+GC+A G++R++K+ Y +Q + W+H++C V L
Sbjct: 9 VDRAKVGRANCKGCKAHCESGQLRIAKLVASPYGENQ-----QMKSWHHVNCLMNVLLKQ 63
Query: 108 EFSA----SGKQIPGFGSLEKKDQKIV 130
+ S I + ++ K+DQ+ +
Sbjct: 64 RPTTKRIDSIDDIGNWDNISKEDQEFI 90
>gi|290994917|ref|XP_002680078.1| predicted protein [Naegleria gruberi]
gi|284093697|gb|EFC47334.1| predicted protein [Naegleria gruberi]
Length = 413
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
IEY+KS+RS C+ I + +R+ K+ S+ G PEWY N DL
Sbjct: 12 IEYSKSSRSKCKLTGKNIPQSVLRIGKI-VRSEVDSFGGNYPEWY-----NFEDDDLVEK 65
Query: 111 ASGKQIPGFGSLEKKDQKIVEATL 134
+I G L+ D+K +E L
Sbjct: 66 LKNHEIHGLKKLKANDKKRIEELL 89
>gi|189234169|ref|XP_001809442.1| PREDICTED: similar to ligase III, DNA, ATP-dependent [Tribolium
castaneum]
gi|270002458|gb|EEZ98905.1| hypothetical protein TcasGA2_TC004521 [Tribolium castaneum]
Length = 450
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDS-DQGKMIGGIPEWYHLSCF 100
+E A+ R+ C+ C K +G++R++K+ + GKM WYH+SC
Sbjct: 8 VEVARQGRALCKKCRQKCVQGDLRIAKLIPNPLGSGKM----KTWYHVSCI 54
>gi|380019623|ref|XP_003693702.1| PREDICTED: DNA ligase 3-like, partial [Apis florea]
Length = 208
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDS-DQGKMIGGIPEWYHLSCF 100
+E AKS R+ C+ C+ I K +R++K+ + GKM W+HL+C
Sbjct: 11 VERAKSGRAKCKKCKCPIEKDTVRIAKLVANPFTDGKMKA----WHHLTCL 57
>gi|242043766|ref|XP_002459754.1| hypothetical protein SORBIDRAFT_02g009895 [Sorghum bicolor]
gi|241923131|gb|EER96275.1| hypothetical protein SORBIDRAFT_02g009895 [Sorghum bicolor]
Length = 52
Score = 37.4 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 52 EYAKSNRSTCRGCEAKIAKGEIRVSKM 78
EYAKS R++C+ C++ IAK ++R+ KM
Sbjct: 15 EYAKSGRASCKSCKSPIAKDQLRLGKM 41
>gi|308489774|ref|XP_003107080.1| hypothetical protein CRE_17273 [Caenorhabditis remanei]
gi|308252968|gb|EFO96920.1| hypothetical protein CRE_17273 [Caenorhabditis remanei]
Length = 883
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 37/152 (24%)
Query: 11 WFHEECFWKK-NRPKALLDIHNVTSLRHQDQEMIKSKILG-------------------- 49
W+H +CF+ N I + SL + Q +++++I
Sbjct: 50 WYHFDCFFDHINDDIYFTKISGIDSLPWKHQNLLQTRIKQFRDFTEQEFIVYHSVMELSS 109
Query: 50 -NIEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLE 108
N++ +KSN C+ C A+GEIRV + + H++ F+ ++ LE
Sbjct: 110 LNVQRSKSNGEKCQKCLTNFARGEIRVV---------SRLQVLHFKCHVNVFSRIKGQLE 160
Query: 109 FSASGKQIPGFGSLEKKDQKIVEATLPSLSDG 140
IPG+ K+ +K++ A ++ D
Sbjct: 161 ------DIPGWDKFGKEARKLIMADYAAIGDS 186
>gi|449540684|gb|EMD31673.1| hypothetical protein CERSUDRAFT_88802 [Ceriporiopsis subvermispora
B]
Length = 1191
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EY++SNR+ C G A I + + Y G EW H C L +
Sbjct: 5 LEYSRSNRAKCHG-PAPCKWTAIDLGLLRYGQVNSGPYGETVEWRHWGCVTPQILASLAA 63
Query: 111 ASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTD 145
A ++I GF SL +DQ V L+ G+ + D
Sbjct: 64 AGLERIQGFSSLRPEDQAKVR-----LAVGLRRID 93
>gi|401395227|ref|XP_003879584.1| putative poly(ADP)-ribose polymerase domain-containing protein
[Neospora caninum Liverpool]
gi|325113991|emb|CBZ49549.1| putative poly(ADP)-ribose polymerase domain-containing protein
[Neospora caninum Liverpool]
Length = 355
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 42 MIKSKILGNIEYAKSNRSTCRGCEAKIAKGEIRVSKMN-------YDSD------QGKMI 88
M +I+ + EYA S R+ CR C + I KG++R+ D++ Q +
Sbjct: 1 MPAKEIVFHCEYAPSGRARCRVCNSSIPKGQLRLGTGQPFAEPSLTDTEDVNINRQRTIA 60
Query: 89 GGIPEWYHLSCF 100
P W H +CF
Sbjct: 61 AEAPRWCHANCF 72
>gi|159462836|ref|XP_001689648.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283636|gb|EDP09386.1| predicted protein [Chlamydomonas reinhardtii]
Length = 160
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVS-KMNYDSDQG-KMIGGIPEWYHLSCF--NAVRLD 106
+EYAKS R+ C+GC IA +R+S + + ++G K H+ C V
Sbjct: 7 VEYAKSGRAMCKGCNKPIADKALRLSVQSTKEPEEGAKDHRRFTNNRHIECLTKTVVANG 66
Query: 107 LEFSASGKQIPGFGSLEKKDQK----IVEATLPSLSDGVSKTDA 146
L+ S Q PG L D++ I+E + + +K D+
Sbjct: 67 LKVHDSADQFPGMADLTPSDRERVLDIIEKVMAGTWEAPAKADS 110
>gi|402223893|gb|EJU03956.1| hypothetical protein DACRYDRAFT_87309 [Dacryopinax sp. DJM-731 SS1]
Length = 962
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 53 YAKSNRSTCRG----CEA-KIAKGEIRVSKMNYDS-----DQGKMIGGIPEWYHLSCFNA 102
YAKS+R+ C G C IA+GE+R ++ +M+ +WYH C
Sbjct: 40 YAKSSRAKCHGSFPTCTGLPIARGELRYGAYVHNPFGNRYSDSEMV----QWYHWGCLPK 95
Query: 103 VRLDLEFSASGKQIPGFGSLE 123
LD +A + GFG+L+
Sbjct: 96 TILDKVANAGVVNVEGFGTLK 116
>gi|223935575|ref|ZP_03627491.1| adenylate kinase [bacterium Ellin514]
gi|223895583|gb|EEF62028.1| adenylate kinase [bacterium Ellin514]
Length = 193
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 10/60 (16%)
Query: 84 QGKMIGGIPEWYHLSC---FNAVRLD-------LEFSASGKQIPGFGSLEKKDQKIVEAT 133
QGK+IG IP ++H +C F +++ D LE+S+ G+ +P ++E Q I +T
Sbjct: 19 QGKIIGNIPNFFHCACGDVFRSMKPDSIIGKIFLEYSSRGELVPDETTVEMWQQSIRNST 78
>gi|449539973|gb|EMD30973.1| hypothetical protein CERSUDRAFT_120235 [Ceriporiopsis subvermispora
B]
Length = 1152
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EY++S+R+ C G A I + + Y + G EW H C L +
Sbjct: 5 LEYSRSSRAKCHG-PAPCKGSAIDLGLLRYGQVKSGPYGETVEWRHWGCVTPHILASLAA 63
Query: 111 ASGKQIPGFGSLEKKDQKIVEATLPSLSDGVSKTD 145
A ++I GF SL +DQ V L+ G+ + D
Sbjct: 64 AGLERIQGFTSLRPEDQAKVR-----LAAGLRRID 93
>gi|397632382|gb|EJK70531.1| hypothetical protein THAOC_08098, partial [Thalassiosira oceanica]
Length = 1176
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVS-KMNYDSDQGKMIGGIPEWYHLSC 99
+EY+KS R+TC+ C+ +I KG +RV + + G M+ + HL C
Sbjct: 125 VEYSKSGRATCKTCDERILKGSLRVGHRPLFRGKPGFMV-----YRHLHC 169
>gi|255075383|ref|XP_002501366.1| SNF2 super family [Micromonas sp. RCC299]
gi|226516630|gb|ACO62624.1| SNF2 super family [Micromonas sp. RCC299]
Length = 961
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVS-KMNYDSDQGKMIGGIPEWYHLSCF 100
+E AKS R+ CR C IAK +R+ + + +G + G I W H +C
Sbjct: 31 VEIAKSGRARCRKCSELIAKDSVRIGVPIKW---RGGLFGWISSWQHPACL 78
>gi|325191520|emb|CCA25894.1| PREDICTED: similar to SNF2 domaincontaining protein [Albugo
laibachii Nc14]
Length = 966
Score = 35.4 bits (80), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 51 IEYAKSNRSTCRGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWYHLSCFNAVRLDLEFS 110
+EY+ +NRS C+ C+ K+ K +RV +S G M HL C D E +
Sbjct: 187 LEYSNNNRSKCKSCDGKLFKDGLRVGVRIRNSLFGLM--------HLQCTQICSSDPETA 238
Query: 111 ASGKQIPGFGSLEKKDQKIV 130
+ G +L D+K+V
Sbjct: 239 S----FTGLNALSPMDRKLV 254
>gi|422729485|ref|ZP_16785886.1| conserved hypothetical protein [Enterococcus faecalis TX0012]
gi|315150086|gb|EFT94102.1| conserved hypothetical protein [Enterococcus faecalis TX0012]
Length = 381
Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 24/170 (14%)
Query: 10 KWFHEECFWKKNRPKALLDIH--------NVTSLRHQDQEMIKSKILGNIEYAKSNRSTC 61
KWF F+ KN+ L ++ V I+ +G+IEY ++ R
Sbjct: 157 KWFIPRDFFSKNQIDKLTGVYFPYWVVDAEVDGQLQATGTSIRIWRVGDIEYTETKRFNV 216
Query: 62 RGCEAKIAKGEIRVSKMNYDSDQGKMIGGIPEWY----------HLSCFNAVRLDLEFSA 111
G K++ E+ + ++ + Q KM+ G+ + +L+ F A + D+E+ A
Sbjct: 217 -GRSGKLSFKELVKNALSKNVQQ-KMVEGVQPFLIDQAVPFKSQYLAGFQAEKRDIEYEA 274
Query: 112 SGK----QIPGFGSLEKKDQKIVEATLPSLSDGVSKTDAISHFLLIPLYL 157
K ++ + +D TL ++ +S T +H++L+P++L
Sbjct: 275 IKKHVQQELQDYSESLLRDSASGYTTLTNVRTDISLTQENNHYMLLPIWL 324
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,460,944,200
Number of Sequences: 23463169
Number of extensions: 88882438
Number of successful extensions: 193033
Number of sequences better than 100.0: 406
Number of HSP's better than 100.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 214
Number of HSP's that attempted gapping in prelim test: 191805
Number of HSP's gapped (non-prelim): 680
length of query: 162
length of database: 8,064,228,071
effective HSP length: 123
effective length of query: 39
effective length of database: 9,473,225,580
effective search space: 369455797620
effective search space used: 369455797620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)